Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Genome_Change Annotation_Transcript Transcript_Strand Transcript_Exon Transcript_Position cDNA_Change Codon_Change Protein_Change Other_Transcripts Refseq_mRNA_Id Refseq_prot_Id SwissProt_acc_Id SwissProt_entry_Id Description UniProt_AApos UniProt_Region UniProt_Site UniProt_Natural_Variations UniProt_Experimental_Info GO_Biological_Process GO_Cellular_Component GO_Molecular_Function COSMIC_overlapping_mutations COSMIC_fusion_genes COSMIC_tissue_types_affected COSMIC_total_alterations_in_gene Tumorscape_Amplification_Peaks Tumorscape_Deletion_Peaks TCGAscape_Amplification_Peaks TCGAscape_Deletion_Peaks DrugBank ref_context gc_content CCLE_ONCOMAP_overlapping_mutations CCLE_ONCOMAP_total_mutations_in_gene CGC_Mutation_Type CGC_Translocation_Partner CGC_Tumor_Types_Somatic CGC_Tumor_Types_Germline CGC_Other_Diseases DNARepairGenes_Role FamilialCancerDatabase_Syndromes MUTSIG_Published_Results OREGANNO_ID OREGANNO_Values t_alt_count t_ref_count validation_alt_allele validation_method validation_status validation_tumor_sample pox qox pox_cutoff isArtifactMode oxoGCut CXorf61 203413 broad.mit.edu 37 X 115592946 115592946 + Missense_Mutation SNP C C T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chrX:115592946C>T ENST00000371894.4 - 2 450 c.304G>A c.(304-306)Ggt>Agt p.G102S NM_001017978.2 NP_001017978.1 Q5H943 KKLC1_HUMAN chromosome X open reading frame 61 102 integral to membrane|plasma membrane breast(1)|large_intestine(3)|lung(8) 12 CCTCTGAAACCCTTGCTAAGT 0.423000 4 190 0 0 0.009096 0 0 ABCA3 21 broad.mit.edu 37 16 2331127 2331127 + Silent SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr16:2331127G>A ENST00000301732.5 - 28 4960 c.4260C>T c.(4258-4260)gcC>gcT p.A1420A ABCA3_ENST00000382381.3_Silent_p.A1362A NM_001089.2 NP_001080.2 Q99758 ABCA3_HUMAN ATP-binding cassette, sub-family A (ABC1), member 3 1420 ABC transporter 2. response to drug integral to membrane|lamellar body|membrane fraction|plasma membrane ATP binding|ATPase activity, coupled to transmembrane movement of substances breast(7)|central_nervous_system(4)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(11)|liver(1)|lung(20)|ovary(7)|prostate(5)|skin(6)|upper_aerodigestive_tract(1) 70 Ovarian(90;0.17) TGGTCTTCCCGGCTCCATTGA 0.617000 4 100 0 0 0.014758 0 0 PLCE1 51196 broad.mit.edu 37 10 95849061 95849061 + Silent SNP C C T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr10:95849061C>T ENST00000371375.1 + 1 210 c.210C>T c.(208-210)ttC>ttT p.F70F PLCE1_ENST00000371380.2_Intron|PLCE1_ENST00000260766.3_Intron|RP11-429H9.4_ENST00000438899.1_RNA|PLCE1_ENST00000371385.3_Silent_p.F70F Q9P212 PLCE1_HUMAN phospholipase C, epsilon 1 0 activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction cytosol|Golgi membrane|membrane fraction|plasma membrane calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity liver(1)|ovary(2)|skin(4)|upper_aerodigestive_tract(1) 8 Colorectal(252;0.0458) GTTGGCTCTTCCCGCTCTCTG 0.512000 59 106 0 0 0.048971 0 0 BMS1 9790 broad.mit.edu 37 10 43318593 43318593 + Missense_Mutation SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr10:43318593G>A ENST00000374518.4 + 20 3223 c.3160G>A c.