Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain FMO5 2330 genome.wustl.edu 37 1 146687330 146687330 + Silent SNP T T A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001461.2 -1 reviewed p.R106 0.068 114 0% 112 41.1% - - - - - HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain OR10J3 441911 genome.wustl.edu 37 1 159283723 159283723 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001004467.1 -1 provisional p.A243T 0.997 127 0% 146 41.1% - - benign(0.333) deleterious(0.01) deleterious(0.510) HMMPfam_7tm_1,superfamily_SSF81321 RC3H1 149041 genome.wustl.edu 37 1 173907927 173907927 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_172071.2 -1 validated p.D1112N 1.000 221 0% 244 35.7% - - possibly_damaging(0.886) deleterious(0) deleterious(0.791) NULL TNR 7143 genome.wustl.edu 37 1 175372574 175372574 + Missense_Mutation SNP G G T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_003285.2 -1 validated p.S226R 0.934 73 0% 104 45.2% - - possibly_damaging(0.786) tolerated(0.39) neutral(0.310) HMMSmart_SM00181,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_EGF/Laminin PDIA6 10130 genome.wustl.edu 37 2 10927483 10927483 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_005742.2 -1 validated p.A361T 1.000 149 0% 195 14.9% - - probably_damaging(0.966) deleterious(0.01) deleterious(0.814) superfamily_Thioredoxin-like GEN1 348654 genome.wustl.edu 37 2 17961897 17961897 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001130009.1 +1 validated p.P473L 0.513 86 0% 80 42.5% - - benign(0.288) deleterious(0.04) neutral(0.438) NULL CCDC148 130940 genome.wustl.edu 37 2 159028648 159028648 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_138803.3 -1 validated p.E585K 1.000 131 0% 90 37.8% - - benign(0.33) tolerated(0.13) neutral(0.356) NULL SCN1A 6323 genome.wustl.edu 37 2 166894510 166894510 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_006920.4 -1 reviewed p.G897S 1.000 174 0% 220 36.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_SSF81324 CX3CR1 1524 genome.wustl.edu 37 3 39307964 39307964 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001337.3 -1 reviewed p.E13K 0.001 54 0% 81 34.6% - - benign(0.071) tolerated(0.11) neutral(0.277) superfamily_Family A G protein-coupled receptor-like CTNNB1 1499 genome.wustl.edu 37 3 41266137 41266137 + Missense_Mutation SNP C C T rs121913409 byCluster TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001098209.1 +1 reviewed p.S45F 1.000 71 0% 86 25.6% - - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL KBTBD5 131377 genome.wustl.edu 37 3 42727820 42727820 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_152393.2 +1 validated p.R237H 1.000 17 0% 21 38.1% - - benign(0.013) tolerated(0.19) neutral(0.050) HMMPfam_BACK PBRM1 55193 genome.wustl.edu 37 3 52620565 52620565 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_018165.4 -1 validated p.R1056Q 1.000 199 0% 223 37.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PLD1 5337 genome.wustl.edu 37 3 171410200 171410200 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_002662.3 -1 validated p.Y420 1.000 145 0% 189 38.6% - - - - - superfamily_Phospholipase D/nuclease CCDC39 339829 genome.wustl.edu 37 3 180334333 180334333 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_181426.1 -1 validated p.R853C 0.000 111 0% 100 30% - - unknown(0) - - NULL LRBA 987 genome.wustl.edu 37 4 151236754 151236754 + Missense_Mutation SNP T T C novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_006726.2 -1 validated p.D2562G 1.000 81 0% 100 51% - - probably_damaging(0.989) tolerated(0.14) deleterious(0.689) superfamily_WD40 repeat-like C5orf42 65250 genome.wustl.edu 37 5 37227086 37227086 + Silent SNP A A G novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad ENST00000508244 -1 known p.S537 0.001 43 0% 48 33.3% - - - - - NULL PIK3R1 5295 genome.wustl.edu 37 5 67589212 67589229 + In_Frame_Del DEL TGTGGTTGAATTAATAAA TGTGGTTGAATTAATAAA - novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 TGTGGTTGAATTAATAAA TGTGGTTGAATTAATAAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_181523.1 +1 reviewed p.VVELIN401in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain OTP 23440 genome.wustl.edu 37 5 76932706 76932706 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_032109.2 -1 reviewed p.P129 0.929 46 0% 54 18.5% - - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like TRPC7 57113 genome.wustl.edu 37 5 135610458 135610458 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad ENST00000513104 -1 known p.R344H 1.000 90 1.1% 124 21.8% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL PCDHB2 56133 genome.wustl.edu 37 5 140475802 140475802 