Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain TNFRSF8 943 genome.wustl.edu 37 1 12164472 12164472 + Missense_Mutation SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001243.3 +1 reviewed p.S102Y 0.632 67 0% 192 19.8% 3 0% probably_damaging(0.96) deleterious(0.01) deleterious(0.808) HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like SPEN 23013 genome.wustl.edu 37 1 16199400 16199400 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_015001.2 +1 reviewed p.S58T 1.000 112 0% 279 16.5% 2 50% possibly_damaging(0.574) deleterious(0) deleterious(0.641) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 LDLRAP1 26119 genome.wustl.edu 37 1 25883750 25883750 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_015627.2 +1 reviewed p.R151G 1.000 20 0% 71 25.4% 16 62.5% probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729 AHDC1 27245 genome.wustl.edu 37 1 27875518 27875520 + In_Frame_Del DEL AGG AGG - rs111827498 byCluster;by1000genomes TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 AGG AGG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001029882.2 -1 validated p.S1036in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL RNF19B 127544 genome.wustl.edu 37 1 33402720 33402720 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_153341.2 -1 validated p.G629E 0.162 250 0% 621 15.6% 66 0% benign(0.001) deleterious(0) neutral(0.445) NULL ZMYM4 9202 genome.wustl.edu 37 1 35836101 35836101 + Nonsense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005095.2 +1 validated p.Q352* 1.000 264 0.4% 387 33.6% 1 100% - - - HMMPfam_zf-FCS,HMMSmart_SM00746 EPS15 2060 genome.wustl.edu 37 1 51913765 51913765 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001981.2 -1 reviewed p.P202A 1.000 208 0% 353 18.1% 8 0% probably_damaging(0.971) deleterious(0) deleterious(0.857) HMMSmart_SM00027,superfamily_EF-hand VCAM1 7412 genome.wustl.edu 37 1 101196883 101196883 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001078.2 +1 reviewed p.T445S 0.000 229 0% 374 17.9% 15 0% benign(0.001) tolerated(0.75) neutral(0.002) HMMPfam_C2-set,superfamily_Immunoglobulin CLCC1 23155 genome.wustl.edu 37 1 109474022 109474022 + Frame_Shift_Del DEL G G - rs144751975 by1000genomes TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000369972 -1 known p.L249fs 0.000 - - - - - - - - - HMMPfam_MCLC MAN1A2 10905 genome.wustl.edu 37 1 117944984 117944984 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_006699.3 +1 validated p.P160R 1.000 484 0% 756 15.6% 6 66.6% benign(0.001) tolerated(0.24) neutral(0.037) NULL FMO5 2330 genome.wustl.edu 37 1 146680608 146680608 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001461.2 -1 reviewed p.F212L 1.000 143 0% 399 16.8% 0 - benign(0.024) tolerated(0.12) neutral(0.262) HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain OTUD7B 56957 genome.wustl.edu 37 1 149916930 149916930 + Nonsense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_020205.2 -1 validated p.S453* 1.000 97 0% 256 27.7% 12 58.3% - - - NULL SETDB1 9869 genome.wustl.edu 37 1 150917638 150917638 + Nonstop_Mutation SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000368960 +1 known p.*398Y 0.000 47 0% 162 16% 2 0% - - - NULL CERS2 29956 genome.wustl.edu 37 1 150939619 150939619 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_022075.3 -1 reviewed p.W224C 1.000 190 0% 574 13.8% 98 17.