Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-ND4L	0	genome.wustl.edu	37	MT	10644	10644	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	MT	10644	10644	G	A	SNP	MT-ND4L	ENST00000361335	human	ensembl	74_37	1	known	missense	c.175	p.V59M	NULL	pfam_NADH_UbQ_OxRdtase_chain4L/K	pfam_NADH_UbQ_OxRdtase_chain4L/K	0	no_errors	0	0	0	22	0	0	0	9	100	3	0	0.00	0	4	100.00
SRPX2	0	genome.wustl.edu	37	X	99925838	99925838	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	X	99925838	99925838	A	C	SNP	SRPX2	ENST00000373004	human	ensembl	74_37	1	known	missense	c.1252	p.M418L	1	superfamily_Thioredoxin-like_fold	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	0	no_errors	0	0	0	29	0	0	30	14	31.82	137	0	0.00	81	31	27.68
PIN1P1	0	genome.wustl.edu	37	1	70385045	70385045	+	RNA	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	70385045	70385045	G	A	SNP	PIN1P1	ENST00000412108	human	ensembl	74_37	1	known	rna	NULL	NULL	0.995	0	0	0	no_errors	0	0	0	39	0	0	42	7	14.29	91	0	0.00	53	7	11.67
DNM3	0	genome.wustl.edu	37	1	171956945	171956945	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	171956945	171956945	G	A	SNP	DNM3	ENST00000358155	human	ensembl	74_37	1	known	missense	c.385	p.V129M	1	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	0	no_errors	rs371617456	G->A	0	22	0	0	66	12	15.38	297	0	0.00	341	41	10.70
PPP1R12B	0	genome.wustl.edu	37	1	202464470	202464470	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	202464470	202464470	C	T	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	1	known	missense	c.2195	p.T732M	0.331	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	rs143792888	C->T	0.9998,0.0001997	174	0	0	344	41	10.65	195	1	0.51	220	17	7.17
OR2T2	0	genome.wustl.edu	37	1	248616514	248616514	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	248616514	248616514	G	T	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	1	known	missense	c.416	p.R139L	0	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	53	0	0	94	10	9.62	125	2	1.57	117	15	11.36
SLC9A2	0	genome.wustl.edu	37	2	103324903	103324903	+	Silent	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	2	103324903	103324903	G	A	SNP	SLC9A2	ENST00000233969	human	ensembl	74_37	1	known	silent	c.2394	p.S798	0.451	prints_Na/H_exchanger_2	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	0	no_errors	0	0	0	29	0	0	38	3	7.32	233	0	0.00	131	29	18.12
COL5A2	0	genome.wustl.edu	37	2	189909916	189909916	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	2	189909916	189909916	G	A	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.3352	p.R1118C	1	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	0	no_errors	0	0	0	85	0	0	144	26	15.12	151	1	0.66	98	9	8.41
MAP4	0	genome.wustl.edu	37	3	47933312	47933312	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	3	47933312	47933312	A	C	SNP	MAP4	ENST00000420772	human	ensembl	74_37	-1	known	missense	c.670	p.S224A	0	NULL	pfam_MAP_tubulin-bd_rpt	0	no_errors	0	0	0	50	0	0	54	9	14.29	225	0	0.00	105	30	22.22
BMP5	0	genome.wustl.edu	37	6	55638913	55638913	+	Nonsense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	6	55638913	55638913	G	A	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	nonsense	c.961	p.R321*	1	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	0	no_errors	rs550837639	G->A	0.9998,0.0001997	86	0	0	79	23	22.55	328	1	0.30	155	44	22.11
ZAN	0	genome.wustl.edu	37	7	100395209	100395209	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	7	100395209	100395209	C	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	1	known	nonsense	c.8101	p.Q2701*	0	NULL	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	0	no_errors	0	0	0	42	0	0	47	9	16.07	165	0	0.00	103	10	8.85