(3160-3162)Gcc>Acc p.A1054T NM_014753.3 NP_055568.3 Q14692 BMS1_HUMAN BMS1 ribosome biogenesis factor 1054 ribosome assembly nucleolus ATP binding|GTP binding|GTPase activity NS(1)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(15)|lung(23)|ovary(2)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1) 62 CTTGGAAGTGGCCAAATTTGA 0.423000 4 137 0 0 0.029380 0 0 TSSC2 0 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C C T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr11:3427845C>T ENST00000529482.1 + 0 962 CTTCAAGTGGCAGGAGCAGAA 0.587000 7 58 0 0 0.029380 0 0 THOC1 9984 broad.mit.edu 37 18 265318 265318 + Missense_Mutation SNP A A C TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr18:265318A>C ENST00000261600.6 - 3 181 c.174T>G c.(172-174)atT>atG p.I58M THOC1_ENST00000582313.1_5'UTR NM_005131.2 NP_005122.2 Q96FV9 THOC1_HUMAN THO complex 1 58 apoptosis|intronless viral mRNA export from host nucleus|mRNA processing|regulation of transcription elongation, DNA-dependent|RNA splicing|signal transduction|transcription, DNA-dependent cytoplasm|nuclear matrix|nuclear speck|THO complex part of transcription export complex DNA binding|protein binding|RNA binding breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(5)|ovary(1)|skin(1)|stomach(1)|urinary_tract(1) 20 all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412) CTTCTTCTAGAATACCTCTGA 0.269000 7 14 0 0 0.038147 0 0 EZH1 2145 broad.mit.edu 37 17 40857116 40857116 + Missense_Mutation SNP T T A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr17:40857116T>A ENST00000428826.2 - 17 2046 c.1925A>T c.(1924-1926)tAc>tTc p.Y642F EZH1_ENST00000435174.1_Missense_Mutation_p.Y503F|EZH1_ENST00000585893.1_Missense_Mutation_p.Y602F|EZH1_ENST00000590783.1_5'UTR|EZH1_ENST00000592743.1_Missense_Mutation_p.Y642F|EZH1_ENST00000590078.1_Missense_Mutation_p.Y572F|EZH1_ENST00000415827.2_Missense_Mutation_p.Y633F Q92800 EZH1_HUMAN enhancer of zeste homolog 1 (Drosophila) 642 SET. anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent ESC/E(Z) complex chromatin binding|DNA binding breast(1)|endometrium(4)|large_intestine(6)|lung(9)|ovary(3)|prostate(1)|skin(1)|urinary_tract(2) 27 Breast(137;0.00104) BRCA - Breast invasive adenocarcinoma(366;0.0784) CTCACCACAGTATTCAGAAAT 0.507000 26 64 0 0 0.083992 0 0 MAP3K19 80122 broad.mit.edu 37 2 135744495 135744495 + Missense_Mutation SNP C C G TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr2:135744495C>G ENST00000375845.3 - 7 1977 c.1947G>C c.(1945-1947)atG>atC p.M649I MAP3K19_ENST00000392917.3_Intron|MAP3K19_ENST00000358371.4_Missense_Mutation_p.M536I|MAP3K19_ENST00000375844.3_Intron|MAP3K19_ENST00000315513.3_5'UTR|MAP3K19_ENST00000392915.1_Missense_Mutation_p.M666I|MAP3K19_ENST00000392918.3_Intron NM_025052.3 NP_079328.3 mitogen-activated protein kinase kinase kinase 19 TTTCTTTGAACATATCACTAT 0.393000 3 221 0 0 0.009096 0 0 CROCCP2 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C C T rs367060 TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr1:16946434C>T ENST00000412962.1 - 0 1085 CTCAGCCTTCCGCCGGGCCAG 0.672000 4 31 0 0 0.009096 0 0 SMARCA5 8467 broad.mit.edu 37 4 144466691 144466691 + Silent SNP A A G TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr4:144466691A>G ENST00000283131.3 + 18 2814 c.2352A>G c.(2350-2352)ttA>ttG p.L784L NM_003601.3 NP_003592.3 O60264 SMCA5_HUMAN SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 784 CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding EWSR1/SMARCA5(2) endometrium(2)|kidney(2)|large_intestine(9)|lung(4)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1) 21 all_hematologic(180;0.158) TATTTGAATTACTGGAAAAAG 0.338000 3 68 0 0 0.009096 0 0 PFKP 5214 broad.mit.edu 37 10 3177999 3177999 + Missense_Mutation SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr10:3177999G>A ENST00000381075.2 + 23 2394 c.2170G>A c.