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724 FLG2 388698 genome.wustl.edu 37 1 152325313 152325313 + Missense_Mutation SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001014342.2 -1 provisional p.R1650I 0.000 769 0% 1799 41.3% 0 - benign(0.049) tolerated(0.17) neutral(0.062) NULL NES 10763 genome.wustl.edu 37 1 156639679 156639679 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_006617.1 -1 reviewed p.A1434D 0.001 27 0% 121 14.9% 6 0% probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL OR10T2 128360 genome.wustl.edu 37 1 158368476 158368476 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001004475.1 -1 provisional p.R261W 0.003 123 0% 284 24.6% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) HMMPfam_7tm_1,superfamily_SSF81321 IFI16 3428 genome.wustl.edu 37 1 159019380 159019380 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000295809 +1 known p.F552L 0.001 418 0% 877 13.5% 24 0% benign(0.043) tolerated(0.65) neutral(0.005) NULL KIFAP3 22920 genome.wustl.edu 37 1 170001029 170001029 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014970.2 -1 reviewed p.R280P 1.000 425 0% 737 12.1% 11 18.1% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_KAP,superfamily_ARM repeat CNTN2 6900 genome.wustl.edu 37 1 205022358 205022358 + Silent SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005076.2 +1 reviewed p.A15 0.000 12 0% 45 28.9% 0 - - - - NULL LPIN1 23175 genome.wustl.edu 37 2 11913779 11913779 + Missense_Mutation SNP T T A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_145693.1 +1 reviewed p.D210E 0.993 153 0% 279 21.9% 6 0% benign(0) tolerated(0.77) neutral(0.001) NULL RAD51AP2 729475 genome.wustl.edu 37 2 17698753 17698753 + Silent SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001099218.2 -1 provisional p.L310 0.983 167 0% 187 20.9% 0 - - - - NULL VIT 5212 genome.wustl.edu 37 2 37035894 37035894 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_053276.3 +1 validated p.E557K 1.000 50 0% 102 21.6% 0 - probably_damaging(0.996) tolerated(0.22) deleterious(0.504) HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 GNLY 10578 genome.wustl.edu 37 2 85924688 85924688 + Silent SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_006433.3 +1 reviewed p.D105 0.000 29 0% 49 18.4% 29 0% - - - HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin FAHD2A 51011 genome.wustl.edu 37 2 96072864 96072864 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_016044.2 +1 validated p.V141M 1.000 80 0% 163 17.2% 26 7.6% possibly_damaging(0.824) deleterious(0.01) deleterious(0.718) HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel POU3F3 5455 genome.wustl.edu 37 2 105473102 105473102 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_006236.1 +1 provisional p.P378 1.000 18 0% 47 29.8% 0 - - - - HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA IL37 27178 genome.wustl.edu 37 2 113671373 113671373 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014439.3 +1 reviewed p.P29 0.000 37 0% 134 23.9% 0 - - - - NULL C2orf69 205327 genome.wustl.edu 37 2 200790180 200790180 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_153689.5 +1 validated p.E243 0.474 202 0% 263 25.1% 2 0% - - - HMMPfam_UPF0565 CACNA2D3 55799 genome.wustl.edu 37 3 55052334 55052334 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_018398.2 +1 reviewed p.D993H 1.000 80 0% 102 23.5% 1 0% benign(0.394) tolerated(0.11) neutral(0.398) NULL ARHGAP31 57514 genome.wustl.edu 37 3 119102004 119102005 + Frame_Shift_Ins INS - - T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_020754.2 +1 reviewed p.E206fs 1.000:1.000 - - - - - - - - - HMMSmart_SM00324,superfamily_GTPase activation domain GAP SI 6476 genome.wustl.edu 37 3 164733771 164733771 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001041.3 -1 reviewed p.R1286K 0.358 454 0% 953 11.3% 0 - benign(0.005) tolerated(1) - HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases TNK2 10188 genome.wustl.edu 37 3 195608999 195608999 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001010938.1 -1 reviewed p.D333E 1.000 19 0% 65 13.8% 5 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like DHX15 1665 genome.wustl.edu 37 4 24578163 24578163 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001358.2 -1 reviewed p.I70 1.000 234 0% 426 18.5% 100 18% - - - NULL SLC34A2 10568 genome.wustl.edu 37 4 25669569 25669569 + Silent SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_006424.2 +1 reviewed p.T197 0.996 51 0% 85 20% 243 26.7% - - - HMMPfam_Na_Pi_cotrans DCK 1633 genome.wustl.edu 37 4 71889365 71889365 + Missense_Mutation SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_000788.2 +1 reviewed p.N164T 0.995 147 0% 244 25.4% 15 33.3% benign(0) tolerated(0.37) neutral(0.019) HMMPfam_dNK,superfamily_SSF52540 SMAD1 4086 genome.wustl.edu 37 4 146475175 146475175 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001003688.1 +1 reviewed p.R413C 1.000 382 0% 504 52.6% 8 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain GPM6A 2823 genome.wustl.edu 37 4 176556076 176556076 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005277.3 -1 validated p.R273W 1.000 164 0% 239 37.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HSPA4 3308 genome.wustl.edu 37 5 132400704 132400704 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_002154.3 +1 validated p.S47L 1.000 222 0% 431 27.1% 22 45.4% benign(0) tolerated(0.59) neutral(0.004) HMMPfam_HSP70,superfamily_SSF53067 SLC4A9 83697 genome.wustl.edu 37 5 139744004 139744004 + Missense_Mutation SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_031467.2 +1 validated p.T482N 0.837 31 0% 63 27% 0 - possibly_damaging(0.704) deleterious(0.01) deleterious(0.659) HMMPfam_HCO3_cotransp PCDHGB5 56101 genome.wustl.edu 37 5 140779296 140779296 + Silent SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_018925.2 +1 reviewed p.G534 1.000 15 0% 29 41.4% 1 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CYFIP2 26999 genome.wustl.edu 37 5 156760372 156760372 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001037332.2 +1 validated p.T768I 1.000 391 0% 644 25% 39 38.4% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_FragX_IP C6orf201 404220 genome.wustl.edu 37 6 4099434 4099434 + Splice_Site SNP T T G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001085401.1 +1 validated e2+2 0.998 114 0% 236 12.3% 0 - - - - - OR2B6 26212 genome.wustl.edu 37 6 27925216 27925216 + Silent SNP A A G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_012367.1 +1 provisional p.L66 0.750 363 0% 454 21.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 GNL1 2794 genome.wustl.edu 37 6 30522855 30522855 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005275.3 -1 validated p.R118Q 0.049 140 0% 253 17.8% 28 25% benign(0.003) tolerated(0.4) neutral(0.016) NULL GSTA5 221357 genome.wustl.edu 37 6 52697702 52697702 + Silent SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_153699.1 -1 provisional p.V167 0.644 258 0.4% 822 13.4% 0 - - - - HMMPfam_GST_C,superfamily_GST_C_like COL9A1 1297 genome.wustl.edu 37 6 71010027 71010027 + Nonsense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001851.4 -1 reviewed p.Q51* 1.000 143 0% 247 16.2% 0 - - - - HMMSmart_TSPN IBTK 25998 genome.wustl.edu 37 6 82943921 82943921 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_015525.2 -1 reviewed p.L125F 1.000 63 0% 108 36.1% 2 50% probably_damaging(0.961) tolerated(0.17) neutral(0.463) superfamily_Ankyrin repeat FAXC 84553 genome.wustl.edu 37 6 99729107 99729107 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_032511.2 -1 validated p.T388I 1.000 303 0% 584 27.4% 0 - possibly_damaging(0.919) deleterious(0.01) deleterious(0.775) NULL GRIK2 2898 genome.wustl.edu 37 6 102074349 102074349 + Silent SNP A A G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_021956.4 +1 reviewed p.G126 0.970 404 0% 500 19.2% 0 - - - - HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I SMPD2 6610 genome.wustl.edu 37 6 109764976 109764976 + Silent SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_003080.2 +1 validated p.N380 0.849 11 0% 35 17.1% 18 33.3% - - - NULL PTPRK 5796 genome.wustl.edu 37 6 128304103 128304103 + Missense_Mutation SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001135648.1 -1 validated p.D1143G 1.000 255 0% 320 23.1% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 LOC100289471 100289471 genome.wustl.edu 37 6 169649046 169649046 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 XM_002342681.1 +1 model p.R111C 0.000 26 0% 59 22% 24 0% - - - NULL FERD3L 222894 genome.wustl.edu 37 7 19184613 19184613 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_152898.2 -1 validated p.R125W 1.000 102 0% 144 27.