Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
KRTAP5-5	0	genome.wustl.edu	37	11	1651393	1651393	+	Missense_Mutation	SNP	C	C	G			TCGA-ZB-A96R-01A-11D-A428-09	TCGA-ZB-A96R-10A-01D-A42B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1dcfb980-8d1e-42cc-aa00-b9de341e8d67	a5bbff14-0f5a-48b6-bd1f-ff202c445824	11	1651393	1651393	C	G	SNP	KRTAP5-5	ENST00000399676	human	ensembl	74_37	1	known	missense	c.323	p.A108G	0.949	NULL	NULL	0	no_errors	0	0	0	42	0	0	49	4	7.41	3	0	0.00	9	2	18.18
MT-RNR2	0	genome.wustl.edu	37	MT	2349	2349	+	RNA	SNP	G	G	A			TCGA-ZB-A96R-01A-11D-A428-09	TCGA-ZB-A96R-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dcfb980-8d1e-42cc-aa00-b9de341e8d67	a5bbff14-0f5a-48b6-bd1f-ff202c445824	MT	2349	2349	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	0	0	0	88	0	0	104	13	11.11	0	0	0.00	0	0	0.00
SOX8	0	genome.wustl.edu	37	16	1032197	1032197	+	Missense_Mutation	SNP	G	G	T			TCGA-ZB-A96R-01A-11D-A428-09	TCGA-ZB-A96R-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dcfb980-8d1e-42cc-aa00-b9de341e8d67	a5bbff14-0f5a-48b6-bd1f-ff202c445824	16	1032197	1032197	G	T	SNP	SOX8	ENST00000293894	human	ensembl	74_37	1	known	missense	c.275	p.G92V	1	superfamily_HMG_box_dom	pfam_HMG_box_dom,pfam_Sox_N,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	0	no_errors	0	0	0	22	0	0	14	4	22.22	3	0	0.00	2	0	0.00
HS3ST4	0	genome.wustl.edu	37	16	25703804	25703804	+	Silent	SNP	G	G	A			TCGA-ZB-A96R-01A-11D-A428-09	TCGA-ZB-A96R-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dcfb980-8d1e-42cc-aa00-b9de341e8d67	a5bbff14-0f5a-48b6-bd1f-ff202c445824	16	25703804	25703804	G	A	SNP	HS3ST4	ENST00000331351	human	ensembl	74_37	1	known	silent	c.66	p.P22	1	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	0	no_errors	0	0	0	21	0	0	14	4	22.22	11	0	0.00	8	0	0.00
FNBP4	0	genome.wustl.edu	37	11	47744589	47744591	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-ZB-A96R-01A-11D-A428-09	TCGA-ZB-A96R-10A-01D-A42B-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dcfb980-8d1e-42cc-aa00-b9de341e8d67	a5bbff14-0f5a-48b6-bd1f-ff202c445824	11	47744589	47744591	GGA	0	DEL	FNBP4	ENST00000263773	human	ensembl	74_37	-1	known	in_frame_del	c.2744_2742	p.P918in_frame_del	0.925:0.888:0.174	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	0	no_errors	0	0	0	50	0	0	28	3	9.68	3	0	0.00	1	0	0.00