Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-ND5	0	genome.wustl.edu	37	MT	13327	13327	+	Missense_Mutation	SNP	A	A	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	MT	13327	13327	A	G	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	1	known	missense	c.991	p.T331A	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	0	no_errors	0	0	0	24	0	0	0	15	100	0	0	0.00	0	2	100.00
DMD	0	genome.wustl.edu	37	X	31986629	31986629	+	Missense_Mutation	SNP	T	T	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	X	31986629	31986629	T	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6441	p.E2147D	0.999	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	0	no_errors	0	0	0	37	0	0	8	10	55.56	109	0	0.00	20	60	75.00
PKN2	0	genome.wustl.edu	37	1	89250347	89250347	+	Silent	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	1	89250347	89250347	C	T	SNP	PKN2	ENST00000370521	human	ensembl	74_37	1	known	silent	c.1011	p.G337	1	superfamily_C2_dom,smart_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	68	0	0	43	20	31.75	211	0	0.00	121	100	45.05
TNR	0	genome.wustl.edu	37	1	175372743	175372743	+	Missense_Mutation	SNP	T	T	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	1	175372743	175372743	T	C	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	missense	c.509	p.D170G	1	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	0	no_errors	0	0	0	47	0	0	29	23	44.23	160	0	0.00	130	106	44.73
IQSEC1	0	genome.wustl.edu	37	3	12944297	12944297	+	Silent	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	3	12944297	12944297	C	T	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	silent	c.2823	p.A941	1	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	0	no_errors	0	0	0	42	0	0	21	8	27.59	107	0	0.00	63	36	36.36
TMIE	0	genome.wustl.edu	37	3	46751098	46751098	+	Missense_Mutation	SNP	A	A	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	3	46751098	46751098	A	G	SNP	TMIE	ENST00000326431	human	ensembl	74_37	1	known	missense	c.391	p.K131E	1	NULL	NULL	0	no_errors	rs201683042	A->G	0	35	0	0	24	3	11.11	107	2	1.83	80	4	4.71
CCDC51	0	genome.wustl.edu	37	3	48474247	48474247	+	Missense_Mutation	SNP	C	C	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	3	48474247	48474247	C	G	SNP	CCDC51	ENST00000395694	human	ensembl	74_37	-1	known	missense	c.807	p.L269F	0.339	NULL	NULL	0	no_errors	0	0	0	22	0	0	11	5	31.25	125	0	0.00	42	41	48.81
FAM200B	0	genome.wustl.edu	37	4	15689810	15689810	+	Missense_Mutation	SNP	G	G	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	4	15689810	15689810	G	C	SNP	FAM200B	ENST00000422728	human	ensembl	74_37	1	putative	missense	c.1210	p.E404Q	0.993	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,superfamily_PAH	0	no_errors	0	0	0	54	0	0	51	13	20.31	115	0	0.00	147	32	17.88
MAD2L1	0	genome.wustl.edu	37	4	120986968	120986968	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	4	120986968	120986968	C	T	SNP	MAD2L1	ENST00000296509	human	ensembl	74_37	-1	known	missense	c.79	p.G27S	1	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	pfam_HORMA_DNA-bd,superfamily_HORMA_DNA-bd,pfscan_HORMA_DNA-bd	0	no_errors	0	0	0	64	0	0	73	25	25.51	146	0	0.00	127	26	16.99
GALNTL6	0	genome.wustl.edu	37	4	173942726	173942726	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	4	173942726	173942726	C	T	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	1	known	missense	c.1588	p.L530F	1	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	0	no_errors	0	0	0	47	0	0	28	7	20	113	0	0.00	140	41	22.65
EFHC1	0	genome.wustl.edu	37	6	52344482	52344482	+	Silent	SNP	T	T	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	6	52344482	52344482	T	C	SNP	EFHC1	ENST00000371068	human	ensembl	74_37	1	known	silent	c.1537	p.L513	0.104	smart_Uncharacterised_DM10	pfam_DUF1126,smart_Uncharacterised_DM10,pfscan_EF_hand_dom	0	no_errors	0	0	0	81	0	0	39	26	40	174	0	0.00	110	49	30.82
TBX18	0	genome.wustl.edu	37	6	85453986	85453986	+	Missense_Mutation	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	6	85453986	85453986	G	A	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.997	p.R333C	1	smart_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	0	no_errors	0	0	0	63	0	0	34	18	34.62	240	2	0.83	118	56	32.18
