Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
GPR112	0	genome.wustl.edu	37	X	135427620	135427620	+	Silent	SNP	T	T	C			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	X	135427620	135427620	T	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	1	known	silent	c.1755	p.T585	0	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	0	no_errors	0	0	0	33	0	0	20	7	25.93	98	0	0.00	66	31	31.96
SCN2A	0	genome.wustl.edu	37	2	166188030	166188030	+	Silent	SNP	C	C	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	2	166188030	166188030	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	1	known	silent	c.2340	p.H780	0.999	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	0	no_errors	0	0	0	73	0	0	34	5	12.82	211	0	0.00	126	16	11.27
ADAMTS9	0	genome.wustl.edu	37	3	64592729	64592729	+	Nonsense_Mutation	SNP	G	G	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	3	64592729	64592729	G	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	nonsense	c.3381	p.Y1127*	1	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	0	no_errors	0	0	0	59	0	0	43	11	20.37	150	0	0.00	133	19	12.34
FGA	0	genome.wustl.edu	37	4	155506807	155506807	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	4	155506807	155506807	C	T	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	missense	c.1774	p.G592R	0.59	NULL	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	0	no_errors	0	0	0	53	0	0	34	8	19.05	218	0	0.00	142	26	15.38
NIPBL	0	genome.wustl.edu	37	5	37059083	37059083	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	5	37059083	37059083	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	1	known	missense	c.7501	p.R2501W	1	NULL	superfamily_ARM-type_fold	0	no_errors	0	0	0	82	0	0	89	16	15.24	200	0	0.00	186	28	13.08
OFCC1	0	genome.wustl.edu	37	6	9977791	9977791	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	6	9977791	9977791	G	A	SNP	OFCC1	ENST00000316020	human	ensembl	74_37	-1	known	missense	c.11	p.T4I	0.385	NULL	NULL	0	no_errors	0	0	0	33	0	0	37	8	17.78	176	0	0.00	143	22	13.33
MDN1	0	genome.wustl.edu	37	6	90405582	90405582	+	Silent	SNP	C	C	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	6	90405582	90405582	C	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	silent	c.9513	p.Q3171	0.72	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	0	no_errors	0	0	0	25	0	0	22	4	15.38	34	0	0.00	40	3	6.98
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	380	0	0	270	53	16.41	104	0	0.00	85	17	16.67
ESCO2	0	genome.wustl.edu	37	8	27634549	27634549	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	8	27634549	27634549	G	A	SNP	ESCO2	ENST00000305188	human	ensembl	74_37	1	known	missense	c.724	p.E242K	0.008	NULL	NULL	0	no_errors	0	0	0	74	0	0	59	17	22.37	156	0	0.00	127	28	17.95
ADHFE1	0	genome.wustl.edu	37	8	67357602	67357602	+	Missense_Mutation	SNP	T	T	C			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	8	67357602	67357602	T	C	SNP	ADHFE1	ENST00000396623	human	ensembl	74_37	1	known	missense	c.503	p.I168T	1	pfam_ADH_Fe	pfam_ADH_Fe	0	no_errors	0	0	0	41	0	0	43	6	12.24	172	0	0.00	147	28	16.00
PRICKLE1	0	genome.wustl.edu	37	12	42864131	42864131	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	12	42864131	42864131	C	T	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.163	p.E55K	1	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	0	no_errors	0	0	0	33	0	0	34	3	8.11	226	0	0.00	208	39	15.79
ATP2C2	0	genome.wustl.edu	37	16	84456271	84456271	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	16	84456271	84456271	G	A	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	1	known	missense	c.811	p.G271R	1	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	0	no_errors	rs201615601	G->A	0	33	0	0	22	5	18.52	153	0	0.00	141	15	9.62
CACTIN	0	genome.wustl.edu	37	19	3620801	3620801	+	Splice_Site	SNP	C	C	G			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	19	3620801	3620801	C	G	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	splice_site	c.439-1	e2-1	1	0	0	0	no_errors	0	0	0	10	0	0	19	2	9.52	139	0	0.00	81	8	8.99
ARHGAP21	0	genome.wustl.edu	37	10	24883930	24883931	+	Frame_Shift_Ins	INS	-	-	A			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	10	24883930	24883931	0	A	INS	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	frame_shift_ins	c.3825_3824	p.K1275fs	1.000:1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	0	no_errors	0	0	0	120	0	0	76	19	20	82	0	0.00	96	7	6.80
ARHGAP21	0	genome.wustl.edu	37	10	24883931	24883932	+	Frame_Shift_Ins	INS	-	-	C			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	10	24883931	24883932	0	C	INS	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	frame_shift_ins	c.3824_3823	p.K1275fs	1.000:1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	0	no_errors	0	0	0	121	0	0	75	19	20.21	84	0	0.00	98	7	6.67
MT-ND6	0	genome.wustl.edu	37	MT	14339	14339	+	Missense_Mutation	SNP	A	A	G			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	MT	14339	14339	A	G	SNP	MT-ND6	ENST00000361681	human	ensembl	74_37	-1	known	missense	c.335	p.V112A	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	pfam_NADH_UbQ/plastoQ_OxRdtase_su6	0	no_errors	0	0	0	53	0	0	48	19	28.36	5	0	0.00	2	0	0.00
RIC3	0	genome.wustl.edu	37	11	8190532	8190532	+	Missense_Mutation	SNP	G	G	A			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	11	8190532	8190532	G	A	SNP	RIC3	ENST00000309737	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	1	NULL	NULL	0	no_errors	0	0	0	22	0	0	27	4	12.9	18	0	0.00	8	0	0.00
EVI5L	0	genome.wustl.edu	37	19	7927379	7927379	+	Missense_Mutation	SNP	C	C	T			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	19	7927379	7927379	C	T	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	1	known	missense	c.1906	p.L636F	1	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	0	no_errors	0	0	0	19	0	0	15	4	21.05	19	0	0.00	10	0	0.00
LOC100996415	0	genome.wustl.edu	37	22	20343332	20343332	+	RNA	SNP	A	A	G			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	22	20343332	20343332	A	G	SNP	LOC100996415	ENST00000454636	human	ensembl	74_37	1	known	rna	NULL	NULL	0.12	0	0	0	no_errors	0	0	0	25	0	0	32	3	8.57	6	0	0.00	10	0	0.00
SAP30L	0	genome.wustl.edu	37	5	153826204	153826204	+	Frame_Shift_Del	DEL	C	C	-			TCGA-ZB-A96Q-01A-11D-A428-09	TCGA-ZB-A96Q-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3db163fe-386d-4492-a269-6288aa6cba9f	4d446598-e198-464c-b665-589a2857cedf	5	153826204	153826204	C	0	DEL	SAP30L	ENST00000297109	human	ensembl	74_37	1	known	frame_shift_del	c.40	p.A16fs	1	NULL	NULL	0	no_errors	0	0	0	9	0	0	5	2	28.57	16	0	0.00	9	0	0.00