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic ABCA13 154664 genome.wustl.edu 37 7 48349686 48349686 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_152701.3 +1 reviewed p.S3155C 0.002 240 0% 406 25.6% 0 - possibly_damaging(0.714) - - NULL TRIP6 7205 genome.wustl.edu 37 7 100468262 100468262 + Missense_Mutation SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_003302.2 +1 reviewed p.V299A 1.000 23 0% 78 19.2% 153 33.3% probably_damaging(0.979) deleterious(0.04) deleterious(0.771) HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) SRRT 51593 genome.wustl.edu 37 7 100478977 100478977 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_015908.5 +1 validated p.R65H 1.000 27 0% 105 19% 47 29.7% unknown(0) deleterious(0.01) - NULL FLNC 2318 genome.wustl.edu 37 7 128495272 128495272 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001458.4 +1 reviewed p.I2385M 1.000 30 0% 96 20.8% 0 - possibly_damaging(0.925) deleterious(0) deleterious(0.818) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin ANGPT2 285 genome.wustl.edu 37 8 6366483 6366483 + Missense_Mutation SNP T T G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001147.2 -1 reviewed p.I434L 1.000 111 0% 234 15.8% 6 0% benign(0) tolerated(0.54) neutral(0.007) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like SLC35G5 83650 genome.wustl.edu 37 8 11189361 11189361 + Missense_Mutation SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_054028.1 +1 reviewed p.D249A 0.969 94 0% 143 18.2% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_SSF103481 PXDNL 137902 genome.wustl.edu 37 8 52412280 52412280 + Missense_Mutation SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_144651.4 -1 validated p.D144G 0.993 448 0% 1102 14.6% 2 50% benign(0.036) tolerated(0.23) neutral(0.044) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like LACTB2 51110 genome.wustl.edu 37 8 71573967 71573967 + Splice_Site SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_016027.2 -1 validated e2+2 1.000 337 0% 758 18.1% 0 - - - - - ZFHX4 79776 genome.wustl.edu 37 8 77765710 77765710 + Nonsense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_024721.4 +1 validated p.R2140* 1.000 356 0% 575 19.3% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 MMP16 4325 genome.wustl.edu 37 8 89128813 89128813 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005941.4 -1 reviewed p.P336A 1.000 220 0% 273 18.7% 0 - probably_damaging(0.987) deleterious(0.04) deleterious(0.785) superfamily_Hemopexin-like domain BAI1 575 genome.wustl.edu 37 8 143623556 143623556 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001702.2 +1 reviewed p.G1321S 0.991 13 0% 22 27.3% 0 - benign(0.008) tolerated(0.52) neutral(0.009) NULL OPLAH 26873 genome.wustl.edu 37 8 145106347 145106347 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000426825 -1 known p.G1249 0.566 1 0.000 4 1.000 65 40% unknown(0) - - HMMPfam_Hydantoinase_B IKBKAP 8518 genome.wustl.edu 37 9 111640295 111640295 + Nonsense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_003640.3 -1 reviewed p.Q1279* 0.808 152 0% 319 13.5% 23 4.3% - - - NULL ITIH2 3698 genome.wustl.edu 37 10 7773961 7773961 + Splice_Site SNP T T A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_002216.2 +1 validated e13+2 1.000 215 0% 359 43.2% 0 - - - - - ITGA8 8516 genome.wustl.edu 37 10 15714703 15714703 + Nonsense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_003638.1 -1 provisional p.S241* 1.000 309 