Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-RNR2	0	genome.wustl.edu	37	MT	2912	2912	+	RNA	SNP	C	C	T			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	MT	2912	2912	C	T	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	240	0	0	60	71	54.2	5	0	0.00	1	2	66.67
PPT1	0	genome.wustl.edu	37	1	40558098	40558098	+	Missense_Mutation	SNP	G	G	T			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	1	40558098	40558098	G	T	SNP	PPT1	ENST00000433473	human	ensembl	74_37	-1	known	missense	c.206	p.S69Y	0.998	pfam_Palm_thioest,prints_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	0	no_errors	0	0	0	59	0	0	55	9	14.06	671	0	0.00	222	19	7.82
AGAP8	0	genome.wustl.edu	37	10	51225554	51225554	+	Silent	SNP	A	A	G			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	10	51225554	51225554	A	G	SNP	AGAP8	ENST00000425119	human	ensembl	74_37	-1	known	silent	c.1428	p.C476	1	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	0	no_errors	0	0	0	123	0	0	129	14	9.79	99	0	0.00	34	2	5.56
MUC16	0	genome.wustl.edu	37	19	9077478	9077478	+	Missense_Mutation	SNP	C	C	T			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	19	9077478	9077478	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.9968	p.S3323N	0	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	0	no_errors	0	0	0	35	0	0	37	3	7.5	381	0	0.00	120	11	8.40
PRX	0	genome.wustl.edu	37	19	40901939	40901939	+	Missense_Mutation	SNP	C	C	T			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	19	40901939	40901939	C	T	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.2320	p.V774M	0.035	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	0	no_errors	0	0	0	14	0	0	14	5	26.32	197	0	0.00	61	4	6.15
SMPD4P1	0	genome.wustl.edu	37	22	20977047	20977047	+	RNA	SNP	G	G	A			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	22	20977047	20977047	G	A	SNP	SMPD4P1	ENST00000443839	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.704	0	0	0	no_errors	0	0	0	43	0	0	35	3	7.89	447	0	0.00	141	6	4.05
FCAR	0	genome.wustl.edu	37	19	55386792	55386793	+	Frame_Shift_Ins	INS	-	-	C			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	19	55386792	55386793	0	C	INS	FCAR	ENST00000355524	human	ensembl	74_37	1	known	frame_shift_ins	c.41_42	p.L15fs	1.000:1.000	NULL	smart_Ig_sub	0	no_errors	0	0	0	26	0	0	50	7	12.28	556	0	0.00	228	16	6.56
MUC4	0	genome.wustl.edu	37	3	195506314	195506314	+	Missense_Mutation	SNP	G	G	C			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	3	195506314	195506314	G	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.12137	p.T4046S	0	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	0	no_errors	0	0	0	23	1	4.17	27	4	12.9	29	0	0.00	3	0	0.00
HYDIN	0	genome.wustl.edu	37	16	70977762	70977762	+	Missense_Mutation	SNP	C	C	T			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	16	70977762	70977762	C	T	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.6622	p.V2208M	1	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_PapD-like	0	no_errors	0	0	0	19	0	0	9	4	30.77	18	0	0.00	1	0	0.00
DGKZ	0	genome.wustl.edu	37	11	46400561	46400562	+	Frame_Shift_Ins	INS	-	-	G			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	11	46400561	46400562	0	G	INS	DGKZ	ENST00000454345	human	ensembl	74_37	1	known	frame_shift_ins	c.3003_3004	p.D1003fs	0.572:1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	0	0	0	8	0	0	4	2	33.33	30	0	0.00	9	0	0.00
ENSG00000262477	0	genome.wustl.edu	37	18	29992351	29992351	+	RNA	DEL	A	A	-			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	18	29992351	29992351	A	0	DEL	ENSG00000262477	ENST00000573479	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.999	0	0	0	no_errors	0	0	0	20	0	0	20	3	13.04	0	0	0.00	0	0	0.00
GATAD2A	0	genome.wustl.edu	37	19	19612169	19612170	+	Frame_Shift_Ins	INS	-	-	C			TCGA-YT-A95H-01A-11D-A428-09	TCGA-YT-A95H-10A-01D-A42B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ae12b51c-15e5-4aba-b4cd-681fdcbaa13e	5927d5ea-9271-45b9-a21d-ad042fd911d1	19	19612169	19612170	0	C	INS	GATAD2A	ENST00000358713	human	ensembl	74_37	1	known	frame_shift_ins	c.1444_1445	p.A484fs	0.612:0.646	NULL	pfam_Znf_GATA,pfscan_Znf_GATA	0	no_errors	0	0	0	12	0	0	12	2	14.29	22	0	0.00	6	0	0.00