Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
UPRT	0	genome.wustl.edu	37	X	74494112	74494112	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FC-01A-11D-A423-09	TCGA-4X-A9FC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	74eec9b6-c99e-4733-b870-92498834fe39	00b687bc-8abf-4f6c-8e46-35094fb9c62b	X	74494112	74494112	C	T	SNP	UPRT	ENST00000373383	human	ensembl	74_37	1	known	missense	c.23	p.P8L	0.002	NULL	pfam_PRibTrfase_dom	0	no_errors	0	0	0	69	0	0	86	8	8.51	188	0	0.00	181	8	4.19
CYB5RL	0	genome.wustl.edu	37	1	54649868	54649868	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FC-01A-11D-A423-09	TCGA-4X-A9FC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	74eec9b6-c99e-4733-b870-92498834fe39	00b687bc-8abf-4f6c-8e46-35094fb9c62b	1	54649868	54649868	C	T	SNP	CYB5RL	ENST00000419823	human	ensembl	74_37	-1	known	missense	c.506	p.G169E	1	pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Phe_hydroxylase	pfam_OxRdtase_FAD-bd_dom,pfam_Oxidoreductase-like_N,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Phe_hydroxylase	0	no_errors	0	0	0	59	0	0	60	5	7.69	250	0	0.00	202	10	4.72
MUC16	0	genome.wustl.edu	37	19	9091798	9091798	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FC-01A-11D-A423-09	TCGA-4X-A9FC-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	74eec9b6-c99e-4733-b870-92498834fe39	00b687bc-8abf-4f6c-8e46-35094fb9c62b	19	9091798	9091798	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.17	p.G6D	0.006	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	0	no_errors	rs374211611	C->T	0	44	0	0	48	6	11.11	159	0	0.00	144	7	4.61
TMTC1	0	genome.wustl.edu	37	12	29936577	29936577	+	Silent	SNP	T	T	C			TCGA-4X-A9FC-01A-11D-A423-09	TCGA-4X-A9FC-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	74eec9b6-c99e-4733-b870-92498834fe39	00b687bc-8abf-4f6c-8e46-35094fb9c62b	12	29936577	29936577	T	C	SNP	TMTC1	ENST00000539277	human	ensembl	74_37	-1	putative	silent	c.108	p.A36	0.995	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	0	no_errors	0	0	0	22	0	0	25	4	13.79	2	0	0.00	3	0	0.00
KIR2DL3	0	genome.wustl.edu	37	19	55255454	55255454	+	Silent	SNP	A	A	G			TCGA-4X-A9FC-01A-11D-A423-09	TCGA-4X-A9FC-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	74eec9b6-c99e-4733-b870-92498834fe39	00b687bc-8abf-4f6c-8e46-35094fb9c62b	19	55255454	55255454	A	G	SNP	KIR2DL3	ENST00000434419	human	ensembl	74_37	1	known	silent	c.582	p.G194	0	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	0	no_errors	rs201431907	A->G	0	14	0	0	13	8	38.1	0	0	0.00	0	0	0.00