0% 978 12% 2 0% - - - HMMSmart_Int_alpha,superfamily_SSF69318 ANKRD26 22852 genome.wustl.edu 37 10 27353001 27353001 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014915.2 -1 validated p.E427Q 0.001 93 0% 375 12.8% 1 0% possibly_damaging(0.949) deleterious(0.01) deleterious(0.798) NULL ZNF25 219749 genome.wustl.edu 37 10 38241315 38241315 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_145011.2 -1 provisional p.E371Q 0.080 255 0% 750 12.4% 4 0% probably_damaging(0.999) tolerated(0.1) deleterious(0.777) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DLG5 9231 genome.wustl.edu 37 10 79590072 79590072 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_004747.3 -1 reviewed p.D638H 1.000 100 0% 262 19.1% 11 18.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like EMX2 2018 genome.wustl.edu 37 10 119307682 119307682 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_004098.3 +1 reviewed p.R233Q 1.000 47 0% 86 29.1% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL OR4A5 81318 genome.wustl.edu 37 11 51411812 51411812 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001005272.3 -1 validated p.T195I 0.002 273 0% 629 24.6% 0 - benign(0.155) tolerated(0.13) neutral(0.266) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like RTN3 10313 genome.wustl.edu 37 11 63486359 63486359 + Missense_Mutation SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_201428.1 +1 validated p.K110Q 0.004 85 0% 195 22.6% 2 0% probably_damaging(0.959) deleterious(0.01) deleterious(0.808) NULL RBM4 5936 genome.wustl.edu 37 11 66411589 66411589 + Missense_Mutation SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_002896.2 +1 validated p.Y361H 1.000 65 0% 239 13.8% 160 11.8% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL DPAGT1 1798 genome.wustl.edu 37 11 118969160 118969160 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001382.3 -1 reviewed p.F227 1.000 104 0% 214 19.6% 6 50% - - - HMMPfam_Glycos_transf_4 C12orf40 283461 genome.wustl.edu 37 12 40044041 40044041 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001031748.2 +1 validated p.R191C 0.804 81 0% 144 19.4% 0 - benign(0.002) - - NULL SPATS2 65244 genome.wustl.edu 37 12 49919872 49919872 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_023071.3 +1 validated p.A491V 0.000 108 0% 216 22.2% 21 23.8% benign(0) tolerated(0.51) neutral(0.009) NULL SLC26A10 65012 genome.wustl.edu 37 12 58016693 58016693 + Nonsense_Mutation SNP T T G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_133489.2 +1 validated p.Y305* 0.997 101 0% 233 16.7% 0 - - - - HMMPfam_Sulfate_transp LRRIQ1 84125 genome.wustl.edu 37 12 85515547 85515547 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001079910.1 +1 validated p.S1150R 0.000 102 0% 114 25.4% 0 - benign(0) tolerated(0.52) neutral(0.009) NULL GOLGA2P5 55592 genome.wustl.edu 37 12 100560206 100560206 + RNA SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NR_024261.1 -1 validated NULL 0.987 52 0% 103 15.5% 0 - - - - - STAB2 55576 genome.wustl.edu 37 12 104046447 104046447 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_017564.9 +1 reviewed p.L457F 1.000 128 0% 198 26.3% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1 SLC46A3 283537 genome.wustl.edu 37 13 29286895 29286895 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001135919.1 -1 validated p.A328T 0.996 106 0% 157 22.9% 2 0% possibly_damaging(0.527) tolerated(0.21) neutral(0.222) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter RALGAPA1 253959 genome.wustl.edu 37 14 36041793 36041793 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_194301.2 -1 provisional p.F1941 1.000 151 0% 220 15.9% 1 100% - - - HMMPfam_Rap_GAP,superfamily_SSF111347 FAN1 22909 genome.wustl.edu 37 15 31196980 31196980 + Silent SNP A A G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014967.4 +1 reviewed p.P38 0.484 62 0% 96 20.8% 0 - - - - NULL