GJB7	0	genome.wustl.edu	37	6	87994415	87994415	+	Silent	SNP	G	G	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	6	87994415	87994415	G	C	SNP	GJB7	ENST00000296882	human	ensembl	74_37	-1	known	silent	c.216	p.S72	0.999	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	0	no_errors	0	0	0	34	0	0	17	10	37.04	242	0	0.00	140	81	36.65
REV3L	0	genome.wustl.edu	37	6	111726735	111726735	+	Missense_Mutation	SNP	T	T	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	6	111726735	111726735	T	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.503	p.N168S	1	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	0	no_errors	rs547946785	T->C	0.9998,0.0001997	78	0	0	44	17	27.87	210	0	0.00	108	72	40.00
OPRM1	0	genome.wustl.edu	37	6	154412608	154412608	+	Splice_Site	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	6	154412608	154412608	G	T	SNP	OPRM1	ENST00000434900	human	ensembl	74_37	1	known	splice_site	c.1443+1	e4+1	1	0	0	0	no_errors	0	0	0	25	0	0	32	3	8.57	239	0	0.00	171	13	6.99
GET4	0	genome.wustl.edu	37	7	927107	927107	+	Missense_Mutation	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	7	927107	927107	G	T	SNP	GET4	ENST00000265857	human	ensembl	74_37	1	known	missense	c.417	p.K139N	1	pfam_UPF0363	pfam_UPF0363	0	no_errors	0	0	0	67	0	0	35	27	43.55	106	0	0.00	47	15	24.19
RSPH10B	0	genome.wustl.edu	37	7	5983557	5983557	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	7	5983557	5983557	C	T	SNP	RSPH10B	ENST00000337579	human	ensembl	74_37	-1	known	missense	c.1594	p.A532T	1	NULL	pfam_MORN,smart_MORN	0	no_errors	0	0	0	93	0	0	56	21	27.27	123	0	0.00	92	33	26.19
MPP6	0	genome.wustl.edu	37	7	24727232	24727232	+	Nonstop_Mutation	SNP	G	G	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	7	24727232	24727232	G	C	SNP	MPP6	ENST00000222644	human	ensembl	74_37	1	known	nonstop	c.1622	p.*541S	1	NULL	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	0	no_errors	0	0	0	75	0	0	43	11	20.37	224	0	0.00	188	45	19.23
MSR1	0	genome.wustl.edu	37	8	16026357	16026357	+	Silent	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	8	16026357	16026357	C	T	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	silent	c.240	p.T80	0.992	NULL	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	0	no_errors	0	0	0	45	0	0	13	18	58.06	183	0	0.00	119	132	52.38
GEM	0	genome.wustl.edu	37	8	95262574	95262574	+	Silent	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	8	95262574	95262574	G	T	SNP	GEM	ENST00000297596	human	ensembl	74_37	-1	known	silent	c.855	p.L285	1	pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	53	0	0	78	23	22.77	188	1	0.53	314	63	16.71
ERP44	0	genome.wustl.edu	37	9	102784465	102784465	+	Silent	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	9	102784465	102784465	G	T	SNP	ERP44	ENST00000262455	human	ensembl	74_37	-1	known	silent	c.330	p.L110	1	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	0	no_errors	0	0	0	51	0	0	7	38	84.44	204	0	0.00	50	132	72.53
FAM69B	0	genome.wustl.edu	37	9	139616628	139616628	+	Missense_Mutation	SNP	G	G	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	9	139616628	139616628	G	C	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	1	known	missense	c.358	p.E120Q	0.003	NULL	pfam_FAM69_kinase_dom	0	no_errors	0	0	0	70	0	0	26	21	44.68	123	0	0.00	49	28	36.36
ARMC4	0	genome.wustl.edu	37	10	28233763	28233763	+	Silent	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	10	28233763	28233763	G	A	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	silent	c.1515	p.T505	0.001	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	0	no_errors	rs369884669	G->A	0	52	0	0	52	21	28.77	249	0	0.00	200	76	27.54
KIF18A	0	genome.wustl.edu	37	11	28106202	28106202	+	Missense_Mutation	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	11	28106202	28106202	G	A	SNP	KIF18A	ENST00000263181	human	ensembl	74_37	-1	known	missense	c.1051	p.R351W	1	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	0	no_errors	rs151125849	G->A	0.9996,0.0003994	41	0	0	25	18	41.86	194	0	0.00	190	66	25.68
NTF3	0	genome.wustl.edu	37	12	5603798	5603798	+	Missense_Mutation	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	12	5603798	5603798	G	A	SNP	NTF3	ENST00000423158	human	ensembl	74_37	1	known	missense	c.457	p.A153T	0.993	pirsf_Nerve_growth_factor-like	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pirsf_Nerve_growth_factor-like,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Neurotrophin-3	0	no_errors	0	0	0	50	0	0	43	16	26.67	124	0	0.00	183	33	15.21
