Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain CHD5 26038 genome.wustl.edu 37 1 6206464 6206464 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015557.1 -1 provisional p.V537A 1.000 31 0% 18 44.4% - - benign(0.01) tolerated(0.81) neutral(0.001) HMMSmart_CHROMO,superfamily_Chromodomain-like RPL22 6146 ucsc.edu 37 1 6257785 6257785 + Frame_Shift_Del DEL T - - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000983.3 -1 reviewed p.K15fs 1 - - - - - - - - - HMMPfam_Ribosomal_L22e KIF1B 23095 genome.wustl.edu 37 1 10357111 10357111 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015074.3 +1 reviewed p.D627G 1.000 124 0% 173 45.7% - - probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL PGD 5226 genome.wustl.edu 37 1 10479585 10479585 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002631.2 +1 reviewed p.S441G 1.000 113 0% 115 23.5% - - benign(0.001) deleterious(0) neutral(0.445) HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like VPS13D 55187 genome.wustl.edu 37 1 12403039 12403039 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015378.2 +1 reviewed p.E2939V 0.993 59 0% 98 34.7% - - benign(0.051) deleterious(0.04) neutral(0.352) NULL CASP9 842 genome.wustl.edu 37 1 15831170 15831170 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000424908 -1 known p.W110R 0.993 36 0% 41 48.8% - - - - - HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like HSPG2 3339 genome.wustl.edu 37 1 22175257 22175257 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000374695 -1 known p.E2539G 1.000 44 0% 24 66.7% - - probably_damaging(0.998) tolerated(0.11) deleterious(0.746) superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_I-set,superfamily_Immunoglobulin ZBTB40 9923 genome.wustl.edu 37 1 22848120 22848120 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001083621.1 +1 validated p.E1060 0.005 162 0% 192 38% - - - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers HNRNPR 10236 genome.wustl.edu 37 1 23640165 23640165 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001102398.1 -1 reviewed p.T353A 1.000 46 0% 74 28.4% - - benign(0.104) tolerated(0.73) neutral(0.009) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 ASAP3 55616 genome.wustl.edu 37 1 23782465 23782465 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017707.3 -1 reviewed p.S86N 1.000 55 0% 62 38.7% - - benign(0.019) tolerated(1) neutral(0.001) NULL TCEB3 6924 genome.wustl.edu 37 1 24078119 24078119 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003198.2 +1 reviewed p.K368Q 0.998 205 0% 190 48.4% - - probably_damaging(0.998) tolerated(0.06) deleterious(0.797) NULL TCEB3 6924 genome.wustl.edu 37 1 24080909 24080909 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003198.2 +1 reviewed p.C610R 1.000 122 0% 96 37.5% - - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Elongin_A FAM46B 115572 genome.wustl.edu 37 1 27333172 27333172 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052943.3 -1 validated p.C181R 1.000 42 0% 55 32.7% - - possibly_damaging(0.801) tolerated(0.34) neutral(0.325) HMMPfam_DUF1693 AHDC1 27245 genome.wustl.edu 37 1 27878265 27878265 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001029882.2 -1 validated p.V121A 1.000 51 2% 66 33.3% - - unknown(0) deleterious(0) - NULL PTPRU 10076 genome.wustl.edu 37 1 29585086 29585086 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005704.3 +1 reviewed p.L92P 1.000 154 0.6% 189 46% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1 EIF3I 8668 genome.wustl.edu 37 1 32689634 32689634 + Splice_Site SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003757.2 +1 validated e3-1 1.000 40 0% 27 48.1% - - - - - - CSMD2 114784 genome.wustl.edu 37 1 34080137 34080137 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052896.3 -1 validated p.C1994R 1.000 45 0% 38 28.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ZMYM4 9202 genome.wustl.edu 37 1 35884069 35884069 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005095.2 +1 validated p.K1445N 1.000 149 0% 133 36.1% - - probably_damaging(0.972) deleterious(0) deleterious(0.859) NULL EIF2C4 192670 genome.wustl.edu 37 1 36316480 36316480 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017629.2 +1 reviewed p.Q768R 1.000 59 0% 77 37.7% - - benign(0) deleterious(0.03) neutral(0.364) HMMPfam_Piwi,superfamily_Ribonuclease H-like EIF2C1 26523 genome.wustl.edu 37 1 36359938 36359938 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012199.2 +1 reviewed p.H269 1.000 92 0% 76 51.3% - - - - - HMMPfam_PAZ,superfamily_PAZ domain MACF1 23499 genome.wustl.edu 37 1 39854195 39854195 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000372925 +1 known p.R2278G 0.952 98 0% 105 44.8% - - - - - NULL KIAA0754 643314 genome.wustl.edu 37 1 39878252 39878252 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015038.1 +1 predicted p.L772P 0.014 206 0% 175 37.1% - - unknown(0) deleterious(0) - NULL MYCL1 4610 genome.wustl.edu 37 1 40367035 40367035 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001033081.2 -1 validated p.A24 1.000 6 0.000 11 0.455 - - - - - HMMPfam_Myc_N NFYC 4802 genome.wustl.edu 37 1 41218880 41218880 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142588.1 +1 reviewed p.I117V 1.000 42 0% 39 48.7% - - benign(0.081) tolerated(0.12) neutral(0.267) NULL SLFNL1 200172 genome.wustl.edu 37 1 41486224 41486224 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144990.3 -1 validated p.Y37H 0.114 38 0% 40 37.5% - - benign(0.263) tolerated(0.21) neutral(0.071) NULL HIVEP3 59269 genome.wustl.edu 37 1 42045494 42045494 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024503.3 -1 validated p.K1659E 1.000 44 0% 57 52.6% - - probably_damaging(0.979) tolerated(0.4) neutral(0.438) NULL FOXJ3 22887 genome.wustl.edu 37 1 42657002 42657002 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014947.3 -1 validated p.P441 0.985 143 0.7% 149 36.2% - - - - - NULL TIE1 7075 genome.wustl.edu 37 1 43779616 43779616 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005424.2 +1 provisional p.T796A 0.998 41 0% 45 37.8% - - probably_damaging(0.991) tolerated(1) neutral(0.444) NULL MPL 4352 genome.wustl.edu 37 1 43803529 43803529 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005373.2 +1 reviewed p.W4R 1.000 59 0% 76 52.6% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SZT2 23334 genome.wustl.edu 37 1 43912625 43912625 + Splice_Site SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015284.2 +1 predicted e49-1 1.000 17 0% 18 38.9% - - - - - - PTPRF 5792 genome.wustl.edu 37 1 44019487 44019487 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002840.3 +1 reviewed p.D85G 1.000 89 0% 67 28.4% - - benign(0.002) tolerated(0.15) neutral(0.241) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HECTD3 79654 genome.wustl.edu 37 1 45475781 45475781 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024602.5 -1 validated p.P212 0.997 89 0% 78 41% - - - - - superfamily_Galactose-binding domain-like MUTYH 4595 genome.wustl.edu 37 1 45796861 45796861 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001128425.1 -1 reviewed p.M490T 1.000 163 0% 156 28.2% - - benign(0.026) deleterious(0.01) neutral(0.407) HMMPfam_NUDIX,superfamily_Nudix AGBL4 84871 genome.wustl.edu 37 1 49511378 49511378 + Nonsense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032785.3 -1 validated p.E158* 1.000 18 0% 17 41.2% - - - - - NULL ZCCHC11 23318 genome.wustl.edu 37 1 52901119 52901119 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001009881.1 -1 validated p.N1394S 0.869 114 0% 110 50.9% - - benign(0) tolerated(0.54) neutral(0.007) NULL FAM159A 348378 genome.wustl.edu 37 1 53122681 53122681 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001042693.1 +1 validated p.P181H 0.577 363 0% 390 30.8% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TMEM59 9528 genome.wustl.edu 37 1 54506481 54506481 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004872.3 -1 provisional p.R219G 0.252 119 0% 111 35.1% - - benign(0.004) tolerated(0.32) neutral(0.024) NULL CACHD1 57685 genome.wustl.edu 37 1 65157238 65157238 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020925.2 +1 validated p.E1222 0.505 85 0% 127 26% - - - - - NULL JAK1 3716 genome.wustl.edu 37 1 65325866 65325866 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002227.2 -1 reviewed p.A419V 1.000 40 0% 90 45.6% - - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL ZZZ3 26009 genome.wustl.edu 37 1 78034150 78034150 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015534.4 -1 provisional p.D778G 1.000 26 0% 54 44.4% - - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL SH3GLB1 51100 genome.wustl.edu 37 1 87188272 87188272 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016009.3 +1 validated p.A131 0.972 67 1.5% 150 44.7% - - - - - HMMPfam_BAR,HMMSmart_SM00721 CCDC18 343099 genome.wustl.edu 37 1 93705403 93705403 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_206886.2 +1 validated p.L1095F 0.978 236 0% 323 36.2% - - unknown(0) - - superfamily_Prefoldin VCAM1 7412 genome.wustl.edu 37 1 101198223 101198223 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001078.2 +1 reviewed p.V592A 0.490 122 0% 203 42.9% - - probably_damaging(0.98) deleterious(0.02) deleterious(0.807) HMMSmart_SM00409,superfamily_Immunoglobulin STXBP3 6814 genome.wustl.edu 37 1 109340784 109340784 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007269.2 +1 validated p.P458 0.038 184 0% 338 16.9% - - - - - HMMPfam_Sec1,superfamily_Sec1-like SYPL2 284612 genome.wustl.edu 37 1 110019434 110019434 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001040709.1 +1 validated p.D97 0.000 62 0% 91 36.3% - - - - - HMMPfam_MARVEL GSTM2 2946 genome.wustl.edu 37 1 110217456 110217456 + Nonstop_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000848.3 +1 reviewed p.*219Q 0.116 169 0% 198 13.1% - - - - - NULL LRIF1 55791 genome.wustl.edu 37 1 111490908 111490908 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018372.3 -1 validated p.T661 0.228 325 0% 366 35.2% - - - - - NULL DRAM2 128338 genome.wustl.edu 37 1 111663136 111663136 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178454.4 -1 validated e4+2 1.000 59 0% 58 43.1% - - - - - - CTTNBP2NL 55917 genome.wustl.edu 37 1 112998925 112998925 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018704.2 +1 validated p.K271E 1.000 370 0% 396 29.8% - - possibly_damaging(0.608) deleterious(0) deleterious(0.655) HMMPfam_CortBP2 CTTNBP2NL 55917 genome.wustl.edu 37 1 112999369 112999369 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018704.2 +1 validated p.A419S 0.766 390 0% 455 10.8% - - benign(0.4) tolerated(0.19) neutral(0.178) HMMPfam_CortBP2 CSDE1 7812 genome.wustl.edu 37 1 115280120 115280120 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001007553.1 -1 validated p.T125I 1.000 69 0% 64 34.4% - - benign(0.122) deleterious(0.04) neutral(0.359) NULL ITGA10 8515 genome.wustl.edu 37 1 145542254 145542258 + Frame_Shift_Del DEL AAGAG AAGAG - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AAGAG AAGAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003637.3 +1 reviewed p.E1163fs 1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL ANKRD35 148741 genome.wustl.edu 37 1 145558889 145558889 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144698.3 +1 validated p.S170P 1.000 41 0% 83 27.7% - - probably_damaging(0.962) deleterious(0.02) deleterious(0.788) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK HIST2H2BF 440689 genome.wustl.edu 37 1 149783523 149783523 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000427880 -1 known p.V119G 1.000 143 0% 167 18.6% - - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMSmart_H2B,superfamily_Histone-fold MTMR11 10903 genome.wustl.edu 37 1 149901144 149901144 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181873.3 -1 validated p.L597 0.998 135 0% 216 26.4% - - - - - NULL RPRD2 23248 genome.wustl.edu 37 1 150444303 150444303 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015203.3 +1 validated p.K960M 1.000 438 0% 749 26.2% - - benign(0.293) deleterious(0.01) deleterious(0.496) NULL RPRD2 23248 genome.wustl.edu 37 1 150444616 150444616 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015203.3 +1 validated p.E1064 0.636 193 0.5% 348 23.9% - - - - - NULL SETDB1 9869 genome.wustl.edu 37 1 150933142 150933142 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001145415.1 +1 reviewed p.E868D 1.000 216 0.5% 418 28.5% - - probably_damaging(0.987) tolerated(0.06) deleterious(0.759) HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain CDC42SE1 56882 genome.wustl.edu 37 1 151027539 151027539 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001038707.1 -1 validated p.T40A 1.000 138 0% 204 25% - - probably_damaging(0.995) tolerated(1) neutral(0.458) HMMPfam_PBD PSMD4 5710 genome.wustl.edu 37 1 151238503 151238508 + In_Frame_Del DEL GCAGCG GCAGCG - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 GCAGCG GCAGCG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002810.2 +1 reviewed p.RQ230in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMSmart_SM00726 CGN 57530 genome.wustl.edu 37 1 151509213 151509213 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020770.2 +1 validated p.L1105P 1.000 75 0% 100 30% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Myosin_tail_1 TCHHL1 126637 genome.wustl.edu 37 1 152059336 152059336 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008536.1 -1 provisional p.E274D 0.003 412 0% 576 22.7% - - benign(0.209) tolerated(0.37) neutral(0.040) NULL TCHHL1 126637 genome.wustl.edu 37 1 152059713 152059713 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008536.1 -1 provisional p.S149C 0.536 184 0% 278 25.5% - - probably_damaging(0.977) tolerated(0.11) deleterious(0.691) NULL FLG 2312 genome.wustl.edu 37 1 152277218 152277218 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002016.1 -1 reviewed p.R3382C 0.000 313 0% 652 34.8% - - unknown(0) deleterious(0.02) - NULL FLG 2312 genome.wustl.edu 37 1 152280810 152280810 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002016.1 -1 reviewed p.S2184 0.000 267 0% 492 22.8% - - - - - NULL TRIM46 80128 genome.wustl.edu 37 1 155148678 155148678 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_025058.3 +1 validated p.T214A 0.996 53 0% 90 26.7% - - benign(0.221) deleterious(0.02) neutral(0.405) NULL TRIM46 80128 genome.wustl.edu 37 1 155150626 155150626 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_025058.3 +1 validated p.H353R 1.000 64 0% 97 18.6% - - benign(0.002) tolerated(0.41) neutral(0.015) NULL HCN3 57657 genome.wustl.edu 37 1 155257117 155257117 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020897.1 +1 validated p.L544P 1.000 80 0% 100 20% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_cNMP_binding KIAA0907 22889 genome.wustl.edu 37 1 155893424 155893424 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014949.2 -1 predicted p.L316 1.000 105 0% 143 32.2% - - - - - superfamily_Eukaryotic type KH-domain (KH-domain type I) SEMA4A 64218 genome.wustl.edu 37 1 156142782 156142782 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022367.2 +1 provisional p.M434V 0.993 81 0% 105 24.8% - - benign(0.062) deleterious(0.01) neutral(0.410) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema MEF2D 4209 genome.wustl.edu 37 1 156453069 156453069 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005920.2 -1 provisional p.I6V 1.000 142 0% 196 19.9% - - benign(0.296) tolerated(0.27) neutral(0.125) HMMSmart_SM00432,PatternScan_MADS_BOX_1,superfamily_SRF-like INSRR 3645 genome.wustl.edu 37 1 156812197 156812197 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014215.1 -1 validated p.E1077G 1.000 95 0% 126 31% - - possibly_damaging(0.475) deleterious(0.01) deleterious(0.562) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like NTRK1 4914 genome.wustl.edu 37 1 156846290 156846290 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002529.3 +1 reviewed p.G577 0.161 21 0% 26 19.2% - - - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ARHGEF11 9826 genome.wustl.edu 37 1 157014101 157014101 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198236.1 -1 reviewed p.S8R 0.999 94 0% 300 25% - - probably_damaging(0.962) deleterious(0.01) deleterious(0.810) NULL OR10K1 391109 genome.wustl.edu 37 1 158435545 158435545 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001004473.1 +1 provisional p.I65T 0.015 419 0.2% 782 24.3% - - benign(0) tolerated(0.68) neutral(0.002) HMMPfam_7tm_1,superfamily_SSF81321 SPTA1 6708 genome.wustl.edu 37 1 158617423 158617423 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003126.2 -1 reviewed p.N1268D 0.974 72 0% 160 30.6% - - benign(0.001) tolerated(0.14) neutral(0.249) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat OR6N2 81442 genome.wustl.edu 37 1 158747371 158747371 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005278.1 -1 provisional p.S19G 0.031 573 0% 867 25.4% - - benign(0.03) tolerated(0.57) neutral(0.007) superfamily_SSF81321 PYHIN1 149628 genome.wustl.edu 37 1 158909226 158909226 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000368135 +1 known p.A205T 0.000 47 0% 36 36.1% - - possibly_damaging(0.93) tolerated(0.26) neutral(0.410) NULL ATP1A4 480 genome.wustl.edu 37 1 160141197 160141197 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144699.3 +1 reviewed p.L550V 0.749 133 0% 193 36.3% - - benign(0) tolerated(0.36) neutral(0.020) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M ATP1A4 480 genome.wustl.edu 37 1 160143944 160143944 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144699.3 +1 reviewed p.I679V 0.012 121 0% 209 31.6% - - benign(0.002) tolerated(0.05) neutral(0.345) HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M PVRL4 81607 genome.wustl.edu 37 1 161044092 161044092 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030916.2 -1 validated p.A358T 0.006 76 0% 151 33.1% - - possibly_damaging(0.621) deleterious(0.02) deleterious(0.600) NULL RXRG 6258 genome.wustl.edu 37 1 165406395 165406395 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001009598.1 -1 reviewed p.L31 0.001 34 0% 53 17% - - - - - NULL RCSD1 92241 genome.wustl.edu 37 1 167653239 167653239 + Splice_Site SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052862.3 +1 validated e2+1 1.000 69 0% 111 32.4% - - - - - - PRRC2C 23215 genome.wustl.edu 37 1 171501888 171501888 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015172.3 +1 validated p.Q552R 0.710 68 0% 107 22.4% - - unknown(0) tolerated(0.43) - NULL SLC9A11 284525 genome.wustl.edu 37 1 173551124 173551124 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178527.3 -1 validated p.S222G 0.000 51 0% 83 19.3% - - benign(0.145) tolerated(0.5) neutral(0.022) HMMPfam_Na_H_Exchanger FAM5B 57795 genome.wustl.edu 37 1 177250068 177250068 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021165.2 +1 provisional p.M586V 1.000 64 0% 81 28.4% - - benign(0.029) tolerated(0.13) neutral(0.254) NULL CACNA1E 777 genome.wustl.edu 37 1 181741295 181741295 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000721.2 +1 reviewed p.N1689 0.262 195 0% 273 25.6% - - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels LAMC2 3918 genome.wustl.edu 37 1 183204730 183204730 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005562.2 +1 reviewed p.N774S 0.000 77 0% 123 29.3% - - benign(0) tolerated(0.71) neutral(0.002) NULL UCHL5 51377 genome.wustl.edu 37 1 192992122 192992122 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000420791 -1 known p.F151S 0.998 113 0% 249 23.7% - - - - - NULL F13B 2165 genome.wustl.edu 37 1 197019903 197019903 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001994.2 -1 reviewed p.F554 0.468 64 0% 124 31.5% - - - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module DSTYK 25778 genome.wustl.edu 37 1 205129297 205129297 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015375.2 -1 reviewed p.V684F 1.000 228 0% 354 33.6% - - possibly_damaging(0.714) deleterious(0) deleterious(0.703) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CDK18 5129 genome.wustl.edu 37 1 205498672 205498672 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_212503.2 +1 validated p.L431P 1.000 29 0% 31 38.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase LOC642587 642587 genome.wustl.edu 37 1 209605637 209605648 + In_Frame_Del DEL AGCAGCAGCAGC AGCAGCAGCAGC - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AGCAGCAGCAGC AGCAGCAGCAGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001104548.1 +1 validated p.AAAA88in_frame_del 0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000 - - - - - - - - - NULL RCOR3 55758 genome.wustl.edu 37 1 211462694 211462694 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001136223.1 +1 validated p.I299V 1.000 169 0% 305 21.3% - - benign(0) tolerated(1) - NULL HHIPL2 79802 genome.wustl.edu 37 1 222717458 222717458 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024746.3 -1 validated p.L132H 1.000 78 0% 153 29.4% - - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL PARP1 142 genome.wustl.edu 37 1 226564834 226564834 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001618.3 -1 reviewed p.Y639C 1.000 280 0% 486 25.5% - - possibly_damaging(0.939) deleterious(0.04) deleterious(0.734) NULL OBSCN 84033 genome.wustl.edu 37 1 228466933 228466933 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098623.1 +1 reviewed p.P2395H 0.059 20 0% 31 35.5% - - probably_damaging(0.993) - - superfamily_Immunoglobulin TRIM17 51127 genome.wustl.edu 37 1 228602418 228602418 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001024940.2 -1 reviewed p.V119A 0.254 32 0% 36 33.3% - - benign(0.16) tolerated(0.49) neutral(0.025) HMMPfam_zf-B_box,HMMSmart_BBOX NUP133 55746 genome.wustl.edu 37 1 229601226 229601226 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018230.2 -1 reviewed p.N747S 0.011 111 0% 232 24.1% - - benign(0) tolerated(0.87) neutral(0.001) HMMPfam_Nup133 URB2 9816 genome.wustl.edu 37 1 229773830 229773830 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014777.2 +1 provisional p.V1157A 0.044 33 0% 68 36.8% - - benign(0.406) tolerated(0.07) neutral(0.450) NULL LYST 1130 genome.wustl.edu 37 1 235840412 235840412 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000081.2 -1 reviewed p.I3673V 1.000 93 0% 178 17.4% - - probably_damaging(0.987) - - HMMSmart_SM00320,superfamily_WD40 repeat-like LYST 1130 genome.wustl.edu 37 1 235872587 235872587 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000081.2 -1 reviewed p.Q3316R 1.000 77 0% 128 31.2% - - probably_damaging(0.999) - - HMMPfam_Beach,superfamily_BEACH domain KIF26B 55083 genome.wustl.edu 37 1 245849094 245849094 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018012.3 +1 provisional p.D937N 0.999 9 0.000 14 0.429 - - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ZNF670 93474 genome.wustl.edu 37 1 247201353 247201353 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033213.2 -1 validated p.T190A 0.128 103 0% 189 24.3% - - benign(0.007) deleterious(0.04) neutral(0.349) superfamily_SSF57667 ZNF669 79862 genome.wustl.edu 37 1 247264614 247264614 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024804.2 -1 validated p.I153V 0.355 104 0% 175 31.4% - - benign(0) tolerated(0.89) - NULL OR14K1 343170 genome.wustl.edu 37 1 247902074 247902074 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000283225 +1 known p.L53P 0.973 139 0% 272 21% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 TRIM58 25893 genome.wustl.edu 37 1 248023926 248023926 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015431.3 +1 validated p.L143P 0.509 30 0% 49 34.7% - - possibly_damaging(0.902) deleterious(0) deleterious(0.801) NULL OR2T12 127064 genome.wustl.edu 37 1 248458244 248458244 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001004692.1 -1 provisional p.L213M 0.000 120 0% 176 31.8% - - probably_damaging(0.999) tolerated(0.15) deleterious(0.732) HMMPfam_7tm_1,superfamily_SSF81321 TRAPPC12 51112 genome.wustl.edu 37 2 3464076 3464076 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016030.5 +1 validated p.Y549C 1.000 34 0% 34 44.1% - - benign(0.018) tolerated(0.16) neutral(0.060) HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452 GREB1 9687 genome.wustl.edu 37 2 11767168 11767168 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014668.3 +1 reviewed p.Y1463H 0.840 17 0% 17 70.6% - - possibly_damaging(0.485) tolerated(0.25) neutral(0.198) NULL PUM2 23369 genome.wustl.edu 37 2 20494158 20494158 