(2170-2172)Gtg>Atg p.V724M PFKP_ENST00000381072.1_Missense_Mutation_p.V150M|PFKP_ENST00000381125.4_Missense_Mutation_p.V732M NM_001242339.1 NP_001229268.1 Q01813 K6PP_HUMAN phosphofructokinase, platelet 732 glycolysis 6-phosphofructokinase complex 6-phosphofructokinase activity|ATP binding|metal ion binding|protein binding breast(2)|central_nervous_system(4)|endometrium(3)|large_intestine(3)|lung(10)|ovary(2)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(1) 31 GBM - Glioblastoma multiforme(1;0.000975)|all cancers(11;0.00351)|Epithelial(11;0.142) TTTTCAACCTGTGGCAGAGCT 0.398000 4 68 0 0 0.021553 0 0 ATP2A2 488 broad.mit.edu 37 12 110765417 110765417 + Silent SNP C C T rs143310856 by1000genomes TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr12:110765417C>T ENST00000395494.2 + 7 1172 c.609C>T c.(607-609)acC>acT p.T203T ATP2A2_ENST00000539276.2_Silent_p.T230T|ATP2A2_ENST00000308664.6_Silent_p.T230T P16615 AT2A2_HUMAN ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 230 ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding NS(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(8)|lung(10)|ovary(3)|pancreas(1)|prostate(2)|skin(4)|urinary_tract(1) 38 GAGTTAACACCGAAATTGGCA 0.463000 7 251 0 0 0.029380 0 0 TM9SF4 9777 broad.mit.edu 37 20 30745657 30745657 + Missense_Mutation SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr20:30745657G>A ENST00000217315.5 + 14 1679 c.1339G>A c.(1339-1341)Gtc>Atc p.V447I TM9SF4_ENST00000398022.2_Missense_Mutation_p.V464I Q92544 TM9S4_HUMAN transmembrane 9 superfamily protein member 4 464 integral to membrane central_nervous_system(2)|kidney(1)|large_intestine(4)|lung(8)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1) 20 UCEC - Uterine corpus endometrioid carcinoma (5;0.0241) CCTGCCCCTCGTCTACTTGGG 0.602000 67 132 0 0 0.048971 0 0 DCST2 127579 broad.mit.edu 37 1 155004126 155004126 + Missense_Mutation SNP C C T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr1:155004126C>T ENST00000368424.3 - 4 721 c.663G>A c.(661-663)atG>atA p.M221I DCST2_ENST00000295536.5_Missense_Mutation_p.M221I NM_144622.2 NP_653223.2 Q5T1A1 DCST2_HUMAN DC-STAMP domain containing 2 221 integral to membrane breast(1)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(10)|lung(13)|ovary(3)|prostate(1)|skin(1) 38 all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877) BRCA - Breast invasive adenocarcinoma(34;0.00034) GTATGACCATCATGCAGCTGT 0.567000 10 112 0 0 0.069234 0 0 FRY 10129 broad.mit.edu 37 13 32835817 32835817 + Missense_Mutation SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr13:32835817G>A ENST00000380250.3 + 52 7977 c.7481G>A c.(7480-7482)tGt>tAt p.C2494Y NM_023037.2 NP_075463.2 Q5TBA9 FRY_HUMAN furry homolog (Drosophila) 2494 regulation of transcription, DNA-dependent|transcription, DNA-dependent integral to membrane NS(3)|breast(4)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(31)|lung(50)|ovary(5)|pancreas(1)|prostate(6)|skin(9)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1) 132 Lung SC(185;0.0271) all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104) CTGGATAAGTGTGATATGCAG 0.498000 28 40 0 0 0.034045 0 0 CD40LG 959 broad.mit.edu 37 X 135741330 135741330 + Missense_Mutation SNP G G A rs11575982 byFrequency TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chrX:135741330G>A ENST00000370629.2 + 5 598 c.542G>A c.