Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
HLX	0	genome.wustl.edu	37	1	221054597	221054597	+	Silent	SNP	C	C	G			TCGA-4V-A9QU-01A-11D-A423-09	TCGA-4V-A9QU-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d9e531d5-78eb-488b-a859-3e491dfd66c4	241c8049-d164-4789-8149-ad2484ccd18b	1	221054597	221054597	C	G	SNP	HLX	ENST00000366903	human	ensembl	74_37	1	known	silent	c.654	p.P218	0.166	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	0	no_errors	0	0	0	44	0	0	40	5	11.11	182	0	0.00	119	15	11.19
ENSG00000216089	0	genome.wustl.edu	37	4	160216906	160216906	+	RNA	SNP	T	T	C			TCGA-4V-A9QU-01A-11D-A423-09	TCGA-4V-A9QU-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d9e531d5-78eb-488b-a859-3e491dfd66c4	241c8049-d164-4789-8149-ad2484ccd18b	4	160216906	160216906	T	C	SNP	ENSG00000216089	ENST00000401270	human	ensembl	74_37	1	novel	rna	NULL	NULL	0	0	0	0	no_errors	rs10024829	T->C	0	36	1	2.7	31	11	25.58	50	0	0.00	22	2	8.33
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-4V-A9QU-01A-11D-A423-09	TCGA-4V-A9QU-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d9e531d5-78eb-488b-a859-3e491dfd66c4	241c8049-d164-4789-8149-ad2484ccd18b	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	284	0	0	420	36	7.89	169	0	0.00	125	19	13.19
NUAK1	0	genome.wustl.edu	37	12	106461007	106461007	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QU-01A-11D-A423-09	TCGA-4V-A9QU-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	d9e531d5-78eb-488b-a859-3e491dfd66c4	241c8049-d164-4789-8149-ad2484ccd18b	12	106461007	106461007	C	T	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1559	p.R520Q	1	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	rs117517173	C->T	0.9996,0.0003994	41	0	0	21	4	16	120	1	0.83	73	10	12.05
LHFPL3	0	genome.wustl.edu	37	7	103969251	103969251	+	Silent	SNP	C	C	T			TCGA-4V-A9QU-01A-11D-A423-09	TCGA-4V-A9QU-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9e531d5-78eb-488b-a859-3e491dfd66c4	241c8049-d164-4789-8149-ad2484ccd18b	7	103969251	103969251	C	T	SNP	LHFPL3	ENST00000535008	human	ensembl	74_37	1	known	silent	c.24	p.A8	1	NULL	pfam_Lipome_HGMIC_fus_partner-like	0	no_errors	0	0	0	26	0	0	20	2	9.09	10	0	0.00	8	0	0.00
RUNX3	0	genome.wustl.edu	37	1	25256279	25256281	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-4V-A9QU-01A-11D-A423-09	TCGA-4V-A9QU-10A-01D-A426-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d9e531d5-78eb-488b-a859-3e491dfd66c4	241c8049-d164-4789-8149-ad2484ccd18b	1	25256279	25256281	GCC	0	DEL	RUNX3	ENST00000338888	human	ensembl	74_37	-1	known	in_frame_del	c.123_121	p.G41in_frame_del	0.986:0.973:0.995	pirsf_TF_Runt-rel_RUNX	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	0	no_errors	0	0	0	18	0	0	10	3	23.08	7	0	0.00	6	0	0.00