Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
SDAD1	0	genome.wustl.edu	37	4	76879002	76879002	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	4	76879002	76879002	T	C	SNP	SDAD1	ENST00000356260	human	ensembl	74_37	-1	known	missense	c.1576	p.I526V	1	pfam_SDA1_dom	pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	0	no_errors	0	0	0	69	0	0	56	6	9.68	153	0	0.00	127	12	8.63
FCHO2	0	genome.wustl.edu	37	5	72348254	72348254	+	Missense_Mutation	SNP	A	A	T			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	5	72348254	72348254	A	T	SNP	FCHO2	ENST00000341845	human	ensembl	74_37	1	known	missense	c.1093	p.N365Y	1	NULL	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	0	no_errors	0	0	0	95	0	0	97	10	9.35	403	0	0.00	309	31	9.12
TEAD2	0	genome.wustl.edu	37	19	49859215	49859215	+	Splice_Site	SNP	C	C	T			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	19	49859215	49859215	C	T	SNP	TEAD2	ENST00000539846	human	ensembl	74_37	-1	putative	splice_site	c.1+1	e0+1	1	0	0	0	no_errors	0	0	0	107	0	0	92	7	7.07	35	0	0.00	28	6	17.65
DSCR10	0	genome.wustl.edu	37	21	39580413	39580413	+	RNA	SNP	C	C	A			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	21	39580413	39580413	C	A	SNP	DSCR10	ENST00000432141	human	ensembl	74_37	1	known	rna	NULL	NULL	0.001	0	0	0	no_errors	0	0	0	49	0	0	42	4	8.7	105	0	0.00	99	6	5.71
PKNOX1	0	genome.wustl.edu	37	21	44450115	44450115	+	Silent	SNP	G	G	A			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	21	44450115	44450115	G	A	SNP	PKNOX1	ENST00000291547	human	ensembl	74_37	1	known	silent	c.1215	p.E405	1	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	0	no_errors	0	0	0	38	0	0	32	5	13.51	53	0	0.00	38	3	7.32
PLXNB2	0	genome.wustl.edu	37	22	50719926	50719926	+	Silent	SNP	C	C	T			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	22	50719926	50719926	C	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	silent	c.3525	p.V1175	1	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	0	no_errors	0	0	0	60	0	0	30	6	16.67	47	0	0.00	39	4	9.30
NT5C1B	0	genome.wustl.edu	37	2	18765869	18765871	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	GCT	GCT	GCT	-	GCT	GCT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	2	18765869	18765871	GCT	0	DEL	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	in_frame_del	c.814_812	p.Q271in_frame_del	0.009:0.011:0.004	NULL	pfam_5-nucleotidase	0	no_errors	rs145060005	CGCT->C	0	54	0	0	34	4	10.53	57	0	0.00	44	2	4.35
MT-CO1	0	genome.wustl.edu	37	MT	6497	6497	+	Silent	SNP	T	T	C			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	MT	6497	6497	T	C	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	1	known	silent	c.594	p.S198	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	0	no_errors	0	0	0	15	0	0	2	4	66.67	0	0	0.00	0	0	0.00
LINC00200	0	genome.wustl.edu	37	10	1205771	1205771	+	RNA	SNP	T	T	C			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	10	1205771	1205771	T	C	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	1	known	rna	NULL	NULL	0.02	0	0	0	no_errors	rs55923937	T->C	0	30	1	3.23	14	4	22.22	0	0	0.00	1	0	0.00
ZNF724P	0	genome.wustl.edu	37	19	23405608	23405608	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	19	23405608	23405608	C	T	SNP	ZNF724P	ENST00000418100	human	ensembl	74_37	-1	novel	missense	c.1439	p.C480Y	0.697	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	25	0	0	40	6	13.04	8	0	0.00	3	0	0.00
ONECUT1	0	genome.wustl.edu	37	15	53081865	53081867	+	In_Frame_Del	DEL	GGT	GGT	-			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	GGT	GGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	15	53081865	53081867	GGT	0	DEL	ONECUT1	ENST00000305901	human	ensembl	74_37	-1	known	in_frame_del	c.217_215	p.H72in_frame_del	1.000:1.000:1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	0	no_errors	0	0	0	43	1	2.27	32	5	13.51	11	0	0.00	5	0	0.00
KRTAP10-2	0	genome.wustl.edu	37	21	45971380	45971381	+	RNA	INS	-	-	GTGAGTGAGTGT			TCGA-XM-A8R9-01A-31D-A423-09	TCGA-XM-A8R9-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	af0ac1c2-2335-4517-96b0-96f4c804eab6	4d060e5b-e384-403d-a14a-1fe57d89d74e	21	45971380	45971381	0	GTGAGTGAGTGT	INS	KRTAP10-2	ENST00000498210	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018:0.138	0	0	0	no_errors	rs6147532	A->AAG,AGTGAGTGAGTGAGTGAGTGAGTGT,AGTGAGTGAGTGT,AGTGAGTGT	0.1847,.,0.0007987,0.7919,0.02256	24	1	4	34	10	22.73	5	0	0.00	6	0	0.00