(541-543)cGg>cAg p.R181Q CD40LG_ENST00000370628.2_Missense_Mutation_p.R160Q NM_000074.2 NP_000065.1 P29965 CD40L_HUMAN CD40 ligand 181 anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production extracellular space|integral to plasma membrane|soluble fraction CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding p.R181L(2) endometrium(1)|kidney(1)|large_intestine(8)|lung(14)|skin(1)|stomach(1) 26 Acute lymphoblastic leukemia(192;0.000127) Atorvastatin(DB01076) TGTTCCAATCGGGAAGCTTCG 0.463000 Immune Deficiency with Hyper-IgM 166 306 0 0 0.048971 0 0 CD28 940 broad.mit.edu 37 2 204594418 204594418 + Missense_Mutation SNP T T C TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr2:204594418T>C ENST00000374481.3 + 4 427 c.205T>C c.(205-207)Ttt>Ctt p.F69L CD28_ENST00000458610.2_Missense_Mutation_p.F167L|CD28_ENST00000374478.4_Missense_Mutation_p.F34L|CD28_ENST00000324106.7_Missense_Mutation_p.F153L P10747 CD28_HUMAN CD28 molecule 153 Ig-like V-type. cell surface receptor linked signaling pathway|cytokine biosynthetic process|humoral immune response|positive regulation of anti-apoptosis|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation of translation|positive regulation of viral genome replication|regulation of defense response to virus by virus|regulatory T cell differentiation|T cell costimulation|viral reproduction cytosol|external side of plasma membrane|integral to plasma membrane coreceptor activity|protease binding|SH3/SH2 adaptor activity endometrium(1)|kidney(2)|large_intestine(4)|lung(3)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1) 13 TTCTAAGCCCTTTTGGGTGCT 0.443000 3 186 0 0 0.004672 0 0 EPHB1 2047 broad.mit.edu 37 3 134960104 134960104 + Missense_Mutation SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr3:134960104G>A ENST00000398015.3 + 13 2831 c.2461G>A c.(2461-2463)Gga>Aga p.G821R EPHB1_ENST00000493838.1_Missense_Mutation_p.G382R NM_004441.4 NP_004432.1 P54762 EPHB1_HUMAN EPH receptor B1 821 Protein kinase. integral to plasma membrane ATP binding|ephrin receptor activity|protein binding NS(1)|breast(3)|central_nervous_system(3)|endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(13)|lung(63)|ovary(8)|pancreas(2)|prostate(8)|skin(7)|stomach(4)|upper_aerodigestive_tract(4)|urinary_tract(2) 130 CATGTCATTTGGAGAGAGACC 0.517000 112 207 0 0 0.048971 0 0 SORBS1 10580 broad.mit.edu 37 10 97154771 97154771 + Silent SNP C C T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr10:97154771C>T ENST00000371247.2 - 14 1473 c.1284G>A c.(1282-1284)caG>caA p.Q428Q SORBS1_ENST00000607232.1_Intron|SORBS1_ENST00000371245.3_Intron|SORBS1_ENST00000347291.4_Silent_p.Q296Q|SORBS1_ENST00000371227.4_Intron|SORBS1_ENST00000371239.1_Intron|SORBS1_ENST00000371246.2_Silent_p.Q428Q|SORBS1_ENST00000353505.5_Intron|SORBS1_ENST00000371241.1_Intron|SORBS1_ENST00000306402.6_Intron|SORBS1_ENST00000354106.3_Silent_p.Q419Q|SORBS1_ENST00000277982.5_Silent_p.Q428Q|SORBS1_ENST00000361941.3_Silent_p.Q428Q|SORBS1_ENST00000371249.2_Intron|SORBS1_ENST00000474353.2_Intron|SORBS1_ENST00000393949.1_Silent_p.Q419Q Q9BX66 SRBS1_HUMAN sorbin and SH3 domain containing 1 428 SoHo. focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens actin binding|insulin receptor binding|SH3/SH2 adaptor activity NS(1)|breast(3)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(7)|lung(19)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(1) 42 Colorectal(252;0.0429) Epithelial(162;1.7e-06)|all cancers(201;6.52e-05) CGGAAGTTTGCTGGATTTCAG 0.403000 4 257 0 0 0.014758 0 0 PLG 5340 broad.mit.edu 37 6 161134119 161134119 + Missense_Mutation SNP A A C TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr6:161134119A>C ENST00000308192.9 + 5 572 c.509A>C c.