Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
GPR64	0	genome.wustl.edu	37	X	19017307	19017307	+	Silent	SNP	C	C	G			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	X	19017307	19017307	C	G	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	silent	c.2421	p.V807	0.918	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	0	no_errors	0	0	0	68	0	0	79	25	24.04	163	0	0.00	174	45	20.45
SLC4A3	0	genome.wustl.edu	37	2	220500455	220500455	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	2	220500455	220500455	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	1	known	missense	c.2114	p.T705M	0.999	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	0	no_errors	0	0	0	63	0	0	55	5	8.33	79	0	0.00	89	8	8.25
FAM105B	0	genome.wustl.edu	37	5	14673767	14673767	+	Missense_Mutation	SNP	C	C	A			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	5	14673767	14673767	C	A	SNP	FAM105B	ENST00000284274	human	ensembl	74_37	1	known	missense	c.169	p.R57S	1	prints_FAM105B	prints_FAM105,prints_FAM105B,prints_FAM105A	0	no_errors	0	0	0	109	0	0	147	13	8.12	387	0	0.00	283	21	6.89
COL14A1	0	genome.wustl.edu	37	8	121219208	121219208	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	8	121219208	121219208	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	1	known	missense	c.1066	p.P356S	1	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	0	no_errors	0	0	0	56	1	1.75	59	12	16.9	260	0	0.00	237	52	17.99
TRAF2	0	genome.wustl.edu	37	9	139811066	139811066	+	Missense_Mutation	SNP	C	C	A			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	9	139811066	139811066	C	A	SNP	TRAF2	ENST00000359662	human	ensembl	74_37	1	known	missense	c.833	p.T278K	0.989	superfamily_TRAF-like,pirsf_TNF_rcpt--assoc_TRAF,pfscan_Znf_TRAF	pfam_MATH,pfam_Znf_C3HC4_RING-type,superfamily_TRAF-like,smart_Znf_RING,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	0	no_errors	0	0	0	33	0	0	34	4	10.53	120	0	0.00	99	19	16.10
HCN4	0	genome.wustl.edu	37	15	73617504	73617504	+	Silent	SNP	C	C	A			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	15	73617504	73617504	C	A	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	silent	c.1770	p.V590	1	superfamily_cNMP-bd-like	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	0	no_errors	0	0	0	36	0	0	30	8	21.05	110	1	0.90	107	14	11.57
MORC2	0	genome.wustl.edu	37	22	31331005	31331005	+	Missense_Mutation	SNP	C	C	G			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	22	31331005	31331005	C	G	SNP	MORC2	ENST00000397641	human	ensembl	74_37	-1	known	missense	c.1956	p.K652N	0.044	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Carb-bd_dom,pfscan_Znf_CW	0	no_errors	0	0	0	17	0	0	21	7	25	71	0	0.00	74	15	16.85
PCDHA6	0	genome.wustl.edu	37	5	140207965	140207965	+	Missense_Mutation	SNP	G	G	C			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	5	140207965	140207965	G	C	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	1	known	missense	c.289	p.G97R	0.985	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	0	no_errors	rs150162226	G->C,T	0	105	1	0.94	116	15	11.45	0	0	0.00	0	0	0.00
GIGYF1	0	genome.wustl.edu	37	7	100284306	100284306	+	Silent	SNP	C	C	T			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	7	100284306	100284306	C	T	SNP	GIGYF1	ENST00000275732	human	ensembl	74_37	-1	known	silent	c.660	p.R220	1	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	0	no_errors	0	0	0	33	0	0	34	3	8.11	8	0	0.00	8	0	0.00
SEC16A	0	genome.wustl.edu	37	9	139342830	139342830	+	Missense_Mutation	SNP	T	T	G			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	9	139342830	139342830	T	G	SNP	SEC16A	ENST00000313084	human	ensembl	74_37	-1	known	missense	c.202	p.T68P	0.251	NULL	NULL	0	no_errors	0	0	0	16	1	5.88	19	6	24	0	0	0.00	0	0	0.00
UNC93B1	0	genome.wustl.edu	37	11	67759316	67759316	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	11	67759316	67759316	C	T	SNP	UNC93B1	ENST00000227471	human	ensembl	74_37	-1	known	missense	c.1492	p.V498M	0.997	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	0	no_errors	rs4014596	C->T	0	26	0	0	36	4	10	0	0	0.00	0	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102294758	102294758	+	RNA	SNP	G	G	A			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	15	102294758	102294758	G	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.988	0	0	0	no_errors	rs370993817	G->A	0	13	1	6.67	30	6	16.67	1	0	0.00	5	0	0.00
NOTUM	0	genome.wustl.edu	37	17	79918730	79918730	+	Frame_Shift_Del	DEL	C	C	-			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	17	79918730	79918730	C	0	DEL	NOTUM	ENST00000409678	human	ensembl	74_37	-1	known	frame_shift_del	c.56	p.G19fs	1	NULL	pfam_NOTUM	0	no_errors	0	0	0	14	0	0	4	2	33.33	2	0	0.00	3	0	0.00
CAPNS1	0	genome.wustl.edu	37	19	36632025	36632030	+	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			TCGA-4V-A9QL-01A-11D-A423-09	TCGA-4V-A9QL-11A-11D-A426-09	GGCGGC	GGCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c70258-8a14-46c4-b3cb-221b5105fd09	f8154ac8-0d41-40e1-869f-913e3885bad6	19	36632025	36632030	GGCGGC	0	DEL	CAPNS1	ENST00000588780	human	ensembl	74_37	1	known	in_frame_del	c.112_117	p.GG41in_frame_del	0.907:0.986:0.987:1.000:1.000:0.998	NULL	pfscan_EF_hand_dom	0	no_errors	0	0	0	23	0	0	5	2	28.57	9	0	0.00	4	0	0.00