TYRO3 7301 genome.wustl.edu 37 15 41864678 41864678 + Silent SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_006293.3 +1 reviewed p.P597 0.992 86 0% 230 20.4% 1 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like PLA2G4D 283748 genome.wustl.edu 37 15 42361123 42361123 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_178034.3 -1 validated p.P749 0.179 4 0.000 17 0.471 0 - - - - HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like SEMA6D 80031 genome.wustl.edu 37 15 48055291 48055291 + Missense_Mutation SNP A A T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_153618.1 +1 reviewed p.N246I 0.998 118 0% 158 24.1% 0 - possibly_damaging(0.898) tolerated(0.07) deleterious(0.673) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain WDR72 256764 genome.wustl.edu 37 15 53957889 53957890 + Frame_Shift_Ins INS - - TT novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_182758.2 -1 validated p.V616fs 0.074:0.054 - - - - - - - - - NULL CHRNA5 1138 genome.wustl.edu 37 15 78882360 78882360 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_000745.2 +1 provisional p.K209N 1.000 567 0% 1008 26.4% 0 - benign(0.026) deleterious(0.02) neutral(0.384) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD ERCC4 2072 genome.wustl.edu 37 16 14041488 14041488 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005236.2 +1 reviewed p.G679C 0.000 254 0% 378 21.2% 0 - benign(0.342) deleterious(0.05) neutral(0.453) NULL GPRC5B 51704 genome.wustl.edu 37 16 19883868 19883868 + Silent SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_016235.1 -1 reviewed p.L100 0.630 31 0% 52 21.2% 14 14.2% - - - HMMPfam_7tm_3 DNAH3 55567 genome.wustl.edu 37 16 21061233 21061233 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_017539.1 -1 provisional p.Q1449E 1.000 198 0% 335 17.9% 0 - probably_damaging(0.969) deleterious(0.01) deleterious(0.817) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases SNX29P2 440352 genome.wustl.edu 37 16 21393500 21393500 + Silent SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000324089 +1 known p.N31 0.997 282 0% 505 11.5% 0 - - - - NULL NUP93 9688 genome.wustl.edu 37 16 56855441 56855441 + Missense_Mutation SNP T T A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014669.3 +1 validated p.V197E 0.997 113 0% 397 10.3% 23 13% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL TP53 7157 genome.wustl.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_000546.4 -1 reviewed p.R248Q 1.000 65 0% 172 45.9% 47 65.9% probably_damaging(1) deleterious(0.01) deleterious(0.905) PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53 EFCAB5 374786 genome.wustl.edu 37 17 28380832 28380832 + Missense_Mutation SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_198529.3 +1 validated p.K620N 0.001 805 0.1% 1235 17.7% 1 0% possibly_damaging(0.727) tolerated(0.33) neutral(0.289) superfamily_EF-hand ENSG00000247185 0 genome.wustl.edu 37 17 29096960 29096960 + RNA SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000499895 +1 known NULL 1.000 59 0% 90 34.4% 6 16.6% - - - - FBXO47 494188 genome.wustl.edu 37 17 37093539 37093539 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001008777.2 -1 validated p.D416E 0.010 88 0% 118 24.6% 0 - benign(0.002) tolerated(0.66) neutral(0.003) NULL FKBP10 60681 genome.wustl.edu 37 17 39975643 39975643 + Silent SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000455106 +1 known p.S46L 0.996 15 0% 52 23.1% 238 36.9% - - - HMMPfam_FKBP_C,superfamily_FKBP-like TMC6 11322 genome.wustl.edu 37 17 76120211 76120211 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001127198.1 -1 reviewed p.T314M 1.000 4 0.000 11 0.545 27 59.2% unknown(0) deleterious(0.01) - NULL LPIN2 9663 genome.wustl.edu 37 18 2940682 2940682 + Frame_Shift_Del DEL C C - novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014646.2 -1 reviewed p.E207fs 1.000 - - - - - - - - - NULL