Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
STARD6	0	genome.wustl.edu	37	18	51855782	51855782	+	Silent	SNP	A	A	T			TCGA-4X-A9F9-01A-11D-A423-09	TCGA-4X-A9F9-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18a079f8-138d-4f90-adfa-6799da8a6018	54bbc237-6add-4212-af06-712d0e988380	18	51855782	51855782	A	T	SNP	STARD6	ENST00000307844	human	ensembl	74_37	-1	known	silent	c.414	p.P138	1	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	0	no_errors	0	0	0	198	0	0	108	9	7.63	215	2	0.92	207	10	4.61
IRF9	0	genome.wustl.edu	37	14	24633132	24633134	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-4X-A9F9-01A-11D-A423-09	TCGA-4X-A9F9-10A-01D-A426-09	AGC	AGC	AGC	-	AGC	AGC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18a079f8-138d-4f90-adfa-6799da8a6018	54bbc237-6add-4212-af06-712d0e988380	14	24633132	24633134	AGC	0	DEL	IRF9	ENST00000396864	human	ensembl	74_37	1	known	in_frame_del	c.541_543	p.S184in_frame_del	0.064:0.076:0.081	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	0	no_errors	0	0	0	21	0	0	19	3	13.64	83	1	1.19	47	3	6.00
MT-RNR2	0	genome.wustl.edu	37	MT	2135	2135	+	RNA	SNP	A	A	C			TCGA-4X-A9F9-01A-11D-A423-09	TCGA-4X-A9F9-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18a079f8-138d-4f90-adfa-6799da8a6018	54bbc237-6add-4212-af06-712d0e988380	MT	2135	2135	A	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	52	0	0	8	3	27.27	2	0	0.00	0	0	0.00
MT-ND5	0	genome.wustl.edu	37	MT	12854	12854	+	Missense_Mutation	SNP	T	T	C			TCGA-4X-A9F9-01A-11D-A423-09	TCGA-4X-A9F9-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18a079f8-138d-4f90-adfa-6799da8a6018	54bbc237-6add-4212-af06-712d0e988380	MT	12854	12854	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	1	known	missense	c.518	p.L173P	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	0	no_errors	0	0	0	18	0	0	6	3	33.33	2	0	0.00	0	0	0.00
IVL	0	genome.wustl.edu	37	1	152882981	152882981	+	Silent	SNP	A	A	T			TCGA-4X-A9F9-01A-11D-A423-09	TCGA-4X-A9F9-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18a079f8-138d-4f90-adfa-6799da8a6018	54bbc237-6add-4212-af06-712d0e988380	1	152882981	152882981	A	T	SNP	IVL	ENST00000368764	human	ensembl	74_37	1	known	silent	c.708	p.P236	0	pfam_Involucrin_rpt	pfam_Involucrin_N,pfam_Involucrin_rpt	0	no_errors	rs62637699	A->T	0	21	0	0	19	8	29.63	0	0	0.00	0	0	0.00