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015317.1 -1 provisional p.Q377 1.000 122 0% 160 39.4% - - - - - NULL C2orf43 60526 genome.wustl.edu 37 2 20990056 20990056 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021925.2 -1 predicted p.A86V 0.000 173 0% 209 34.4% - - benign(0) tolerated(0.55) neutral(0.007) HMMPfam_DUF2305,superfamily_SSF53474 ASXL2 55252 genome.wustl.edu 37 2 25966176 25966176 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018263.4 -1 validated p.R1010 0.031 103 0% 98 34.7% - - - - - NULL EMILIN1 11117 genome.wustl.edu 37 2 27308544 27308544 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007046.3 +1 reviewed e8-2 1.000 14 0% 17 35.3% - - - - - - IFT172 26160 genome.wustl.edu 37 2 27707933 27707933 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015662.1 -1 validated p.I83T 1.000 214 0% 280 44.3% - - possibly_damaging(0.525) deleterious(0) deleterious(0.621) HMMSmart_SM00320,superfamily_WD40 repeat-like ZNF512 84450 genome.wustl.edu 37 2 27826144 27826144 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032434.2 +1 validated p.L302 0.971 318 0% 325 29.8% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 BRE 9577 genome.wustl.edu 37 2 28248229 28248229 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004899.3 +1 validated p.L146P 1.000 108 0% 155 41.9% - - possibly_damaging(0.805) deleterious(0.03) deleterious(0.667) HMMPfam_BRE RASGRP3 25780 genome.wustl.edu 37 2 33741705 33741705 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001139488.1 +1 validated p.L56R 1.000 21 0% 22 45.5% - - probably_damaging(0.994) tolerated(0.08) deleterious(0.752) HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF DHX57 90957 genome.wustl.edu 37 2 39089364 39089364 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198963.1 -1 provisional p.E165D 0.001 159 0% 191 45.5% - - probably_damaging(0.973) tolerated(0.42) neutral(0.429) NULL PKDCC 91461 genome.wustl.edu 37 2 42281210 42281210 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138370.2 +1 validated p.L266Q 1.000 16 0% 10 50% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Protein kinase-like (PK-like) USP34 9736 genome.wustl.edu 37 2 61415811 61415811 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014709.3 -1 validated p.R3356H 1.000 118 0% 135 40% - - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL OTX1 5013 genome.wustl.edu 37 2 63282728 63282728 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014562.2 +1 reviewed p.P114 0.999 21 0% 35 37.1% - - - - - NULL GKN1 56287 genome.wustl.edu 37 2 69207071 69207071 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_019617.3 +1 reviewed p.P128 0.628 107 0% 178 39.9% - - - - - HMMPfam_BRICHOS C2orf42 54980 genome.wustl.edu 37 2 70387891 70387891 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017880.1 -1 predicted p.I461N 1.000 62 0% 69 31.9% - - possibly_damaging(0.929) deleterious(0.04) deleterious(0.725) NULL ATP6V1B1 525 genome.wustl.edu 37 2 71190748 71190748 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001692.3 +1 reviewed p.G369 0.984 52 0% 52 32.7% - - - - - HMMPfam_ATP-synt_ab,superfamily_SSF52540 ZNF638 27332 genome.wustl.edu 37 2 71591149 71591149 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001014972.1 +1 reviewed p.R495H 0.115 111 0% 118 13.6% - - benign(0.027) tolerated(1) neutral(0.002) NULL DYSF 8291 genome.wustl.edu 37 2 71840533 71840533 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001130987.1 +1 reviewed p.P1486H 0.996 41 0% 24 50% - - probably_damaging(0.997) deleterious(0.03) deleterious(0.831) NULL DCTN1 1639 genome.wustl.edu 37 2 74596485 74596485 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004082.3 -1 reviewed p.T509M 0.999 114 0% 100 38% - - probably_damaging(1) tolerated(0.19) deleterious(0.549) NULL CCDC142 84865 genome.wustl.edu 37 2 74708588 74708588 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032779.3 -1 validated p.W367R 0.995 70 0% 60 33.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL HK2 3099 genome.wustl.edu 37 2 75061762 75061762 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000189.4 +1 reviewed p.V19M 1.000 5 0.000 22 0.455 - - benign(0.027) deleterious(0.02) neutral(0.385) HMMPfam_Hexokinase_1,superfamily_SSF53067 LOC730268 730268 genome.wustl.edu 37 2 88019376 88019376 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_002342213.1 +1 model p.D310 0.995 96 0% 91 30.8% - - - - - NULL SMYD1 150572 genome.wustl.edu 37 2 88402646 88402646 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198274.2 +1 provisional p.R320C 1.000 57 0% 72 37.5% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL IGKV2D-28 28883 genome.wustl.edu 37 2 89999466 89999466 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000453166 +1 known p.S90G 1.000 82 0% 108 37% - - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin SLC9A2 6549 genome.wustl.edu 37 2 103324647 103324647 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003048.3 +1 validated p.R713H 0.999 199 0% 282 50% - - possibly_damaging(0.895) tolerated(0.11) deleterious(0.625) NULL MRPS9 64965 genome.wustl.edu 37 2 105708992 105708992 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182640.2 +1 reviewed p.Y262C 1.000 78 0% 109 30.3% - - probably_damaging(0.998) tolerated(0.11) deleterious(0.746) NULL RANBP2 5903 genome.wustl.edu 37 2 109400237 109400237 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006267.4 +1 reviewed p.K3185 1.000 95 0% 112 45.5% - - - - - HMMPfam_Pro_isomerase,superfamily_CSA_PPIase EPB41L5 57669 genome.wustl.edu 37 2 120857849 120857849 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020909.3 +1 validated p.N403S 0.997 117 0% 193 36.3% - - benign(0) tolerated(0.25) neutral(0.037) NULL GLI2 2736 genome.wustl.edu 37 2 121708924 121708924 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005270.4 +1 reviewed p.P120 0.007 22 0% 18 61.1% - - - - - NULL CNTNAP5 129684 genome.wustl.edu 37 2 125671701 125671701 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_130773.2 +1 reviewed p.C1253R 1.000 176 0% 281 39.1% - - benign(0.344) deleterious(0) deleterious(0.553) NULL MYO7B 4648 genome.wustl.edu 37 2 128366304 128366304 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080527.1 +1 provisional p.E889K 0.000 12 0% 14 42.9% - - benign(0) tolerated(0.28) neutral(0.032) NULL POTEF 728378 genome.wustl.edu 37 2 130832048 130832048 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099771.2 -1 validated p.L999 1.000 123 0.8% 144 23.6% - - - - - HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 SMPD4 55627 genome.wustl.edu 37 2 130910683 130910683 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017951.3 -1 validated p.I735T 1.000 29 0% 33 42.4% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL LOC150786 150786 genome.wustl.edu 37 2 132120672 132120672 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001077637.1 -1 validated p.C208R 1.000 562 0.2% 568 33.3% - - - - - superfamily_SSF52540 GPR39 2863 genome.wustl.edu 37 2 133175213 133175213 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001508.2 +1 validated p.E200K 0.219 47 0% 52 38.5% - - benign(0.017) tolerated(0.86) neutral(0.001) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MBD5 55777 genome.wustl.edu 37 2 149226988 149226988 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000416015 +1 known p.H232R 0.991 91 0% 113 34.5% - - - - - NULL MBD5 55777 genome.wustl.edu 37 2 149228063 149228063 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000453884 +1 known p.Y851H 1.000 37 0% 42 33.3% - - - - - NULL NEB 4703 genome.wustl.edu 37 2 152522902 152522902 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004543.4 -1 reviewed p.E1578G 1.000 62 0% 134 33.6% - - probably_damaging(0.96) tolerated(0.06) deleterious(0.726) HMMPfam_Nebulin,HMMSmart_SM00227 NEB 4703 genome.wustl.edu 37 2 152548783 152548783 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004543.4 -1 reviewed p.F664L 1.000 108 0% 172 45.3% - - probably_damaging(0.993) tolerated(0.77) neutral(0.451) NULL ITGB6 3694 genome.wustl.edu 37 2 160958313 160958313 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000888.3 -1 provisional p.S767 0.995 66 0% 102 34.3% - - - - - HMMPfam_Integrin_b_cyt KCNH7 90134 genome.wustl.edu 37 2 163253438 163253439 + Frame_Shift_Ins INS - - A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033272.2 -1 reviewed p.G808fs 1.000:1.000 - - - - - - - - - HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like SCN9A 6335 genome.wustl.edu 37 2 167060465 167060465 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002977.3 -1 reviewed p.G1581C 1.000 30 0% 30 26.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels DLX1 1745 genome.wustl.edu 37 2 172951605 172951605 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000409492 +1 known p.V179 0.004 81 0% 58 29.3% - - - - - HMMSmart_HOX,superfamily_Homeodomain_like DLX1 1745 genome.wustl.edu 37 2 172951798 172951798 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000409492 +1 known p.A244T 0.000 19 0.000 9 0.778 - - - - - NULL ITGA6 3655 genome.wustl.edu 37 2 173356014 173356014 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001079818.1 +1 reviewed p.A948 0.533 176 0% 253 46.2% - - - - - superfamily_Integrin domains WIPF1 7456 genome.wustl.edu 37 2 175436493 175436493 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001077269.1 -1 reviewed p.P347L 0.230 59 0% 68 54.4% - - benign(0) tolerated(0.11) neutral(0.272) NULL WIPF1 7456 genome.wustl.edu 37 2 175439940 175439940 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001077269.1 -1 reviewed p.R117M 1.000 260 0% 327 36.1% - - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL OSBPL6 114880 genome.wustl.edu 37 2 179238672 179238672 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145739.1 +1 reviewed p.S488N 1.000 91 0% 104 34.6% - - benign(0.009) deleterious(0.04) neutral(0.349) NULL TTN 7273 genome.wustl.edu 37 2 179427224 179427224 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000356127 -1 known p.T25309A 1.000 71 0% 104 32.7% - - probably_damaging(0.959) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179437785 179437785 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133378.4 -1 reviewed p.I21790T 0.992 56 0% 64 43.8% - - - - - NULL TTN 7273 genome.wustl.edu 37 2 179444953 179444953 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000356127 -1 known p.T19784N 1.000 97 0% 140 57.9% - - possibly_damaging(0.847) - - NULL TTN 7273 genome.wustl.edu 37 2 179612283 179612283 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133379.3 -1 reviewed p.V4948 0.548 140 0% 206 12.6% - - - - - NULL TTN 7273 genome.wustl.edu 37 2 179639077 179639077 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133379.3 -1 reviewed p.E2305G 1.000 183 0% 226 36.3% - - benign(0.005) - - HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726 TTN 7273 genome.wustl.edu 37 2 179640624 179640624 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133379.3 -1 reviewed p.K1989 0.049 144 0% 258 45.7% - - - - - NULL UBE2E3 10477 genome.wustl.edu 37 2 181925492 181925492 + Nonsense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006357.2 +1 reviewed p.S160* 1.000 73 0% 134 41% - - - - - HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like DNAJC10 54431 genome.wustl.edu 37 2 183641852 183641852 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018981.1 +1 provisional p.E792G 1.000 64 0% 94 27.7% - - possibly_damaging(0.868) deleterious(0) deleterious(0.782) NULL GLS 2744 genome.wustl.edu 37 2 191775025 191775025 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014905.3 +1 validated p.I339S 1.000 28 0% 48 41.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase STAT1 6772 genome.wustl.edu 37 2 191844500 191844500 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007315.3 -1 reviewed p.D575E 1.000 55 0% 86 36% - - probably_damaging(1) tolerated(0.3) deleterious(0.528) HMMPfam_SH2,superfamily_SH2 domain SGOL2 151246 genome.wustl.edu 37 2 201438120 201438120 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152524.5 +1 validated p.I1017 0.026 240 0% 252 44.8% - - - - - NULL PLEKHM3 389072 genome.wustl.edu 37 2 208811148 208811148 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000447645 -1 known p.*297R 0.846 254 0% 256 36.7% - - - - - NULL KANSL1L 151050 genome.wustl.edu 37 2 210908786 210908786 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152519.2 -1 validated p.M600L 0.967 141 0% 197 37.6% - - benign(0) tolerated(0.54) neutral(0.007) NULL FN1 2335 genome.wustl.edu 37 2 216271057 216271057 + Missense_Mutation SNP C C G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_212482.1 -1 reviewed p.V964L 0.006 77 0% 74 50% - - benign(0.06) tolerated(0.4) neutral(0.020) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CRYBA2 1412 genome.wustl.edu 37 2 219854993 219854993 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005209.1 -1 reviewed p.I192T 1.000 37 0% 32 56.2% - - probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like DES 1674 genome.wustl.edu 37 2 220286159 220286159 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001927.3 +1 reviewed p.I374T 1.000 48 2.1% 42 35.7% - - possibly_damaging(0.838) deleterious(0.02) deleterious(0.703) HMMPfam_Filament GMPPA 29926 genome.wustl.edu 37 2 220369948 220369948 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013335.2 +1 reviewed e7-2 1.000 48 0% 34 32.4% - - - - - - COL4A4 1286 genome.wustl.edu 37 2 227907842 227907842 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000092.4 -1 reviewed p.S1116 0.996 87 0% 93 48.4% - - - - - HMMPfam_Collagen COL4A3 1285 genome.wustl.edu 37 2 228147183 228147183 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000091.3 +1 reviewed p.Q864R 0.065 71 0% 105 42.9% - - unknown(0) tolerated(0.56) - NULL SP100 6672 genome.wustl.edu 37 2 231406620 231406620 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080391.1 +1 validated p.S806F 0.000 75 1.3% 96 16.7% - - benign(0.019) tolerated(0.24) neutral(0.038) HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain C2orf57 165100 genome.wustl.edu 37 2 232458014 232458014 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152614.2 +1 validated p.S118G 0.000 142 0% 135 37% - - benign(0.063) deleterious(0) neutral(0.449) NULL EIF4E2 9470 genome.wustl.edu 37 2 233431537 233431537 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004846.2 +1 validated e5-2 0.999 90 0% 81 45.7% - - - - - - COL6A3 1293 genome.wustl.edu 37 2 238296286 238296286 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004369.3 -1 reviewed p.P417 0.952 39 0% 38 42.1% - - - - - superfamily_vWA-like RBM44 375316 genome.wustl.edu 37 2 238742986 238742986 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080504.2 +1 validated p.S1034Y 0.256 7 0.000 20 0.200 - - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL PER2 8864 genome.wustl.edu 37 2 239159208 239159208 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022817.2 -1 reviewed p.Y1151H 0.996 21 0% 15 33.3% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL OR6B3 150681 genome.wustl.edu 37 2 240984995 240984995 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173351.1 -1 provisional p.S165 0.000 86 0% 64 40.6% - - - - - HMMPfam_7tm_1,superfamily_SSF81321 GPR35 2859 genome.wustl.edu 37 2 241569709 241569709 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005301.2 +1 provisional p.R114C 1.000 7 0.000 11 0.455 - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 PPP1R7 5510 genome.wustl.edu 37 2 242099901 242099901 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002712.1 +1 provisional p.R197C 1.000 52 0% 51 39.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00365,superfamily_L domain-like FARP2 9855 genome.wustl.edu 37 2 242381120 242381120 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000413432 +1 known p.T207 0.420 13 0.000 9 0.444 - - - - - NULL CHL1 10752 genome.wustl.edu 37 3 391175 391175 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006614.2 +1 reviewed p.A328T 1.000 174 0% 230 43.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin CRBN 51185 genome.wustl.edu 37 3 3192700 3192700 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016302.3 -1 reviewed p.I393T 0.552 58 0% 81 46.9% - - benign(0) tolerated(0.6) neutral(0.004) NULL OGG1 4968 genome.wustl.edu 37 3 9798808 9798808 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002542.5 +1 reviewed p.K338E 0.029 193 0% 203 34.5% - - benign(0.002) tolerated(0.42) neutral(0.014) NULL SLC6A6 6533 genome.wustl.edu 37 3 14513736 14513736 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001134367.1 +1 validated p.Y374H 1.000 27 0% 31 19.4% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_SNF GRIP2 80852 genome.wustl.edu 37 3 14561919 14561919 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080423.1 -1 provisional p.K377E 1.000 27 0% 37 45.9% - - - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like C3orf20 84077 genome.wustl.edu 37 3 14768504 14768504 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032137.4 +1 validated p.F555L 1.000 91 1.1% 111 33.3% - - benign(0.095) deleterious(0) neutral(0.452) NULL CAPN7 23473 genome.wustl.edu 37 3 15292436 15292436 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014296.2 +1 reviewed e20-2 0.998 170 0% 247 33.6% - - - - - - SATB1 6304 genome.wustl.edu 37 3 18390845 18390845 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001131010.1 -1 validated p.H703 0.015 196 0% 269 48% - - - - - HMMSmart_SM00389,superfamily_Homeodomain-like RBMS3 27303 genome.wustl.edu 37 3 29628650 29628650 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001003793.2 +1 reviewed p.A118V 1.000 83 0% 95 37.9% - - probably_damaging(0.968) deleterious(0) deleterious(0.855) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD OSBPL10 114884 genome.wustl.edu 37 3 31774787 31774787 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017784.4 -1 reviewed p.S353T 0.881 123 0% 167 46.7% - - benign(0.001) tolerated(0.45) neutral(0.012) NULL OSBPL10 114884 genome.wustl.edu 37 3 31789495 31789495 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017784.4 -1 reviewed p.A283T 0.998 179 0% 194 53.6% - - probably_damaging(1) tolerated(0.33) deleterious(0.524) NULL UBP1 7342 genome.wustl.edu 37 3 33434837 33434837 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001128161.1 -1 validated p.G500 0.936 96 0% 105 31.4% - - - - - NULL MLH1 4292 genome.wustl.edu 37 3 37035049 37035049 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000249.3 +1 reviewed p.V4A 1.000 24 0% 32 40.6% - - benign(0.039) tolerated(0.2) neutral(0.051) NULL GOLGA4 2803 genome.wustl.edu 37 3 37366388 37366388 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002078.4 +1 reviewed p.L1004P 0.925 217 0% 291 35.4% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL OXSR1 9943 genome.wustl.edu 37 3 38263171 38263171 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005109.2 +1 reviewed p.M198T 1.000 153 0.7% 304 33.9% - - probably_damaging(0.989) deleterious(0) deleterious(0.884) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase SCN5A 6331 genome.wustl.edu 37 3 38591892 38591892 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099404.1 -1 reviewed p.R1991W 0.000 52 0% 68 51.5% - - possibly_damaging(0.91) deleterious(0.02) deleterious(0.746) NULL SCN11A 11280 genome.wustl.edu 37 3 38913712 38913712 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014139.2 -1 validated p.R1156H 0.608 224 0% 384 41.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ZNF621 285268 genome.wustl.edu 37 3 40573648 40573648 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098414.1 +1 validated p.R129 0.001 196 0% 171 43.9% - - - - - NULL CTNNB1 1499 genome.wustl.edu 37 3 41278187 41278187 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098209.1 +1 reviewed p.M688T 1.000 216 0.5% 284 41.9% - - benign(0) tolerated(0.47) neutral(0.011) NULL VIPR1 7433 genome.wustl.edu 37 3 42569606 42569606 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004624.3 +1 validated p.S209 0.000 36 0% 37 48.6% - - - - - HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like LZTFL1 54585 genome.wustl.edu 37 3 45872571 45872571 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020347.2 -1 validated p.E172D 0.259 76 0% 95 38.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SMARCC1 6599 genome.wustl.edu 37 3 47663719 47663719 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003074.3 -1 validated p.I920S 1.000 210 0% 278 35.3% - - probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL ATRIP 84126 genome.wustl.edu 37 3 48500825 48500825 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_130384.1 +1 reviewed p.D299 0.344 48 0% 47 48.9% - - - - - NULL COL7A1 1294 genome.wustl.edu 37 3 48625747 48625747 + Missense_Mutation SNP G G A rs2854389 TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000094.3 -1 reviewed p.A893V 0.000 8 0.000 10 0.400 - - unknown(0) tolerated(0.57) - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SLC25A20 788 genome.wustl.edu 37 3 48929457 48929457 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000387.4 -1 reviewed p.Y52H 1.000 164 0% 143 36.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Mitoch_carrier,HMMPfam_Mito_carr QRICH1 54870 genome.wustl.edu 37 3 49094887 49094887 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017730.2 -1 validated p.K249R 1.000 56 0% 53 43.4% - - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL QARS 5859 genome.wustl.edu 37 3 49136579 49136579 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005051.1 -1 reviewed p.S574 0.904 104 0% 106 34.9% - - - - - superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c_C USP19 10869 genome.wustl.edu 37 3 49148292 49148292 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006677.1 -1 provisional p.C1081R 1.000 56 0% 50 32% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UCH,superfamily_Cysteine proteinases USP19 10869 genome.wustl.edu 37 3 49153548 49153548 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006677.1 -1 provisional p.R367H 1.000 29 0% 19 57.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_HSP20-like chaperones,HMMPfam_DUF1872 LAMB2 3913 genome.wustl.edu 37 3 49169735 49169735 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002292.3 -1 reviewed p.Q118R 1.000 43 0% 28 42.9% - - benign(0.007) tolerated(0.41) neutral(0.015) HMMPfam_Laminin_N,HMMSmart_LamNT CCDC71 64925 genome.wustl.edu 37 3 49200595 49200595 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022903.3 -1 validated p.V349 0.000 50 0% 31 38.7% - - - - - NULL ENSG00000236980 0 genome.wustl.edu 37 3 49227456 49227456 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000432035 -1 known NULL 0.997 98 1% 99 34.3% - - - - - - TCTA 6988 genome.wustl.edu 37 3 49450062 49450062 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022171.2 +1 validated p.Y68C 1.000 19 0% 32 25% - - probably_damaging(0.97) deleterious(0) deleterious(0.857) NULL RBM6 10180 genome.wustl.edu 37 3 50036897 50036897 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005777.2 +1 validated p.V503A 1.000 155 0% 164 38.4% - - possibly_damaging(0.867) deleterious(0) deleterious(0.781) HMMSmart_RRM,superfamily_SSF54928 RBM6 10180 genome.wustl.edu 37 3 50098913 50098913 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005777.2 +1 validated p.I791R 1.000 158 0% 223 43.9% - - probably_damaging(0.998) tolerated(0.94) deleterious(0.474) NULL RBM5 10181 genome.wustl.edu 37 3 50129619 50129619 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005778.1 +1 provisional p.Y54C 1.000 33 0% 39 20.5% - - possibly_damaging(0.797) tolerated(0.13) deleterious(0.552) NULL RBM5 10181 genome.wustl.edu 37 3 50148203 50148203 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005778.1 +1 provisional p.Q485 1.000 40 0% 60 33.3% - - - - - NULL NPRL2 10641 genome.wustl.edu 37 3 50385996 50385997 + Splice_Site INS - - GA novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006545.4 -1 validated e7-2 1.000:0.829 - - - - - - - - - - DNAH1 25981 genome.wustl.edu 37 3 52398968 52398968 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015512.4 +1 validated p.T1817 0.001 49 0% 39 53.8% - - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases STAB1 23166 genome.wustl.edu 37 3 52557049 52557049 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015136.2 +1 reviewed p.C2307R 0.992 5 0.000 7 0.571 - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_FAS1 domain,PatternScan_EGF_2 PBRM1 55193 genome.wustl.edu 37 3 52643435 52643435 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018165.4 -1 validated p.T789A 1.000 141 0% 159 42.1% - - possibly_damaging(0.744) deleterious(0.04) deleterious(0.622) HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain PBRM1 55193 genome.wustl.edu 37 3 52713669 52713669 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018165.4 -1 validated p.D20G 1.000 54 0% 64 29.7% - - possibly_damaging(0.832) deleterious(0.01) deleterious(0.723) superfamily_Bromodomain CACNA1D 776 genome.wustl.edu 37 3 53774344 53774344 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000720.2 +1 validated p.F950S 1.000 65 0% 79 30.4% - - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Ion_trans,superfamily_SSF81324 FAM208A 23272 genome.wustl.edu 37 3 56662571 56662571 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001112736.1 -1 validated p.D1273 1.000 51 0% 44 40.9% - - - - - NULL PRICKLE2 166336 genome.wustl.edu 37 3 64085229 64085229 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198859.3 -1 validated p.D678V 0.153 44 0% 42 42.9% - - benign(0.132) deleterious(0.03) neutral(0.376) NULL PROS1 5627 genome.wustl.edu 37 3 93593227 93593227 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000313.3 -1 reviewed p.P631 0.976 61 0% 64 46.9% - - - - - HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 STX19 415117 genome.wustl.edu 37 3 93733612 93733612 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001001850.1 -1 provisional p.R168C 1.000 204 0% 245 52.