(508-510)gAa>gCa p.E170A PLG_ENST00000462918.1_3'UTR NM_000301.3 NP_000292.1 P00747 PLMN_HUMAN plasminogen 170 Kringle 1. extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen apolipoprotein binding|cell surface binding|serine-type endopeptidase activity NS(1)|breast(4)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(12)|lung(19)|ovary(1)|prostate(3)|skin(9)|upper_aerodigestive_tract(1) 59 OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06) Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013) ACTGATCCAGAAAAGAGATAT 0.463000 5 197 0 0 0.021553 0 0 TET1 80312 broad.mit.edu 37 10 70411612 70411612 + Missense_Mutation SNP T T C TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr10:70411612T>C ENST00000373644.4 + 5 4495 c.4286T>C c.(4285-4287)aTa>aCa p.I1429T NM_030625.2 NP_085128.2 Q8NFU7 TET1_HUMAN tet methylcytosine dioxygenase 1 1429 DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(2)|ovary(5)|prostate(1)|upper_aerodigestive_tract(2) 21 GATCGAGTTATACAAAAAGAC 0.428000 7 131 0 0 0.047766 0 0 GLP2R 9340 broad.mit.edu 37 17 9763385 9763385 + Missense_Mutation SNP C C T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr17:9763385C>T ENST00000262441.5 + 7 1405 c.892C>T c.(892-894)Cgg>Tgg p.R298W GLP2R_ENST00000574745.1_Missense_Mutation_p.R118W NM_004246.1 NP_004237.1 O95838 GLP2R_HUMAN glucagon-like peptide 2 receptor 298 G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation integral to membrane|plasma membrane endometrium(4)|large_intestine(7)|lung(22)|ovary(2)|prostate(2)|skin(6)|upper_aerodigestive_tract(1) 44 Glucagon recombinant(DB00040) TCCTGAGAGGCGGCTGTGGCC 0.542000 10 23 0 0 0.069234 0 0 ZNF234 10780 broad.mit.edu 37 19 44661248 44661248 + Missense_Mutation SNP A A G TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr19:44661248A>G ENST00000426739.2 + 6 1337 c.1079A>G c.(1078-1080)cAg>cGg p.Q360R ZNF234_ENST00000592437.1_Missense_Mutation_p.Q360R NM_006630.2 NP_006621.1 Q14588 ZN234_HUMAN zinc finger protein 234 360 regulation of transcription, DNA-dependent|transcription, DNA-dependent nucleus DNA binding|zinc ion binding p.Q360R(1) endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(2)|lung(11)|ovary(1)|prostate(1) 23 Prostate(69;0.0435) TCACAATTTCAGGCCCATCGG 0.443000 3 39 0 0 0.009096 0 0 PARD6B 84612 broad.mit.edu 37 20 49366339 49366339 + Missense_Mutation SNP A A T TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr20:49366339A>T ENST00000371610.2 + 3 676 c.433A>T c.(433-435)Att>Ttt p.I145F PARD6B_ENST00000396039.1_Intron NM_032521.2 NP_115910.1 Q9BYG5 PAR6B_HUMAN par-6 family cell polarity regulator beta 145 Interaction with PARD3 and CDC42 (By similarity).|Pseudo-CRIB. axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly cytosol|tight junction protein binding NS(1)|breast(1)|endometrium(1)|kidney(4)|lung(3)|urinary_tract(1) 11 TGTGTCTTCTATTATAGACGT 0.438000 27 46 0 0 0.099896 0 0 GRIP2 80852 broad.mit.edu 37 3 14558718 14558718 + RNA SNP A A G TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr3:14558718A>G ENST00000273083.3 - 0 1224 Q9C0E4 GRIP2_HUMAN glutamate receptor interacting protein 2 synaptic transmission cytosol|plasma membrane protein binding endometrium(5)|large_intestine(4)|lung(8)|ovary(1)|pancreas(1)|prostate(5)|skin(1) 25 AGTTGAAGACAAGGCTGGGGA 0.612000 4 52 0 0 0.009096 0 0 KIF1A 547 broad.mit.edu 37 2 241724413 241724413 + Missense_Mutation SNP G G A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr2:241724413G>A ENST00000498729.2 - 7 959 c.713C>T c.