LAMA1 284217 genome.wustl.edu 37 18 6976068 6976068 + Silent SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_005559.2 -1 validated p.A2119 0.517 110 0% 248 17.3% 0 - - - - superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_II CTAGE1 64693 genome.wustl.edu 37 18 19996478 19996478 + Missense_Mutation SNP A A G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_172241.2 -1 validated p.W433R 0.780 448 0% 1318 10.7% 0 - benign(0.175) deleterious(0.02) neutral(0.399) NULL PLIN4 729359 genome.wustl.edu 37 19 4512369 4512369 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001080400.1 -1 provisional p.V521I 0.021 22 0% 68 27.9% 0 - possibly_damaging(0.797) tolerated(0.38) neutral(0.317) NULL DNM2 1785 genome.wustl.edu 37 19 10908165 10908165 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001005361.1 +1 reviewed p.A436S 1.000 48 0% 138 21% 12 8.3% benign(0) tolerated(0.49) neutral(0.011) HMMPfam_Dynamin_M ZNF799 90576 genome.wustl.edu 37 19 12502970 12502970 + Missense_Mutation SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001080821.1 -1 validated p.G81V 0.001 278 0% 493 18.3% 3 66.6% probably_damaging(0.988) deleterious(0.04) deleterious(0.786) NULL TIMM50 92609 genome.wustl.edu 37 19 39971387 39971387 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001001563.1 +1 validated p.R68P 0.814 25 0% 51 13.7% 0 - benign(0) tolerated(0.33) neutral(0.024) NULL DEDD2 162989 genome.wustl.edu 37 19 42713872 42713872 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_133328.2 -1 provisional p.S190C 0.311 42 0% 116 15.5% 24 12.5% probably_damaging(0.954) tolerated(0.06) deleterious(0.720) NULL ARHGAP35 2909 genome.wustl.edu 37 19 47423149 47423149 + Nonsense_Mutation SNP T T A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_004491.4 +1 reviewed p.L406* 0.454 192 0% 426 41.5% 5 80% - - - HMMSmart_SM00441 PPP2R1A 5518 genome.wustl.edu 37 19 52705196 52705196 + Splice_Site SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_014225.5 +1 reviewed e2-1 1.000 55 0% 141 19.1% 0 - - - - - NLRP5 126206 genome.wustl.edu 37 19 56544997 56544997 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_153447.4 +1 reviewed p.G846A 0.000 169 0% 434 17.1% 0 - benign(0.422) tolerated(0.07) neutral(0.456) superfamily_SSF52047 TGM6 343641 genome.wustl.edu 37 20 2376000 2376000 + Silent SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_198994.2 +1 validated p.L114 0.996 63 0% 196 12.2% 0 - - - - HMMPfam_Transglut_N,superfamily_E set domains PLCB1 23236 genome.wustl.edu 37 20 8630054 8630054 + Silent SNP A A C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_015192.2 +1 reviewed p.R184 0.993 88 0% 211 15.6% 1 100% - - - superfamily_EF-hand NANP 140838 genome.wustl.edu 37 20 25596672 25596672 + Silent SNP A A G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_152667.2 -1 validated p.N212 0.008 159 0% 327 18.3% 3 66.6% - - - superfamily_HAD-like RALGAPB 57148 genome.wustl.edu 37 20 37137784 37137784 + Missense_Mutation SNP C C G novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_020336.2 +1 validated p.L269V 1.000 236 0% 276 25.7% 5 20% benign(0.243) tolerated(0.12) neutral(0.285) NULL TSHZ2 128553 genome.wustl.edu 37 20 51872367 51872367 + Silent SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_173485.4 +1 validated p.H790 0.917 219 0.5% 465 15.3% 1 0% - - - NULL C20orf43 51507 genome.wustl.edu 37 20 55092205 55092205 + Missense_Mutation SNP A A T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_016407.3 +1 validated p.E230D 0.006 81 0% 194 30.9% 53 39.6% benign(0) tolerated(0.52) neutral(0.009) HMMPfam_DUF602 DSCAM 1826 genome.wustl.edu 37 21 41450620 41450620 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001389.3 -1 validated p.D1569N 1.000 145 0% 244 23.4% 0 - probably_damaging(1) tolerated(0.13) deleterious(0.752) NULL GGTLC2 91227 genome.wustl.edu 37 22 22989735 22989735 