Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
PPAP2B	0	genome.wustl.edu	37	1	57044568	57044568	+	Missense_Mutation	SNP	A	A	C			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	1	57044568	57044568	A	C	SNP	PPAP2B	ENST00000371250	human	ensembl	74_37	-1	known	missense	c.122	p.L41R	1	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	0	no_errors	0	0	0	59	0	0	49	5	9.26	26	0	0.00	31	4	11.43
XRN1	0	genome.wustl.edu	37	3	142037736	142037736	+	Missense_Mutation	SNP	C	C	T			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	3	142037736	142037736	C	T	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.4411	p.V1471I	0.988	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	0	no_errors	0	0	0	160	0	0	116	14	10.77	208	1	0.48	360	31	7.93
RIMBP2	0	genome.wustl.edu	37	12	130890754	130890754	+	Missense_Mutation	SNP	G	G	A			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	12	130890754	130890754	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.2960	p.T987I	0.801	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	0	no_errors	0	0	0	101	0	0	54	6	10	257	0	0.00	430	32	6.93
CEP250	0	genome.wustl.edu	37	20	34067816	34067816	+	Missense_Mutation	SNP	T	T	C			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	20	34067816	34067816	T	C	SNP	CEP250	ENST00000397527	human	ensembl	74_37	1	known	missense	c.2432	p.L811P	1	NULL	superfamily_Prefoldin	0	no_errors	0	0	0	87	0	0	71	7	8.97	82	0	0.00	122	9	6.87
TTC28	0	genome.wustl.edu	37	22	28501660	28501660	+	Missense_Mutation	SNP	T	T	A			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	22	28501660	28501660	T	A	SNP	TTC28	ENST00000397906	human	ensembl	74_37	-1	novel	missense	c.2914	p.N972Y	1	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	0	no_errors	0	0	0	64	0	0	42	4	8.7	157	1	0.63	262	16	5.73
LARGE	0	genome.wustl.edu	37	22	33700401	33700401	+	Missense_Mutation	SNP	C	C	T			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	22	33700401	33700401	C	T	SNP	LARGE	ENST00000354992	human	ensembl	74_37	-1	known	missense	c.1544	p.R515H	1	NULL	pfam_Glyco_trans_8	0	no_errors	rs368030516	C->T	0	98	0	0	58	5	7.94	75	0	0.00	127	11	7.97
ENSG00000216113	0	genome.wustl.edu	37	8	104863873	104863880	+	RNA	DEL	ACACACAC	ACACACAC	-			TCGA-XH-A853-01A-11D-A423-09	TCGA-XH-A853-10A-01D-A426-09	ACACACAC	ACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	baa4c33d-c706-4a74-b55c-b58396e8cebe	cc062673-2f64-4f9d-9e74-818f2ea5a1d6	8	104863873	104863880	ACACACAC	0	DEL	ENSG00000216113	ENST00000401294	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	0	0	0	no_errors	0	0	0	11	0	0	27	5	15.62	0	0	0.00	0	0	0.00