Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
TNN	0	genome.wustl.edu	37	1	175046945	175046945	+	Missense_Mutation	SNP	T	T	A			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	1	175046945	175046945	T	A	SNP	TNN	ENST00000239462	human	ensembl	74_37	1	known	missense	c.391	p.C131S	1	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	0	no_errors	0	0	0	24	0	0	15	5	25	121	0	0.00	71	7	8.97
NBAS	0	genome.wustl.edu	37	2	15542383	15542383	+	Missense_Mutation	SNP	T	T	C			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	2	15542383	15542383	T	C	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.2980	p.I994V	0.001	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	0	no_errors	rs538790933	T->C	0	76	0	0	80	8	9.09	271	0	0.00	159	10	5.88
GRM7	0	genome.wustl.edu	37	3	7782044	7782044	+	Missense_Mutation	SNP	G	G	C			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	3	7782044	7782044	G	C	SNP	GRM7	ENST00000357716	human	ensembl	74_37	1	known	missense	c.2699	p.S900T	1	prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	0	no_errors	0	0	0	44	0	0	36	7	16.28	340	0	0.00	258	20	7.19
NR2C2	0	genome.wustl.edu	37	3	15084513	15084513	+	Nonstop_Mutation	SNP	T	T	C			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	3	15084513	15084513	T	C	SNP	NR2C2	ENST00000323373	human	ensembl	74_37	1	known	nonstop	c.1846	p.*616Q	1	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	0	no_errors	0	0	0	27	0	0	29	3	9.38	252	0	0.00	182	14	7.11
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	302	0	0	307	37	10.66	141	0	0.00	102	7	6.42
TRIM3	0	genome.wustl.edu	37	11	6477334	6477334	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	11	6477334	6477334	C	T	SNP	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	missense	c.1501	p.V501M	1	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	0	no_errors	0	0	0	54	0	0	47	5	9.62	265	0	0.00	147	22	13.02
OR8B3	0	genome.wustl.edu	37	11	124266673	124266673	+	Missense_Mutation	SNP	G	G	C			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	11	124266673	124266673	G	C	SNP	OR8B3	ENST00000354597	human	ensembl	74_37	-1	known	missense	c.575	p.T192S	0.696	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	63	0	0	53	5	8.62	114	1	0.87	65	10	13.33
RBM42	0	genome.wustl.edu	37	19	36124015	36124015	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	19	36124015	36124015	C	T	SNP	RBM42	ENST00000262633	human	ensembl	74_37	1	known	missense	c.545	p.P182L	1	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	0	no_errors	0	0	0	66	0	0	42	6	12.5	77	0	0.00	49	5	9.26
ENSG00000270726	0	genome.wustl.edu	37	X	155250722	155250722	+	RNA	SNP	T	T	C			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	X	155250722	155250722	T	C	SNP	ENSG00000270726	ENST00000285718	human	ensembl	74_37	1	known	rna	NULL	NULL	0.019	0	0	0	no_errors	0	0	0	47	0	0	63	9	12.5	0	0	0.00	0	0	0.00
SPDYE2B	0	genome.wustl.edu	37	7	102294074	102294074	+	Missense_Mutation	SNP	T	T	C			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	7	102294074	102294074	T	C	SNP	SPDYE2B	ENST00000436228	human	ensembl	74_37	1	known	missense	c.337	p.S113P	0.002	NULL	pfam_Cell_cycle_regulatory_Spy1	0	no_errors	0	0	0	16	0	0	21	8	27.59	0	0	0.00	0	0	0.00
ENSG00000266021	0	genome.wustl.edu	37	9	68997433	68997433	+	RNA	SNP	C	C	T			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	9	68997433	68997433	C	T	SNP	ENSG00000266021	ENST00000583495	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0	0	0	0	no_errors	rs77309871	C->T	0	30	1	3.23	10	4	26.67	0	0	0.00	0	0	0.00
UNC93B1	0	genome.wustl.edu	37	11	67759316	67759316	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	11	67759316	67759316	C	T	SNP	UNC93B1	ENST00000227471	human	ensembl	74_37	-1	known	missense	c.1492	p.V498M	0.997	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	0	no_errors	rs4014596	C->T	0	23	0	0	21	5	19.23	0	0	0.00	0	0	0.00
SP5	0	genome.wustl.edu	37	2	171572868	171572868	+	Frame_Shift_Del	DEL	C	C	-			TCGA-X7-A8DJ-01A-11D-A423-09	TCGA-X7-A8DJ-10B-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71043725-cf77-4331-8fdf-d52b86ad1cb8	69c7c375-191a-4a66-9211-22806cd9bdc1	2	171572868	171572868	C	0	DEL	SP5	ENST00000375281	human	ensembl	74_37	1	known	frame_shift_del	c.151	p.P52fs	0.993	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	18	0	0	4	3	42.86	11	0	0.00	10	0	0.00