Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val MT-RNR2 0 genome.wustl.edu 37 MT 2866 2866 + RNA SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 2866 2866 A G SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 145 0 0 144 41 22.16 10 0 0.00 0 2 100.00 MT-RNR2 0 genome.wustl.edu 37 MT 2978 2978 + RNA SNP T T C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 2978 2978 T C SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 65 0 0 70 13 15.66 8 0 0.00 1 2 66.67 CXorf22 0 genome.wustl.edu 37 X 35959479 35959479 + Missense_Mutation SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 X 35959479 35959479 A G SNP CXorf22 ENST00000297866 human ensembl 74_37 1 known missense c.481 p.K161E 0.812 superfamily_PapD-like superfamily_PapD-like 0 no_errors 0 0 0 83 0 0 96 8 7.69 118 0 0.00 153 20 11.43 BCOR 0 genome.wustl.edu 37 X 39933500 39933500 + Missense_Mutation SNP A A T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 X 39933500 39933500 A T SNP BCOR ENST00000378444 human ensembl 74_37 -1 known missense c.1099 p.S367T 0.993 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom 0 no_errors 0 0 0 24 0 0 38 5 11.63 98 0 0.00 130 18 12.08 EPS15 0 genome.wustl.edu 37 1 51929355 51929355 + Missense_Mutation SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 1 51929355 51929355 A G SNP EPS15 ENST00000371733 human ensembl 74_37 -1 known missense c.491 p.I164T 1 smart_EPS15_homology,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif 0 no_errors 0 0 0 187 0 0 138 12 8 217 0 0.00 220 15 6.38 LMX1A 0 genome.wustl.edu 37 1 165218733 165218733 + Silent SNP G G A TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 1 165218733 165218733 G A SNP LMX1A ENST00000294816 human ensembl 74_37 -1 known silent c.408 p.V136 0.988 pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom 0 no_errors 0 0 0 43 0 0 38 4 9.52 54 0 0.00 86 19 18.10 DSTYK 0 genome.wustl.edu 37 1 205180465 205180465 + Missense_Mutation SNP G G C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 1 205180465 205180465 G C SNP DSTYK ENST00000367162 human ensembl 74_37 -1 known missense c.199 p.L67V 0.937 NULL pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom 0 no_errors 0 0 0 83 0 0 95 11 10.38 75 0 0.00 111 7 5.93 FSIP2 0 genome.wustl.edu 37 2 186665769 186665769 + Silent SNP G G A TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 2 186665769 186665769 G A SNP FSIP2 ENST00000343098 human ensembl 74_37 1 known silent c.12003 p.L4001 0 NULL NULL 0 no_errors 0 0 0 48 0 0 34 5 12.82 181 0 0.00 192 22 10.28 FAM208A 0 genome.wustl.edu 37 3 56657536 56657536 + Silent SNP T T C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 3 56657536 56657536 T C SNP FAM208A ENST00000355628 human ensembl 74_37 -1 known silent c.4359 p.E1453 1 NULL pfam_DUF3715 0 no_errors 0 0 0 31 0 0 37 6 13.64 218 0 0.00 234 24 9.30 CMSS1 0 genome.wustl.edu 37 3 99886630 99886630 + Missense_Mutation SNP C C T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 3 99886630 99886630 C T SNP CMSS1 ENST00000421999 human ensembl 74_37 1 known missense c.464 p.S155L 0.996 pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase 0 no_errors 0 0 0 70 0 0 60 10 14.29 173 0 0.00 157 12 7.06 TDO2 0 genome.wustl.edu 37 4 156830136 156830136 + Missense_Mutation SNP C C T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 4 156830136 156830136 C T SNP TDO2 ENST00000536354 human ensembl 74_37 1 known missense c.401 p.T134M 1 pfam_Trp_2_3_dOase pfam_Trp_2_3_dOase 0 no_errors 0 0 0 79 0 0 62 6 8.82 135 0 0.00 112 8 6.61 ACSL1 0 genome.wustl.edu 37 4 185678349 185678349 + Missense_Mutation SNP G G A TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 4 185678349 185678349 G A SNP ACSL1 ENST00000281455 human ensembl 74_37 -1 known missense c.2027 p.A676V 0.998 NULL pfam_AMP-dep_Synth/Lig 0 no_errors 0 0 0 52 0 0 38 