Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
LRRC42	0	genome.wustl.edu	37	1	54432012	54432012	+	Missense_Mutation	SNP	C	C	A			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	1	54432012	54432012	C	A	SNP	LRRC42	ENST00000319223	human	ensembl	74_37	1	known	missense	c.971	p.P324Q	0.016	NULL	NULL	0	no_errors	0	0	0	81	0	0	42	6	12.24	127	0	0.00	85	10	10.53
LINC00487	0	genome.wustl.edu	37	2	6876837	6876837	+	RNA	SNP	G	G	T			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	2	6876837	6876837	G	T	SNP	LINC00487	ENST00000382045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	63	0	0	42	4	8.7	186	0	0.00	133	13	8.90
PLK4	0	genome.wustl.edu	37	4	128811126	128811126	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	4	128811126	128811126	C	T	SNP	PLK4	ENST00000270861	human	ensembl	74_37	1	known	missense	c.1565	p.T522I	0	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	61	0	0	46	5	9.8	231	0	0.00	163	21	11.41
ZNF727	0	genome.wustl.edu	37	7	63538269	63538269	+	Missense_Mutation	SNP	A	A	T			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	7	63538269	63538269	A	T	SNP	ZNF727	ENST00000550760	human	ensembl	74_37	1	known	missense	c.842	p.E281V	1	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	81	0	0	46	6	11.54	122	0	0.00	118	8	6.35
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	468	0	0	287	30	9.46	133	0	0.00	98	5	4.85
NRG1	0	genome.wustl.edu	37	8	32607058	32607058	+	RNA	SNP	G	G	A			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	8	32607058	32607058	G	A	SNP	NRG1	ENST00000523681	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	49	0	0	28	6	17.65	239	1	0.41	154	28	15.14
USP2	0	genome.wustl.edu	37	11	119230314	119230314	+	Nonsense_Mutation	SNP	G	G	T			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	11	119230314	119230314	G	T	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	nonsense	c.882	p.Y294*	0.999	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	0	no_errors	0	0	0	26	0	0	28	4	12.5	152	0	0.00	117	14	10.69
CD163L1	0	genome.wustl.edu	37	12	7510020	7510020	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	12	7510020	7510020	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.4342	p.A1448T	0.459	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	0	no_errors	0	0	0	80	0	0	44	5	10.2	223	0	0.00	160	15	8.52
KDM2A	0	genome.wustl.edu	37	11	67018081	67018081	+	Silent	SNP	G	G	A			TCGA-ZB-A963-01A-11D-A428-09	TCGA-ZB-A963-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8597e4e5-c134-4dce-9b91-62ef0c573ebf	06601478-0cf9-430a-b343-8051ae4396d1	11	67018081	67018081	G	A	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	1	known	silent	c.2580	p.E860	0.994	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	0	no_errors	0	0	0	16	0	0	11	4	26.67	8	0	0.00	5	0	0.00