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_018936.2 +1 reviewed p.S476 0.027 90 0% 151 35.1% - - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin ARAP3 64411 genome.wustl.edu 37 5 141052313 141052313 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_022481.5 -1 reviewed p.E425K 1.000 40 0% 79 35.4% - - probably_damaging(0.991) tolerated(0.08) deleterious(0.744) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 BTBD9 114781 genome.wustl.edu 37 6 38256151 38256151 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001099272.1 -1 reviewed p.D451N 1.000 131 0% 185 39.5% - - possibly_damaging(0.696) tolerated(0.18) neutral(0.305) superfamily_Gal_bind_like GLP1R 2740 genome.wustl.edu 37 6 39034026 39034026 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_002062.3 +1 validated p.Y152 0.979 157 0% 204 36.8% - - - - - HMMPfam_7tm_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like ENPP5 59084 genome.wustl.edu 37 6 46135827 46135827 + Missense_Mutation SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_021572.4 -1 validated p.G58V 1.000 73 0% 92 27.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like MIR588 693173 genome.wustl.edu 37 6 126805843 126805843 + RNA SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad ENST00000384900 +1 known NULL 0.128 27 0% 25 56% - - - - - - ADGB 79747 genome.wustl.edu 37 6 146977924 146977924 + Silent SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_024694.3 +1 provisional p.I140 1.000 109 0% 86 27.9% - - - - - HMMSmart_SM00230,superfamily_Cysteine proteinases GPR31 2853 genome.wustl.edu 37 6 167571176 167571176 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_005299.2 -1 validated p.P48 0.993 16 0% 10 40% - - - - - HMMPfam_7tm_1,superfamily_SSF81321 TYW1 55253 genome.wustl.edu 37 7 66582543 66582543 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_018264.2 +1 validated p.R546C 1.000 200 0% 242 35.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes POM121 9883 genome.wustl.edu 37 7 72413472 72413472 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_172020.1 +1 reviewed p.P715 0.004 60 0% 83 21.7% - - - - - NULL HEPACAM2 253012 genome.wustl.edu 37 7 92848715 92848715 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001039372.1 -1 provisional p.G43 1.000 173 0% 213 39% - - - - - HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin PTPRZ1 5803 genome.wustl.edu 37 7 121668612 121668612 + Nonsense_Mutation SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_002851.2 +1 reviewed p.C1665* 1.000 189 0% 236 17.4% - - - - - NULL HTR5A 3361 genome.wustl.edu 37 7 154863136 154863136 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_024012.2 +1 reviewed p.P176L 1.000 88 0% 118 34.7% - - benign(0.229) deleterious(0) neutral(0.468) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CHRNA2 1135 genome.wustl.edu 37 8 27327284 27327284 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_000742.3 -1 reviewed p.I96 0.803 62 0% 92 32.6% - - - - - HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like NRG1 3084 genome.wustl.edu 37 8 32621864 32621864 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_013956.3 +1 reviewed p.E628K 0.974 20 0% 43 37.2% - - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_Neuregulin ABRA 137735 genome.wustl.edu 37 8 107773628 107773630 + In_Frame_Del DEL CTT CTT - novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_139166.4 -1 validated p.K261in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL CSMD3 114788 genome.wustl.edu 37 8 113275879 113275879 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_198123.1 -1 validated p.P3284L 1.000 76 0% 144 28.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain KANK1 23189 genome.wustl.edu 37 9 712177 712177 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_015158.2 +1 reviewed p.R471C 1.000 79 0% 91 31.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ANK ABL1 25 genome.wustl.edu 37 9 133729537 133729537 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_007313.2 +1 reviewed p.A75T 0.997 143 0% 143 37.1% - - benign(0.003) tolerated(0.05) neutral(0.345) superfamily_SH3-domain ARID5B 84159 genome.wustl.edu 37 10 63845593 63845605 + Frame_Shift_Del DEL CAAACATGAAATA CAAACATGAAATA - novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 CAAACATGAAATA CAAACATGAAATA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_032199.2 +1 validated p.K445fs 1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.994 - - - - - - - - - NULL PTEN 5728 genome.wustl.edu 37 10 89692864 89692874 + Frame_Shift_Del DEL CAATCATGTTG CAATCATGTTG - novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 CAATCATGTTG CAATCATGTTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad ENST00000371953 +1 known p.N117fs 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II SORBS1 10580 genome.wustl.edu 37 10 97096798 97096798 + Missense_Mutation SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001034954.1 -1 validated p.W1040L 0.984 205 0% 231 40.3% - - benign(0.001) tolerated(0.47) neutral(0.011) NULL WNT8B 7479 genome.wustl.edu 37 10 102241669 102241669 + Missense_Mutation SNP G G T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_003393.3 +1 reviewed p.G123V 1.000 115 0% 150 40% - - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_wnt,HMMSmart_WNT1 DNHD1 144132 genome.wustl.edu 37 11 6566366 6566366 + Missense_Mutation SNP C C G novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_144666.2 +1 provisional p.C1399W 0.000 85 0% 151 39.7% - - possibly_damaging(0.542) tolerated(0.06) deleterious(0.506) HMMPfam_DHC_N2 SCUBE2 57758 genome.wustl.edu 37 11 9049103 9049103 + Missense_Mutation SNP T T C novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_020974.2 -1 validated p.R808G 1.000 146 0% 229 41.9% - - benign(0.192) deleterious(0.03) neutral(0.383) superfamily_Spermadhesin CUB domain NUP160 23279 genome.wustl.edu 37 11 47837087 47837087 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_015231.1 -1 validated p.H544Y 0.017 237 0% 290 40% - - benign(0.151) tolerated(0.06) neutral(0.336) NULL PPP2R5B 5526 genome.wustl.edu 37 11 64694308 64694308 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_006244.3 +1 reviewed p.N108 0.990 118 0% 188 38.3% - - - - - HMMPfam_B56 CARNS1 57571 genome.wustl.edu 37 11 67186369 67186369 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_020811.1 +1 validated p.P46 0.057 38 0% 52 32.7% - - - - - NULL IFT46 56912 genome.wustl.edu 37 11 118425753 118425753 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_020153.3 -1 validated p.F153 1.000 137 0% 169 40.8% - - - - - NULL DDX6 1656 genome.wustl.edu 37 11 118656929 118656929 + Missense_Mutation SNP A A G novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_004397.4 -1 reviewed p.I11T 1.000 86 0% 133 41.4% - - benign(0.031) deleterious(0) neutral(0.446) NULL PVRL1 5818 genome.wustl.edu 37 11 119549253 119549253 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_002855.4 -1 reviewed p.R101Q 0.990 51 0% 81 48.1% - - possibly_damaging(0.73) tolerated(0.39) neutral(0.283) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin CLEC7A 64581 genome.wustl.edu 37 12 10280146 10280146 + Silent SNP T T C novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad ENST00000422474 -1 known p.P134 0.077 139 0% 135 32.6% - - - - - NULL KRAS 3845 genome.wustl.edu 37 12 25398284 25398284 + Missense_Mutation SNP C C A rs121913529 byCluster TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_033360.2 -1 reviewed p.G12V 1.000 172 0% 267 37.8% - - benign(0.048) deleterious(0) neutral(0.448) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases WDR66 144406 genome.wustl.edu 37 12 122389385 122389385 + Splice_Site SNP G G A rs150901834 by1000genomes TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_144668.4 +1 validated e8-1 0.955 313 0% 375 32% - - - - - - KNTC1 9735 genome.wustl.edu 37 12 123087694 123087694 + Missense_Mutation SNP A A G novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_014708.4 +1 reviewed p.K1669E 0.917 98 0% 115 11.3% - - probably_damaging(0.995) deleterious(0.04) deleterious(0.806) HMMPfam_Rod_C ZMYM2 7750 genome.wustl.edu 37 13 20577068 20577068 + Nonsense_Mutation SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_003453.2 +1 validated p.S309* 1.000 164 0% 212 39.2% - - - - - NULL POU4F1 5457 genome.wustl.edu 37 13 79175715 79175715 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_006237.3 -1 validated p.P365 0.940 57 0% 94 17% - - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like GPR135 64582 genome.wustl.edu 37 14 59930847 59930847 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_022571.5 -1 validated p.S366 0.725 5 0.000 9 0.556 - - - - - HMMPfam_7tm_1,superfamily_SSF81321 SEMA6D 80031 genome.wustl.edu 37 15 48063190 48063190 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_153618.1 +1 reviewed p.P810 0.964 74 0% 92 32.6% - - - - - NULL FBN1 2200 genome.wustl.edu 37 15 48782151 48782151 + Silent SNP G G A rs150126098 by1000genomes TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_000138.4 -1 reviewed p.C993 0.494 80 0% 88 44.3% - - - - - HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases RNF111 54778 genome.wustl.edu 37 15 59359127 59359127 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_017610.6 +1 reviewed p.H511Y 1.000 161 0% 230 38.3% - - probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL USP31 57478 genome.wustl.edu 37 16 23085117 23085117 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_020718.3 -1 validated p.T754M 1.000 69 0% 89 39.3% - - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_UCH,superfamily_Cysteine proteinases CTCF 10664 genome.wustl.edu 37 16 67660616 67660616 + Nonsense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_006565.2 +1 reviewed p.Q506* 1.000 84 0% 117 41% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CDH1 999 genome.wustl.edu 37 16 68853328 68853328 + Frame_Shift_Del DEL G G - novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_004360.3 +1 reviewed p.G571fs 1.000 - - - - - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like GLG1 2734 genome.wustl.edu 37 16 74525111 74525111 + Nonsense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_012201.5 -1 validated p.R413* 1.000 106 0% 174 37.4% - - - - - HMMPfam_Cys_rich_FGFR CAMTA2 23125 genome.wustl.edu 37 17 4883229 4883229 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_015099.3 -1 validated p.P463L 0.951 12 0% 19 42.1% - - benign(0.117) deleterious(0) neutral(0.454) NULL POLR2A 5430 genome.wustl.edu 37 17 7406810 7406810 + Splice_Site SNP G G T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_000937.3 +1 validated e18+1 1.000 77 0% 117 47% - - - - - - CDRT15 146822 genome.wustl.edu 37 17 14139188 14139188 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001007530.1 -1 provisional p.P184 0.012 82 0% 97 22.7% - - - - - NULL NFE2L1 4779 genome.wustl.edu 37 17 46133897 46133897 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_003204.2 +1 validated p.G220 0.037 141 0% 158 38.6% - - - - - NULL SLC26A11 284129 genome.wustl.edu 37 17 78219991 78219991 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_173626.3 +1 reviewed p.A379V 0.989 19 0% 24 50% - - benign(0.018) tolerated(0.11) neutral(0.272) HMMPfam_Sulfate_transp CETN1 1068 genome.wustl.edu 37 18 580850 580850 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_004066.1 +1 reviewed p.E148K 1.000 81 0% 143 35% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand LOC729774 729774 genome.wustl.edu 37 18 14361898 14361898 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad XM_001131264.2 -1 model p.S27 0.167 36 0% 43 34.9% - - - - - NULL C18orf8 29919 genome.wustl.edu 37 18 21107861 21107861 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_013326.3 +1 validated p.A431V 0.084 78 0% 91 37.4% - - benign(0) tolerated(0.61) neutral(0.004) NULL OR7D4 125958 genome.wustl.edu 37 19 9325149 9325149 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001005191.1 -1 provisional p.R122Q 0.998 112 0% 185 33.5% - - benign(0.083) deleterious(0.03) neutral(0.370) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like S1PR2 9294 genome.wustl.edu 37 19 10335260 10335260 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_004230.3 -1 validated p.R108W 1.000 10 0% 21 33.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 ZSWIM4 65249 genome.wustl.edu 37 19 13941180 13941180 + Silent SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_023072.2 +1 validated p.C762 1.000 26 0% 37 29.7% - - - - - NULL SYCN 342898 genome.wustl.edu 37 19 39694673 39694673 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001080468.2 -1 provisional p.A74 0.002 24 0% 23 30.4% - - - - - NULL ZNF576 79177 genome.wustl.edu 37 19 44103126 44103126 + Missense_Mutation SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001145347.1 +1 validated p.A77T 0.998 73 0% 101 42.6% - - possibly_damaging(0.951) deleterious(0.01) deleterious(0.800) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 TMC4 147798 genome.wustl.edu 37 19 54673291 54673291 + Missense_Mutation SNP C C T novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_001145303.1 -1 validated p.R140Q 0.000 91 0% 118 43.2% - - benign(0) tolerated(0.62) neutral(0.004) NULL SGK2 10110 genome.wustl.edu 37 20 42198072 42198072 + Silent SNP G G A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_016276.3 +1 reviewed p.R152 0.998 46 0% 65 29.2% - - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CYLC1 1538 genome.wustl.edu 37 X 83129492 83129492 + Silent SNP G G C novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_021118.1 +1 provisional p.G592 0.000 89 0% 78 30.8% - - - - - NULL MAGEC2 51438 genome.wustl.edu 37 X 141291699 141291699 + Missense_Mutation SNP C C A novel TCGA-A5-A0VO-01A-21D-A10G-09 TCGA-A5-A0VO-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d3e15789-ef5b-4983-ac0f-fad6d86ddac8 b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad NM_016249.3 -1 reviewed p.W25C 0.000 73 0% 87 40.2% - - possibly_damaging(0.649) deleterious(0.02) deleterious(0.611) NULL