5 11.36 161 0 0.00 160 7 4.19 KCNQ5 0 genome.wustl.edu 37 6 73879514 73879514 + Missense_Mutation SNP G G A TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 6 73879514 73879514 G A SNP KCNQ5 ENST00000402622 human ensembl 74_37 1 known missense c.1544 p.C515Y 1 pfam_K_chnl_volt-dep_KCNQ_C pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl 0 no_errors 0 0 0 95 0 0 115 14 10.85 234 0 0.00 196 23 10.50 LEP 0 genome.wustl.edu 37 7 127892159 127892159 + Missense_Mutation SNP G G T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 7 127892159 127892159 G T SNP LEP ENST00000308868 human ensembl 74_37 1 known missense c.88 p.D30Y 1 pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin 0 no_errors 0 0 0 65 0 0 62 5 7.46 184 0 0.00 287 13 4.32 NCOA2 0 genome.wustl.edu 37 8 71068207 71068207 + Missense_Mutation SNP T T G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 T T T G T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 8 71068207 71068207 T G SNP NCOA2 ENST00000452400 human ensembl 74_37 -1 known missense c.2393 p.Q798P 1 pirsf_Nuclear_rcpt_coactivator pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom 0 no_errors 0 0 0 35 0 0 52 12 18.75 225 0 0.00 238 50 17.30 GPRIN2 0 genome.wustl.edu 37 10 46999615 46999615 + Silent SNP C C G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 10 46999615 46999615 C G SNP GPRIN2 ENST00000374314 human ensembl 74_37 1 known silent c.735 p.G245 0.023 NULL NULL 0 no_errors 0 0 0 36 0 0 28 5 15.15 55 0 0.00 63 3 4.55 DCLRE1A 0 genome.wustl.edu 37 10 115609247 115609247 + Silent SNP A A C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 10 115609247 115609247 A C SNP DCLRE1A ENST00000361384 human ensembl 74_37 -1 known silent c.1617 p.P539 0.004 NULL pfam_DRMBL 0 no_errors 0 0 0 71 0 0 49 7 12.5 202 0 0.00 252 36 12.50 RAPGEF3 0 genome.wustl.edu 37 12 48144924 48144924 + Missense_Mutation SNP C C T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 12 48144924 48144924 C T SNP RAPGEF3 ENST00000389212 human ensembl 74_37 -1 known missense c.578 p.R193K 0.008 NULL pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_DEP_dom,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin 0 no_errors 0 0 0 42 0 0 48 4 7.69 48 0 0.00 58 9 13.43 RAB27A 0 genome.wustl.edu 37 15 55522664 55522664 + Silent SNP C C A TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 15 55522664 55522664 C A SNP RAB27A ENST00000336787 human ensembl 74_37 -1 known silent c.174 p.P58 0.038 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors 0 0 0 58 0 0 34 8 19.05 110 0 0.00 122 20 14.08 TBC1D2B 0 genome.wustl.edu 37 15 78316874 78316874 + Missense_Mutation SNP A A C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 15 78316874 78316874 A C SNP TBC1D2B ENST00000300584 human ensembl 74_37 -1 known missense c.1094 p.V365G 0.99 NULL pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Prefoldin,smart_Pleckstrin_homology,smart_Rab-GTPase-TBC_dom,pfscan_Pleckstrin_homology,pfscan_Rab-GTPase-TBC_dom 0 no_errors 0 0 0 18 0 0 20 4 16.67 98 0 0.00 111 6 5.13 RNF213 0 genome.wustl.edu 37 17 78320135 78320135 + Missense_Mutation SNP C C G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 17 78320135 78320135 C G SNP RNF213 ENST00000582970 human ensembl 74_37 1 known missense c.8000 p.S2667C 0 superfamily_P-loop_NTPase superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING 0 no_errors 0 0 0 23 0 0 32 4 11.11 48 0 0.00 52 6 10.34 TUBB6 0 genome.wustl.edu 37 18 12308715 12308715 + Silent SNP C C T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 18 12308715 12308715 C T SNP TUBB6 ENST00000317702 human ensembl 74_37 1 known silent c.87 p.G29 0.995 pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Alpha_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin 0 no_errors rs376972319 C->T 0 102 0 0 76 10 11.63 74 0 0.00 67 4 5.63 