PSMC2	0	genome.wustl.edu	37	7	103008481	103008481	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	7	103008481	103008481	C	T	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	1	known	missense	c.1282	p.R428C	0.994	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	0	no_errors	0	0	0	26	0	0	34	13	27.66	167	0	0.00	155	18	10.40
KCP	0	genome.wustl.edu	37	7	128526557	128526557	+	RNA	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	7	128526557	128526557	G	A	SNP	KCP	ENST00000297801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	0	0	0	no_errors	0	0	0	11	0	0	17	3	15	44	0	0.00	33	3	8.33
TTC40	0	genome.wustl.edu	37	10	134671174	134671174	+	Silent	SNP	A	A	G			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	10	134671174	134671174	A	G	SNP	TTC40	ENST00000368586	human	ensembl	74_37	-1	putative	silent	c.5494	p.L1832	0.028	NULL	NULL	0	no_errors	0	0	0	33	1	2.94	33	4	10.81	138	1	0.72	64	3	4.48
EED	0	genome.wustl.edu	37	11	85979560	85979560	+	Missense_Mutation	SNP	A	A	G			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	11	85979560	85979560	A	G	SNP	EED	ENST00000263360	human	ensembl	74_37	1	known	missense	c.923	p.Y308C	1	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	0	no_errors	0	0	0	45	0	0	35	11	23.91	158	0	0.00	87	20	18.69
MCRS1	0	genome.wustl.edu	37	12	49953267	49953267	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	12	49953267	49953267	C	T	SNP	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	missense	c.1094	p.R365H	1	superfamily_SMAD_FHA_domain	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	0	no_errors	0	0	0	24	0	0	14	3	17.65	57	0	0.00	42	2	4.55
BAZ2A	0	genome.wustl.edu	37	12	57005324	57005324	+	RNA	SNP	A	A	C			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	12	57005324	57005324	A	C	SNP	BAZ2A	ENST00000549327	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.096	0	0	0	no_errors	0	0	0	35	0	0	46	14	23.33	312	2	0.63	165	30	15.23
PHLDA1	0	genome.wustl.edu	37	12	76424507	76424507	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	12	76424507	76424507	G	A	SNP	PHLDA1	ENST00000266671	human	ensembl	74_37	-1	known	missense	c.1015	p.P339S	0.313	NULL	smart_Pleckstrin_homology	0	no_errors	0	0	0	31	0	0	33	12	26.67	42	0	0.00	38	8	17.02
PPFIA2	0	genome.wustl.edu	37	12	81799641	81799641	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	12	81799641	81799641	T	G	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.687	p.K229N	1	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	0	no_errors	0	0	0	49	1	2	54	12	18.18	258	0	0.00	151	30	16.57
NAA16	0	genome.wustl.edu	37	13	41932577	41932577	+	Nonsense_Mutation	SNP	G	G	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	13	41932577	41932577	G	T	SNP	NAA16	ENST00000379406	human	ensembl	74_37	1	known	nonsense	c.1225	p.E409*	1	smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	0	no_errors	0	0	0	50	0	0	62	14	18.42	240	1	0.41	147	40	21.39
TGM5	0	genome.wustl.edu	37	15	43525533	43525533	+	Silent	SNP	G	G	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	15	43525533	43525533	G	T	SNP	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	silent	c.2019	p.V673	1	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	0	no_errors	0	0	0	36	0	0	52	10	16.13	295	1	0.34	179	36	16.74
SIN3A	0	genome.wustl.edu	37	15	75692406	75692406	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	15	75692406	75692406	T	C	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.1829	p.Y610C	1	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	0	no_errors	0	0	0	52	0	0	64	6	8.57	293	0	0.00	178	28	13.59
ADAMTSL3	0	genome.wustl.edu	37	15	84639319	84639319	+	Silent	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	15	84639319	84639319	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	1	known	silent	c.2574	p.L858	0.001	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	0	no_errors	0	0	0	36	0	0	41	12	22.64	159	0	0.00	81	21	20.59