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_t-snare EPHA6 285220 genome.wustl.edu 37 3 96962907 96962907 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080448.2 +1 provisional p.V461A 0.999 68 0% 75 44% - - benign(0.086) deleterious(0.04) neutral(0.355) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III SENP7 57337 genome.wustl.edu 37 3 101056353 101056353 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020654.3 -1 validated p.S827L 1.000 58 0% 105 50.5% - - probably_damaging(0.994) deleterious(0.02) deleterious(0.835) HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases ALCAM 214 genome.wustl.edu 37 3 105243160 105243160 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001627.2 +1 validated p.I68V 1.000 88 0% 109 34.9% - - benign(0.183) tolerated(0.16) neutral(0.076) HMMSmart_SM00406,HMMSmart_SM00409,superfamily_Immunoglobulin KIAA1524 57650 genome.wustl.edu 37 3 108288347 108288347 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020890.2 -1 validated p.H334 0.002 31 0% 72 36.1% - - - - - superfamily_ARM repeat TRAT1 50852 genome.wustl.edu 37 3 108565928 108565928 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016388.2 +1 validated p.Y56H 0.166 52 0% 51 23.5% - - possibly_damaging(0.926) tolerated(0.38) neutral(0.392) NULL ABHD10 55347 genome.wustl.edu 37 3 111705216 111705216 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018394.2 +1 validated p.G144 0.994 112 0% 124 25.8% - - - - - HMMPfam_Abhydrolase_1,superfamily_SSF53474 ZDHHC23 254887 genome.wustl.edu 37 3 113677366 113677366 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173570.3 +1 validated p.C399 0.701 22 0% 35 45.7% - - - - - NULL QTRTD1 79691 genome.wustl.edu 37 3 113804641 113804641 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024638.2 +1 provisional p.M380V 1.000 168 0% 210 51.9% - - probably_damaging(0.981) deleterious(0.02) deleterious(0.808) HMMPfam_TGT,superfamily_tRNA_ribo_trans DRD3 1814 genome.wustl.edu 37 3 113858457 113858457 + Frame_Shift_Del DEL C C - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000796.3 -1 reviewed p.V205fs 0.999 - - - - - - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like C3orf15 89876 genome.wustl.edu 37 3 119456277 119456277 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033364.3 +1 validated p.N470S 0.085 148 0% 166 45.2% - - benign(0.03) tolerated(0.18) neutral(0.058) NULL GOLGB1 2804 genome.wustl.edu 37 3 121388078 121388078 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004487.3 -1 validated p.Q3096R 0.660 122 0% 169 32% - - benign(0.012) deleterious(0.01) neutral(0.406) NULL DTX3L 151636 genome.wustl.edu 37 3 122287407 122287407 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138287.3 +1 validated p.T157 0.000 105 0% 101 44.6% - - - - - NULL CCDC14 64770 genome.wustl.edu 37 3 123649993 123649993 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000479903 -1 known p.Y208C 0.882 99 0% 171 33.3% - - - - - NULL KALRN 8997 genome.wustl.edu 37 3 124053178 124053178 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001024660.3 +1 reviewed p.S493P 1.000 83 0% 115 34.8% - - probably_damaging(0.996) tolerated(0.28) deleterious(0.493) HMMSmart_SM00150,superfamily_Spectrin repeat SLC12A8 84561 genome.wustl.edu 37 3 124906100 124906100 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024628.5 -1 validated p.L124P 1.000 23 0% 24 50% - - probably_damaging(0.975) deleterious(0) deleterious(0.861) HMMPfam_AA_permease OSBPL11 114885 genome.wustl.edu 37 3 125266399 125266399 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022776.4 -1 reviewed p.T564 0.271 94 0% 109 37.6% - - - - - HMMPfam_Oxysterol_BP COPG1 22820 genome.wustl.edu 37 3 128973581 128973581 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016128.3 +1 validated p.T132A 1.000 42 0% 31 22.6% - - probably_damaging(0.97) tolerated(0.12) deleterious(0.673) HMMPfam_Adaptin_N,superfamily_ARM repeat TOPBP1 11073 genome.wustl.edu 37 3 133371475 133371475 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007027.3 -1 reviewed e7-2 0.999 102 0% 102 35.3% - - - - - - TOPBP1 11073 genome.wustl.edu 37 3 133376752 133376752 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007027.3 -1 reviewed p.I85V 0.823 39 0% 57 49.1% - - benign(0.006) tolerated(0.41) neutral(0.015) NULL MSL2 55167 genome.wustl.edu 37 3 135871056 135871056 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018133.3 -1 validated p.T223A 0.999 108 0% 110 34.5% - - benign(0.247) deleterious(0) deleterious(0.470) NULL PCCB 5096 genome.wustl.edu 37 3 136035898 136035898 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000532.4 +1 reviewed p.V361A 1.000 119 0% 209 34% - - benign(0.001) tolerated(0.08) neutral(0.300) HMMPfam_Carboxyl_trans,superfamily_SSF52096 STAG1 10274 genome.wustl.edu 37 3 136087948 136087948 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005862.2 -1 reviewed e23+2 1.000 77 0% 84 33.3% - - - - - - STAG1 10274 genome.wustl.edu 37 3 136141655 136141655 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005862.2 -1 reviewed p.P596 1.000 66 0% 100 54% - - - - - superfamily_ARM-type_fold DBR1 51163 genome.wustl.edu 37 3 137893551 137893551 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016216.2 -1 validated p.G29 0.073 13 0% 12 41.7% - - - - - HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases ATR 545 genome.wustl.edu 37 3 142178126 142178126 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001184.3 -1 reviewed p.R2431K 0.998 98 0% 139 49.6% - - benign(0.124) tolerated(0.49) neutral(0.021) HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like) ATR 545 genome.wustl.edu 37 3 142272178 142272178 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001184.3 -1 reviewed p.K899T 1.000 108 0% 143 49.7% - - possibly_damaging(0.737) deleterious(0.02) deleterious(0.653) superfamily_ARM repeat PLSCR5 389158 genome.wustl.edu 37 3 146307469 146307470 + Frame_Shift_Ins INS - - T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001085420.1 -1 validated p.A249fs 1.000:1.000 - - - - - - - - - HMMPfam_Scramblase PFN2 5217 genome.wustl.edu 37 3 149686143 149686143 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002628.4 -1 reviewed e2+2 1.000 102 0% 194 32.5% - - - - - - FAM194A 131831 genome.wustl.edu 37 3 150421525 150421525 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152394.3 -1 validated p.E54V 0.000 72 1.4% 50 34% - - unknown(0) tolerated(0.16) - NULL AADACL2 344752 genome.wustl.edu 37 3 151463353 151463353 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_207365.3 +1 validated p.A163V 0.367 175 0% 419 43.7% - - benign(0.005) tolerated(0.28) neutral(0.032) HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases SI 6476 genome.wustl.edu 37 3 164700035 164700035 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001041.3 -1 reviewed p.N1804S 0.000 67 0% 80 38.8% - - benign(0) tolerated(0.62) neutral(0.004) NULL FNDC3B 64778 genome.wustl.edu 37 3 171830319 171830319 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001135095.1 +1 validated p.P17L 0.998 146 0% 203 27.1% - - possibly_damaging(0.556) deleterious(0.01) deleterious(0.595) NULL NCEH1 57552 genome.wustl.edu 37 3 172351434 172351434 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020792.4 -1 validated p.D385G 1.000 162 0% 136 34.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases PIK3CA 5290 genome.wustl.edu 37 3 178947161 178947161 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006218.2 +1 reviewed p.L866W 1.000 71 0% 82 47.6% - - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like PIK3CA 5290 genome.wustl.edu 37 3 178952074 178952074 + Missense_Mutation SNP G G A rs121913283 TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006218.2 +1 reviewed p.M1043I 1.000 118 0% 166 47.6% - - benign(0.256) deleterious(0.02) neutral(0.410) HMMSmart_PI3Kc,superfamily_Kinase_like MFN1 55669 genome.wustl.edu 37 3 179093118 179093118 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033540.2 +1 reviewed p.A362 0.964 61 0% 94 27.7% - - - - - NULL CCDC39 339829 genome.wustl.edu 37 3 180365007 180365007 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181426.1 -1 validated p.R463W 0.998 44 0% 69 47.8% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ABCF3 55324 genome.wustl.edu 37 3 183905932 183905932 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018358.2 +1 validated p.V191 0.769 138 0% 106 32.1% - - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases EPHB3 2049 genome.wustl.edu 37 3 184290537 184290537 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004443.3 +1 reviewed p.S143 0.034 11 0% 17 47.1% - - - - - HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like VPS8 23355 genome.wustl.edu 37 3 184584687 184584687 + Nonsense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001009921.2 +1 validated p.C473* 1.000 128 0% 218 39.9% - - - - - NULL EHHADH 1962 genome.wustl.edu 37 3 184910766 184910766 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001966.3 -1 reviewed p.G474C 1.000 150 0% 180 43.3% - - unknown(0) deleterious(0) - HMMPfam_3HCDH_N,superfamily_NAD(P)-bd ATP13A3 79572 genome.wustl.edu 37 3 194169199 194169199 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024524.3 -1 validated p.I379M 0.910 240 0% 318 40.3% - - benign(0.019) deleterious(0) neutral(0.446) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M LSG1 55341 genome.wustl.edu 37 3 194366921 194366921 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018385.2 -1 reviewed p.A532V 1.000 79 0% 107 43% - - probably_damaging(0.985) deleterious(0.03) deleterious(0.796) NULL MFI2 4241 genome.wustl.edu 37 3 196753609 196753609 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005929.4 -1 reviewed p.T76S 1.000 22 0% 26 34.6% - - benign(0.01) tolerated(0.11) neutral(0.272) HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II LRCH3 84859 genome.wustl.edu 37 3 197598258 197598258 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000428136 +1 known p.C63R 0.898 181 0% 192 33.3% - - - - - HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain POLN 353497 genome.wustl.edu 37 4 2097640 2097640 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181808.2 -1 validated p.Q668R 0.000 56 0% 61 24.6% - - benign(0) tolerated(0.64) neutral(0.003) HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases EVC2 132884 genome.wustl.edu 37 4 5586506 5586506 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_147127.4 -1 reviewed p.L967 0.000 114 0% 161 36% - - - - - NULL SORCS2 57537 genome.wustl.edu 37 4 7533312 7533312 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020777.2 +1 reviewed p.T202A 1.000 15 0% 12 41.7% - - benign(0.144) tolerated(0.29) neutral(0.042) HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase ZNF518B 85460 genome.wustl.edu 37 4 10446094 10446094 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_053042.2 -1 validated p.N620S 0.000 150 0% 210 42.9% - - benign(0.01) deleterious(0.03) neutral(0.365) NULL ZNF518B 85460 genome.wustl.edu 37 4 10446304 10446304 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_053042.2 -1 validated p.E550A 0.000 131 0% 162 36.4% - - benign(0.188) deleterious(0.03) neutral(0.382) NULL CC2D2A 57545 genome.wustl.edu 37 4 15517620 15517620 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080522.2 +1 reviewed p.Q337R 1.000 16 0% 24 45.8% - - benign(0.097) deleterious(0.04) neutral(0.356) NULL CCDC149 91050 genome.wustl.edu 37 4 24854703 24854703 + Silent SNP G G A rs189184855 by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001130726.1 -1 validated p.G121 0.075 156 0% 199 49.2% - - - - - HMMPfam_DUF2353 TBC1D19 55296 genome.wustl.edu 37 4 26741511 26741511 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018317.2 +1 validated p.H381 1.000 166 0% 240 35.8% - - - - - HMMSmart_SM00164 TMEM156 80008 genome.wustl.edu 37 4 39033893 39033893 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024943.1 -1 provisional p.V14A 0.316 11 0% 11 45.5% - - benign(0.009) tolerated(0.06) neutral(0.323) NULL RFC1 5981 genome.wustl.edu 37 4 39314481 39314481 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002913.3 -1 reviewed p.E425G 1.000 416 0% 526 44.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT N4BP2 55728 genome.wustl.edu 37 4 40122672 40122672 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018177.3 +1 reviewed p.N981D 0.000 107 0% 117 35% - - benign(0.002) deleterious(0.01) neutral(0.406) NULL CHIC2 26511 genome.wustl.edu 37 4 54880228 54880228 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012110.2 -1 reviewed e4+2 1.000 118 0% 150 36.7% - - - - - - PPAT 5471 genome.wustl.edu 37 4 57267604 57267604 + Silent SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002703.3 -1 reviewed p.R260 1.000 47 0% 40 12.5% - - - - - superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) MUC7 4589 genome.wustl.edu 37 4 71346834 71346834 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001145006.1 +1 reviewed p.T125A 0.003 308 0% 452 35.4% - - unknown(0) tolerated(0.23) - NULL SLC4A4 8671 genome.wustl.edu 37 4 72363261 72363261 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001134742.1 +1 reviewed p.E673G 1.000 78 0% 131 49.6% - - benign(0) tolerated(0.14) neutral(0.249) HMMPfam_HCO3_cotransp ANKRD17 26057 genome.wustl.edu 37 4 73963911 73963911 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032217.3 -1 reviewed p.K1634E 0.993 310 0% 338 38.8% - - benign(0.002) tolerated(0.79) neutral(0.001) NULL ANXA3 306 genome.wustl.edu 37 4 79525492 79525492 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005139.2 +1 reviewed p.L284P 1.000 121 0% 166 15.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335 SLC10A6 345274 genome.wustl.edu 37 4 87744922 87744922 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_197965.2 -1 validated p.G351 0.000 102 1% 108 25% - - - - - NULL HSD17B11 51170 genome.wustl.edu 37 4 88261690 88261690 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016245.3 -1 validated p.K255R 0.989 115 0% 149 40.9% - - benign(0.015) tolerated(0.58) neutral(0.005) superfamily_NAD(P)-binding Rossmann-fold domains DSPP 1834 genome.wustl.edu 37 4 88534435 88534435 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014208.3 +1 reviewed p.H366R 0.000 100 0% 138 33.3% - - possibly_damaging(0.448) - - NULL HERC5 51191 genome.wustl.edu 37 4 89400504 89400504 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016323.2 +1 reviewed p.E528A 0.943 58 0% 63 34.9% - - benign(0.429) tolerated(0.13) neutral(0.392) NULL SLC9B1 150159 genome.wustl.edu 37 4 103806392 103806392 + Nonstop_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001100874.1 -1 reviewed p.*476Q 0.021 51 0% 85 32.9% - - - - - NULL NPNT 255743 genome.wustl.edu 37 4 106863559 106863559 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001033047.2 +1 validated p.I287V 1.000 176 0% 237 34.2% - - possibly_damaging(0.768) deleterious(0) deleterious(0.730) NULL CAMK2D 817 genome.wustl.edu 37 4 114452441 114452441 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001221.3 -1 reviewed p.P178S 1.000 61 0% 86 36% - - benign(0.242) deleterious(0) deleterious(0.469) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase UGT8 7368 genome.wustl.edu 37 4 115586883 115586883 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001128174.1 +1 validated p.I338K 1.000 75 0% 94 60.6% - - benign(0.326) deleterious(0) deleterious(0.546) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase FABP2 2169 genome.wustl.edu 37 4 120241914 120241917 + Frame_Shift_Del DEL TGAC TGAC - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 TGAC TGAC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000134.3 -1 reviewed p.V50fs 1.000:1.000:1.000:0.855 - - - - - - - - - HMMPfam_Lipocalin,superfamily_Lipocalins PRDM5 11107 genome.wustl.edu 37 4 121631520 121631520 + Nonsense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018699.2 -1 reviewed p.R558* 1.000 89 0% 110 51.8% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers KIAA1109 84162 genome.wustl.edu 37 4 123130473 123130473 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015312.3 +1 reviewed p.R638C 1.000 44 0% 67 44.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAT4 79633 genome.wustl.edu 37 4 126367493 126367493 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024582.4 +1 validated p.S2413 0.987 101 0% 126 48.4% - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT4 79633 genome.wustl.edu 37 4 126372411 126372411 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024582.4 +1 validated p.S3414G 1.000 157 0% 247 10.1% - - probably_damaging(0.959) tolerated(0.1) deleterious(0.689) HMMPfam_Cadherin,superfamily_Cadherin-like LARP1B 55132 genome.wustl.edu 37 4 129120621 129120621 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018078.2 +1 reviewed p.G677 0.004 90 0% 96 36.5% - - - - - NULL C4orf49 84709 genome.wustl.edu 37 4 140201262 140201262 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032623.3 -1 validated p.A17 0.998 7 0.000 12 0.667 - - - - - NULL INPP4B 8821 genome.wustl.edu 37 4 143159161 143159161 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001101669.1 -1 reviewed p.L231S 1.000 46 0% 75 33.3% - - benign(0.174) deleterious(0) neutral(0.461) NULL USP38 84640 genome.wustl.edu 37 4 144106734 144106734 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032557.5 +1 validated p.L44R 1.000 47 0% 34 52.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TLR2 7097 genome.wustl.edu 37 4 154626227 154626227 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003264.3 +1 reviewed p.R723H 0.983 144 0% 210 37.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR NEK1 4750 genome.wustl.edu 37 4 170477248 170477248 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012224.1 -1 validated e15-2 1.000 71 0% 76 46.1% - - - - - - GALNT7 51809 genome.wustl.edu 37 4 174216618 174216618 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017423.2 +1 reviewed p.R276G 1.000 117 0% 168 36.9% - - probably_damaging(0.956) deleterious(0.02) deleterious(0.782) HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases HMGB2 3148 genome.wustl.edu 37 4 174253970 174253970 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001130688.1 -1 reviewed e3+2 0.986 123 0% 146 31.5% - - - - - - WWC2 80014 genome.wustl.edu 37 4 184166570 184166570 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024949.5 +1 validated p.I202F 1.000 48 0% 55 36.4% - - unknown(0) - - NULL CCDC111 201973 genome.wustl.edu 37 4 185593611 185593611 + Missense_Mutation SNP C C G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152683.2 +1 validated p.L281V 0.998 57 0% 66 62.1% - - benign(0.036) tolerated(0.47) neutral(0.013) NULL CCDC110 256309 genome.wustl.edu 37 4 186379466 186379466 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152775.3 -1 validated p.T759S 0.002 59 0% 86 32.6% - - possibly_damaging(0.859) tolerated(0.39) neutral(0.348) NULL F11 2160 genome.wustl.edu 37 4 187206956 187206956 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000128.3 +1 reviewed p.V490A 0.996 118 0% 136 12.5% - - benign(0.08) tolerated(0.13) neutral(0.258) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases FRG1 2483 genome.wustl.edu 37 4 190874265 190874265 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004477.2 +1 reviewed p.K101R 1.000 61 0% 118 11.9% - - benign(0.012) tolerated(0.61) neutral(0.005) superfamily_Actin-crosslinking proteins,HMMPfam_FRG1 ROPN1L 83853 genome.wustl.edu 37 5 10450183 10450183 + Missense_Mutation SNP G G C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_031916.3 +1 reviewed p.K125N 1.000 118 0% 147 14.3% - - benign(0.002) tolerated(0.18) neutral(0.056) NULL CTNND2 1501 genome.wustl.edu 37 5 10981912 10981912 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001332.2 -1 validated p.A1130 0.066 215 0% 260 34.2% - - - - - NULL DNAH5 1767 genome.wustl.edu 37 5 13751251 13751251 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001369.2 -1 reviewed p.F3716S 1.000 108 0% 168 44% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM105B 90268 genome.wustl.edu 37 5 14678860 14678860 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138348.4 +1 validated p.T100 0.116 54 0% 74 48.6% - - - - - NULL FBXL7 23194 genome.wustl.edu 37 5 15616143 15616143 + Frame_Shift_Del DEL C C - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012304.3 +1 reviewed p.T30fs 1.000 - - - - - - - - - NULL CDH12 1010 genome.wustl.edu 37 5 21765206 21765206 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004061.3 -1 reviewed p.N466D 1.000 74 0% 131 42.7% - - possibly_damaging(0.664) tolerated(0.07) deleterious(0.554) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DROSHA 29102 genome.wustl.edu 37 5 31511249 31511249 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013235.4 -1 validated p.R442H 0.998 193 0.5% 233 48.1% - - probably_damaging(0.994) tolerated(0.21) deleterious(0.496) NULL ZFR 51663 genome.wustl.edu 37 5 32415108 32415108 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016107.3 -1 validated p.S250 1.000 76 0% 93 32.3% - - - - - NULL NPR3 4883 genome.wustl.edu 37 5 32712508 32712508 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000908.2 +1 validated p.L209P 1.000 66 0% 48 16.7% - - benign(0) tolerated(0.22) neutral(0.042) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I IL7R 3575 genome.wustl.edu 37 5 35874557 35874557 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002185.2 +1 reviewed p.M238T 0.001 99 0% 134 21.6% - - benign(0) tolerated(0.44) neutral(0.013) NULL SLC1A3 6507 genome.wustl.edu 37 5 36629691 36629691 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004172.4 +1 reviewed e2+2 1.000 290 0% 442 34.8% - - - - - - NIPBL 25836 genome.wustl.edu 37 5 37022456 37022456 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133433.3 +1 reviewed p.A1846 0.995 18 0% 29 34.5% - - - - - superfamily_ARM repeat C5orf42 65250 genome.wustl.edu 37 5 37157443 37157443 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000388739 -1 known p.P1577 0.000 30 0% 43 46.5% - - - - - NULL WDR70 55100 genome.wustl.edu 37 5 37480045 37480045 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018034.2 +1 provisional p.C266R 1.000 230 0% 202 44.6% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_WD40_like PTGER4 5734 genome.wustl.edu 37 5 40681099 40681099 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000958.2 +1 reviewed p.S2P 0.711 57 0% 52 48.1% - - benign(0.107) deleterious(0) neutral(0.453) NULL C6 729 genome.wustl.edu 37 5 41176786 41176786 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000065.2 -1 reviewed p.M320T 1.000 141 0% 155 40.6% - - benign(0.007) deleterious(0) neutral(0.445) HMMPfam_MACPF,HMMSmart_MACPF HMGCS1 3157 genome.wustl.edu 37 5 43299013 43299013 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098272.1 -1 validated p.I19F 1.000 119 0% 158 33.