NCAN 0 genome.wustl.edu 37 19 19335003 19335003 + Missense_Mutation SNP C C T TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 19 19335003 19335003 C T SNP NCAN ENST00000252575 human ensembl 74_37 1 known missense c.649 p.R217W 0.87 pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII 0 no_errors 0 0 0 38 0 0 43 7 13.73 100 0 0.00 114 13 10.16 FASTKD5 0 genome.wustl.edu 37 20 3128199 3128199 + Silent SNP A A C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 20 3128199 3128199 A C SNP FASTKD5 ENST00000380266 human ensembl 74_37 -1 known silent c.1518 p.T506 0.076 NULL pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP 0 no_errors 0 0 0 20 0 0 38 5 11.63 262 0 0.00 311 35 10.09 LDHC 0 genome.wustl.edu 37 11 18451288 18451288 + Frame_Shift_Del DEL C C - TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 C C C - C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 11 18451288 18451288 C 0 DEL LDHC ENST00000280704 human ensembl 74_37 1 known frame_shift_del c.249 p.Y83fs 0.057 pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH 0 no_errors 0 0 0 87 0 0 63 7 10 213 0 0.00 209 23 9.91 MT-RNR2 0 genome.wustl.edu 37 MT 2487 2487 + RNA SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 2487 2487 A G SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 388 1 0.26 459 35 7.07 10 0 0.00 2 0 0.00 MT-RNR2 0 genome.wustl.edu 37 MT 2648 2648 + RNA SNP T T C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 2648 2648 T C SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 680 1 0.15 759 143 15.82 5 0 0.00 2 0 0.00 MT-RNR2 0 genome.wustl.edu 37 MT 2833 2833 + RNA SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 2833 2833 A G SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors rs3928312 A->G 0 179 0 0 171 65 27.54 9 0 0.00 1 0 0.00 MT-RNR2 0 genome.wustl.edu 37 MT 3209 3209 + RNA SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 3209 3209 A G SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 15 0 0 14 7 33.33 5 0 0.00 0 0 0.00 MT-CO2 0 genome.wustl.edu 37 MT 8157 8157 + Missense_Mutation SNP T T C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 8157 8157 T C SNP MT-CO2 ENST00000361739 human ensembl 74_37 1 known missense c.572 p.V191A NULL pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2 pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2 0 no_errors 0 0 0 58 0 0 48 7 12.28 3 0 0.00 2 0 0.00 MT-ND6 0 genome.wustl.edu 37 MT 14587 14587 + Silent SNP A A C TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 14587 14587 A C SNP MT-ND6 ENST00000361681 human ensembl 74_37 -1 known silent c.87 p.G29 NULL pfam_NADH_UbQ/plastoQ_OxRdtase_su6 pfam_NADH_UbQ/plastoQ_OxRdtase_su6 0 no_errors 0 0 0 322 0 0 339 104 23.48 2 0 0.00 0 0 0.00 MT-ND6 0 genome.wustl.edu 37 MT 14641 14641 + Silent SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 MT 14641 14641 A G SNP MT-ND6 ENST00000361681 human ensembl 74_37 -1 known silent c.33 p.G11 NULL NULL pfam_NADH_UbQ/plastoQ_OxRdtase_su6 0 no_errors 0 0 0 380 0 0 389 182 31.27 3 0 0.00 1 0 0.00 CCDC180 0 genome.wustl.edu 37 9 100092960 100092960 + Missense_Mutation SNP A A G TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 9 100092960 100092960 A G SNP CCDC180 ENST00000375202 human ensembl 74_37 1 known missense c.2317 p.K773E 0 NULL NULL 0 no_errors 0 0 0 34 0 0 49 4 7.55 18 0 0.00 9 0 0.00 IGDCC4 0 genome.wustl.edu 37 15 65678319 65678319 + Frame_Shift_Del DEL G G - TCGA-XM-A8RC-01A-11D-A423-09 TCGA-XM-A8RC-10A-01D-A426-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 63079442-ed32-400c-a2e9-a7004ac9c0d8 21abfc15-ddeb-49e4-b105-fc6d84224577 15 65678319 65678319 G 0 DEL IGDCC4 ENST00000352385 human ensembl 74_37 -1 novel frame_shift_del c.3030 p.S1011fs 0.001 NULL pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom 0 no_errors 0 0 0 26 0 0 22 5 18.52 3 0 0.00 9 0 0.00