GABARAP	0	genome.wustl.edu	37	17	7145585	7145585	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	17	7145585	7145585	C	T	SNP	GABARAP	ENST00000302386	human	ensembl	74_37	-1	known	missense	c.65	p.R22Q	1	pfam_Atg8_fam	pfam_Atg8_fam,pfam_Atg12	0	no_errors	0	0	0	91	0	0	79	25	24.04	140	0	0.00	78	12	13.33
GAS2L2	0	genome.wustl.edu	37	17	34071991	34071991	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	17	34071991	34071991	C	T	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	missense	c.2525	p.G842E	0	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	0	no_errors	0	0	0	56	0	0	46	6	11.54	82	0	0.00	41	8	16.33
APCDD1	0	genome.wustl.edu	37	18	10471541	10471541	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	18	10471541	10471541	C	T	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	1	known	missense	c.257	p.S86L	1	NULL	NULL	0	no_errors	0	0	0	67	0	0	76	15	16.48	333	1	0.30	167	41	19.71
MIR205HG	0	genome.wustl.edu	37	1	209605572	209605573	+	RNA	INS	-	-	GG			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	-	-	-	GG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	209605572	209605573	0	GG	INS	MIR205HG	ENST00000366437	human	ensembl	74_37	1	known	rna	NULL	NULL	1.000:1.000	0	0	0	no_errors	0	0	0	43	0	0	76	17	18.28	120	0	0.00	183	11	5.67
ASXL1	0	genome.wustl.edu	37	20	31022442	31022442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	20	31022442	31022442	G	0	DEL	ASXL1	ENST00000375687	human	ensembl	74_37	1	known	frame_shift_del	c.1927	p.G645fs	1	NULL	NULL	0	no_errors	0	0	0	69	0	0	92	11	10.68	31	0	0.00	23	3	11.54
MT-RNR2	0	genome.wustl.edu	37	MT	2833	2833	+	RNA	SNP	A	A	G			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	MT	2833	2833	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	rs3928312	A->G	0	112	0	0	41	130	76.02	3	0	0.00	0	0	0.00
MT-CO2	0	genome.wustl.edu	37	MT	7852	7852	+	Silent	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	MT	7852	7852	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	1	known	silent	c.267	p.E89	NULL	superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	0	no_errors	rs199751156	G->A	0	500	0	0	671	55	7.57	0	0	0.00	3	0	0.00
DMAP1	0	genome.wustl.edu	37	1	44685818	44685818	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	44685818	44685818	G	A	SNP	DMAP1	ENST00000315913	human	ensembl	74_37	1	known	missense	c.1181	p.R394H	1	pfam_DMAP1	pfam_DMAP1,superfamily_Homeodomain-like	0	no_errors	0	0	0	29	0	0	38	3	7.32	22	0	0.00	10	0	0.00
KCNN3	0	genome.wustl.edu	37	1	154842253	154842253	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	1	154842253	154842253	G	A	SNP	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	missense	c.188	p.P63L	0.985	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	0	no_errors	0	0	0	29	0	0	54	6	9.23	6	0	0.00	8	0	0.00
PSIP1	0	genome.wustl.edu	37	9	15510275	15510275	+	RNA	SNP	G	G	C			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	9	15510275	15510275	G	C	SNP	PSIP1	ENST00000463712	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	0	0	0	no_errors	0	0	0	26	0	0	33	7	17.5	6	0	0.00	7	0	0.00
CABLES2	0	genome.wustl.edu	37	20	60966373	60966373	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	20	60966373	60966373	C	T	SNP	CABLES2	ENST00000279101	human	ensembl	74_37	-1	known	missense	c.1228	p.A410T	1	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	0	no_errors	0	0	0	45	0	0	52	4	7.14	41	0	0.00	10	0	0.00
SNTG2	0	genome.wustl.edu	37	2	946704	946704	+	Frame_Shift_Del	DEL	C	C	-			TCGA-XU-A930-01A-11D-A423-09	TCGA-XU-A930-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7d43a967-5fed-462b-a2fc-2b1df4a3c112	67eb82f3-eca1-46f5-99a6-8e80cd397b5a	2	946704	946704	C	0	DEL	SNTG2	ENST00000308624	human	ensembl	74_37	1	known	frame_shift_del	c.22	p.P9fs	0.372	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	0	no_errors	0	0	0	11	0	0	4	2	33.33	10	0	0.00	4	0	0.00