Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain CCDC30 728621 genome.wustl.edu 37 1 43030190 43030191 + In_Frame_Ins INS - - CCTCAGGTGATCCACCCACCTCGG novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000390640 +1 known p.7in_frame_insQVIHPPRP 0.063:0.057 - - - - - - - - - NULL NFASC 23114 genome.wustl.edu 37 1 204939750 204939750 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_015090.3 +1 reviewed p.P348L 1.000 89 0% 109 50.5% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_I-set,superfamily_SSF48726 PLB1 151056 genome.wustl.edu 37 2 28812899 28812899 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_153021.4 +1 validated p.R682C 0.000 73 0% 83 20.5% 1 0% possibly_damaging(0.88) tolerated(0.05) deleterious(0.689) NULL PLEKHH2 130271 genome.wustl.edu 37 2 43986092 43986092 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_172069.3 +1 validated p.A1332V 0.717 166 0.6% 117 19.7% 0 - benign(0.017) tolerated(0.42) neutral(0.015) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 ZC3H6 376940 genome.wustl.edu 37 2 113069431 113069445 + In_Frame_Del DEL CCGAAGAAAATCAAA CCGAAGAAAATCAAA - novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 CCGAAGAAAATCAAA CCGAAGAAAATCAAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_198581.2 +1 validated p.PKKIK222in_frame_del 1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999 - - - - - - - - - NULL HHLA2 11148 genome.wustl.edu 37 3 108072489 108072489 + Missense_Mutation SNP C C A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_007072.2 +1 provisional p.L94I 0.999 295 0% 200 18.5% 0 - possibly_damaging(0.58) deleterious(0) deleterious(0.643) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 KIAA2018 205717 genome.wustl.edu 37 3 113378747 113378747 + Silent SNP G G C novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_001009899.2 -1 validated p.L594 0.193 553 0% 314 36.6% 1 0% - - - NULL ITGB5 3693 genome.wustl.edu 37 3 124515330 124515330 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_002213.3 -1 provisional p.C533Y 1.000 186 0% 157 58.6% 135 40.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA GMPS 8833 genome.wustl.edu 37 3 155639983 155639983 + Silent SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_003875.2 +1 reviewed p.G442 0.950 36 0% 21 52.4% 8 87.5% - - - superfamily_Adenine nucleotide alpha hydrolases-like DDX60 55601 genome.wustl.edu 37 4 169183899 169183899 + Missense_Mutation SNP G G T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_017631.5 -1 validated p.P1027T 1.000 287 0% 115 49.6% 9 66.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_P-loop containing nucleoside triphosphate hydrolases MYO10 4651 genome.wustl.edu 37 5 16670992 16670992 + Nonsense_Mutation SNP A A C novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_012334.2 -1 validated p.Y1842* 0.035 67 0% 29 27.6% 13 7.6% - - - HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 SLC35A4 113829 genome.wustl.edu 37 5 139947311 139947311 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_080670.2 +1 provisional p.P186L 0.984 128 0% 97 50.5% 57 40.3% benign(0.077) tolerated(0.82) neutral(0.006) HMMPfam_Nuc_sug_transp PCDHGA5 56110 genome.wustl.edu 37 5 140745817 140745817 + Missense_Mutation SNP G G T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_018918.2 +1 reviewed p.Q640H 1.000 172 0% 86 30.2% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PDE6A 5145 genome.wustl.edu 37 5 149294554 149294554 + Missense_Mutation SNP T T A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_000440.2 -1 reviewed p.K317M 1.000 158 0% 117 32.5% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781 TBX20 57057 genome.wustl.edu 37 7 35284638 35284638 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_001077653.2 -1 reviewed p.G193S 1.000 68 0% 124 24.2% 0 - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2 PKHD1L1 93035 genome.wustl.edu 37 8 110465053 110465053 + Missense_Mutation SNP C C A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_177531.4 +1 validated p.T2205N 0.319 31 0% 21 33.3% 0 - probably_damaging(0.984) deleterious(0.02) deleterious(0.814) HMMPfam_G8 TMEM2 23670 genome.wustl.edu 37 9 74345013 74345013 + Missense_Mutation SNP G G C novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_013390.2 -1 validated p.R644G 0.183 428 0% 213 19.7% 3 66.6% probably_damaging(0.984) tolerated(0.07) deleterious(0.750) superfamily_Pectin lyase-like PRKCQ 5588 genome.wustl.edu 37 10 6527124 6527124 + Silent SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000397178 -1 known p.R109Q 0.000 369 0% 165 64.2% 1 100% - - - NULL MSRB2 22921 genome.wustl.edu 37 10 23393074 23393074 + Silent SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_012228.3 +1 validated p.G40 0.405 292 0% 163 32.5% 20 30% - - - NULL KIAA1462 57608 genome.wustl.edu 37 10 30317023 30317023 + Missense_Mutation SNP C C G novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_020848.2 -1 validated p.R685P 1.000 109 0% 58 65.5% 4 75% possibly_damaging(0.746) deleterious(0.04) deleterious(0.623) NULL C10orf62 414157 genome.wustl.edu 37 10 99350211 99350211 + Missense_Mutation SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_001009997.2 +1 validated p.R186Q 0.003 97 0% 83 45.8% 2 50% probably_damaging(0.994) tolerated(0.12) deleterious(0.713) NULL OR52M1 119772 genome.wustl.edu 37 11 4566854 4566854 + Missense_Mutation SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_001004137.1 +1 validated p.R145H 0.000 395 0% 141 58.2% 0 - benign(0.02) tolerated(0.25) neutral(0.038) HMMPfam_7tm_1,superfamily_SSF81321 ENSG00000251143 0 genome.wustl.edu 37 11 71728572 71728572 + RNA SNP T T G novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000502284 +1 known NULL 0.000 23 0% 20 20% 0 - - - - - DDX10 1662 genome.wustl.edu 37 11 108546431 108546431 + Missense_Mutation SNP A A G novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_004398.2 +1 reviewed p.K119R 1.000 375 0.3% 94 46.8% 6 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases KRT1 3848 genome.wustl.edu 37 12 53071954 53071954 + Missense_Mutation SNP A A T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_006121.3 -1 reviewed p.I287N 1.000 112 0% 49 24.5% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_Filament RNF17 56163 genome.wustl.edu 37 13 25404700 25404700 + Missense_Mutation SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_031277.2 +1 reviewed p.R775H 1.000 269 0% 115 21.7% 0 - probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Staphylococcal nuclease,superfamily_Tudor/PWWP/MBT RTN1 6252 genome.wustl.edu 37 14 60194064 60194064 + Silent SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_021136.2 -1 reviewed p.S446 0.163 5 0.000 5 1.000 2 100% - - - NULL MIR487A 619555 genome.wustl.edu 37 14 101518837 101518837 + RNA SNP A A G novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000384827 +1 known NULL 1.000 47 0% 23 17.4% 0 - - - - - ATP2A1 487 genome.wustl.edu 37 16 28898595 28898595 + Silent SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_173201.2 +1 reviewed p.S210 1.000 39 0% 46 56.5% 2 50% - - - HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M TP53 7157 genome.wustl.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 byCluster TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_000546.4 -1 reviewed p.R273C 0.830 156 0.6% 85 87.1% 77 96.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_p53-like transcription factors,HMMPfam_P53 FECH 2235 genome.wustl.edu 37 18 55222096 55222096 + Missense_Mutation SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_001012515.2 -1 reviewed p.R304Q 1.000 105 0% 58 70.7% 12 83.3% probably_damaging(0.991) tolerated(0.07) deleterious(0.763) HMMPfam_Ferrochelatase,superfamily_Chelatase NAPSA 9476 genome.wustl.edu 37 19 50862271 50862271 + Silent SNP G G T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_004851.1 -1 reviewed p.I344 0.995 41 0% 30 53.3% 0 - - - - HMMPfam_Asp,superfamily_Pept_Aspartic PPP2R1A 5518 genome.wustl.edu 37 19 52715971 52715971 + Missense_Mutation SNP C C G novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_014225.5 +1 reviewed p.P179R 1.000 94 0% 49 34.7% 127 55.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HEAT,superfamily_ARM repeat MMP24 10893 genome.wustl.edu 37 20 33834666 33834666 + Silent SNP T T C novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_006690.3 +1 reviewed p.Y90 1.000 155 0% 149 56.4% 0 - - - - HMMPfam_PG_binding_1,superfamily_PGBD-like PTPRT 11122 genome.wustl.edu 37 20 40877410 40877410 + Silent SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000454126 -1 known p.T378I 1.000 282 0% 203 62.6% 0 - - - - NULL CASS4 57091 genome.wustl.edu 37 20 55012467 55012467 + Missense_Mutation SNP A A G novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_020356.3 +1 validated p.E95G 0.646 132 0% 129 22.5% 0 - benign(0) tolerated(0.21) neutral(0.044) NULL SMARCB1 6598 genome.wustl.edu 37 22 24175801 24175801 + Silent SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_003073.3 +1 reviewed p.T343 0.335 53 0% 36 19.4% 195 34.3% - - - HMMPfam_SNF5 ENSG00000211459 0 genome.wustl.edu 37 MT 690 690 + RNA SNP T T C novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000389680 +1 known NULL NULL 260 0% 145 96.6% 1623 98.6% - - - - ENSG00000210082 0 genome.wustl.edu 37 MT 2636 2636 + RNA SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 ENST00000387347 +1 known NULL NULL 221 0% 123 97.6% 1939 98.1% - - - - PHKA2 5256 genome.wustl.edu 37 X 18943866 18943866 + Nonsense_Mutation SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_000292.2 -1 reviewed p.R497* 1.000 253 0.8% 198 66.7% 0 - - - - HMMPfam_PHK_AB NYX 60506 genome.wustl.edu 37 X 41307173 41307173 + Silent SNP C C T novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_022567.2 +1 reviewed p.L11 0.996 26 0% 14 35.7% 0 - - - - NULL CXorf66 347487 genome.wustl.edu 37 X 139038878 139038878 + Missense_Mutation SNP G G A novel TCGA-A5-A0G3-01A-11W-A062-09 TCGA-A5-A0G3-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7113c822-9f31-4f46-9d10-cf7c97ad4910 f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861 NM_001013403.2 -1 validated p.A88V 0.000 597 0% 415 17.6% 0 - probably_damaging(0.965) tolerated(0.13) deleterious(0.659) NULL