Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MARK1	0	genome.wustl.edu	37	1	220808856	220808856	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	1	220808856	220808856	C	T	SNP	MARK1	ENST00000366917	human	ensembl	74_37	1	known	missense	c.1261	p.R421C	1	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	35	0	0	20	3	13.04	147	0	0.00	127	32	20.13
PIK3R1	0	genome.wustl.edu	37	5	67588086	67588086	+	Splice_Site	SNP	G	G	A			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	5	67588086	67588086	G	A	SNP	PIK3R1	ENST00000396611	human	ensembl	74_37	1	known	splice_site	c.917-1	e7-1	1	0	0	0	no_errors	0	0	0	118	0	0	75	6	7.41	287	0	0.00	244	36	12.86
ZNF658	0	genome.wustl.edu	37	9	40774255	40774255	+	Missense_Mutation	SNP	A	A	C			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	9	40774255	40774255	A	C	SNP	ZNF658	ENST00000377626	human	ensembl	74_37	-1	known	missense	c.1020	p.H340Q	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	109	1	0.91	82	9	9.89	106	2	1.85	90	5	5.26
PRKRIR	0	genome.wustl.edu	37	11	76062107	76062107	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	11	76062107	76062107	C	T	SNP	PRKRIR	ENST00000260045	human	ensembl	74_37	-1	known	missense	c.2087	p.R696Q	0.979	pfam_HATC_dom_C,superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	0	no_errors	rs34345847	C->T	0	116	0	0	88	11	11.11	115	2	1.71	75	6	7.41
MVP	0	genome.wustl.edu	37	16	29848216	29848216	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	16	29848216	29848216	C	T	SNP	MVP	ENST00000452209	human	ensembl	74_37	1	known	missense	c.289	p.R97C	1	NULL	NULL	0	no_errors	0	0	0	55	1	1.79	70	6	7.79	104	1	0.95	103	9	8.04
KRTAP4-3	0	genome.wustl.edu	37	17	39324104	39324104	+	Silent	SNP	A	A	G			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	17	39324104	39324104	A	G	SNP	KRTAP4-3	ENST00000391356	human	ensembl	74_37	-1	known	silent	c.321	p.S107	0.009	NULL	pfam_Keratin-assoc	0	no_errors	rs368619075	A->G	0	87	1	1.14	91	7	7.14	15	0	0.00	24	2	7.69
MT-RNR2	0	genome.wustl.edu	37	MT	2778	2778	+	RNA	SNP	T	T	C			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	MT	2778	2778	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	552	1	0.18	122	75	38.07	2	0	0.00	0	0	0.00
SPDYE2B	0	genome.wustl.edu	37	7	102294058	102294058	+	Silent	SNP	G	G	A			TCGA-XM-A8RD-01A-11D-A423-09	TCGA-XM-A8RD-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6dcf015f-75c3-4cb1-a7d2-4c3834265d30	63c446d7-2dd1-4181-bfb9-005d3d96416b	7	102294058	102294058	G	A	SNP	SPDYE2B	ENST00000436228	human	ensembl	74_37	1	known	silent	c.321	p.K107	0.067	NULL	pfam_Cell_cycle_regulatory_Spy1	0	no_errors	0	0	0	25	0	0	23	5	17.86	0	0	0.00	0	0	0.00