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like LOC728931 728931 genome.wustl.edu 37 5 43588318 43588318 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_002342502.1 -1 model p.A202V 0.999 9 0.000 8 0.500 - - - - - HMMPfam_SAM_decarbox HCN1 348980 genome.wustl.edu 37 5 45303860 45303860 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021072.2 -1 validated p.M487V 1.000 110 0% 161 39.1% - - benign(0.006) tolerated(1) - HMMSmart_cNMP,superfamily_cNMP_binding DEPDC1B 55789 genome.wustl.edu 37 5 59982913 59982913 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018369.2 -1 validated p.G64C 1.000 155 0% 224 34.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) "HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain" C5orf44 80006 genome.wustl.edu 37 5 64960104 64960104 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001093755.1 +1 validated p.N348D 0.214 128 0% 160 33.8% - - benign(0) tolerated(0.63) neutral(0.004) NULL CCNB1 891 genome.wustl.edu 37 5 68463091 68463091 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_031966.2 +1 reviewed p.M1T 1.000 56 0% 53 41.5% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL GTF2H2D 730394 genome.wustl.edu 37 5 68868311 68868311 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001042490.3 +1 provisional p.V135A 1.000 158 0% 218 19.3% - - benign(0.001) tolerated(0.58) neutral(0.005) HMMSmart_SM00327,HMMPfam_Ssl1,superfamily_vWA-like MAP1B 4131 genome.wustl.edu 37 5 71490799 71490799 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005909.3 +1 validated p.A539 0.868 186 0% 191 45% - - - - - NULL MAP1B 4131 genome.wustl.edu 37 5 71495599 71495599 + Silent SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005909.3 +1 validated p.G2139 0.692 206 0% 242 50% - - - - - NULL TMEM171 134285 genome.wustl.edu 37 5 72419385 72419385 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173490.6 +1 validated p.A62V 0.000 33 0% 37 54.1% - - benign(0) tolerated(0.33) neutral(0.024) NULL POLK 51426 genome.wustl.edu 37 5 74865169 74865169 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016218.2 +1 validated p.D87G 1.000 79 0% 94 28.7% - - possibly_damaging(0.932) deleterious(0.01) deleterious(0.784) superfamily_DNA/RNA polymerases F2RL1 2150 genome.wustl.edu 37 5 76128808 76128808 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005242.4 +1 validated p.I126V 0.847 260 0% 288 32.6% - - benign(0.001) tolerated(0.68) neutral(0.002) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CMYA5 202333 genome.wustl.edu 37 5 79034841 79034841 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153610.3 +1 validated p.Q3418R 1.000 371 0% 455 33.8% - - possibly_damaging(0.763) deleterious(0) deleterious(0.728) NULL VCAN 1462 genome.wustl.edu 37 5 82816028 82816028 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004385.4 +1 reviewed p.F635L 0.000 243 0% 267 44.6% - - benign(0.031) tolerated(0.44) neutral(0.014) NULL GPR98 84059 genome.wustl.edu 37 5 89910697 89910697 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032119.3 +1 reviewed p.L23P 0.940 50 0% 66 45.5% - - benign(0.165) tolerated(0.09) neutral(0.311) HMMSmart_SM00237 GPR98 84059 genome.wustl.edu 37 5 89989993 89989993 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032119.3 +1 reviewed p.V2474I 0.000 89 0% 106 35.8% - - benign(0.059) tolerated(0.59) neutral(0.009) NULL PAM 5066 genome.wustl.edu 37 5 102360942 102360942 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000919.3 +1 reviewed p.P865S 0.996 52 0% 101 42.6% - - benign(0) tolerated(0.91) - NULL TRIM36 55521 genome.wustl.edu 37 5 114482917 114482917 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018700.3 -1 reviewed p.D158G 1.000 130 0% 179 30.2% - - benign(0.011) tolerated(0.33) neutral(0.025) superfamily_RING/U-box DMXL1 1657 genome.wustl.edu 37 5 118465057 118465057 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005509.4 +1 validated p.E418 1.000 33 0% 56 37.5% - - - - - superfamily_WD40 repeat-like HSD17B4 3295 genome.wustl.edu 37 5 118844941 118844941 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000414.2 +1 reviewed e16+2 0.992 132 0% 171 47.4% - - - - - - FTMT 94033 genome.wustl.edu 37 5 121187902 121187902 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_177478.1 +1 validated p.R82S 1.000 20 0% 37 29.7% - - probably_damaging(0.977) tolerated(0.12) deleterious(0.679) HMMPfam_Ferritin,superfamily_Ferritin/RR_like CEP120 153241 genome.wustl.edu 37 5 122722238 122722238 + Silent SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153223.3 -1 reviewed p.P518 0.995 61 0% 97 39.2% - - - - - NULL ZNF608 57507 genome.wustl.edu 37 5 123983453 123983453 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020747.2 -1 validated p.R875H 1.000 131 0% 156 53.8% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SLC27A6 28965 genome.wustl.edu 37 5 128351628 128351628 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001017372.1 +1 reviewed p.I340M 0.000 147 0% 141 44% - - benign(0) deleterious(0.03) neutral(0.364) HMMPfam_AMP-binding,superfamily_SSF56801 ADAMTS19 171019 genome.wustl.edu 37 5 128796104 128796104 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133638.3 +1 reviewed p.M1T 1.000 20 0% 32 37.5% - - benign(0.043) - - NULL ADAMTS19 171019 genome.wustl.edu 37 5 129037265 129037265 + Nonsense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133638.3 +1 reviewed p.E1041* 1.000 81 0% 75 42.7% - - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat SEC24A 10802 genome.wustl.edu 37 5 133997278 133997278 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021982.1 +1 validated e2+2 1.000 50 0% 29 17.2% - - - - - - CATSPER3 347732 genome.wustl.edu 37 5 134345169 134345169 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178019.2 +1 validated p.M309V 1.000 37 0% 27 44.4% - - benign(0.258) tolerated(0.23) neutral(0.069) NULL CXCL14 9547 genome.wustl.edu 37 5 134914147 134914147 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004887.4 -1 reviewed p.P61 0.995 52 0% 49 34.7% - - - - - superfamily_Interleukin 8-like chemokines FBXL21 26223 genome.wustl.edu 37 5 135272639 135272639 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012159.4 +1 validated p.V119A 1.000 84 0% 101 48.5% - - probably_damaging(0.999) tolerated(0.2) deleterious(0.539) superfamily_F-box domain SPOCK1 6695 genome.wustl.edu 37 5 136448186 136448186 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004598.3 -1 reviewed p.P138S 1.000 72 0% 94 39.4% - - probably_damaging(0.991) deleterious(0.03) deleterious(0.808) HMMSmart_KAZAL,HMMPfam_Kazal_2,superfamily_SSF100895 KDM3B 51780 genome.wustl.edu 37 5 137715346 137715346 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016604.3 +1 validated p.V218 0.998 79 0% 101 34.7% - - - - - NULL ANKHD1-EIF4EBP3 404734 genome.wustl.edu 37 5 139917700 139917700 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020690.4 +1 reviewed p.M2420V 1.000 298 0% 288 36.5% - - benign(0.001) tolerated(0.16) neutral(0.059) NULL PCDHA5 56143 genome.wustl.edu 37 5 140202909 140202909 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018908.2 +1 reviewed p.Y517H 0.392 27 0% 20 55% - - benign(0.085) tolerated(0.2) neutral(0.055) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB3 56132 genome.wustl.edu 37 5 140480750 140480750 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018937.2 +1 reviewed p.T173A 0.000 147 0% 99 32.3% - - benign(0.005) deleterious(0) neutral(0.445) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB6 56130 genome.wustl.edu 37 5 140531474 140531474 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018939.2 +1 reviewed p.R546C 0.977 121 0% 135 47.4% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHGB3 56102 genome.wustl.edu 37 5 140751822 140751822 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018924.2 +1 reviewed p.L621M 0.020 37 0% 31 32.3% - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB4 8641 genome.wustl.edu 37 5 140768701 140768701 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003736.2 +1 reviewed p.N417S 0.954 134 0% 118 38.1% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB6 56100 genome.wustl.edu 37 5 140788482 140788482 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018926.2 +1 reviewed p.N238S 0.998 54 0% 30 60% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like KIAA0141 9812 genome.wustl.edu 37 5 141313951 141313951 + Silent SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000507481 +1 known p.Q50P 0.261 144 0% 141 39.7% - - - - - HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like LARS 51520 genome.wustl.edu 37 5 145523018 145523018 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020117.9 -1 reviewed p.G612R 1.000 387 0% 576 44.3% - - benign(0.359) tolerated(0.07) neutral(0.433) superfamily_Nucleotidylyl transferase PPARGC1B 133522 genome.wustl.edu 37 5 149216457 149216459 + In_Frame_Del DEL GGA GGA - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 GGA GGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133263.3 +1 reviewed p.E817in_frame_del 0.792:0.855:0.852 - - - - - - - - - NULL GM2A 2760 genome.wustl.edu 37 5 150646364 150646364 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000405.4 +1 reviewed p.C106R 1.000 149 0% 158 50% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_ML,superfamily_SSF63707 SOX30 11063 genome.wustl.edu 37 5 157053644 157053644 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178424.1 -1 reviewed p.Y656H 1.000 148 0% 178 37.1% - - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL CCNJL 79616 genome.wustl.edu 37 5 159686623 159686623 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024565.5 -1 validated p.T194A 1.000 76 0% 52 34.6% - - probably_damaging(0.979) deleterious(0) deleterious(0.867) HMMPfam_Cyclin_C,superfamily_Cyclin-like WWC1 23286 genome.wustl.edu 37 5 167798537 167798537 + Silent SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015238.2 +1 reviewed p.T76 1.000 50 0% 51 23.5% - - - - - HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain ENSG00000251133 0 genome.wustl.edu 37 5 175716537 175716537 + RNA SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000505928 -1 novel NULL 0.001 46 0% 27 37% - - - - - - CDHR2 54825 genome.wustl.edu 37 5 176016058 176016058 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017675.4 +1 reviewed p.N961K 0.000 126 0% 98 30.6% - - possibly_damaging(0.83) deleterious(0) deleterious(0.760) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin DOK3 79930 genome.wustl.edu 37 5 176931310 176931310 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024872.2 -1 validated p.S389G 0.994 19 0.000 9 0.444 - - probably_damaging(0.955) tolerated(0.06) deleterious(0.721) NULL GRM6 2916 genome.wustl.edu 37 5 178418514 178418515 + Frame_Shift_Ins INS - - T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000843.3 -1 reviewed p.P257fs 0.998:0.996 - - - - - - - - - HMMPfam_ANF_receptor,superfamily_SSF53822 TRIM7 81786 genome.wustl.edu 37 5 180622642 180622642 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_203293.1 -1 reviewed p.R354C 1.000 31 0% 32 31.2% - - probably_damaging(0.997) tolerated(0.12) deleterious(0.727) HMMSmart_SM00589 FOXF2 2295 genome.wustl.edu 37 6 1390647 1390647 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001452.1 +1 reviewed p.N155K 1.000 11 0% 38 44.7% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) "HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain" PRPF4B 8899 genome.wustl.edu 37 6 4044125 4044125 + Nonsense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003913.4 +1 reviewed p.R577* 1.000 141 0% 182 53.3% - - - - - NULL DSP 1832 genome.wustl.edu 37 6 7580793 7580793 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004415.2 +1 reviewed p.M1457K 0.997 194 0% 207 47.8% - - benign(0) tolerated(1) - NULL KDM1B 221656 genome.wustl.edu 37 6 18218066 18218066 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153042.3 +1 validated p.Y547H 1.000 232 0% 303 30.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Amino_oxidase,superfamily_SSF51905 TDP2 51567 genome.wustl.edu 37 6 24653222 24653222 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016614.2 -1 reviewed p.R266G 1.000 204 0% 256 28.5% - - probably_damaging(0.96) deleterious(0) deleterious(0.848) HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos SCGN 10590 genome.wustl.edu 37 6 25701506 25701506 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006998.3 +1 reviewed p.D258 1.000 120 0% 156 42.3% - - - - - HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand HIST1H3A 8350 genome.wustl.edu 37 6 26020786 26020786 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003529.2 +1 reviewed p.T23 1.000 28 0% 46 32.6% - - - - - superfamily_Histone-fold HIST1H2BD 3017 genome.wustl.edu 37 6 26158488 26158488 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021063.2 +1 reviewed p.K31E 1.000 136 0% 142 35.9% - - benign(0.223) deleterious(0) neutral(0.467) HMMSmart_SM00427,superfamily_Histone-fold PPP1R10 5514 genome.wustl.edu 37 6 30573698 30573698 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002714.2 -1 reviewed e8+2 1.000 250 0% 289 31.8% - - - - - - MDC1 9656 genome.wustl.edu 37 6 30681012 30681012 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014641.2 -1 reviewed p.A236V 0.006 159 0% 187 54% - - unknown(0) deleterious(0) - NULL CLIC1 1192 genome.wustl.edu 37 6 31701662 31701662 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001288.4 -1 reviewed p.D76N 1.000 137 0% 159 37.1% - - possibly_damaging(0.806) tolerated(0.07) deleterious(0.623) superfamily_Thioredoxin-like TNXB 7148 genome.wustl.edu 37 6 32041612 32041612 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_019105.6 -1 reviewed p.E1498G 0.890 48 0% 33 39.4% - - possibly_damaging(0.763) deleterious(0.02) deleterious(0.666) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ATF6B 1388 genome.wustl.edu 37 6 32088819 32088819 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004381.4 -1 reviewed p.P216H 0.032 89 0% 101 37.6% - - possibly_damaging(0.936) deleterious(0.01) deleterious(0.787) NULL PSMB8 5696 genome.wustl.edu 37 6 32809342 32809342 + Silent SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_148919.3 -1 reviewed p.T236 0.998 115 0% 99 41.4% - - - - - HMMPfam_Proteasome,superfamily_SSF56235 BAK1 578 genome.wustl.edu 37 6 33541922 33541922 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001188.3 -1 reviewed p.L140 0.000 19 0% 24 33.3% - - benign(0) tolerated(0.27) neutral(0.034) HMMPfam_Bcl-2,HMMSmart_SM00337,superfamily_Bcl-2 inhibitors of programmed cell death ITPR3 3710 genome.wustl.edu 37 6 33632745 33632745 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002224.2 +1 validated p.M416T 1.000 26 0% 28 32.1% - - possibly_damaging(0.794) tolerated(0.1) deleterious(0.585) HMMPfam_MIR,superfamily_MIR ARMC12 221481 genome.wustl.edu 37 6 35705886 35705886 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145028.3 +1 predicted p.D109 0.943 75 0% 78 26.9% - - - - - HMMPfam_DUF634,superfamily_ARM-type_fold KCTD20 222658 genome.wustl.edu 37 6 36447385 36447385 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000265344 +1 known p.V94A 1.000 97 0% 123 31.7% - - unknown(0) - - NULL SRSF3 6428 genome.wustl.edu 37 6 36564615 36564615 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003017.4 +1 validated p.L26V 0.999 159 0% 197 33.5% - - possibly_damaging(0.547) tolerated(0.23) neutral(0.227) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD MDGA1 266727 genome.wustl.edu 37 6 37622143 37622143 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153487.3 -1 validated p.S297P 0.998 52 0% 47 61.7% - - possibly_damaging(0.667) deleterious(0.03) deleterious(0.601) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin LRFN2 57497 genome.wustl.edu 37 6 40399738 40399738 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020737.1 -1 provisional p.V372A 1.000 24 0% 22 36.4% - - possibly_damaging(0.725) tolerated(0.07) deleterious(0.583) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin LRFN2 57497 genome.wustl.edu 37 6 40400695 40400695 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020737.1 -1 provisional p.R53Q 1.000 29 0% 31 54.8% - - possibly_damaging(0.843) tolerated(0.05) deleterious(0.668) superfamily_L domain-like TREML2 79865 genome.wustl.edu 37 6 41162226 41162226 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024807.2 -1 validated p.T241I 0.004 16 0% 17 41.2% - - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL TREML4 285852 genome.wustl.edu 37 6 41197370 41197370 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000358696 +1 known p.R153G 0.005 66 0% 72 33.3% - - benign(0) tolerated(0.72) neutral(0.002) NULL KLC4 89953 genome.wustl.edu 37 6 43034747 43034747 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_201523.1 +1 validated p.Y287H 1.000 46 0% 55 32.7% - - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like POLH 5429 genome.wustl.edu 37 6 43550150 43550150 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006502.2 +1 reviewed p.K32E 1.000 75 0% 149 31.5% - - probably_damaging(0.976) deleterious(0.03) deleterious(0.782) HMMPfam_IMS,superfamily_DNA/RNA polymerases RUNX2 860 genome.wustl.edu 37 6 45459774 45459774 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001024630.3 +1 reviewed p.V329A 1.000 189 0% 246 50.4% - - benign(0.34) tolerated(0.59) neutral(0.112) NULL MUT 4594 genome.wustl.edu 37 6 49419255 49419255 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000255.3 -1 reviewed p.P419H 1.000 84 0% 176 46% - - probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,superfamily_Cobalamin (vitamin B12)-dependent enzymes PKHD1 5314 genome.wustl.edu 37 6 51613268 51613268 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138694.3 -1 reviewed p.H3049R 0.999 215 0% 277 33.2% - - probably_damaging(0.963) tolerated(0.06) deleterious(0.728) HMMSmart_SM00710,superfamily_Pectin lyase-like PKHD1 5314 genome.wustl.edu 37 6 51732848 51732848 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138694.3 -1 reviewed p.F2516L 1.000 103 0% 134 35.8% - - probably_damaging(0.999) tolerated(0.09) deleterious(0.787) NULL HCRTR2 3062 genome.wustl.edu 37 6 55128525 55128525 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001526.3 +1 reviewed p.Y223H 1.000 34 0% 38 21.1% - - benign(0.367) deleterious(0) deleterious(0.561) HMMPfam_7tm_1,superfamily_SSF81321 DDX43 55510 genome.wustl.edu 37 6 74116158 74116158 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018665.2 +1 reviewed p.T293 0.914 60 0% 67 20.9% - - - - - HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540 TTK 7272 genome.wustl.edu 37 6 80732089 80732089 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003318.4 +1 reviewed p.Q386R 0.006 177 0% 233 37.8% - - benign(0.149) tolerated(0.26) neutral(0.047) NULL TTK 7272 genome.wustl.edu 37 6 80751905 80751905 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003318.4 +1 reviewed p.R854G 0.014 64 0% 134 44% - - possibly_damaging(0.917) tolerated(0.15) deleterious(0.609) NULL IBTK 25998 genome.wustl.edu 37 6 82904194 82904194 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015525.2 -1 reviewed e22+2 0.990 61 0% 92 35.9% - - - - - - KLHL32 114792 genome.wustl.edu 37 6 97562121 97562121 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052904.3 +1 validated p.A364T 1.000 83 0% 64 48.4% - - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain USP45 85015 genome.wustl.edu 37 6 99914615 99914615 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080481.1 -1 provisional p.M347T 1.000 90 0% 108 23.1% - - probably_damaging(0.992) tolerated(0.25) deleterious(0.484) HMMPfam_UCH,superfamily_Cysteine proteinases AKD1 221264 genome.wustl.edu 37 6 109850251 109850251 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000424296 -1 known p.A278V 1.000 137 0% 203 39.9% - - probably_damaging(0.977) tolerated(0.8) neutral(0.419) superfamily_SSF52540 LOC441166 441166 genome.wustl.edu 37 6 111179990 111179990 + RNA SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XR_016728.3 +1 model NULL 0.672 52 0% 46 15.2% - - - - - - NKAIN2 154215 genome.wustl.edu 37 6 124604204 124604204 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001040214.1 +1 reviewed p.P36 0.985 224 0% 330 31.5% - - - - - HMMPfam_NKAIN L3MBTL3 84456 genome.wustl.edu 37 6 130442079 130442079 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032438.1 +1 validated p.M648L 0.909 138 0% 258 31.4% - - benign(0) tolerated(0.65) neutral(0.003) NULL CTGF 1490 genome.wustl.edu 37 6 132271177 132271177 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001901.2 -1 reviewed p.T222N 1.000 37 0% 39 48.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat VNN1 8876 genome.wustl.edu 37 6 133014259 133014259 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004666.2 -1 reviewed p.H244Y 1.000 127 0% 147 38.8% - - benign(0.268) deleterious(0.02) neutral(0.412) superfamily_Ntlse/CNhydtse VNN2 8875 genome.wustl.edu 37 6 133065598 133065598 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004665.2 -1 reviewed p.N468 0.332 109 0% 138 42.8% - - - - - NULL SLC18B1 116843 genome.wustl.edu 37 6 133092030 133092030 + Missense_Mutation SNP T T C rs181766051 by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052831.2 -1 validated p.R435G 0.973 160 0% 298 43% - - benign(0.254) deleterious(0.03) neutral(0.391) superfamily_MFS general substrate transporter FBXO30 84085 genome.wustl.edu 37 6 146125969 146125969 + Nonsense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032145.4 -1 reviewed p.Q525* 1.000 260 0% 384 41.7% - - - - - NULL GRM1 2911 genome.wustl.edu 37 6 146755413 146755413 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000838.3 +1 reviewed p.Q1022 0.012 76 0% 73 32.9% - - - - - NULL KATNA1 11104 genome.wustl.edu 37 6 149916232 149916232 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007044.2 -1 reviewed p.S472 0.954 100 0% 120 35% - - - - - HMMPfam_Vps4_C,superfamily_P-loop containing nucleoside triphosphate hydrolases KATNA1 11104 genome.wustl.edu 37 6 149919454 149919454 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007044.2 -1 reviewed p.I307 1.000 124 0% 110 32.7% - - - - - HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases LRP11 84918 genome.wustl.edu 37 6 150164193 150164193 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032832.5 -1 validated p.V280A 1.000 63 0% 52 51.9% - - possibly_damaging(0.94) deleterious(0) deleterious(0.830) HMMSmart_SM00089 AKAP12 9590 genome.wustl.edu 37 6 151672475 151672475 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005100.3 +1 reviewed p.G983 0.323 117 0% 129 34.1% - - - - - NULL SYNE1 23345 genome.wustl.edu 37 6 152589256 152589256 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182961.2 -1 reviewed p.S6250 0.949 119 0% 145 37.2% - - - - - HMMSmart_SM00150 PLG 5340 genome.wustl.edu 37 6 161155027 161155027 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000301.3 +1 reviewed p.Y530H 1.000 64 0% 86 38.4% - - probably_damaging(0.973) deleterious(0.02) deleterious(0.798) HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1 RPS6KA2 6196 genome.wustl.edu 37 6 166904175 166904175 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001006932.1 -1 reviewed p.M276V 0.987 10 0% 12 33.3% - - benign(0.021) tolerated(0.16) neutral(0.060) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase TTLL2 83887 genome.wustl.edu 37 6 167754346 167754346 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_031949.4 +1 validated p.C320S 0.928 333 0% 347 37.5% - - probably_damaging(1) tolerated(0.51) deleterious(0.509) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like CARD11 84433 genome.wustl.edu 37 7 2983932 2983932 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032415.3 -1 validated p.D200N 1.000 105 0% 38 60.5% - - benign(0.208) deleterious(0) neutral(0.465) NULL ACTB 60 genome.wustl.edu 37 7 5568298 5568298 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001101.3 -1 reviewed p.V139A 1.000 46 0% 20 80% - - benign(0) - - HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain CCZ1B 221960 genome.wustl.edu 37 7 6854430 6854430 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198097.2 -1 predicted p.T249A 1.000 95 0% 55 49.1% - - possibly_damaging(0.905) tolerated(0.13) deleterious(0.612) HMMPfam_DUF2049 PHF14 9678 genome.wustl.edu 37 7 11075380 11075381 + Frame_Shift_Del DEL AG AG - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000303905 +1 known p.K527fs 1.000:1.000 - - - - - - - - - NULL HDAC9 9734 genome.wustl.edu 37 7 18868811 18868811 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178425.2 +1 reviewed p.G784C 1.000 160 0% 111 12.