(712-714)aCg>aTg p.T238M KIF1A_ENST00000320389.7_Missense_Mutation_p.T238M NM_001244008.1 NP_001230937.1 Q12756 KIF1A_HUMAN kinesin family member 1A 238 Kinesin-motor. anterograde axon cargo transport cytoplasm|microtubule|nucleus ATP binding|microtubule motor activity NS(1)|central_nervous_system(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(8)|lung(25)|ovary(1)|prostate(5)|skin(2)|urinary_tract(1) 66 all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244) Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176) CACCTTCTCCGTGGTGATATT 0.612000 4 165 0 0 0.009096 0 0 APOB 338 broad.mit.edu 37 2 21231425 21231425 + Missense_Mutation SNP T T A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr2:21231425T>A ENST00000233242.1 - 26 8442 c.8315A>T c.(8314-8316)gAt>gTt p.D2772V NM_000384.2 NP_000375.2 P04114 APOB_HUMAN apolipoprotein B 2772 cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity NS(5)|autonomic_ganglia(1)|breast(6)|central_nervous_system(4)|cervix(3)|endometrium(19)|kidney(10)|large_intestine(63)|liver(5)|lung(125)|ovary(16)|pancreas(1)|prostate(5)|skin(31)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(6) 305 Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215) Atorvastatin(DB01076) AGCATTTGCATCTAATGTGAA 0.428000 10 174 0 0 0.080935 0 0 MTHFD1L 25902 broad.mit.edu 37 6 151239804 151239804 + Splice_Site SNP G G C TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr6:151239804G>C ENST00000367321.3 + 9 1258 c.984_splice c.e9+1 p.Q328_splice NM_001242767.1|NM_001242768.1|NM_015440.4 NP_001229696.1|NP_001229697.1|NP_056255.2 Q6UB35 C1TM_HUMAN methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 328 Methylenetetrahydrofolate dehydrogenase and cyclohydrolase. folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process mitochondrion ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(12)|lung(8)|ovary(3)|prostate(1)|upper_aerodigestive_tract(2) 29 Ovarian(120;0.128) OV - Ovarian serous cystadenocarcinoma(155;8.7e-12) TGCGAATTCAGGTTTGTTCAA 0.403000 4 114 0 0 0.009096 0 0 FLG 2312 broad.mit.edu 37 1 152275656 152275656 + Silent SNP G G A rs147335121 TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr1:152275656G>A ENST00000368799.1 - 3 11741 c.11706C>T c.(11704-11706)ccC>ccT p.P3902P FLG-AS1_ENST00000593011.1_RNA|FLG-AS1_ENST00000420707.1_RNA NM_002016.1 NP_002007.1 P20930 FILA_HUMAN filaggrin 3902 Ser-rich. keratinocyte differentiation cytoplasmic membrane-bounded vesicle|intermediate filament calcium ion binding|structural molecule activity autonomic_ganglia(1)|breast(13)|central_nervous_system(5)|cervix(2)|endometrium(38)|haematopoietic_and_lymphoid_tissue(1)|kidney(16)|large_intestine(57)|lung(211)|ovary(13)|pancreas(1)|prostate(15)|skin(24)|stomach(5)|upper_aerodigestive_tract(10)|urinary_tract(12) 424 Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127) LUSC - Lung squamous cell carcinoma(543;0.206) GAGAGGATCCGGGGTGTCTGG 0.517000 Ichthyosis 5 95 0 0 0.014758 0 0 RIMS1 0 broad.mit.edu 37 6 72968798 72968798 + Missense_Mutation SNP T T G TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr6:72968798T>G ENST00000264839.7 + 18 3037 c.3037T>G c.