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_199127.2 +1 validated p.T162M 0.984 19 0% 85 36.5% 16 0% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_G_glu_transpept ISX 91464 genome.wustl.edu 37 22 35463113 35463113 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001008494.1 +1 validated p.R11S 0.006 24 0% 64 17.2% 0 - benign(0.327) deleterious(0) deleterious(0.547) NULL ZC3H7B 23264 genome.wustl.edu 37 22 41734151 41734151 + Silent SNP C C T rs146031977 by1000genomes TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000396532 +1 known p.G82 0.001 5 0.000 16 0.312 0 - - - - NULL ENSG00000210077 0 genome.wustl.edu 37 MT 1642 1642 + RNA SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000387342 +1 novel NULL NULL 268 0% 232 78.9% 1709 97.9% - - - - SHROOM2 357 genome.wustl.edu 37 X 9900789 9900789 + Missense_Mutation SNP C C A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001649.2 +1 reviewed p.Q1156K 0.000 16 0% 32 25% 4 0% benign(0.423) tolerated(0.22) neutral(0.180) NULL SMS 6611 genome.wustl.edu 37 X 22025268 22025268 + Missense_Mutation SNP C C A rs140761412 by1000genomes TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000415881 +1 known p.L260I 0.001 1 0.000 5 1.000 0 - benign(0.005) tolerated(0.1) neutral(0.286) NULL LOC389842 389842 genome.wustl.edu 37 X 25664094 25664094 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 XM_372200.7 -1 model p.D117E 1.000 136 0% 139 28.1% 85 0% - - - HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like MAGEB1 4112 genome.wustl.edu 37 X 30269195 30269195 + Silent SNP T T C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_002363.4 +1 reviewed p.F195 0.000 108 0% 164 21.3% 0 - - - - HMMPfam_MAGE PHF16 9767 genome.wustl.edu 37 X 46845188 46845188 + Missense_Mutation SNP G G T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001077445.1 +1 reviewed p.A41S 1.000 142 0% 215 21.9% 2 0% benign(0.002) tolerated(0.56) neutral(0.006) HMMPfam_EPL1 PHF8 23133 genome.wustl.edu 37 X 54022170 54022170 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_015107.2 -1 reviewed p.V427I 0.239 68 0% 94 23.4% 17 0% benign(0) tolerated(0.21) neutral(0.044) NULL ERCC6L 54821 genome.wustl.edu 37 X 71425356 71425356 + Missense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_017669.2 -1 validated p.M1087I 0.001 396 0% 635 17.6% 0 - benign(0) tolerated(0.17) neutral(0.059) NULL MUM1L1 139221 genome.wustl.edu 37 X 105449987 105449987 + Nonsense_Mutation SNP C C T novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 ENST00000337685 +1 known p.Q188* 0.000 147 0% 222 23.4% 0 - - - - NULL COL4A6 1288 genome.wustl.edu 37 X 107434698 107434698 + Missense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001847.2 -1 reviewed p.R417C 0.846 164 0% 354 33.1% 0 - unknown(0) deleterious(0.01) - HMMPfam_Collagen SASH3 54440 genome.wustl.edu 37 X 128922505 128922505 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_018990.3 +1 reviewed p.M84I 1.000 51 0% 111 21.6% 24 0% benign(0.156) deleterious(0) neutral(0.459) NULL ELF4 2000 genome.wustl.edu 37 X 129203441 129203441 + Nonsense_Mutation SNP G G A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001127197.1 -1 reviewed p.Q341* 0.022 123 0% 240 17.1% 6 0% - - - superfamily_SSF46785 ARHGAP4 393 genome.wustl.edu 37 X 153178235 153178235 + Missense_Mutation SNP T T A novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_001666.4 -1 reviewed p.K487N 0.001 15 0% 26 34.6% 12 0% benign(0.013) deleterious(0) neutral(0.445) NULL RENBP 5973 genome.wustl.edu 37 X 153206946 153206946 + Missense_Mutation SNP G G C novel TCGA-A5-A0G5-01A-11W-A062-09 TCGA-A5-A0G5-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb a8b6afc5-a37c-418b-89c2-dd13bb82f708 NM_002910.5 -1 reviewed p.N310K 0.013 8 0.000 30 0.567 47 87.2% benign(0) deleterious(0.04) neutral(0.349) superfamily_Six-hairpin glycosidases,HMMPfam_GlcNAc_2-epim