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hist_deacetyl,superfamily_SSF52768 KLHL7 55975 genome.wustl.edu 37 7 23164783 23164783 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001031710.2 +1 reviewed p.N145S 1.000 63 0% 46 84.8% - - probably_damaging(0.992) deleterious(0) deleterious(0.892) NULL MPP6 51678 genome.wustl.edu 37 7 24727082 24727082 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016447.2 +1 provisional p.D491G 1.000 125 0.8% 113 86.7% - - benign(0.011) tolerated(0.06) neutral(0.323) HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases NOD1 10392 genome.wustl.edu 37 7 30490878 30490878 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006092.2 -1 reviewed p.G719S 1.000 15 0.000 7 1.000 - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52047 GLI3 2737 genome.wustl.edu 37 7 42088271 42088271 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000168.5 -1 reviewed p.P166 0.871 56 0% 30 73.3% - - - - - NULL GTF2I 2969 genome.wustl.edu 37 7 74105436 74105436 + Silent SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032999.2 +1 reviewed p.V77 0.396 112 0% 105 37.1% - - - - - NULL PION 54103 genome.wustl.edu 37 7 77004377 77004377 + Frame_Shift_Del DEL A A - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017439.3 -1 validated p.F261fs 0.971 - - - - - - - - - NULL PHTF2 57157 genome.wustl.edu 37 7 77531192 77531192 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001127357.1 +1 validated p.S100P 1.000 12 0% 17 41.2% - - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL PCLO 27445 genome.wustl.edu 37 7 82430854 82430854 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033026.5 -1 validated p.V4996A 0.142 37 0% 51 35.3% - - unknown(0) - - NULL AKAP9 10142 genome.wustl.edu 37 7 91625067 91625067 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005751.4 +1 reviewed p.T295A 1.000 25 0% 64 35.9% - - benign(0) tolerated(0.7) neutral(0.002) NULL LMTK2 22853 genome.wustl.edu 37 7 97822474 97822474 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014916.3 +1 reviewed p.S899 0.000 89 0% 91 24.2% - - - - - NULL TMEM130 222865 genome.wustl.edu 37 7 98460814 98460814 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001134450.1 -1 validated p.V99M 0.000 110 0% 98 45.9% - - benign(0.006) tolerated(0.17) neutral(0.059) NULL TRRAP 8295 genome.wustl.edu 37 7 98609005 98609005 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003496.2 +1 validated p.I3685M 0.962 131 0% 115 35.7% - - benign(0.382) tolerated(0.11) neutral(0.394) HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat OR2AE1 81392 genome.wustl.edu 37 7 99474116 99474116 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005276.1 -1 provisional p.F181L 0.082 129 0% 151 31.1% - - benign(0.002) tolerated(0.07) neutral(0.319) HMMPfam_7tm_1,superfamily_SSF81321 FBXO24 26261 genome.wustl.edu 37 7 100187982 100187982 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033506.2 +1 reviewed e3+2 1.000 133 0% 124 46.8% - - - - - - SRRT 51593 genome.wustl.edu 37 7 100485886 100485886 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015908.5 +1 validated p.V813I 1.000 78 0% 86 47.7% - - possibly_damaging(0.873) tolerated(0.34) neutral(0.362) HMMPfam_ARS2 MUC17 140453 genome.wustl.edu 37 7 100682084 100682084 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001040105.1 +1 provisional p.V2463F 0.007 317 0% 332 45.2% - - possibly_damaging(0.916) - - NULL LRRC17 10234 genome.wustl.edu 37 7 102579934 102579934 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001031692.2 +1 validated p.Y277S 0.998 97 0% 163 34.4% - - benign(0) tolerated(0.84) neutral(0.001) HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like PMPCB 9512 genome.wustl.edu 37 7 102952581 102952581 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000428154 +1 known p.K470E 1.000 229 0% 315 33% - - benign(0.003) tolerated(0.91) - superfamily_LuxS/MPP-like metallohydrolase SLC26A5 375611 genome.wustl.edu 37 7 103061828 103061828 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198999.2 -1 reviewed p.K45T 1.000 76 0% 83 38.6% - - possibly_damaging(0.912) deleterious(0.04) deleterious(0.712) NULL MLL5 55904 genome.wustl.edu 37 7 104717611 104717611 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018682.3 +1 reviewed p.N324H 1.000 168 0% 200 50.5% - - benign(0.109) deleterious(0.05) neutral(0.354) HMMPfam_SET HBP1 26959 genome.wustl.edu 37 7 106827090 106827090 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012257.3 +1 validated p.C243W 1.000 169 0% 191 44% - - benign(0) deleterious(0.03) neutral(0.364) HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain METTL2B 55798 genome.wustl.edu 37 7 128128475 128128475 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000419443 +1 known p.T79A 0.000 12 0% 13 30.8% - - - - - NULL PLXNA4 91584 genome.wustl.edu 37 7 131866877 131866877 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020911.1 -1 validated p.H1077 0.418 56 0% 36 36.1% - - - - - HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains WDR91 29062 genome.wustl.edu 37 7 134871760 134871760 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014149.3 -1 validated p.M681I 1.000 120 0% 113 39.8% - - possibly_damaging(0.452) tolerated(0.29) neutral(0.177) superfamily_WD40 repeat-like KIAA1549 57670 genome.wustl.edu 37 7 138591663 138591663 + Splice_Site SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020910.2 -1 validated e5+2 1.000 85 0% 102 50% - - - - - - CLEC2L 154790 genome.wustl.edu 37 7 139225185 139225185 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080511.2 +1 inferred p.C128 0.995 9 0.000 6 0.667 - - - - - HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold ADCK2 90956 genome.wustl.edu 37 7 140373833 140373833 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052853.3 +1 validated p.A235T 0.006 27 0% 36 36.1% - - benign(0.025) tolerated(0.51) neutral(0.010) HMMPfam_ABC1 GSTK1 373156 genome.wustl.edu 37 7 142962103 142962103 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001143679.1 +1 reviewed p.R101H 0.991 90 0% 68 33.8% - - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_DSBA,superfamily_Thiordxn-like_fd EPHA1 2041 genome.wustl.edu 37 7 143095907 143095907 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005232.4 -1 reviewed p.G375C 0.261 28 0% 31 45.2% - - possibly_damaging(0.841) tolerated(0.06) deleterious(0.644) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III CTAGE6P 340307 genome.wustl.edu 37 7 143453340 143453340 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178561.4 -1 validated p.T471I 0.441 504 0% 700 15.3% - - - - - NULL PDIA4 9601 genome.wustl.edu 37 7 148701212 148701212 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004911.4 -1 validated p.I538V 1.000 80 0% 70 42.9% - - benign(0) tolerated(0.81) neutral(0.001) superfamily_Thioredoxin-like,HMMPfam_Thioredoxin ZNF862 643641 genome.wustl.edu 37 7 149545505 149545505 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099220.1 +1 provisional p.V308A 0.049 23 0% 17 70.6% - - benign(0) tolerated(0.51) neutral(0.009) NULL ERICH1 157697 genome.wustl.edu 37 8 623979 623979 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_207332.1 -1 provisional p.N125D 0.003 36 0% 36 38.9% - - probably_damaging(0.99) tolerated(0.26) deleterious(0.476) NULL DLGAP2 9228 genome.wustl.edu 37 8 1497554 1497554 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004745.3 +1 reviewed p.P232L 0.995 77 0% 48 43.8% - - possibly_damaging(0.81) tolerated(0.08) deleterious(0.605) NULL XKR6 286046 genome.wustl.edu 37 8 10755611 10755611 + Nonsense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173683.3 -1 provisional p.R593* 1.000 177 0% 169 15.4% - - - - - NULL LONRF1 91694 genome.wustl.edu 37 8 12586561 12586561 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152271.3 -1 provisional p.Y620C 1.000 116 0% 170 37.6% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_LON,HMMSmart_SM00464 LONRF1 91694 genome.wustl.edu 37 8 12592793 12592793 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152271.3 -1 provisional e7+2 1.000 13 0% 19 26.3% - - - - - - PCM1 5108 genome.wustl.edu 37 8 17883071 17883071 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006197.3 +1 validated p.M1985V 1.000 41 0% 40 40% - - benign(0.012) tolerated(0.2) neutral(0.050) NULL NAT1 9 genome.wustl.edu 37 8 18080344 18080344 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000662.5 +1 reviewed p.I263R 0.967 107 0% 174 24.7% - - probably_damaging(0.968) deleterious(0) deleterious(0.855) HMMPfam_Acetyltransf_2,superfamily_SSF54001 PSD3 23362 genome.wustl.edu 37 8 18393309 18393309 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015310.3 -1 validated p.S1030T 1.000 127 0% 127 52.8% - - probably_damaging(0.973) deleterious(0.03) deleterious(0.779) NULL PIWIL2 55124 genome.wustl.edu 37 8 22140607 22140607 + Silent SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001135721.1 +1 validated p.G162 0.006 78 0% 55 36.4% - - - - - NULL SLC39A14 23516 genome.wustl.edu 37 8 22273407 22273407 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001128431.2 +1 validated p.S292 0.000 96 0% 87 29.9% - - - - - HMMPfam_Zip RHOBTB2 23221 genome.wustl.edu 37 8 22865139 22865139 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015178.2 +1 validated p.R461C 1.000 85 0% 102 14.7% - - benign(0.2) tolerated(0.11) neutral(0.291) HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB DOCK5 80005 genome.wustl.edu 37 8 25161825 25161825 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024940.6 +1 validated p.H344R 1.000 22 0% 42 40.5% - - probably_damaging(0.981) tolerated(0.29) neutral(0.455) NULL DOCK5 80005 genome.wustl.edu 37 8 25183061 25183061 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024940.6 +1 validated p.N634S 1.000 121 0% 149 47% - - probably_damaging(1) tolerated(0.29) deleterious(0.529) NULL KIF13B 23303 genome.wustl.edu 37 8 29023177 29023177 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015254.3 -1 validated e12+2 1.000 64 0% 63 30.2% - - - - - - MAK16 84549 genome.wustl.edu 37 8 33354213 33354213 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032509.3 +1 validated p.D198G 0.982 29 0% 41 31.7% - - benign(0.025) tolerated(0.2) neutral(0.050) HMMPfam_Mak16 STAR 6770 genome.wustl.edu 37 8 38008285 38008285 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000349.2 -1 reviewed p.R18C 1.000 118 0.8% 148 10.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL DDHD2 23259 genome.wustl.edu 37 8 38090631 38090631 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015214.2 +1 validated p.V40A 0.997 61 0% 56 26.8% - - probably_damaging(0.987) tolerated(0.1) deleterious(0.723) HMMPfam_WWE DDHD2 23259 genome.wustl.edu 37 8 38091919 38091919 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015214.2 +1 validated p.G76 0.712 124 0% 138 37.7% - - - - - HMMPfam_WWE ADAM2 2515 genome.wustl.edu 37 8 39607213 39607213 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001464.3 -1 reviewed p.C616 0.035 76 0% 79 54.4% - - - - - HMMPfam_EGF_2 ANK1 286 genome.wustl.edu 37 8 41530248 41530248 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142446.1 -1 reviewed p.T1615A 1.000 66 0% 64 29.7% - - benign(0.323) tolerated(0.21) neutral(0.145) NULL FNTA 2339 genome.wustl.edu 37 8 42932469 42932469 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002027.2 +1 reviewed p.T248 0.963 68 0% 79 46.8% - - - - - HMMPfam_PPTA,superfamily_Protein prenylyltransferase SGK196 84197 genome.wustl.edu 37 8 42977654 42977654 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032237.3 +1 validated p.D229 0.910 57 0% 54 14.8% - - - - - HMMPfam_Pkinase_Tyr,superfamily_Kinase_like PRKDC 5591 genome.wustl.edu 37 8 48716000 48716000 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001081640.1 -1 validated p.I3263T 0.048 181 0% 228 41.2% - - - - - NULL PRKDC 5591 genome.wustl.edu 37 8 48848923 48848923 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000314191 -1 known p.Y423C 1.000 119 0% 122 46.7% - - possibly_damaging(0.939) tolerated(0.12) deleterious(0.645) superfamily_ARM repeat FAM110B 90362 genome.wustl.edu 37 8 59059421 59059421 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_147189.2 +1 validated p.P211H 1.000 76 0% 78 48.7% - - possibly_damaging(0.927) tolerated(0.13) deleterious(0.627) NULL TRIM55 84675 genome.wustl.edu 37 8 67066340 67066340 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_184085.1 +1 reviewed p.A432V 0.668 153 0% 206 24.8% - - benign(0.071) deleterious(0) neutral(0.450) NULL ADHFE1 137872 genome.wustl.edu 37 8 67355031 67355031 + Splice_Site SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144650.2 +1 validated e3-2 1.000 129 0% 171 30.4% - - - - - - CSPP1 79848 genome.wustl.edu 37 8 68084681 68084681 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001077204.1 +1 validated p.F983 1.000 29 0% 53 45.3% - - - - - NULL PREX2 80243 genome.wustl.edu 37 8 69136797 69136797 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024870.2 +1 validated p.A1571S 1.000 80 0% 99 50.5% - - possibly_damaging(0.61) tolerated(0.05) deleterious(0.557) NULL SLCO5A1 81796 genome.wustl.edu 37 8 70617428 70617428 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030958.2 -1 reviewed p.V487A 1.000 209 0% 215 32.6% - - possibly_damaging(0.917) deleterious(0.02) deleterious(0.751) HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter NCOA2 10499 genome.wustl.edu 37 8 71069130 71069130 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006540.2 -1 validated p.H490 1.000 66 0% 99 27.3% - - - - - NULL DECR1 1666 genome.wustl.edu 37 8 91049094 91049094 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001359.1 +1 reviewed p.T197 0.229 198 0% 321 34.3% - - - - - HMMPfam_adh_short,superfamily_NAD(P)-bd TMEM67 91147 genome.wustl.edu 37 8 94816991 94816991 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153704.5 +1 reviewed p.I775T 1.000 45 0% 70 25.7% - - benign(0.386) deleterious(0.01) deleterious(0.529) HMMPfam_Meckelin LAPTM4B 55353 genome.wustl.edu 37 8 98837316 98837316 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018407.4 +1 validated p.Y271H 1.000 124 0% 133 35.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Mtp VPS13B 157680 genome.wustl.edu 37 8 100133663 100133663 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017890.3 +1 reviewed p.V399E 1.000 147 0% 209 31.1% - - possibly_damaging(0.837) deleterious(0) deleterious(0.764) NULL KLF10 7071 genome.wustl.edu 37 8 103664539 103664539 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005655.2 -1 validated p.A41 0.962 99 0% 188 43.1% - - - - - NULL LRP12 29967 genome.wustl.edu 37 8 105509287 105509287 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013437.4 -1 reviewed p.V498A 1.000 83 0% 83 53% - - benign(0.215) tolerated(0.07) neutral(0.340) superfamily_LDL receptor-like module TTC35 9694 genome.wustl.edu 37 8 109462075 109462075 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014673.3 +1 provisional p.W22R 1.000 120 0% 143 47.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Prenyl_trans CYP11B2 1585 genome.wustl.edu 37 8 143994248 143994248 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000498.3 -1 reviewed p.L392P 1.000 46 0% 30 46.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_p450,superfamily_Cytochrome P450 ZNF623 9831 genome.wustl.edu 37 8 144732948 144732948 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014789.3 +1 validated p.H302 0.000 502 0% 435 35.6% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DOCK8 81704 genome.wustl.edu 37 9 463594 463594 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_203447.3 +1 reviewed p.N1981S 1.000 76 0% 93 29% - - probably_damaging(0.966) deleterious(0.01) deleterious(0.814) HMMPfam_Ded_cyto KANK1 23189 genome.wustl.edu 37 9 738488 738488 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015158.2 +1 reviewed p.K1179N 1.000 121 0% 102 46.1% - - benign(0.395) deleterious(0.02) deleterious(0.510) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK CDC37L1 55664 genome.wustl.edu 37 9 4684914 4684917 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AGAA AGAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017913.2 +1 validated p.K58fs 1.000:0.996:1.000:1.000 - - - - - - - - - NULL RCL1 10171 genome.wustl.edu 37 9 4827086 4827086 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000381732 +1 known p.N146S 0.000 77 0% 89 53.9% - - unknown(0) tolerated(0.43) - NULL GLDC 2731 genome.wustl.edu 37 9 6588416 6588416 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000170.2 -1 reviewed p.S564 1.000 135 0% 130 30% - - - - - superfamily_PyrdxlP-dep_Trfase_major GLDC 2731 genome.wustl.edu 37 9 6589220 6589220 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000170.2 -1 reviewed p.F519L 1.000 80 0% 93 28% - - possibly_damaging(0.574) deleterious(0.02) deleterious(0.580) NULL NFIB 4781 genome.wustl.edu 37 9 14307296 14307296 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005596.2 -1 validated p.R85H 1.000 81 0% 112 46.4% - - probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_MH1,HMMSmart_SM00523 MLLT3 4300 genome.wustl.edu 37 9 20413907 20413907 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004529.2 -1 validated p.A313T 0.937 102 0% 132 46.2% - - possibly_damaging(0.901) tolerated(0.12) deleterious(0.617) NULL C9orf72 203228 genome.wustl.edu 37 9 27562388 27562388 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018325.2 -1 validated p.E197D 1.000 28 0% 61 39.3% - - probably_damaging(0.971) deleterious(0) deleterious(0.857) NULL KIF24 347240 genome.wustl.edu 37 9 34257619 34257619 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_194313.2 -1 validated p.P662 0.027 130 0% 120 36.7% - - - - - NULL KIAA1161 57462 genome.wustl.edu 37 9 34371522 34371522 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000297625 -1 known p.F440L 1.000 9 0.000 12 0.333 - - benign(0.017) tolerated(0.62) neutral(0.005) HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases DNAI1 27019 genome.wustl.edu 37 9 34506854 34506854 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012144.2 +1 reviewed p.H431 1.000 27 0% 25 28% - - - - - HMMSmart_WD40,superfamily_WD40_like RPP25L 138716 genome.wustl.edu 37 9 34610991 34610991 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_148178.1 -1 validated p.P101 0.499 37 0% 34 35.3% - - - - - superfamily_SSF82704 CCDC107 203260 genome.wustl.edu 37 9 35661109 35661109 + Missense_Mutation SNP G G C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_174923.1 +1 provisional p.K259N 0.002 59 0% 46 41.3% - - benign(0.003) tolerated(0.05) neutral(0.345) NULL TLN1 7094 genome.wustl.edu 37 9 35697899 35697899 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006289.3 -1 reviewed p.Q2505H 1.000 38 0% 35 17.1% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_I_LWEQ,HMMSmart_ILWEQ HINT2 84681 genome.wustl.edu 37 9 35813291 35813291 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032593.2 -1 validated p.A124 0.999 164 0% 163 44.8% - - - - - HMMPfam_HIT,superfamily_HIT-like TMEM8B 51754 genome.wustl.edu 37 9 35852855 35852855 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001042589.1 +1 provisional p.V284A 1.000 123 0% 108 41.7% - - probably_damaging(0.987) tolerated(0.75) neutral(0.438) NULL FRMPD1 22844 genome.wustl.edu 37 9 37740591 37740591 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014907.2 +1 validated p.L689P 0.121 64 0% 75 32% - - benign(0) tolerated(0.27) neutral(0.034) NULL DCAF10 79269 genome.wustl.edu 37 9 37861389 37861389 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024345.3 +1 validated p.R522C 1.000 123 0% 153 11.1% - - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 TRPM3 80036 genome.wustl.edu 37 9 73218282 73218282 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000396280 -1 known p.P761S 0.014 100 0% 108 49.1% - - - - - HMMPfam_Ion_trans TMEM2 23670 genome.wustl.edu 37 9 74345683 74345683 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013390.2 -1 validated p.G571S 0.988 149 0% 168 31.5% - - possibly_damaging(0.559) tolerated(0.45) neutral(0.203) superfamily_Pectin lyase-like HNRNPK 3190 genome.wustl.edu 37 9 86586623 86586623 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002140.3 -1 reviewed p.D324 0.998 226 0% 252 50.4% - - - - - NULL ROR2 4920 genome.wustl.edu 37 9 94519667 94519667 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004560.2 -1 reviewed p.G117D 1.000 161 0% 158 14.6% - - probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 BICD2 23299 genome.wustl.edu 37 9 95482775 95482775 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001003800.1 -1 reviewed p.A290V 0.284 23 0% 33 30.3% - - benign(0.024) deleterious(0.05) neutral(0.346) HMMPfam_BicD BICD2 23299 genome.wustl.edu 37 9 95491422 95491422 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001003800.1 -1 reviewed p.Y113H 1.000 32 0% 29 34.5% - - possibly_damaging(0.915) tolerated(0.4) neutral(0.383) HMMPfam_BicD ENSG00000249385 0 genome.wustl.edu 37 9 99883861 99883861 + RNA SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000504063 -1 known NULL 0.972 13 0% 13 53.8% - - - - - - COL15A1 1306 genome.wustl.edu 37 9 101818586 101818586 + Silent SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001855.3 +1 reviewed p.G1079 0.013 40 0% 38 42.1% - - - - - NULL INVS 27130 genome.wustl.edu 37 9 103054846 103054846 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014425.2 +1 reviewed p.P769 0.000 63 0% 74 35.1% - - - - - NULL TEX10 54881 genome.wustl.edu 37 9 103102648 103102648 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017746.3 -1 validated p.S381P 0.746 153 0.7% 191 37.7% - - benign(0.069) tolerated(0.08) neutral(0.304) NULL PALM2-AKAP2 445815 genome.wustl.edu 37 9 112778274 112778274 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007203.4 +1 validated p.S179 0.000 39 0% 57 40.4% - - - - - NULL SVEP1 79987 genome.wustl.edu 37 9 113276339 113276339 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153366.3 -1 validated p.S338G 1.000 19 0% 34 38.2% - - probably_damaging(0.971) tolerated(0.24) neutral(0.450) superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3 KIAA0368 23392 genome.wustl.edu 37 9 114152381 114152381 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080398.1 -1 provisional p.G1232 0.999 28 0% 52 13.5% - - - - - superfamily_ARM repeat DNAJC25 548645 genome.wustl.edu 37 9 114411802 114411803 + Frame_Shift_Ins INS - - A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001015882.2 +1 provisional p.A188fs 1.000:1.000 - - - - - - - - - NULL RGS3 5998 genome.wustl.edu 37 9 116359227 116359227 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144488.4 +1 reviewed p.P1197 0.998 7 0.000 20 0.500 - - - - - NULL TRIM32 22954 genome.wustl.edu 37 9 119460539 119460539 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099679.1 +1 reviewed p.V173A 0.997 68 0% 64 40.6% - - benign(0.14) tolerated(0.39) neutral(0.028) NULL MEGF9 1955 genome.wustl.edu 37 9 123367661 123367661 + Missense_Mutation SNP C C G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080497.1 -1 provisional p.R576P 1.000 125 0% 133 40.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RBM18 92400 genome.wustl.edu 37 9 125004184 125004184 + Silent SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033117.3 -1 validated p.T184 1.000 87 0% 114 34.2% - - - - - NULL OLFML2A 169611 genome.wustl.edu 37 9 127572306 127572306 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182487.2 +1 validated p.V525A 1.000 42 0% 34 50% - - possibly_damaging(0.67) tolerated(0.12) deleterious(0.498) HMMPfam_OLF,HMMSmart_SM00284 FAM129B 64855 genome.wustl.edu 37 9 130270705 130270705 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022833.2 -1 validated p.L477P 1.000 32 0% 23 21.