(3037-3039)Tta>Gta p.L1013V RIMS1_ENST00000348717.5_Missense_Mutation_p.L1012V|RIMS1_ENST00000425662.2_Missense_Mutation_p.L406V|RIMS1_ENST00000521978.1_Missense_Mutation_p.L1013V|RIMS1_ENST00000520567.1_Missense_Mutation_p.L1012V|RIMS1_ENST00000401910.3_Missense_Mutation_p.L486V|RIMS1_ENST00000518273.1_Missense_Mutation_p.L1013V|RIMS1_ENST00000517827.1_Missense_Mutation_p.L472V|RIMS1_ENST00000517960.1_Missense_Mutation_p.L1012V|RIMS1_ENST00000491071.2_Missense_Mutation_p.L1013V|RIMS1_ENST00000538414.1_5'UTR|RIMS1_ENST00000522291.1_Missense_Mutation_p.L1012V|RIMS1_ENST00000523963.1_Missense_Mutation_p.L487V Q86UR5 RIMS1_HUMAN regulating synaptic membrane exocytosis 1 1013 calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception cell junction|presynaptic membrane metal ion binding|Rab GTPase binding NS(1)|breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(25)|liver(4)|lung(35)|ovary(9)|pancreas(3)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1) 102 all_epithelial(107;0.179)|all_hematologic(105;0.212) TAGTCAGTATTTATCAGAACA 0.363000 20 37 0 0 0.043863 0 0 ZBTB22 0 broad.mit.edu 37 6 33283609 33283609 + Missense_Mutation SNP C C T rs147840428 by1000genomes TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr6:33283609C>T ENST00000431845.2 - 2 1236 c.1085G>A c.(1084-1086)cGt>cAt p.R362H ZBTB22_ENST00000418724.1_Missense_Mutation_p.R362H NM_005453.4 NP_005444.4 O15209 ZBT22_HUMAN zinc finger and BTB domain containing 22 362 regulation of transcription, DNA-dependent|transcription, DNA-dependent nucleus DNA binding|zinc ion binding breast(1)|central_nervous_system(1)|endometrium(3)|large_intestine(1)|lung(9)|ovary(2)|prostate(1)|urinary_tract(3) 21 ACTCAGGGTACGGACATCACT 0.577000 4 126 0 0 0.009096 0 0 RP11-440G9.1 0 broad.mit.edu 37 6 142860298 142860299 + RNA INS - - T rs143051118 by1000genomes TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr6:142860298_142860299insT ENST00000447311.1 - 0 364 NR_027312.1 ttaggccagtatttttttttta 0.470 2 4 --- --- --- --- ARID2 196528 broad.mit.edu 37 12 46244083 46244084 + Frame_Shift_Ins INS - - A TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chr12:46244083_46244084insA ENST00000334344.6 + 15 2349_2350 c.2177_2178insA c.(2176-2178)aggfs p.R726fs ARID2_ENST00000479608.1_3'UTR|ARID2_ENST00000444670.1_Frame_Shift_Ins_p.R336fs|ARID2_ENST00000422737.1_Frame_Shift_Ins_p.R577fs NM_152641.2 NP_689854.2 Q68CP9 ARID2_HUMAN AT rich interactive domain 2 (ARID, RFX-like) 726 chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent nucleus DNA binding|protein binding|zinc ion binding NS(1)|autonomic_ganglia(1)|breast(7)|central_nervous_system(3)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(21)|liver(20)|lung(34)|ovary(7)|pancreas(1)|prostate(2)|skin(5)|stomach(1)|upper_aerodigestive_tract(2) 116 Lung SC(27;0.192)|Renal(347;0.236) Lung NSC(34;0.106)|all_lung(34;0.22) OV - Ovarian serous cystadenocarcinoma(5;0.00691) GBM - Glioblastoma multiforme(48;0.0153) ATACCCCAGACAGGAGTTCCTG 0.441 """N, S, F""" hepatocellular carcinoma 45 105 --- --- --- --- MXRA5 25878 broad.mit.edu 37 X 3241422 3241422 + Frame_Shift_Del DEL T T - TCGA-EM-A2OV-01A-11D-A202-08 TCGA-EM-A2OV-10A-01D-A202-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2dfe70fd-2650-49c0-b6eb-67df585d063b f1f40ef8-e5bc-440d-915f-048bb283a01c g.chrX:3241422delT ENST00000217939.6 - 5 2458 c.2304delA c.(2302-2304)agfs p.R770fs NM_015419.3 NP_056234.2 Q9NR99 MXRA5_HUMAN matrix-remodelling associated 5 770 extracellular region NS(1)|biliary_tract(1)|breast(4)|central_nervous_system(3)|cervix(2)|endometrium(8)|kidney(2)|large_intestine(32)|lung(81)|ovary(6)|prostate(3)|skin(9)|stomach(3)|urinary_tract(2) 157 all_lung(23;0.00031)|Lung NSC(23;0.000946) TTATCCTTCGTCTAGATTCAA 0.448 8 145 --- --- --- ---