Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MAGEB16	0	genome.wustl.edu	37	X	35820519	35820519	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	X	35820519	35820519	G	T	SNP	MAGEB16	ENST00000399992	human	ensembl	74_37	1	known	missense	c.302	p.C101F	0	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	0	no_errors	0	0	0	65	0	0	23	15	39.47	106	0	0.00	76	88	53.66
RPS6KA6	0	genome.wustl.edu	37	X	83359602	83359602	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	X	83359602	83359602	C	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1519	p.D507Y	1	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	189	0	0	122	121	49.79	322	0	0.00	228	200	46.73
NXF2	0	genome.wustl.edu	37	X	101581401	101581401	+	Silent	SNP	C	C	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	X	101581401	101581401	C	T	SNP	NXF2	ENST00000330252	human	ensembl	74_37	1	known	silent	c.1854	p.P618	0.078	pfam_TAP_C_dom,superfamily_UBA-like,smart_TAP_C_dom	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	0	no_errors	0	0	0	460	0	0	417	103	19.81	219	0	0.00	278	69	19.88
TDGF1P3	0	genome.wustl.edu	37	X	109764188	109764188	+	RNA	SNP	A	A	G			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	X	109764188	109764188	A	G	SNP	TDGF1P3	ENST00000602699	human	ensembl	74_37	1	known	rna	NULL	NULL	0.013	0	0	0	no_errors	0	0	0	13	0	0	25	13	34.21	228	0	0.00	369	173	31.86
PLXNA3	0	genome.wustl.edu	37	X	153696250	153696250	+	Nonsense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	X	153696250	153696250	C	A	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	1	known	nonsense	c.3726	p.Y1242*	1	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	0	no_errors	0	0	0	53	0	0	26	7	21.21	39	0	0.00	45	31	40.79
WDR65	0	genome.wustl.edu	37	1	43685092	43685092	+	Missense_Mutation	SNP	T	T	G			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	1	43685092	43685092	T	G	SNP	WDR65	ENST00000372492	human	ensembl	74_37	1	novel	missense	c.2131	p.L711V	1	superfamily_Quinonprotein_ADH-like_supfam	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	0	no_errors	0	0	0	50	0	0	7	30	81.08	265	1	0.37	28	183	85.92
LTBP1	0	genome.wustl.edu	37	2	33488415	33488415	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	2	33488415	33488415	C	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	1	known	missense	c.2576	p.S859Y	1	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	0	no_errors	0	0	0	64	0	0	0	20	100	219	0	0.00	14	116	89.23
MCFD2	0	genome.wustl.edu	37	2	47132657	47132657	+	Missense_Mutation	SNP	T	T	C			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	2	47132657	47132657	T	C	SNP	MCFD2	ENST00000319466	human	ensembl	74_37	-1	known	missense	c.386	p.D129G	1	pfscan_EF_hand_dom	pfscan_EF_hand_dom	0	no_errors	0	0	0	55	0	0	4	16	80	223	0	0.00	26	120	82.19
DIS3L2	0	genome.wustl.edu	37	2	232952373	232952373	+	Silent	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	2	232952373	232952373	C	A	SNP	DIS3L2	ENST00000325385	human	ensembl	74_37	1	known	silent	c.543	p.I181	0	NULL	NULL	0	no_errors	0	0	0	38	0	0	2	27	93.1	216	0	0.00	32	118	78.67
POGLUT1	0	genome.wustl.edu	37	3	119204216	119204216	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	3	119204216	119204216	C	A	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	1	known	missense	c.620	p.A207E	1	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	0	no_errors	0	0	0	98	0	0	6	139	95.86	271	0	0.00	18	321	94.41
TET2	0	genome.wustl.edu	37	4	106190854	106190854	+	Missense_Mutation	SNP	T	T	C			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	4	106190854	106190854	T	C	SNP	TET2	ENST00000380013	human	ensembl	74_37	1	known	missense	c.4132	p.C1378R	1	NULL	NULL	0	no_errors	0	0	0	24	0	0	1	20	95.24	73	0	0.00	7	52	88.14
CEP120	0	genome.wustl.edu	37	5	122729053	122729053	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	5	122729053	122729053	G	A	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	missense	c.751	p.R251C	1	NULL	pfam_DUF3668,superfamily_C2_dom	0	no_errors	0	0	0	147	1	0.68	116	104	47.27	221	0	0.00	149	163	52.24
PCDHB11	0	genome.wustl.edu	37	5	140580692	140580692	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	5	140580692	140580692	C	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	1	known	missense	c.1345	p.P449T	0.993	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	0	no_errors	0	0	0	124	0	0	60	75	55.56	15	0	0.00	15	14	48.28
