Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MUC4	0	genome.wustl.edu	37	3	195508866	195508866	+	Silent	SNP	T	T	G			TCGA-3Q-A9WF-01A-11D-A423-09	TCGA-3Q-A9WF-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9e39d9a-8ca1-46cb-a1f1-ea3be7a9cbaa	e6cf4c29-9b33-43b2-b2f9-3d8a96ef1e01	3	195508866	195508866	T	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.9585	p.T3195	0.117	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	0	no_errors	0	0	0	40	0	0	32	3	8.57	6	0	0.00	8	0	0.00
LOC101060604	0	genome.wustl.edu	37	16	21484546	21484546	+	RNA	SNP	T	T	C			TCGA-3Q-A9WF-01A-11D-A423-09	TCGA-3Q-A9WF-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9e39d9a-8ca1-46cb-a1f1-ea3be7a9cbaa	e6cf4c29-9b33-43b2-b2f9-3d8a96ef1e01	16	21484546	21484546	T	C	SNP	LOC101060604	ENST00000522841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	30	0	0	22	5	18.52	0	0	0.00	0	0	0.00
LRP8	0	genome.wustl.edu	37	1	53793511	53793512	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-3Q-A9WF-01A-11D-A423-09	TCGA-3Q-A9WF-10A-01D-A426-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9e39d9a-8ca1-46cb-a1f1-ea3be7a9cbaa	e6cf4c29-9b33-43b2-b2f9-3d8a96ef1e01	1	53793511	53793512	TG	0	DEL	LRP8	ENST00000306052	human	ensembl	74_37	-1	known	frame_shift_del	c.74_73	p.Q25fs	0.020:0.031	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	0	no_errors	0	0	0	20	0	0	10	3	23.08	2	0	0.00	0	0	0.00
LRP8	0	genome.wustl.edu	37	1	53793514	53793514	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3Q-A9WF-01A-11D-A423-09	TCGA-3Q-A9WF-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9e39d9a-8ca1-46cb-a1f1-ea3be7a9cbaa	e6cf4c29-9b33-43b2-b2f9-3d8a96ef1e01	1	53793514	53793514	A	0	DEL	LRP8	ENST00000306052	human	ensembl	74_37	-1	known	frame_shift_del	c.71	p.L24fs	0.195	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	0	no_errors	0	0	0	19	0	0	10	3	23.08	2	0	0.00	0	0	0.00