Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CT47A6	0	genome.wustl.edu	37	X	120094438	120094438	+	Silent	SNP	G	G	A			TCGA-X7-A8M8-01A-11D-A423-09	TCGA-X7-A8M8-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d82a92d-1100-407d-b801-e290b1adf49a	6aeda5d6-c06b-48cf-9a2c-543e995105fd	X	120094438	120094438	G	A	SNP	CT47A6	ENST00000443600	human	ensembl	74_37	-1	known	silent	c.645	p.A215	0.054	NULL	NULL	0	no_errors	0	0	0	76	1	1.3	91	9	9	0	0	0.00	0	0	0.00
TPRXL	0	genome.wustl.edu	37	3	14105955	14105955	+	Silent	SNP	T	T	C			TCGA-X7-A8M8-01A-11D-A423-09	TCGA-X7-A8M8-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d82a92d-1100-407d-b801-e290b1adf49a	6aeda5d6-c06b-48cf-9a2c-543e995105fd	3	14105955	14105955	T	C	SNP	TPRXL	ENST00000326972	human	ensembl	74_37	1	known	silent	c.279	p.S93	0.996	NULL	NULL	0	no_errors	0	0	0	17	1	5.26	15	5	25	5	0	0.00	6	0	0.00
TUBBP5	0	genome.wustl.edu	37	9	141069114	141069114	+	RNA	SNP	G	G	A			TCGA-X7-A8M8-01A-11D-A423-09	TCGA-X7-A8M8-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d82a92d-1100-407d-b801-e290b1adf49a	6aeda5d6-c06b-48cf-9a2c-543e995105fd	9	141069114	141069114	G	A	SNP	TUBBP5	ENST00000503395	human	ensembl	74_37	1	known	rna	NULL	NULL	0.015	0	0	0	no_errors	rs371804903	G->A	0	39	1	2.44	51	5	8.93	7	0	0.00	10	0	0.00
LTK	0	genome.wustl.edu	37	15	41803413	41803413	+	Missense_Mutation	SNP	C	C	G			TCGA-X7-A8M8-01A-11D-A423-09	TCGA-X7-A8M8-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d82a92d-1100-407d-b801-e290b1adf49a	6aeda5d6-c06b-48cf-9a2c-543e995105fd	15	41803413	41803413	C	G	SNP	LTK	ENST00000263800	human	ensembl	74_37	-1	known	missense	c.946	p.G316R	0.958	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	0	no_errors	0	0	0	22	0	0	14	4	22.22	18	0	0.00	10	0	0.00
ENSG00000215954	0	genome.wustl.edu	37	11	112118603	112118604	+	RNA	DEL	TA	TA	-			TCGA-X7-A8M8-01A-11D-A423-09	TCGA-X7-A8M8-10A-01D-A426-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3d82a92d-1100-407d-b801-e290b1adf49a	6aeda5d6-c06b-48cf-9a2c-543e995105fd	11	112118603	112118604	TA	0	DEL	ENSG00000215954	ENST00000401135	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.045:0.054	0	0	0	no_errors	0	0	0	50	0	0	37	3	7.5	0	0	0.00	0	0	0.00