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FPGS 2356 genome.wustl.edu 37 9 130566616 130566616 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004957.4 +1 reviewed p.Q64R 1.000 27 0% 25 20% - - benign(0) tolerated(0.26) neutral(0.034) superfamily_MurD-like peptide ligases catalytic domain SLC25A25 114789 genome.wustl.edu 37 9 130854248 130854248 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001006642.1 +1 validated p.P33 0.380 38 0% 39 59% - - - - - NULL LCN2 3934 genome.wustl.edu 37 9 130914298 130914298 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005564.3 +1 validated p.L157I 0.890 105 0% 88 34.1% - - benign(0.332) deleterious(0) deleterious(0.548) HMMPfam_Lipocalin,superfamily_Lipocalins CIZ1 25792 genome.wustl.edu 37 9 130941458 130941458 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001131016.1 -1 validated p.K343R 0.996 57 0% 44 45.5% - - benign(0.157) tolerated(0.84) neutral(0.015) NULL C9orf114 51490 genome.wustl.edu 37 9 131588858 131588858 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016390.2 -1 validated p.V140E 0.992 42 0% 37 48.6% - - possibly_damaging(0.914) tolerated(0.52) neutral(0.374) HMMPfam_DUF171,superfamily_SSF75217 NUP188 23511 genome.wustl.edu 37 9 131721314 131721314 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015354.1 +1 validated p.V162 0.996 187 0% 181 34.8% - - - - - HMMPfam_Nup188 LAMC3 10319 genome.wustl.edu 37 9 133927971 133927971 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006059.3 +1 reviewed p.L575P 1.000 35 0% 32 25% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Laminin_B NUP214 8021 genome.wustl.edu 37 9 134008542 134008542 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005085.2 +1 reviewed p.A259 0.041 170 0% 201 34.8% - - - - - superfamily_WD40 repeat-like PRRC2B 84726 genome.wustl.edu 37 9 134349932 134349932 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013318.3 +1 validated p.S806G 1.000 50 0% 43 25.6% - - benign(0.247) deleterious(0) deleterious(0.470) NULL SURF6 6838 genome.wustl.edu 37 9 136199054 136199054 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006753.4 -1 reviewed p.R246Q 0.983 29 0% 37 32.4% - - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_SURF6 SURF4 6836 genome.wustl.edu 37 9 136233513 136233513 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033161.2 -1 reviewed p.Y92H 1.000 14 0% 23 34.8% - - possibly_damaging(0.796) tolerated(0.34) neutral(0.322) HMMPfam_SURF4 COL5A1 1289 genome.wustl.edu 37 9 137716639 137716639 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000093.3 +1 reviewed p.T1631M 0.996 28 0% 28 57.1% - - unknown(0) deleterious(0) - HMMPfam_COLFI,HMMSmart_COLFI CAMSAP1 157922 genome.wustl.edu 37 9 138710455 138710456 + Frame_Shift_Ins INS - - T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015447.3 -1 validated p.A1322fs 1.000:1.000 - - - - - - - - - NULL QSOX2 169714 genome.wustl.edu 37 9 139100671 139100671 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181701.3 -1 validated p.L667R 0.987 30 0% 30 63.3% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL DPP7 29952 genome.wustl.edu 37 9 140007889 140007889 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013379.2 -1 reviewed p.A182V 0.997 5 0.000 10 0.700 - - probably_damaging(0.972) deleterious(0) deleterious(0.859) HMMPfam_Peptidase_S28,superfamily_SSF53474 ANAPC2 29882 genome.wustl.edu 37 9 140082343 140082343 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013366.3 -1 reviewed p.L110 1.000 18 0% 30 33.3% - - - - - NULL COBRA1 25920 genome.wustl.edu 37 9 140157534 140157534 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015456.3 +1 validated p.Y215H 1.000 18 0% 16 31.2% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_COBRA1 DIP2C 22982 genome.wustl.edu 37 10 409225 409225 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014974.2 -1 reviewed p.L835P 1.000 25 0% 29 27.6% - - probably_damaging(0.981) tolerated(0.26) neutral(0.460) superfamily_SSF56801 PFKP 5214 genome.wustl.edu 37 10 3175485 3175485 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000433193 +1 known p.T20M 0.996 84 0% 82 53.7% - - - - - HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE PITRM1 10531 genome.wustl.edu 37 10 3193389 3193389 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000458418 -1 known p.N391K 0.000 15 0% 12 41.7% - - benign(0.001) - - NULL AKR1C4 1109 genome.wustl.edu 37 10 5247791 5247791 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001818.2 +1 reviewed p.T147 0.153 79 0% 107 40.2% - - - - - HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase FAM208B 54906 genome.wustl.edu 37 10 5782232 5782232 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017782.4 +1 validated p.H700R 0.961 105 1% 137 34.3% - - benign(0.05) deleterious(0.02) neutral(0.386) NULL SEPHS1 22929 genome.wustl.edu 37 10 13380706 13380706 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012247.3 -1 reviewed p.M99T 1.000 106 0% 130 40% - - possibly_damaging(0.594) deleterious(0.01) deleterious(0.611) HMMPfam_AIRS,superfamily_PurM N-terminal domain-like SUV39H2 79723 genome.wustl.edu 37 10 14939270 14939270 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024670.3 +1 provisional p.C141 1.000 164 0% 179 33% - - - - - HMMPfam_Pre-SET,superfamily_SSF82199 DCLRE1C 64421 genome.wustl.edu 37 10 14950785 14950785 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001033855.1 -1 reviewed p.S567 0.000 206 0.5% 268 32.8% - - - - - NULL CUBN 8029 genome.wustl.edu 37 10 16982148 16982148 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001081.3 -1 reviewed p.Y1811H 0.996 241 0% 374 42.5% - - probably_damaging(0.983) deleterious(0.01) deleterious(0.835) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain KIAA1217 56243 genome.wustl.edu 37 10 24822124 24822124 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_019590.3 +1 validated p.E1124 0.998 149 0% 139 13.7% - - - - - NULL MYO3A 53904 genome.wustl.edu 37 10 26482209 26482209 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017433.4 +1 reviewed p.P1505H 1.000 187 0.5% 245 42.9% - - possibly_damaging(0.936) deleterious(0) deleterious(0.826) NULL PDSS1 23590 genome.wustl.edu 37 10 27012843 27012843 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014317.3 +1 reviewed p.R240C 1.000 121 0% 104 13.5% - - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_polyprenyl_synt,superfamily_Terpenoid synthases ZEB1 6935 genome.wustl.edu 37 10 31809531 31809531 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030751.5 +1 reviewed p.N423S 0.997 165 0% 216 37.5% - - benign(0.227) tolerated(0.25) neutral(0.059) NULL ZNF485 220992 genome.wustl.edu 37 10 44112215 44112215 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145312.3 +1 validated p.Y242H 0.950 86 0% 105 35.2% - - possibly_damaging(0.731) deleterious(0.03) deleterious(0.631) HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 FAM21C 253725 genome.wustl.edu 37 10 46224343 46224343 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015262.2 +1 validated p.T54A 1.000 171 0% 217 36.9% - - possibly_damaging(0.723) tolerated(0.08) deleterious(0.562) NULL ASAH2C 653365 genome.wustl.edu 37 10 48020456 48020456 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000426610 -1 known p.T350 0.992 127 0% 282 39.7% - - - - - HMMPfam_Ceramidase_alk ARHGAP22 58504 genome.wustl.edu 37 10 49662140 49662140 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021226.2 -1 validated p.Y286C 1.000 14 0% 11 54.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP DRGX 644168 genome.wustl.edu 37 10 50574403 50574403 + Missense_Mutation SNP C C T rs143541395 by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080520.1 -1 provisional p.V189I 1.000 42 0% 53 37.7% - - possibly_damaging(0.882) tolerated(0.32) neutral(0.368) NULL ARID5B 84159 genome.wustl.edu 37 10 63816977 63816977 + Missense_Mutation SNP G G C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032199.2 +1 validated p.E316D 1.000 95 0% 126 45.2% - - probably_damaging(0.985) deleterious(0.01) deleterious(0.838) HMMPfam_ARID,superfamily_ARID-like ARID5B 84159 genome.wustl.edu 37 10 63852568 63852568 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032199.2 +1 validated p.M1116V 1.000 129 0% 145 43.4% - - benign(0.02) deleterious(0) neutral(0.446) NULL DNA2 1763 genome.wustl.edu 37 10 70191980 70191980 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080449.1 -1 provisional p.V705A 1.000 261 0% 310 33.2% - - probably_damaging(0.996) tolerated(0.13) deleterious(0.714) superfamily_P-loop containing nucleoside triphosphate hydrolases TET1 80312 genome.wustl.edu 37 10 70426908 70426909 + Frame_Shift_Del DEL AT AT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AT AT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030625.2 +1 validated p.D1523fs 1.000:0.403 - - - - - - - - - NULL SUPV3L1 6832 genome.wustl.edu 37 10 70967668 70967668 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003171.3 +1 provisional p.H632 0.952 89 0% 119 36.1% - - - - - NULL COL13A1 1305 genome.wustl.edu 37 10 71631946 71631946 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001130103.1 +1 reviewed p.T127A 0.116 66 1.5% 54 38.9% - - benign(0.005) - - HMMPfam_Collagen COL13A1 1305 genome.wustl.edu 37 10 71690164 71690164 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000398975 +1 known p.A47V 0.998 8 0.000 15 0.400 - - - - - HMMPfam_Collagen SPOCK2 9806 genome.wustl.edu 37 10 73822881 73822881 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014767.2 -1 validated p.R344Q 1.000 9 0.000 10 0.700 - - probably_damaging(0.971) deleterious(0.03) deleterious(0.777) HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1 NUDT13 25961 genome.wustl.edu 37 10 74883974 74883974 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015901.4 +1 validated p.S121P 1.000 94 0% 112 30.4% - - probably_damaging(0.983) tolerated(0.16) deleterious(0.488) HMMPfam_NUDIX-like TTC18 118491 genome.wustl.edu 37 10 75016132 75016132 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145170.3 -1 validated p.I1094V 0.001 38 0% 45 42.2% - - benign(0) tolerated(0.49) neutral(0.011) HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like KIAA0913 23053 genome.wustl.edu 37 10 75559800 75559800 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015037.2 +1 validated p.Y1566C 1.000 57 0% 58 37.9% - - probably_damaging(1) tolerated(0.05) deleterious(0.845) NULL VCL 7414 genome.wustl.edu 37 10 75867085 75867085 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014000.2 +1 reviewed p.P844 0.982 96 0% 74 43.2% - - - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin VDAC2 7417 genome.wustl.edu 37 10 76980523 76980525 + In_Frame_Del DEL TCT TCT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 TCT TCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003375.3 +1 reviewed p.S128in_frame_del 1.000:1.000:0.978 - - - - - - - - - HMMPfam_Porin_3 PTEN 5728 genome.wustl.edu 37 10 89692924 89692924 + Nonsense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000371953 +1 known p.C136* 1.000 172 0% 282 47.2% - - - - - HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89717672 89717672 + Nonsense_Mutation SNP C C T rs121909219 byCluster TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000371953 +1 known p.R233* 0.984 210 0% 257 41.6% - - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 STAMBPL1 57559 genome.wustl.edu 37 10 90670745 90670745 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020799.2 +1 provisional p.Y133N 1.000 69 0% 121 32.2% - - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL BTAF1 9044 genome.wustl.edu 37 10 93768698 93768698 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003972.2 +1 validated p.H1309R 1.000 80 0% 115 33.9% - - probably_damaging(0.961) tolerated(0.1) deleterious(0.691) HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases CPEB3 22849 genome.wustl.edu 37 10 93904752 93904752 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014912.4 -1 validated p.R438H 1.000 193 0% 252 40.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_RNA-binding domain RBD CEP55 55165 genome.wustl.edu 37 10 95275264 95275264 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001127182.1 +1 validated p.T211A 0.954 135 0% 184 26.1% - - benign(0.004) tolerated(0.75) neutral(0.002) NULL FRA10AC1 118924 genome.wustl.edu 37 10 95445053 95445053 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145246.4 -1 reviewed p.N192I 1.000 189 0% 313 49.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Fra10Ac1 SLC35G1 159371 genome.wustl.edu 37 10 95660822 95660822 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001134658.1 +1 validated p.T225A 0.066 96 1% 110 30% - - benign(0.026) tolerated(0.46) neutral(0.013) NULL CC2D2B 387707 genome.wustl.edu 37 10 97769594 97769594 + Nonsense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001001732.3 +1 validated p.K12* 1.000 120 0% 190 37.9% - - - - - NULL RRP12 23223 genome.wustl.edu 37 10 99126586 99126586 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015179.3 -1 validated p.K1043R 1.000 104 0% 132 33.3% - - benign(0.046) tolerated(0.36) neutral(0.022) NULL SLC25A28 81894 genome.wustl.edu 37 10 101371088 101371088 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_031212.3 -1 validated p.Y205H 0.999 95 0% 96 39.6% - - possibly_damaging(0.884) tolerated(0.21) neutral(0.389) superfamily_Mitochondrial carrier,HMMPfam_Mito_carr KCNIP2 30819 genome.wustl.edu 37 10 103588951 103588951 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014591.4 -1 reviewed p.V92M 0.997 43 0% 51 47.1% - - possibly_damaging(0.461) deleterious(0.02) deleterious(0.534) NULL GBF1 8729 genome.wustl.edu 37 10 104130185 104130185 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004193.1 +1 provisional p.E1151D 0.998 193 0% 151 37.1% - - benign(0.004) tolerated(1) - NULL CNNM2 54805 genome.wustl.edu 37 10 104809546 104809546 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017649.3 +1 validated p.T568 0.054 81 0% 153 48.4% - - - - - HMMPfam_CBS TAF5 6877 genome.wustl.edu 37 10 105138180 105138180 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006951.3 +1 reviewed p.I329T 1.000 133 0% 103 45.6% - - possibly_damaging(0.887) deleterious(0.01) deleterious(0.752) HMMPfam_TFIID_90kDa PDCD11 22984 genome.wustl.edu 37 10 105178304 105178304 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014976.1 +1 validated p.V673 0.001 82 0% 65 33.8% - - - - - superfamily_Nucleic_acid_OB,HMMSmart_S1 SORCS3 22986 genome.wustl.edu 37 10 106918700 106918700 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014978.1 +1 reviewed p.S560 0.353 145 0% 198 35.9% - - - - - HMMSmart_VPS10,superfamily_SSF110296 ADRA2A 150 genome.wustl.edu 37 10 112838203 112838203 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000681.3 +1 reviewed p.I150T 1.000 8 0.000 17 0.294 - - possibly_damaging(0.863) deleterious(0) deleterious(0.778) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like HABP2 3026 genome.wustl.edu 37 10 115343075 115343075 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004132.3 +1 reviewed p.S399G 0.639 93 0% 93 36.6% - - benign(0) tolerated(0.12) neutral(0.261) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases MCMBP 79892 genome.wustl.edu 37 10 121612564 121612564 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024834.2 -1 validated p.A191V 0.873 252 0% 403 43.2% - - benign(0.042) tolerated(0.1) neutral(0.289) HMMPfam_DUF2044 SEC23IP 11196 genome.wustl.edu 37 10 121689254 121689254 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007190.2 +1 reviewed p.F817L 0.998 151 0% 192 34.9% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_DDHD PLEKHA1 59338 genome.wustl.edu 37 10 124183737 124183737 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001001974.1 +1 validated p.I235K 1.000 35 0% 32 59.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 HTRA1 5654 genome.wustl.edu 37 10 124266907 124266907 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002775.4 +1 reviewed p.L332 0.016 45 0% 36 22.2% - - - - - HMMPfam_Trypsin,superfamily_Pept_Ser_Cys CPXM2 119587 genome.wustl.edu 37 10 125528198 125528198 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198148.2 -1 validated p.N381 1.000 74 0% 66 43.9% - - - - - HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases OAT 4942 genome.wustl.edu 37 10 126089550 126089550 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000274.3 -1 reviewed p.L340V 0.929 39 0% 35 28.6% - - benign(0) tolerated(0.51) neutral(0.009) HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major MKI67 4288 genome.wustl.edu 37 10 129910495 129910495 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002417.4 -1 reviewed p.L624P 0.001 110 0% 104 44.2% - - benign(0) tolerated(0.06) neutral(0.323) NULL TCERG1L 256536 genome.wustl.edu 37 10 132944845 132944845 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_174937.3 -1 validated p.M371I 0.901 84 0% 69 36.2% - - benign(0.001) tolerated(0.22) neutral(0.042) HMMSmart_WW,superfamily_WW_Rsp5_WWP MRPL23 6150 genome.wustl.edu 37 11 1973408 1973408 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000429295 +1 known p.R59C 0.253 11 0% 24 58.3% - - - - - superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23 CARS 833 genome.wustl.edu 37 11 3039851 3039851 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001014437.1 -1 reviewed p.S508 1.000 87 0% 77 49.4% - - - - - HMMPfam_tRNA-synt_1e,superfamily_SSF52374 ZNF195 7748 genome.wustl.edu 37 11 3381419 3381419 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001130520.1 -1 validated p.K273 0.025 331 0% 455 33.6% - - - - - superfamily_C2H2 and C2HC zinc fingers NUP98 4928 genome.wustl.edu 37 11 3722065 3722065 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016320.4 -1 reviewed p.T1173A 0.997 97 0% 134 29.9% - - benign(0.179) tolerated(0.18) neutral(0.073) NULL OR51E1 143503 genome.wustl.edu 37 11 4673933 4673933 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152430.3 +1 validated p.H59 0.992 448 0% 526 34.8% - - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR51G2 81282 genome.wustl.edu 37 11 4935968 4935968 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005238.1 -1 provisional p.T309M 0.002 48 0% 55 12.7% - - possibly_damaging(0.938) deleterious(0.03) deleterious(0.748) superfamily_SSF81321 UBQLN3 50613 genome.wustl.edu 37 11 5530048 5530048 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017481.2 -1 reviewed p.I247 1.000 67 0% 81 43.2% - - - - - NULL TRIM5 85363 genome.wustl.edu 37 11 5701023 5701023 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033034.2 -1 reviewed p.F129L 0.000 131 0% 136 45.6% - - benign(0.029) tolerated(0.14) neutral(0.251) HMMPfam_zf-B_box,HMMSmart_SM00336 SMPD1 6609 genome.wustl.edu 37 11 6413367 6413367 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000543.3 +1 reviewed p.E358K 0.029 84 0% 62 41.9% - - benign(0.004) tolerated(0.22) neutral(0.042) HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases DNHD1 144132 genome.wustl.edu 37 11 6592966 6592966 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144666.2 +1 provisional p.Q4671R 1.000 73 1.4% 64 56.2% - - possibly_damaging(0.662) tolerated(0.51) neutral(0.243) HMMPfam_Dynein_heavy CTR9 9646 genome.wustl.edu 37 11 10789383 10789383 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014633.3 +1 provisional p.N573H 1.000 217 0% 391 46.3% - - possibly_damaging(0.598) deleterious(0) deleterious(0.651) superfamily_SSF48452 COPB1 1315 genome.wustl.edu 37 11 14512117 14512117 + Silent SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001144061.1 -1 reviewed p.A200 0.998 49 0% 53 47.2% - - - - - HMMPfam_Adaptin_N,superfamily_ARM-type_fold USH1C 10083 genome.wustl.edu 37 11 17519711 17519711 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153676.3 -1 reviewed p.G830R 1.000 69 0% 78 44.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ SPTY2D1 144108 genome.wustl.edu 37 11 18637275 18637275 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_194285.2 -1 validated p.E182D 0.981 204 0% 216 39.8% - - benign(0.39) deleterious(0) deleterious(0.570) NULL DEPDC7 91614 genome.wustl.edu 37 11 33050322 33050322 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001077242.1 +1 validated p.A256T 1.000 84 0% 81 32.1% - - possibly_damaging(0.765) deleterious(0.03) deleterious(0.648) NULL HIPK3 10114 genome.wustl.edu 37 11 33375017 33375017 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005734.3 +1 validated p.K1184R 1.000 212 0% 287 53.3% - - probably_damaging(0.989) tolerated(0.52) neutral(0.448) NULL TTC17 55761 genome.wustl.edu 37 11 43471655 43471655 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018259.5 +1 validated p.A937V 1.000 138 0.7% 193 40.4% - - probably_damaging(0.999) tolerated(0.07) deleterious(0.809) superfamily_SSF48452 PHF21A 51317 genome.wustl.edu 37 11 45959706 45959706 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001101802.1 -1 validated e13+2 1.000 49 0% 60 28.3% - - - - - - DGKZ 8525 genome.wustl.edu 37 11 46388933 46388933 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001105540.1 +1 reviewed p.S274N 1.000 3 0.000 7 0.857 - - benign(0.025) tolerated(0.24) neutral(0.038) NULL AMBRA1 55626 genome.wustl.edu 37 11 46569395 46569395 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017749.2 -1 validated p.T56A 1.000 66 0% 62 45.2% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_WD40 MYBPC3 4607 genome.wustl.edu 37 11 47353701 47353701 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000256.3 -1 reviewed p.F1246V 1.000 42 0% 35 37.1% - - possibly_damaging(0.62) deleterious(0.04) deleterious(0.565) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 TRIM48 79097 genome.wustl.edu 37 11 55035844 55035844 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024114.3 +1 validated p.Y192H 0.183 51 0% 103 25.2% - - benign(0) tolerated(0.52) neutral(0.009) NULL TNKS1BP1 85456 genome.wustl.edu 37 11 57069378 57069378 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033396.2 -1 validated p.V1625A 0.885 198 0% 196 39.3% - - benign(0.13) tolerated(0.05) neutral(0.356) NULL OR6Q1 219952 genome.wustl.edu 37 11 57799376 57799376 + Nonstop_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005186.2 +1 validated p.