EBF1	0	genome.wustl.edu	37	5	158523987	158523987	+	Nonsense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	5	158523987	158523987	C	A	SNP	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	nonsense	c.286	p.E96*	1	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	0	no_errors	0	0	0	73	0	0	35	22	37.93	141	0	0.00	135	85	38.64
B4GALT7	0	genome.wustl.edu	37	5	177036622	177036622	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	5	177036622	177036622	G	A	SNP	B4GALT7	ENST00000029410	human	ensembl	74_37	1	known	missense	c.910	p.G304R	1	NULL	pfam_Galactosyl_T_C,prints_Galactosyl_T	0	no_errors	rs145082497	G->A	0	64	0	0	24	12	33.33	125	0	0.00	61	76	55.07
TDRG1	0	genome.wustl.edu	37	6	40347300	40347300	+	RNA	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	6	40347300	40347300	G	T	SNP	TDRG1	ENST00000373170	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	76	0	0	6	18	75	217	1	0.46	41	96	69.57
BAG2	0	genome.wustl.edu	37	6	57048769	57048769	+	Nonsense_Mutation	SNP	C	C	G			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	6	57048769	57048769	C	G	SNP	BAG2	ENST00000370693	human	ensembl	74_37	1	known	nonsense	c.417	p.Y139*	1	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	0	no_errors	0	0	0	64	0	0	40	4	9.09	196	1	0.51	113	11	8.80
L3MBTL3	0	genome.wustl.edu	37	6	130425690	130425690	+	Missense_Mutation	SNP	C	C	G			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	6	130425690	130425690	C	G	SNP	L3MBTL3	ENST00000361794	human	ensembl	74_37	1	known	missense	c.1856	p.A619G	0.975	NULL	pfam_Mbt,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	0	no_errors	0	0	0	93	0	0	6	62	91.18	279	0	0.00	17	183	91.50
TOPORS	0	genome.wustl.edu	37	9	32543745	32543745	+	Nonsense_Mutation	SNP	G	G	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	9	32543745	32543745	G	A	SNP	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	nonsense	c.778	p.R260*	0.971	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	0	no_errors	0	0	0	51	0	0	9	8	47.06	226	0	0.00	109	29	20.86
SIRT3	0	genome.wustl.edu	37	11	218806	218806	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	11	218806	218806	G	T	SNP	SIRT3	ENST00000524564	human	ensembl	74_37	-1	novel	missense	c.1013	p.P338Q	0	pirsf_NAD-dep_deAcase_SIR2_class_I	pfam_Sirtuin,pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	0	no_errors	0	0	0	23	0	0	1	4	80	144	0	0.00	15	95	86.36
INCENP	0	genome.wustl.edu	37	11	61897414	61897414	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	11	61897414	61897414	G	A	SNP	INCENP	ENST00000394818	human	ensembl	74_37	1	known	missense	c.415	p.A139T	0.001	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	0	no_errors	0	0	0	55	0	0	23	4	14.81	71	0	0.00	47	3	6.00
SLC22A25	0	genome.wustl.edu	37	11	62931391	62931391	+	Nonsense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	11	62931391	62931391	C	A	SNP	SLC22A25	ENST00000306494	human	ensembl	74_37	-1	known	nonsense	c.1549	p.E517*	1	pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	0	no_errors	0	0	0	66	0	0	4	33	89.19	142	0	0.00	15	76	83.52
MAP6	0	genome.wustl.edu	37	11	75298357	75298357	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	11	75298357	75298357	G	T	SNP	MAP6	ENST00000304771	human	ensembl	74_37	-1	known	missense	c.2189	p.T730K	0.001	NULL	pfam_MAP6/FAM154	0	no_errors	0	0	0	116	0	0	2	37	94.87	242	0	0.00	29	200	87.34
PZP	0	genome.wustl.edu	37	12	9353546	9353546	+	Silent	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	12	9353546	9353546	C	A	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	silent	c.612	p.V204	0.635	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	0	no_errors	0	0	0	48	0	0	0	20	100	118	1	0.84	11	87	88.78
RFXAP	0	genome.wustl.edu	37	13	37393923	37393923	+	Nonsense_Mutation	SNP	C	C	G			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	13	37393923	37393923	C	G	SNP	RFXAP	ENST00000255476	human	ensembl	74_37	1	known	nonsense	c.429	p.Y143*	1	NULL	NULL	0	no_errors	0	0	0	38	0	0	0	26	100	30	0	0.00	1	30	96.77