NANOGP1	0	genome.wustl.edu	37	12	8051634	8051634	+	RNA	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	12	8051634	8051634	C	T	SNP	NANOGP1	ENST00000607111	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	39	0	0	59	12	16.9	23	0	0.00	38	7	15.56
TPCN1	0	genome.wustl.edu	37	12	113733834	113733834	+	Missense_Mutation	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	12	113733834	113733834	G	A	SNP	TPCN1	ENST00000541517	human	ensembl	74_37	1	known	missense	c.2620	p.A874T	0	NULL	pfam_Ion_trans_dom	0	no_errors	0	0	0	39	0	0	43	23	34.85	47	0	0.00	61	30	32.97
TPCN1	0	genome.wustl.edu	37	12	113733835	113733835	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	12	113733835	113733835	C	T	SNP	TPCN1	ENST00000541517	human	ensembl	74_37	1	known	missense	c.2621	p.A874V	0.792	NULL	pfam_Ion_trans_dom	0	no_errors	0	0	0	39	0	0	45	24	34.78	47	0	0.00	60	30	33.33
DNAH10	0	genome.wustl.edu	37	12	124408355	124408355	+	Missense_Mutation	SNP	T	T	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	12	124408355	124408355	T	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	1	known	missense	c.11198	p.I3733N	1	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	0	no_errors	0	0	0	63	0	0	118	13	9.92	229	0	0.00	314	62	16.49
FAM179B	0	genome.wustl.edu	37	14	45433576	45433576	+	Missense_Mutation	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	14	45433576	45433576	G	T	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	1	known	missense	c.1952	p.S651I	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	0	no_errors	0	0	0	31	0	0	39	11	22	215	0	0.00	189	74	28.03
ATP10A	0	genome.wustl.edu	37	15	25924583	25924583	+	Missense_Mutation	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	15	25924583	25924583	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.4405	p.R1469C	0.001	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	0	no_errors	rs147041252	G->A	0.9998,0.0001997	64	0	0	43	13	23.21	85	0	0.00	88	27	23.48
OCA2	0	genome.wustl.edu	37	15	28263684	28263684	+	Silent	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	15	28263684	28263684	G	A	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	silent	c.666	p.H222	0	NULL	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	0	no_errors	0	0	0	71	0	0	70	13	15.66	58	0	0.00	43	8	15.69
CCDC144CP	0	genome.wustl.edu	37	17	20243264	20243264	+	RNA	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	17	20243264	20243264	G	A	SNP	CCDC144CP	ENST00000580574	human	ensembl	74_37	1	known	rna	NULL	NULL	0.004	0	0	0	no_errors	0	0	0	245	0	0	125	234	65.18	147	0	0.00	81	152	65.24
TEX14	0	genome.wustl.edu	37	17	56663351	56663351	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	17	56663351	56663351	C	T	SNP	TEX14	ENST00000240361	human	ensembl	74_37	-1	known	missense	c.2899	p.A967T	0.144	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	67	0	0	42	53	55.79	133	0	0.00	70	110	61.11
DSG3	0	genome.wustl.edu	37	18	29045307	29045307	+	Missense_Mutation	SNP	G	G	C			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	18	29045307	29045307	G	C	SNP	DSG3	ENST00000257189	human	ensembl	74_37	1	known	missense	c.1298	p.G433A	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	0	no_errors	0	0	0	110	0	0	140	13	8.5	285	0	0.00	365	43	10.51
RNF138	0	genome.wustl.edu	37	18	29706742	29706742	+	Silent	SNP	A	A	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	18	29706742	29706742	A	G	SNP	RNF138	ENST00000261593	human	ensembl	74_37	1	known	silent	c.648	p.Q216	1	NULL	pfam_Znf_MIZ,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	0	no_errors	0	0	0	120	0	0	151	38	20.11	190	0	0.00	261	79	23.24
ZNF730	0	genome.wustl.edu	37	19	23329318	23329318	+	Missense_Mutation	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	19	23329318	23329318	G	A	SNP	ZNF730	ENST00000597761	human	ensembl	74_37	1	known	missense	c.1472	p.R491Q	0	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	59	0	0	30	38	55.88	212	0	0.00	65	123	65.43
FFAR3	0	genome.wustl.edu	37	19	35849879	35849879	+	Silent	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	19	35849879	35849879	C	T	SNP	FFAR3	ENST00000327809	human	ensembl	74_37	1	known	silent	c.87	p.L29	0.89	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GPR40-rel_orph	0	no_errors	0	0	0	85	0	0	61	11	15.28	126	0	0.00	93	15	13.89