*318R 0.002 141 0% 138 42.8% - - - - - NULL MS4A15 219995 genome.wustl.edu 37 11 60538770 60538770 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098835.1 +1 validated p.I119V 1.000 29 0% 24 37.5% - - benign(0.205) tolerated(0.11) neutral(0.292) HMMPfam_CD20 TUT1 64852 genome.wustl.edu 37 11 62343616 62343616 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000463241 -1 known p.P565S 1.000 17 0% 12 66.7% - - - - - HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain SLC22A11 55867 genome.wustl.edu 37 11 64329573 64329573 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018484.2 +1 reviewed p.L199M 0.992 19 0% 15 46.7% - - probably_damaging(0.96) deleterious(0.02) deleterious(0.786) HMMPfam_MFS_1,superfamily_MFS general substrate transporter PYGM 5837 genome.wustl.edu 37 11 64518837 64518837 + Silent SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005609.2 -1 reviewed p.V643 0.981 26 0% 32 34.4% - - - - - HMMPfam_Phosphorylase,superfamily_SSF53756 FIBP 9158 genome.wustl.edu 37 11 65653893 65653893 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198897.1 -1 reviewed p.F138L 1.000 37 0% 53 32.1% - - probably_damaging(0.955) deleterious(0.01) deleterious(0.804) HMMPfam_FIBP CCDC87 55231 genome.wustl.edu 37 11 66359219 66359219 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018219.2 -1 validated p.P423Q 0.007 32 0% 51 35.3% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL RBM4 5936 genome.wustl.edu 37 11 66411237 66411237 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002896.2 +1 validated p.N243 1.000 83 0% 59 40.7% - - - - - NULL SYT12 91683 genome.wustl.edu 37 11 66811216 66811216 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_177963.3 +1 reviewed p.D243 0.023 54 0% 50 34% - - - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB KDM2A 22992 genome.wustl.edu 37 11 66888815 66888815 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012308.2 +1 reviewed p.Y10H 1.000 43 0% 86 43% - - probably_damaging(0.999) tolerated(0.27) deleterious(0.524) NULL MTL5 9633 genome.wustl.edu 37 11 68512544 68512544 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004923.3 -1 reviewed p.L222 0.999 35 0% 47 44.7% - - - - - NULL CCND1 595 genome.wustl.edu 37 11 69465889 69465889 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_053056.2 +1 reviewed p.C243R 1.000 4 0.000 4 1.000 - - probably_damaging(0.999) tolerated(0.12) deleterious(0.751) HMMPfam_Cyclin_C,superfamily_Cyclin-like SHANK2 22941 genome.wustl.edu 37 11 70348915 70348915 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012309.3 -1 reviewed p.T140N 0.998 17 0% 11 63.6% - - probably_damaging(0.974) tolerated(0.14) deleterious(0.665) NULL RNF121 55298 genome.wustl.edu 37 11 71707391 71707391 + RNA SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NR_024147.1 +1 reviewed NULL 0.210 29 0% 21 47.6% - - - - - - PPME1 51400 genome.wustl.edu 37 11 73936303 73936303 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016147.1 +1 provisional e5+2 1.000 9 0.000 20 0.350 - - - - - - INTS4 92105 genome.wustl.edu 37 11 77605371 77605371 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033547.3 -1 validated p.C751 1.000 25 0% 31 32.3% - - - - - NULL GAB2 9846 genome.wustl.edu 37 11 77961371 77961371 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_080491.2 -1 reviewed p.H151R 1.000 206 0% 228 32% - - benign(0.001) tolerated(0.83) neutral(0.001) NULL C11orf82 220042 genome.wustl.edu 37 11 82644892 82644892 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145018.3 +1 validated p.I838V 0.000 123 0% 153 31.4% - - benign(0) tolerated(1) - NULL FAT3 120114 genome.wustl.edu 37 11 92088323 92088323 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008781.2 +1 validated p.K1015N 1.000 82 0% 85 43.5% - - benign(0.104) tolerated(0.16) neutral(0.068) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92525978 92525978 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008781.2 +1 validated p.I1553V 1.000 115 0% 153 39.2% - - benign(0.001) tolerated(0.54) neutral(0.007) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like FAT3 120114 genome.wustl.edu 37 11 92570870 92570870 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008781.2 +1 validated p.G3422 0.298 68 0% 70 50% - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like HEPHL1 341208 genome.wustl.edu 37 11 93844211 93844211 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098672.1 +1 validated p.Y1063C 1.000 21 0% 26 61.5% - - probably_damaging(0.986) deleterious(0.05) deleterious(0.780) PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2 AMOTL1 154810 genome.wustl.edu 37 11 94533021 94533021 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_130847.2 +1 reviewed p.G222V 0.989 118 0% 97 53.6% - - probably_damaging(0.976) deleterious(0.04) deleterious(0.767) NULL EXPH5 23086 genome.wustl.edu 37 11 108383032 108383032 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015065.2 -1 validated p.N1068D 0.000 141 0% 160 37.5% - - benign(0.002) tolerated(0.5) neutral(0.010) NULL ALG9 79796 genome.wustl.edu 37 11 111739350 111739350 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024740.2 -1 reviewed p.H127R 1.000 114 0% 86 30.2% - - possibly_damaging(0.919) tolerated(0.35) neutral(0.390) HMMPfam_Glyco_transf_22 BCL9L 283149 genome.wustl.edu 37 11 118772137 118772137 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182557.2 -1 validated p.M772T 1.000 60 0% 47 46.8% - - possibly_damaging(0.794) deleterious(0.02) deleterious(0.681) NULL USP2 9099 genome.wustl.edu 37 11 119228903 119228903 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004205.4 -1 validated p.T433A 1.000 52 0% 41 39% - - possibly_damaging(0.598) deleterious(0.04) deleterious(0.556) HMMPfam_UCH,superfamily_Cysteine proteinases TECTA 7007 genome.wustl.edu 37 11 120998618 120998618 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005422.2 +1 reviewed p.C644 1.000 50 0% 44 40.9% - - - - - superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_TIL ZNF202 7753 genome.wustl.edu 37 11 123597046 123597046 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003455.2 -1 validated p.P536S 1.000 150 0% 164 11.6% - - probably_damaging(1) tolerated(0.1) deleterious(0.786) superfamily_C2H2 and C2HC zinc fingers OR8D1 283159 genome.wustl.edu 37 11 124180164 124180164 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001002917.1 -1 provisional p.S167P 0.000 115 0% 130 36.9% - - possibly_damaging(0.839) tolerated(0.14) deleterious(0.570) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ETS1 2113 genome.wustl.edu 37 11 128355972 128355972 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001143820.1 -1 validated p.Y202C 1.000 191 0% 243 32.1% - - probably_damaging(0.996) tolerated(0.13) deleterious(0.714) NULL NFRKB 4798 genome.wustl.edu 37 11 129744220 129744220 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006165.3 -1 validated p.S714 0.446 149 0% 151 39.7% - - - - - NULL IGSF9B 22997 genome.wustl.edu 37 11 133801986 133801986 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014987.1 -1 validated p.R364C 0.861 18 0% 16 68.8% - - possibly_damaging(0.66) deleterious(0.01) deleterious(0.639) HMMSmart_IG,superfamily_SSF48726 KDM5A 5927 genome.wustl.edu 37 12 443422 443422 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001042603.1 -1 reviewed p.I492S 1.000 252 0% 338 33.1% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00558,HMMPfam_JmjC WNK1 65125 genome.wustl.edu 37 12 988777 988777 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018979.3 +1 reviewed p.E804 1.000 106 0% 101 27.7% - - - - - NULL ERC1 23085 genome.wustl.edu 37 12 1289737 1289737 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178040.2 +1 reviewed p.K590R 1.000 97 0% 134 38.8% - - possibly_damaging(0.842) tolerated(0.29) neutral(0.351) superfamily_Prefoldin,HMMPfam_Cast KCNA5 3741 genome.wustl.edu 37 12 5154614 5154614 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002234.2 +1 reviewed p.L434P 1.000 70 1.4% 39 38.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels VWF 7450 genome.wustl.edu 37 12 6134844 6134844 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000552.3 -1 reviewed p.S1042P 0.032 41 0% 49 36.7% - - benign(0.01) deleterious(0.03) neutral(0.365) NULL SCNN1A 6337 genome.wustl.edu 37 12 6483859 6483859 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001038.5 -1 reviewed p.L31M 0.112 28 0% 25 56% - - possibly_damaging(0.924) tolerated(0.21) neutral(0.417) NULL NCAPD2 9918 genome.wustl.edu 37 12 6626837 6626837 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014865.3 +1 validated p.T466A 0.000 165 0% 163 33.1% - - benign(0) tolerated(0.72) neutral(0.002) superfamily_ARM repeat NCAPD2 9918 genome.wustl.edu 37 12 6631046 6631046 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014865.3 +1 validated p.K599N 0.000 126 0% 121 41.3% - - benign(0.002) tolerated(0.48) neutral(0.011) superfamily_ARM repeat CLEC4C 170482 genome.wustl.edu 37 12 7882333 7882333 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_130441.2 -1 reviewed p.F167 0.968 157 0% 146 49.3% - - - - - HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like A2ML1 144568 genome.wustl.edu 37 12 9020884 9020884 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144670.3 +1 validated p.V1331E 1.000 205 0% 225 34.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Alpha-macroglobulin receptor domain TAS2R13 50838 genome.wustl.edu 37 12 11061547 11061547 + Silent SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_023920.2 -1 reviewed p.P117 0.000 99 0% 158 34.2% - - - - - HMMPfam_TAS2R,superfamily_SSF81321 TAS2R50 259296 genome.wustl.edu 37 12 11138711 11138711 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_176890.2 -1 validated p.W250L 0.134 185 0% 266 42.5% - - benign(0.055) deleterious(0) neutral(0.448) HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like CREBL2 1389 genome.wustl.edu 37 12 12790643 12790643 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001310.2 +1 reviewed p.N118S 0.913 105 0% 122 29.5% - - benign(0) tolerated(0.31) neutral(0.027) NULL GPRC5A 9052 genome.wustl.edu 37 12 13065468 13065468 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003979.3 +1 reviewed p.S357G 0.022 330 0% 373 36.5% - - possibly_damaging(0.567) deleterious(0) deleterious(0.639) NULL WBP11 51729 genome.wustl.edu 37 12 14952594 14952594 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016312.2 -1 reviewed p.R55 1.000 38 0% 41 36.6% - - - - - HMMPfam_Wbp11 PTPRO 5800 genome.wustl.edu 37 12 15718556 15718556 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030667.1 +1 reviewed p.L914R 1.000 118 0% 206 30.6% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_(Phosphotyrosine protein) phosphatases II PYROXD1 79912 genome.wustl.edu 37 12 21614991 21614991 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024854.3 +1 validated p.C310 0.989 93 0% 123 45.5% - - - - - HMMPfam_Pyr_redox_2,superfamily_SSF51905 ALG10 84920 genome.wustl.edu 37 12 34179762 34179762 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032834.3 +1 reviewed p.A445V 0.857 185 0% 261 46.4% - - benign(0) tolerated(1) - NULL CPNE8 144402 genome.wustl.edu 37 12 39170084 39170084 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153634.2 -1 reviewed p.C143R 1.000 76 0% 140 33.6% - - benign(0.212) tolerated(0.31) neutral(0.048) superfamily_C2_CaLB MLL2 8085 genome.wustl.edu 37 12 49448123 49448123 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003482.3 -1 validated p.G159 1.000 42 0% 50 24% - - - - - NULL RACGAP1 29127 genome.wustl.edu 37 12 50386094 50386094 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001126103.1 -1 validated p.I504M 0.993 149 0% 190 37.4% - - possibly_damaging(0.796) deleterious(0.03) deleterious(0.663) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP DIP2B 57609 genome.wustl.edu 37 12 51112790 51112790 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173602.2 +1 validated p.H1005R 0.999 59 0% 55 23.6% - - possibly_damaging(0.868) deleterious(0.01) deleterious(0.743) superfamily_Acetyl-CoA synthetase-like SLC11A2 4891 genome.wustl.edu 37 12 51402294 51402294 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000617.2 -1 reviewed p.Y50N 1.000 186 0% 245 43.3% - - benign(0.406) deleterious(0.01) deleterious(0.536) NULL ACVR1B 91 genome.wustl.edu 37 12 52369209 52369209 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004302.3 +1 reviewed p.C84 1.000 73 0% 73 42.5% - - - - - HMMPfam_Activin_recp,superfamily_Snake toxin-like NR4A1 3164 genome.wustl.edu 37 12 52451230 52451230 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002135.3 +1 reviewed p.I486V 1.000 40 0% 30 36.7% - - benign(0.012) deleterious(0.03) neutral(0.365) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain TENC1 23371 genome.wustl.edu 37 12 53453883 53453883 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015319.2 +1 reviewed p.S830R 1.000 16 0% 12 58.3% - - benign(0.096) deleterious(0) neutral(0.452) NULL MAP3K12 7786 genome.wustl.edu 37 12 53880838 53880838 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006301.2 -1 reviewed p.Q80R 1.000 107 0% 60 35% - - possibly_damaging(0.872) tolerated(0.18) neutral(0.395) NULL HOXC5 3222 genome.wustl.edu 37 12 54428226 54428226 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018953.2 +1 reviewed p.R207G 1.000 47 0% 47 42.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1 OR6C65 403282 genome.wustl.edu 37 12 55794442 55794442 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005518.1 +1 provisional p.I44V 0.898 54 0% 69 30.4% - - possibly_damaging(0.913) tolerated(0.14) deleterious(0.614) HMMPfam_7tm_1,superfamily_SSF81321 DGKA 1606 genome.wustl.edu 37 12 56346620 56346620 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001345.4 +1 reviewed p.R616G 1.000 421 0% 349 36.7% - - benign(0.106) tolerated(0.35) neutral(0.029) HMMPfam_DAGK_acc,HMMSmart_SM00045 DGKA 1606 genome.wustl.edu 37 12 56346661 56346661 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001345.4 +1 reviewed p.L629 0.002 427 0% 370 33% - - - - - HMMPfam_DAGK_acc,HMMSmart_SM00045 MYL6B 140465 genome.wustl.edu 37 12 56547758 56547758 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002475.3 +1 reviewed p.K19I 0.897 20 0% 18 33.3% - - unknown(0) deleterious(0.01) - NULL SMARCC2 6601 genome.wustl.edu 37 12 56581036 56581036 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003075.3 -1 reviewed p.L56V 1.000 102 0% 165 44.8% - - probably_damaging(0.99) tolerated(0.07) deleterious(0.760) NULL BAZ2A 11176 genome.wustl.edu 37 12 56996500 56996500 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013449.3 -1 validated p.L1143 0.005 63 0% 54 40.7% - - - - - NULL HSD17B6 8630 genome.wustl.edu 37 12 57167808 57167808 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003725.2 +1 reviewed p.A58T 1.000 124 0% 134 10.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_adh_short,superfamily_NAD(P)-bd ZBTB39 9880 genome.wustl.edu 37 12 57398602 57398602 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014830.1 -1 provisional p.I34V 1.000 95 0% 170 36.5% - - probably_damaging(0.978) tolerated(0.06) deleterious(0.743) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB LRP1 4035 genome.wustl.edu 37 12 57594545 57594545 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002332.2 +1 reviewed p.F3391S 1.000 20 0% 21 57.1% - - benign(0.212) tolerated(0.25) neutral(0.057) HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module MBD6 114785 genome.wustl.edu 37 12 57920493 57920493 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052897.3 +1 validated p.S522N 0.997 15 0% 44 40.9% - - unknown(0) - - NULL KIF5A 3798 genome.wustl.edu 37 12 57960915 57960915 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004984.2 +1 reviewed p.T170A 1.000 117 0% 118 26.3% - - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases XPOT 11260 genome.wustl.edu 37 12 64825368 64825368 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007235.3 +1 reviewed p.C676Y 1.000 137 0% 211 36.5% - - probably_damaging(0.979) deleterious(0) deleterious(0.867) superfamily_ARM-type_fold HELB 92797 genome.wustl.edu 37 12 66717976 66717976 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033647.2 +1 reviewed p.I837M 1.000 132 0% 137 38% - - benign(0.044) tolerated(0.09) neutral(0.299) superfamily_P-loop containing nucleoside triphosphate hydrolases GRIP1 23426 genome.wustl.edu 37 12 66786573 66786573 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021150.3 -1 reviewed p.D666G 1.000 198 0% 238 33.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like ZFC3H1 196441 genome.wustl.edu 37 12 72057183 72057183 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144982.4 -1 validated p.G70S 1.000 49 0% 44 40.9% - - unknown(0) deleterious(0) - NULL KCNC2 3747 genome.wustl.edu 37 12 75444965 75444965 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_139137.2 -1 reviewed p.Y274H 1.000 143 0% 239 35.1% - - benign(0.003) tolerated(0.5) neutral(0.010) superfamily_Voltage-gated potassium channels GLIPR1L1 256710 genome.wustl.edu 37 12 75728562 75728562 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152779.2 +1 provisional p.V18 0.000 55 0% 95 12.6% - - - - - PatternScan_OPSIN,superfamily_SCP-like_extracellular LOC100127919 100127919 genome.wustl.edu 37 12 93429389 93429389 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_001719900.1 +1 model p.N117H 0.007 111 0% 138 46.4% - - - - - NULL C12orf63 374467 genome.wustl.edu 37 12 97114258 97114258 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198520.2 +1 validated p.C719R 0.086 30 0% 44 38.6% - - unknown(0) deleterious(0.04) - NULL APAF1 317 genome.wustl.edu 37 12 99080653 99080653 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181861.1 +1 reviewed e15+2 1.000 162 0% 200 34.5% - - - - - - PARPBP 55010 genome.wustl.edu 37 12 102589916 102589916 + Silent SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017915.2 +1 predicted p.P448 0.009 128 0% 215 37.7% - - - - - NULL STAB2 55576 genome.wustl.edu 37 12 104149440 104149440 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017564.9 +1 reviewed p.S2311G 0.977 85 1.2% 102 32.4% - - benign(0.054) deleterious(0.03) neutral(0.368) superfamily_BIgH3_FAS1 HCFC2 29915 genome.wustl.edu 37 12 104460053 104460053 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013320.2 +1 reviewed p.V91A 1.000 149 0% 162 43.2% - - possibly_damaging(0.888) deleterious(0) deleterious(0.792) superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2 ALDH1L2 160428 genome.wustl.edu 37 12 105462659 105462659 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001034173.3 -1 reviewed p.T144 0.995 116 0% 150 39.3% - - - - - HMMPfam_Formyl_trans_N,superfamily_Formyltransferase CRY1 1407 genome.wustl.edu 37 12 107398920 107398920 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004075.3 -1 validated p.I125T 1.000 84 0% 129 36.4% - - benign(0) tolerated(0.27) neutral(0.034) HMMPfam_DNA_photolyase,superfamily_Cryptochrome/photolyase N-terminal domain ACACB 32 genome.wustl.edu 37 12 109623531 109623531 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001093.3 +1 reviewed p.E656K 1.000 69 0% 87 37.9% - - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_Biotin_carb_C,superfamily_Rudiment single hybrid motif ACACB 32 genome.wustl.edu 37 12 109684008 109684008 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001093.3 +1 reviewed p.R1776G 0.024 100 0% 116 45.7% - - benign(0.012) tolerated(0.09) neutral(0.297) HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase C12orf51 283450 genome.wustl.edu 37 12 112610511 112610511 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001109662.2 -1 validated p.A3495T 0.321 25 0% 19 42.1% - - benign(0.033) - - NULL C12orf51 283450 genome.wustl.edu 37 12 112668575 112668575 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001109662.2 -1 validated p.A1662 0.568 28 0% 25 24% - - - - - NULL VSIG10 54621 genome.wustl.edu 37 12 118506327 118506328 + In_Frame_Ins INS - - TCC novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_019086.5 -1 validated p.475in_frame_insE 0.003:0.008 - - - - - - - - - NULL HSPB8 26353 genome.wustl.edu 37 12 119631534 119631534 + Silent SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014365.2 +1 reviewed p.V154 0.006 151 0% 118 31.4% - - - - - HMMPfam_HSP20,superfamily_HSP20-like chaperones ORAI1 84876 genome.wustl.edu 37 12 122064774 122064779 + In_Frame_Del DEL CCGCCA CCGCCA - rs141919534 byCluster;by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 CCGCCA CCGCCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032790.3 +1 reviewed p.PP46in_frame_del 0.716:0.710:0.709:0.897:0.997:0.999 - - - - - - - - - NULL MLXIP 22877 genome.wustl.edu 37 12 122625595 122625595 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000319080 +1 known p.L868P 1.000 19 0% 20 25% - - probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL KNTC1 9735 genome.wustl.edu 37 12 123062326 123062326 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014708.4 +1 reviewed p.D943E 0.023 92 0% 129 51.2% - - probably_damaging(0.98) tolerated(0.09) deleterious(0.720) NULL MPHOSPH9 10198 genome.wustl.edu 37 12 123647628 123647628 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022782.2 -1 validated p.S836P 1.000 73 0% 81 33.3% - - possibly_damaging(0.913) tolerated(0.05) deleterious(0.710) NULL C12orf65 91574 genome.wustl.edu 37 12 123741574 123741574 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001143905.1 +1 validated p.H166R 0.000 105 1% 116 31% - - unknown(0) deleterious(0) - NULL CDK2AP1 8099 genome.wustl.edu 37 12 123751745 123751745 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004642.2 -1 reviewed p.L47P 0.983 20 0% 25 24% - - benign(0) tolerated(0.18) neutral(0.056) HMMPfam_CDK2AP SBNO1 55206 genome.wustl.edu 37 12 123804544 123804544 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018183.3 -1 validated p.D900G 1.000 98 0% 111 46.8% - - probably_damaging(0.996) tolerated(0.2) deleterious(0.511) NULL DNAH10 196385 genome.wustl.edu 37 12 124382336 124382336 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_207437.3 +1 validated p.P2982 0.000 151 0% 165 10.9% - - - - - NULL DNAH10 196385 genome.wustl.edu 37 12 124401041 124401041 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_207437.3 +1 validated p.L3469P 1.000 47 0% 62 32.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL UBC 7316 genome.wustl.edu 37 12 125397699 125397699 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021009.4 -1 validated p.T207A 1.000 315 0% 299 41.5% - - benign(0.366) deleterious(0) deleterious(0.561) HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like UBC 7316 genome.wustl.edu 37 12 125397899 125397902 + Frame_Shift_Del DEL TCTT TCTT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 TCTT TCTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021009.4 -1 validated p.K139fs 1.000:1.000:0.583:0.998 - - - - - - - - - HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like RIMBP2 23504 genome.wustl.edu 37 12 130935764 130935764 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015347.4 -1 validated p.S143 1.000 46 0% 44 43.2% - - - - - NULL EP400 57634 genome.wustl.edu 37 12 132472311 132472311 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015409.3 +1 validated p.R761H 0.999 15 0% 22 63.6% - - unknown(0) - - NULL POLE 5426 genome.wustl.edu 37 12 133214612 133214612 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006231.2 -1 validated p.Y1889C 1.000 53 0% 45 40% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF1744 PSPC1 55269 genome.wustl.edu 37 13 20346594 20346594 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001042414.1 -1 validated p.H154 1.000 78 1.3% 126 42.9% - - - - - superfamily_RNA-binding domain RBD FLT3 2322 genome.wustl.edu 37 13 28609677 28609677 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004119.2 -1 reviewed p.N518D 0.228 189 0% 202 50.5% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL FRY 10129 genome.wustl.edu 37 13 32745401 32745401 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_023037.2 +1 validated p.N715K 0.000 50 0% 90 37.8% - - benign(0.005) tolerated(0.58) neutral(0.005) NULL SPG20 23111 genome.wustl.edu 37 13 36903584 36903584 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142294.1 -1 reviewed p.Q360R 0.374 277 0% 469 36.9% - - benign(0.002) tolerated(0.13) neutral(0.253) NULL PROSER1 80209 genome.wustl.edu 37 13 39587642 39587642 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_025138.3 -1 validated p.R583C 0.003 212 0% 260 36.5% - - benign(0.054) tolerated(0.19) neutral(0.053) NULL COG6 57511 genome.wustl.edu 37 13 40293483 40293483 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000422759 +1 known p.L487P 0.986 103 0% 149 35.6% - - - - - HMMPfam_COG6 TSC22D1 8848 genome.wustl.edu 37 13 45148708 45148708 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_183422.2 -1 validated p.Q501 0.000 59 0% 63 15.9% - - - - - NULL KCTD4 386618 genome.wustl.edu 37 13 45767958 45767958 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198404.2 -1 validated p.I249L 1.000 99 0% 123 36.6% - - benign(0.03) deleterious(0.01) neutral(0.407) NULL LRCH1 23143 genome.wustl.edu 37 13 47224449 47224449 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015116.2 +1 reviewed p.N141D 1.000 41 0% 56 57.1% - - possibly_damaging(0.845) deleterious(0.03) deleterious(0.689) HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like RB1 5925 genome.wustl.edu 37 13 48916840 48916841 + Frame_Shift_Del DEL AT AT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AT AT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000321.2 +1 reviewed p.I124fs 1.000:1.000 - - - - - - - - - NULL RB1 5925 genome.wustl.edu 37 13 49039185 49039185 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000321.2 +1 reviewed p.F755I 1.000 88 0% 134 46.3% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like CDADC1 81602 genome.wustl.edu 37 13 49829998 49829998 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000429346 +1 known p.D64G 0.747 55 0% 92 28.3% - - - - - NULL THSD1 55901 genome.wustl.edu 37 13 52952406 52952406 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018676.3 -1 reviewed p.A567T 0.119 161 0% 182 46.7% - - benign(0.001) tolerated(0.84) neutral(0.001) NULL OLFM4 10562 genome.wustl.edu 37 13 53624654 53624654 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006418.3 +1 reviewed p.K427 0.557 190 0% 228 10.5% - - - - - HMMPfam_OLF,HMMSmart_OLF TDRD3 81550 genome.wustl.edu 37 13 61102733 61102733 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030794.2 +1 validated p.S365 0.995 95 0% 156 35.9% - - - - - NULL BORA 79866 genome.wustl.edu 37 13 73319140 73319140 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024808.2 +1 validated p.E178G 1.000 151 0% 237 33.8% - - probably_damaging(0.956) tolerated(0.06) deleterious(0.722) NULL MYCBP2 23077 genome.wustl.edu 37 13 77764431 77764431 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015057.4 -1 validated p.N1332 0.997 47 0% 58 10.3% - - - - - HMMPfam_PHR DCT 1638 genome.wustl.edu 37 13 95114271 95114271 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001129889.1 -1 validated p.S346G 1.000 67 0% 63 11.