SHC4	0	genome.wustl.edu	37	15	49135615	49135615	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	15	49135615	49135615	G	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.1474	p.H492N	0.095	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	0	no_errors	0	0	0	53	0	0	3	22	88	191	0	0.00	11	89	89.00
HSD11B2	0	genome.wustl.edu	37	16	67470564	67470564	+	Silent	SNP	G	G	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	16	67470564	67470564	G	A	SNP	HSD11B2	ENST00000326152	human	ensembl	74_37	1	known	silent	c.876	p.L292	0.987	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	0	no_errors	0	0	0	68	0	0	3	21	87.5	52	0	0.00	4	31	88.57
EMC8	0	genome.wustl.edu	37	16	85832706	85832706	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	16	85832706	85832706	C	A	SNP	EMC8	ENST00000253457	human	ensembl	74_37	-1	known	missense	c.196	p.A66S	1	pfam_UPF0172	pfam_UPF0172	0	no_errors	0	0	0	23	0	0	1	4	80	5	0	0.00	6	27	81.82
LOC100996291	0	genome.wustl.edu	37	17	76267476	76267476	+	RNA	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	17	76267476	76267476	C	A	SNP	LOC100996291	ENST00000374945	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	39	0	0	0	8	100	63	0	0.00	8	50	86.21
ZNF492	0	genome.wustl.edu	37	19	22847765	22847765	+	Nonsense_Mutation	SNP	C	C	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	19	22847765	22847765	C	T	SNP	ZNF492	ENST00000456783	human	ensembl	74_37	1	known	nonsense	c.1294	p.Q432*	0	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	45	0	0	60	44	41.9	6	0	0.00	1	2	66.67
AXL	0	genome.wustl.edu	37	19	41743942	41743942	+	Missense_Mutation	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	19	41743942	41743942	C	A	SNP	AXL	ENST00000301178	human	ensembl	74_37	1	known	missense	c.877	p.Q293K	0.772	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	0	no_errors	0	0	0	33	0	0	11	10	47.62	99	0	0.00	98	74	43.02
RIMBP3	0	genome.wustl.edu	37	22	20458238	20458238	+	Missense_Mutation	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	22	20458238	20458238	G	T	SNP	RIMBP3	ENST00000426804	human	ensembl	74_37	-1	known	missense	c.3064	p.H1022N	0.697	superfamily_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	0	no_errors	0	0	0	108	0	0	84	21	20	156	0	0.00	187	36	16.07
GATSL3	0	genome.wustl.edu	37	22	30681675	30681675	+	Silent	SNP	C	C	A			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	22	30681675	30681675	C	A	SNP	GATSL3	ENST00000407689	human	ensembl	74_37	-1	known	silent	c.924	p.V308	1	NULL	NULL	0	no_errors	0	0	0	79	0	0	44	33	42.86	40	0	0.00	28	27	49.09
CBY1	0	genome.wustl.edu	37	22	39069240	39069240	+	Nonstop_Mutation	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	22	39069240	39069240	G	T	SNP	CBY1	ENST00000216029	human	ensembl	74_37	1	known	nonstop	c.380	p.*127L	1	NULL	NULL	0	no_errors	0	0	0	95	0	0	69	36	34.29	193	0	0.00	186	98	34.51
PPWD1	0	genome.wustl.edu	37	5	64868114	64868114	+	Splice_Site	DEL	G	G	-			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	5	64868114	64868114	G	0	DEL	PPWD1	ENST00000261308	human	ensembl	74_37	1	known	splice_site_del	c.969+1	e5+1	1	0	0	0	no_errors	0	0	0	72	0	0	74	62	45.59	344	0	0.00	269	202	42.89
APOA5	0	genome.wustl.edu	37	11	116661131	116661132	+	In_Frame_Ins	INS	-	-	GCC			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	-	-	-	GCC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	11	116661131	116661132	0	GCC	INS	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	in_frame_ins	c.814_813	p.271in_frame_insG	0.005:0.000	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	0	no_errors	0	0	0	37	0	0	1	12	92.31	42	0	0.00	9	24	72.73
FAM86B3P	0	genome.wustl.edu	37	8	8095962	8095962	+	RNA	SNP	G	G	T			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	8	8095962	8095962	G	T	SNP	FAM86B3P	ENST00000590591	human	ensembl	74_37	1	known	rna	NULL	NULL	0.006	0	0	0	no_errors	rs4082991	G->T	0	59	1	1.67	40	6	13.04	0	0	0.00	0	0	0.00
HELZ2	0	genome.wustl.edu	37	20	62202620	62202620	+	RNA	SNP	A	A	C			TCGA-X7-A8M3-01A-11D-A423-09	TCGA-X7-A8M3-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	56f6fe27-c3d9-446f-a87c-901a9fa2970b	24a66c07-b335-4bc0-91ba-29f682fb82db	20	62202620	62202620	A	C	SNP	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.503	0	0	0	no_errors	0	0	0	25	0	0	35	8	18.6	1	0	0.00	0	0	0.00