RYR1	0	genome.wustl.edu	37	19	39075660	39075660	+	Silent	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	19	39075660	39075660	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	1	known	silent	c.14724	p.D4908	0.992	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	0	no_errors	0	0	0	79	0	0	39	22	36.07	220	0	0.00	136	39	22.29
ESF1	0	genome.wustl.edu	37	20	13753210	13753210	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	20	13753210	13753210	C	T	SNP	ESF1	ENST00000202816	human	ensembl	74_37	-1	known	missense	c.1201	p.G401R	1	NULL	pfam_NUC153	0	no_errors	0	0	0	35	0	0	32	12	27.27	210	0	0.00	192	96	33.33
LAMA5	0	genome.wustl.edu	37	20	60895897	60895897	+	Silent	SNP	G	G	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	20	60895897	60895897	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.6546	p.G2182	0	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	0	no_errors	0	0	0	67	0	0	25	23	46.94	60	0	0.00	20	30	60.00
CDKN2A	0	genome.wustl.edu	37	9	21974777	21974780	+	Frame_Shift_Del	DEL	GCCA	GCCA	-			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	GCCA	GCCA	GCCA	-	GCCA	GCCA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	9	21974777	21974780	GCCA	0	DEL	CDKN2A	ENST00000446177	human	ensembl	74_37	-1	known	frame_shift_del	c.50_47	p.L16fs	0.001:0.000:0.027:0.068	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	rs587782206	GGCCA->G	0	37	0	0	6	16	72.73	71	0	0.00	25	18	41.86
TP53	0	genome.wustl.edu	37	17	7577096	7577096	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	17	7577096	7577096	T	0	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.842	p.D281fs	1	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	0	no_errors	0	0	0	41	0	0	8	36	81.82	222	0	0.00	37	100	72.99
EFCAB2	0	genome.wustl.edu	37	1	245285221	245285221	+	Splice_Site	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	1	245285221	245285221	G	T	SNP	EFCAB2	ENST00000366522	human	ensembl	74_37	1	known	splice_site	c.782-1	e8-1	0.009	0	0	0	no_errors	0	0	0	8	0	0	20	4	16.67	0	0	0.00	0	0	0.00
RABL6	0	genome.wustl.edu	37	9	139731851	139731851	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	9	139731851	139731851	C	T	SNP	RABL6	ENST00000371663	human	ensembl	74_37	1	known	missense	c.866	p.A289V	0.98	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	0	no_errors	0	0	0	77	0	0	41	4	8.89	13	0	0.00	3	0	0.00
ENSG00000223180	0	genome.wustl.edu	37	15	84284968	84284968	+	RNA	SNP	T	T	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	15	84284968	84284968	T	G	SNP	ENSG00000223180	ENST00000411248	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.008	0	0	0	no_errors	0	0	0	47	0	0	37	44	54.32	0	0	0.00	0	0	0.00
NPIPA2	0	genome.wustl.edu	37	16	14859247	14859247	+	Missense_Mutation	SNP	C	C	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	16	14859247	14859247	C	T	SNP	NPIPA2	ENST00000529166	human	ensembl	74_37	1	novel	missense	c.1087	p.R363W	0.065	NULL	NULL	0	no_errors	0	0	0	33	1	2.86	80	8	9.09	0	0	0.00	0	0	0.00
KRTAP9-7	0	genome.wustl.edu	37	17	39432066	39432066	+	Silent	SNP	G	G	T			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	17	39432066	39432066	G	T	SNP	KRTAP9-7	ENST00000391354	human	ensembl	74_37	1	known	silent	c.117	p.V39	0	NULL	NULL	0	no_errors	0	0	0	70	0	0	136	18	11.69	0	0	0.00	0	0	0.00
AHDC1	0	genome.wustl.edu	37	1	27878369	27878370	+	Frame_Shift_Ins	INS	-	-	G			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	1	27878369	27878370	0	G	INS	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	frame_shift_ins	c.258_257	p.R87fs	0.012:0.992	NULL	NULL	0	no_errors	0	0	0	21	0	0	4	2	33.33	16	0	0.00	8	0	0.00
PTPRZ1	0	genome.wustl.edu	37	7	121513383	121513384	+	RNA	DEL	CA	CA	-			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	7	121513383	121513384	CA	0	DEL	PTPRZ1	ENST00000471837	human	ensembl	74_37	1	known	rna	NULL	NULL	0.002:0.001	0	0	0	no_errors	rs386360108	TCA->T	0	9	1	10	9	9	50	0	0	0.00	0	0	0.00
MCM3AP-AS1	0	genome.wustl.edu	37	21	47662899	47662900	+	RNA	INS	-	-	A			TCGA-3S-A8YW-01A-11D-A423-09	TCGA-3S-A8YW-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	67b5676a-84a1-44fb-9301-b962911b7f93	b9e36959-d9a1-43d8-a24f-c35495eb6d7a	21	47662899	47662900	0	A	INS	MCM3AP-AS1	ENST00000421927	human	ensembl	74_37	1	known	rna	NULL	NULL	0.000:0.000	0	0	0	no_errors	0	0	0	21	0	0	8	4	33.33	0	0	0.00	0	0	0.00