Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CCDC3	0	genome.wustl.edu	37	10	13043209	13043209	+	Missense_Mutation	SNP	A	A	T			TCGA-X7-A8M4-01A-11D-A423-09	TCGA-X7-A8M4-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fc4ed0e3-d7bb-45ca-aa7a-d24dee360a30	048d7ec6-ca33-4b19-b0e8-69f18ad9a3fa	10	13043209	13043209	A	T	SNP	CCDC3	ENST00000378825	human	ensembl	74_37	-1	known	missense	c.362	p.F121Y	1	NULL	NULL	0	no_errors	0	0	0	121	0	0	76	8	9.52	105	0	0.00	111	7	5.93
SPSB3	0	genome.wustl.edu	37	16	1827257	1827257	+	Silent	SNP	C	C	T			TCGA-X7-A8M4-01A-11D-A423-09	TCGA-X7-A8M4-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fc4ed0e3-d7bb-45ca-aa7a-d24dee360a30	048d7ec6-ca33-4b19-b0e8-69f18ad9a3fa	16	1827257	1827257	C	T	SNP	SPSB3	ENST00000301717	human	ensembl	74_37	-1	known	silent	c.909	p.P303	0.083	smart_SOCS_C,pfscan_SOCS_C	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	0	no_errors	0	0	0	25	0	0	23	3	11.54	57	0	0.00	46	4	8.00
CLIC4	0	genome.wustl.edu	37	1	25071991	25071993	+	RNA	DEL	AGC	AGC	-			TCGA-X7-A8M4-01A-11D-A423-09	TCGA-X7-A8M4-10A-01D-A426-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fc4ed0e3-d7bb-45ca-aa7a-d24dee360a30	048d7ec6-ca33-4b19-b0e8-69f18ad9a3fa	1	25071991	25071993	AGC	0	DEL	CLIC4	ENST00000489758	human	ensembl	74_37	1	known	rna	NULL	NULL	0.000:0.001:0.001	0	0	0	no_errors	0	0	0	31	0	0	26	4	13.33	6	0	0.00	6	0	0.00