writing sdrf to THYM.merger.sdrf.txt ------------------------------------------------------------------ 2016-02-12 17:30:03.296169 . ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/THYM/22223826/infile2.input.tsv'] Make a softlink...... Flag: False. Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/THYM/22223826/infile2.input.tsv Make a softlink is done.