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Tyrosinase,superfamily_Di-copper_centre SLC15A1 6564 genome.wustl.edu 37 13 99338468 99338468 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005073.3 -1 reviewed p.A637 0.111 28 0% 39 30.8% - - - - - superfamily_MFS general substrate transporter RASA3 22821 genome.wustl.edu 37 13 114792890 114792890 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007368.2 -1 reviewed p.Q193R 1.000 23 0% 13 46.2% - - benign(0.052) tolerated(0.4) neutral(0.019) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB UPF3A 65110 genome.wustl.edu 37 13 115067486 115067486 + Nonsense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_023011.2 +1 reviewed p.R430* 0.460 25 0% 23 47.8% - - - - - NULL RNASE10 338879 genome.wustl.edu 37 14 20978883 20978883 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001012975.1 +1 provisional p.I85V 0.000 102 0% 91 39.6% - - benign(0.003) tolerated(0.53) neutral(0.007) NULL LOC100288791 100288791 genome.wustl.edu 37 14 23311228 23311228 + Nonsense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_002343265.1 -1 model p.L239* 0.975 89 0% 83 32.5% - - benign(0.001) tolerated(0.08) neutral(0.300) NULL PSMB11 122706 genome.wustl.edu 37 14 23512120 23512120 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099780.1 +1 validated p.R229Q 0.994 23 0% 24 37.5% - - probably_damaging(0.962) tolerated(0.25) neutral(0.442) superfamily_SSF56235 TINF2 26277 genome.wustl.edu 37 14 24710454 24710454 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099274.1 -1 reviewed p.L155 0.443 325 0% 344 39.8% - - - - - NULL BAZ1A 11177 genome.wustl.edu 37 14 35243689 35243689 + Silent SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013448.2 -1 validated p.P947 1.000 80 0% 120 40.8% - - - - - NULL PNN 5411 genome.wustl.edu 37 14 39646669 39646669 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002687.3 +1 validated p.E103G 1.000 72 0% 83 25.3% - - possibly_damaging(0.842) deleterious(0) deleterious(0.766) HMMPfam_Pinin_SDK_N C14orf28 122525 genome.wustl.edu 37 14 45369876 45369877 + Frame_Shift_Del DEL CT CT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001017923.1 +1 validated p.L82fs 1.000:1.000 - - - - - - - - - NULL DNAAF2 55172 genome.wustl.edu 37 14 50092545 50092545 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018139.2 -1 reviewed p.S743 0.701 61 0% 78 42.3% - - - - - NULL NIN 51199 genome.wustl.edu 37 14 51226993 51226993 + Missense_Mutation SNP C C G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020921.3 -1 reviewed p.E661Q 0.113 80 0% 76 40.8% - - benign(0.049) tolerated(0.05) neutral(0.348) NULL NID2 22795 genome.wustl.edu 37 14 52481961 52481961 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007361.3 -1 validated p.R1021C 1.000 56 0% 56 12.5% - - probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain SOCS4 122809 genome.wustl.edu 37 14 55510863 55510863 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_080867.2 +1 reviewed p.S368 0.992 115 0% 117 48.7% - - - - - HMMSmart_SM00252,superfamily_SH2 domain SLC35F4 341880 genome.wustl.edu 37 14 58030940 58030943 + Frame_Shift_Del DEL CTCA CTCA - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 CTCA CTCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080455.1 -1 provisional p.S492fs 1.000:1.000:1.000:0.991 - - - - - - - - - NULL RHOJ 57381 genome.wustl.edu 37 14 63757668 63757668 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020663.3 +1 provisional p.I191L 0.999 87 0% 128 43% - - possibly_damaging(0.675) deleterious(0) deleterious(0.684) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases SYNE2 23224 genome.wustl.edu 37 14 64589028 64589028 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182914.2 +1 reviewed p.N4435 0.002 146 0% 193 44% - - - - - NULL SYNE2 23224 genome.wustl.edu 37 14 64619362 64619362 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182914.2 +1 reviewed p.A5240 0.000 91 0% 106 33% - - - - - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin RGS6 9628 genome.wustl.edu 37 14 72985221 72985221 + Silent SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004296.4 +1 validated p.G418 1.000 74 0% 68 39.7% - - - - - HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS C14orf45 80127 genome.wustl.edu 37 14 74531394 74531394 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_025057.2 +1 validated p.T528A 0.097 110 0% 147 29.9% - - benign(0) deleterious(0) neutral(0.445) NULL MLH3 27030 genome.wustl.edu 37 14 75506617 75506618 + Frame_Shift_Ins INS - - ATTGAATG novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001040108.1 -1 reviewed p.M1189fs 1.000:1.000 - - - - - - - - - NULL MLH3 27030 genome.wustl.edu 37 14 75506669 75506669 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001040108.1 -1 reviewed p.I1172N 1.000 40 0% 38 36.8% - - probably_damaging(0.998) tolerated(0.13) deleterious(0.727) NULL SEL1L 6400 genome.wustl.edu 37 14 81953766 81953766 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005065.4 -1 validated p.G534S 0.999 52 0% 76 42.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like GPR65 8477 genome.wustl.edu 37 14 88478157 88478157 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003608.3 +1 validated p.I322M 0.011 78 0% 104 32.7% - - benign(0) deleterious(0.01) neutral(0.406) NULL KCNK10 54207 genome.wustl.edu 37 14 88652421 88652421 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138317.2 -1 reviewed p.S364G 1.000 42 0% 23 52.2% - - probably_damaging(0.998) tolerated(0.13) deleterious(0.727) superfamily_Voltage-gated potassium channels EML5 161436 genome.wustl.edu 37 14 89083107 89083107 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_183387.2 -1 validated p.M1920T 1.000 87 0% 94 30.9% - - benign(0.121) deleterious(0.02) neutral(0.393) HMMSmart_SM00320,superfamily_WD40 repeat-like RAB42P1 646996 genome.wustl.edu 37 14 90358634 90358634 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000389290 +1 known p.L159P 0.981 11 0% 26 30.8% - - - - - HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases TRIP11 9321 genome.wustl.edu 37 14 92470420 92470420 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004239.3 -1 reviewed p.N1300 0.022 84 0% 99 28.3% - - - - - NULL ITPK1 3705 genome.wustl.edu 37 14 93542959 93542959 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142593.1 -1 validated p.R34Q 1.000 48 0% 53 54.7% - - benign(0.137) tolerated(0.59) neutral(0.016) HMMPfam_Ins134_P3_kin UNC79 57578 genome.wustl.edu 37 14 94046553 94046553 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020818.3 +1 validated p.I654T 1.000 109 0% 147 34.7% - - probably_damaging(0.959) deleterious(0.01) deleterious(0.808) NULL IFI27L2 83982 genome.wustl.edu 37 14 94594300 94594300 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032036.2 -1 validated p.I77F 0.045 70 0% 61 44.3% - - benign(0.042) tolerated(0.15) neutral(0.243) HMMPfam_Ifi-6-16 SERPINA4 5267 genome.wustl.edu 37 14 95034557 95034557 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006215.2 +1 provisional p.T339A 0.000 90 0% 99 36.4% - - benign(0.037) deleterious(0.01) neutral(0.408) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin DICER1 23405 genome.wustl.edu 37 14 95579533 95579533 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030621.3 -1 reviewed p.F646L 0.999 90 0% 117 29.9% - - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_dsRNA_bind CCNK 8812 genome.wustl.edu 37 14 99973448 99973448 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099402.1 +1 reviewed p.T361A 0.897 139 0% 181 33.7% - - unknown(0) tolerated(0.25) - NULL EML1 2009 genome.wustl.edu 37 14 100405650 100405650 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008707.1 +1 reviewed p.C789S 1.000 32 0% 27 44.4% - - probably_damaging(0.973) deleterious(0) deleterious(0.859) superfamily_WD40_like DEGS2 123099 genome.wustl.edu 37 14 100615443 100615443 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_206918.2 -1 reviewed p.F229 0.994 23 0% 14 64.3% - - - - - HMMPfam_FA_desaturase DYNC1H1 1778 genome.wustl.edu 37 14 102452685 102452685 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001376.4 +1 reviewed p.Q708R 1.000 112 0% 119 39.5% - - benign(0.019) tolerated(1) neutral(0.001) HMMPfam_DHC_N1 HSP90AA1 3320 genome.wustl.edu 37 14 102551160 102551161 + In_Frame_Ins INS - - TCT novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001017963.2 -1 validated p.402in_frame_insK 1.000:1.000 - - - - - - - - - HMMPfam_HSP90 MOK 5891 genome.wustl.edu 37 14 102718287 102718287 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014226.1 -1 provisional p.Y110C 1.000 80 0% 83 34.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZNF839 55778 genome.wustl.edu 37 14 102807772 102807772 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018335.3 +1 validated p.A680 0.000 45 0% 51 23.5% - - - - - NULL TNFAIP2 7127 genome.wustl.edu 37 14 103601627 103601627 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006291.2 +1 reviewed p.S632N 1.000 34 0% 47 48.9% - - benign(0.005) tolerated(1) - HMMPfam_Sec6 TDRD9 122402 genome.wustl.edu 37 14 104481084 104481084 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153046.2 +1 validated p.L710S 0.997 72 0% 80 37.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TDRD9 122402 genome.wustl.edu 37 14 104493207 104493207 + Silent SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153046.2 +1 validated p.A1071 0.000 117 0% 134 38.8% - - - - - NULL AHNAK2 113146 genome.wustl.edu 37 14 105410843 105410843 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138420.2 -1 validated p.R3649G 0.000 56 1.8% 99 22.2% - - benign(0.077) tolerated(0.43) neutral(0.019) NULL BTBD6 90135 genome.wustl.edu 37 14 105716288 105716288 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033271.2 +1 validated p.A171V 0.336 11 0% 14 85.7% - - benign(0) tolerated(0.46) neutral(0.012) NULL HERC2P2 400322 genome.wustl.edu 37 15 23310009 23310009 + RNA SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NR_002824.3 -1 validated NULL 1.000 161 0% 190 8.4% - - - - - - OCA2 4948 genome.wustl.edu 37 15 28273188 28273188 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000275.2 -1 reviewed p.V115A 0.000 76 0% 62 32.3% - - benign(0.141) deleterious(0) neutral(0.457) NULL RYR3 6263 genome.wustl.edu 37 15 34153353 34153353 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001036.3 +1 validated p.L4813 0.985 16 0% 20 45% - - - - - NULL MEIS2 4212 genome.wustl.edu 37 15 37385801 37385801 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_170675.2 -1 reviewed p.S207F 1.000 80 0% 92 46.7% - - possibly_damaging(0.455) deleterious(0.04) deleterious(0.498) NULL TMCO5A 145942 genome.wustl.edu 37 15 38243323 38243323 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152453.2 +1 provisional p.D252G 0.995 198 0% 296 40.5% - - possibly_damaging(0.921) deleterious(0) deleterious(0.816) NULL BAHD1 22893 genome.wustl.edu 37 15 40751549 40751549 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014952.3 +1 validated p.S296P 0.171 29 0% 30 33.3% - - benign(0) tolerated(0.3) neutral(0.029) NULL CHST14 113189 genome.wustl.edu 37 15 40764199 40764199 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_130468.3 +1 reviewed p.F263L 1.000 39 0% 59 44.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfotransfer_2 CASC5 57082 genome.wustl.edu 37 15 40911208 40911208 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_170589.3 +1 validated p.E151G 1.000 76 0% 105 39% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TP53BP1 7158 genome.wustl.edu 37 15 43748819 43748821 + In_Frame_Del DEL CCT CCT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 CCT CCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001141980.1 -1 validated p.E662in_frame_del 0.998:0.998:1.000 - - - - - - - - - NULL UNC13C 440279 genome.wustl.edu 37 15 54307372 54307372 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080534.1 +1 provisional p.M758V 0.144 104 0% 85 51.8% - - benign(0.006) deleterious(0.01) neutral(0.406) NULL RORA 6095 genome.wustl.edu 37 15 60806817 60806817 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_134260.2 -1 reviewed p.D174G 1.000 178 0% 270 44.4% - - probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain) LACTB 114294 genome.wustl.edu 37 15 63433623 63433623 + Silent SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032857.2 +1 reviewed p.G421 1.000 196 0% 179 44.7% - - - - - HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like CA12 771 genome.wustl.edu 37 15 63632938 63632938 + Silent SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001218.3 -1 reviewed p.L190 0.277 109 0% 86 31.4% - - - - - HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase USP3 9960 genome.wustl.edu 37 15 63866345 63866345 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006537.2 +1 validated p.F337L 1.000 54 0% 96 31.2% - - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_UCH,superfamily_SSF54001 IGDCC3 9543 genome.wustl.edu 37 15 65621360 65621360 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004884.3 -1 validated p.G778S 0.019 22 0% 14 64.3% - - probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL DIS3L 115752 genome.wustl.edu 37 15 66618192 66618192 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133375.3 +1 validated p.E481G 0.998 225 0% 230 40.4% - - probably_damaging(0.98) deleterious(0.01) deleterious(0.830) HMMPfam_RNB ARIH1 25820 genome.wustl.edu 37 15 72875619 72875619 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005744.3 +1 validated p.Y554H 1.000 107 0% 119 37% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PML 5371 genome.wustl.edu 37 15 74337160 74337162 + In_Frame_Del DEL GAA GAA - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033238.2 +1 reviewed p.K822in_frame_del 0.849:0.910:0.929 - - - - - - - - - NULL FBXO22 26263 genome.wustl.edu 37 15 76222412 76222412 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012170.2 +1 reviewed p.D272E 0.001 193 0% 240 40.8% - - unknown(0) - - NULL CTSH 1512 genome.wustl.edu 37 15 79221825 79221825 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004390.3 -1 reviewed p.S187G 1.000 32 0% 36 38.9% - - possibly_damaging(0.501) deleterious(0.02) deleterious(0.550) HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases FAM154B 283726 genome.wustl.edu 37 15 82574757 82574757 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008226.1 +1 predicted p.H184R 1.000 153 0% 191 42.4% - - probably_damaging(0.989) deleterious(0.03) deleterious(0.804) NULL SLC28A1 9154 genome.wustl.edu 37 15 85438239 85438239 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004213.3 +1 validated p.T116A 0.499 72 0% 80 37.5% - - possibly_damaging(0.908) tolerated(0.05) deleterious(0.707) NULL SLC28A1 9154 genome.wustl.edu 37 15 85448848 85448848 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004213.3 +1 validated p.F228I 0.983 65 0% 66 45.5% - - benign(0.118) tolerated(0.35) neutral(0.030) HMMPfam_Nucleos_tra2_N SLC28A1 9154 genome.wustl.edu 37 15 85488017 85488017 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004213.3 +1 validated p.V598A 0.000 173 0% 175 33.1% - - benign(0) tolerated(0.37) neutral(0.019) NULL FANCI 55215 genome.wustl.edu 37 15 89844621 89844621 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001113378.1 +1 reviewed p.L985R 0.687 95 0% 169 35.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RHCG 51458 genome.wustl.edu 37 15 90021123 90021123 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016321.1 -1 provisional p.L307P 1.000 24 0% 25 72% - - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909) ZNF710 374655 genome.wustl.edu 37 15 90611786 90611786 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198526.2 +1 validated p.S473G 1.000 82 0% 87 40.2% - - possibly_damaging(0.685) tolerated(0.06) deleterious(0.567) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 FURIN 5045 genome.wustl.edu 37 15 91420241 91420241 + Nonsense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002569.2 +1 reviewed p.L163* 1.000 28 0% 34 26.5% - - - - - HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53 LYSMD4 145748 genome.wustl.edu 37 15 100269520 100269520 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152449.2 -1 validated p.P234 0.480 160 0.6% 155 32.3% - - - - - NULL ADAMTS17 170691 genome.wustl.edu 37 15 100533337 100533337 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_139057.2 -1 reviewed p.C955 0.960 42 0% 33 33.3% - - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat SRRM2 23524 genome.wustl.edu 37 16 2819161 2819163 + In_Frame_Del DEL TCT TCT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 TCT TCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016333.3 +1 validated p.S2636in_frame_del 0.905:0.891:0.109 - - - - - - - - - NULL ZG16B 124220 genome.wustl.edu 37 16 2882073 2882073 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145252.2 +1 validated p.G180 0.000 51 0% 65 40% - - - - - superfamily_Mannose-bd_lectin CREBBP 1387 genome.wustl.edu 37 16 3786728 3786728 + Nonsense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004380.2 -1 reviewed p.K1495* 0.999 89 1.1% 103 34% - - - - - HMMPfam_DUF906 CREBBP 1387 genome.wustl.edu 37 16 3786792 3786792 + Frame_Shift_Del DEL G G - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004380.2 -1 reviewed p.C1474fs 1.000 - - - - - - - - - HMMPfam_DUF906 NMRAL1 57407 genome.wustl.edu 37 16 4511945 4511945 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020677.3 -1 provisional p.Y246H 0.989 37 0% 48 27.1% - - possibly_damaging(0.513) deleterious(0) deleterious(0.617) superfamily_NAD(P)-bd HMOX2 3163 genome.wustl.edu 37 16 4555578 4555578 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001127204.1 +1 reviewed p.N18S 0.361 14 0% 16 25% - - benign(0) tolerated(0.5) neutral(0.010) NULL ENSG00000221809 0 genome.wustl.edu 37 16 5313276 5313276 + RNA SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000408882 -1 novel NULL 0.017 100 0% 122 35.2% - - - - - - RBFOX1 54715 genome.wustl.edu 37 16 7102090 7102090 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142334.1 +1 reviewed p.E6 1.000 47 0% 40 45% - - - - - NULL RBFOX1 54715 genome.wustl.edu 37 16 7647385 7647385 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145891.2 +1 reviewed p.T212A 1.000 36 0% 45 37.8% - - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) superfamily_SSF54928 SNN 8303 genome.wustl.edu 37 16 11770106 11770106 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003498.5 +1 validated p.Q64R 1.000 13 0% 20 35% - - possibly_damaging(0.478) deleterious(0.05) deleterious(0.503) HMMPfam_SNN_cytoplasm TXNDC11 51061 genome.wustl.edu 37 16 11781721 11781721 + Silent SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015914.5 -1 provisional p.T715 0.984 22 0% 25 48% - - - - - superfamily_Thiordxn-like_fd KIAA0430 9665 genome.wustl.edu 37 16 15711200 15711200 + Nonsense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014647.3 -1 validated p.Y971* 1.000 272 0% 293 12.3% - - - - - NULL TMC5 79838 genome.wustl.edu 37 16 19475197 19475197 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001105248.1 +1 validated p.V446I 1.000 271 0% 300 45.7% - - possibly_damaging(0.799) tolerated(0.18) neutral(0.357) NULL TMC5 79838 genome.wustl.edu 37 16 19488819 19488819 + Silent SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001105248.1 +1 validated p.T716 0.000 262 0% 217 34.6% - - - - - NULL RBBP6 5930 genome.wustl.edu 37 16 24573169 24573169 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006910.4 +1 reviewed p.T326A 1.000 170 0% 193 40.4% - - benign(0.181) deleterious(0.04) neutral(0.365) HMMPfam_U-box,superfamily_RING/U-box SBK1 388228 genome.wustl.edu 37 16 28330370 28330370 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001024401.2 +1 provisional p.F94Y 1.000 154 0% 258 34.1% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase TAOK2 9344 genome.wustl.edu 37 16 29997696 29997696 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016151.2 +1 validated p.T701 0.968 49 0% 50 60% - - - - - NULL TAOK2 9344 genome.wustl.edu 37 16 29997828 29997828 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016151.2 +1 validated p.V745 1.000 129 0% 79 34.2% - - - - - NULL DOC2A 8448 genome.wustl.edu 37 16 30018158 30018158 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003586.2 -1 reviewed p.A276T 1.000 42 0% 21 47.6% - - probably_damaging(0.987) tolerated(0.18) deleterious(0.492) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB PPP4C 5531 genome.wustl.edu 37 16 30094805 30094805 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002720.1 +1 provisional p.R132C 1.000 75 0% 78 42.3% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases FBRS 64319 genome.wustl.edu 37 16 30680891 30680891 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001105079.1 +1 validated p.A436 1.000 10 0% 42 59.5% - - - - - NULL HSD3B7 80270 genome.wustl.edu 37 16 30999488 30999488 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_025193.3 +1 reviewed p.T365M 0.000 9 0.000 13 0.385 - - possibly_damaging(0.95) tolerated(0.08) deleterious(0.694) NULL STX1B 112755 genome.wustl.edu 37 16 31004724 31004724 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052874.3 -1 validated p.S207G 1.000 76 0% 86 34.9% - - benign(0.345) deleterious(0.01) deleterious(0.515) HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins FUS 2521 genome.wustl.edu 37 16 31195222 31195222 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004960.3 +1 reviewed p.T78 0.007 71 0% 76 43.4% - - - - - NULL MYLK3 91807 genome.wustl.edu 37 16 46761284 46761284 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182493.2 -1 validated p.D593V 0.999 62 0% 54 37% - - possibly_damaging(0.668) deleterious(0.04) deleterious(0.585) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ENSG00000247487 0 genome.wustl.edu 37 16 48382261 48382261 + RNA SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000501305 -1 known NULL 0.000 52 0% 73 32.9% - - - - - - RBL2 5934 genome.wustl.edu 37 16 53488714 53488714 + Frame_Shift_Del DEL G G - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005611.3 +1 validated p.V381fs 1.000 - - - - - - - - - NULL NLRC5 84166 genome.wustl.edu 37 16 57092907 57092907 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032206.3 +1 validated p.Q1285R 0.978 548 0.2% 600 11.7% - - possibly_damaging(0.822) tolerated(0.3) neutral(0.340) HMMSmart_SM00368,superfamily_RNI-like ARL2BP 23568 genome.wustl.edu 37 16 57286138 57286138 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012106.3 +1 reviewed p.S151P 0.865 70 0% 70 34.3% - - possibly_damaging(0.916) deleterious(0.02) deleterious(0.750) NULL CMTM4 146223 genome.wustl.edu 37 16 66657328 66657328 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178818.2 -1 reviewed p.A147 0.250 22 0% 24 16.7% - - - - - HMMPfam_MARVEL EXOC3L1 283849 genome.wustl.edu 37 16 67220774 67220774 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178516.3 -1 validated p.Q391R 0.997 50 0% 35 45.7% - - possibly_damaging(0.513) tolerated(0.27) neutral(0.206) HMMPfam_Sec6 EDC4 23644 genome.wustl.edu 37 16 67914624 67914624 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014329.3 +1 validated p.R754 0.991 152 0% 143 34.3% - - - - - NULL SLC12A4 6560 genome.wustl.edu 37 16 67982045 67982045 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005072.4 -1 validated p.Y589C 1.000 14 0% 13 76.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AA_permease TMCO7 79613 genome.wustl.edu 37 16 68901069 68901069 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024562.1 +1 validated p.M314L 0.992 164 0% 212 42% - - possibly_damaging(0.651) tolerated(0.34) neutral(0.252) NULL HAS3 3038 genome.wustl.edu 37 16 69143689 69143689 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005329.2 +1 reviewed p.Y131H 1.000 12 0% 14 28.6% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF53448 NFAT5 10725 genome.wustl.edu 37 16 69681398 69681399 + Frame_Shift_Ins INS - - AT novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138713.2 +1 reviewed p.F243fs 1.000:1.000 - - - - - - - - - NULL SF3B3 23450 genome.wustl.edu 37 16 70602200 70602200 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012426.4 +1 reviewed p.Y989 0.979 106 0% 102 37.3% - - - - - HMMPfam_CPSF_A ZFHX3 463 genome.wustl.edu 37 16 72993669 72993669 + Missense_Mutation SNP C C A rs34511490 TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006885.3 -1 reviewed p.V126L 1.000 24 0% 22 45.5% - - unknown(0) - - NULL MON1B 22879 genome.wustl.edu 37 16 77228363 77228363 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014940.2 +1 validated p.R203C 0.996 181 0% 210 12.9% - - probably_damaging(0.991) tolerated(0.17) deleterious(0.503) HMMPfam_Mon1 WWOX 51741 genome.wustl.edu 37 16 79245713 79245713 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000402655 +1 known p.W206C 0.001 40 0% 51 49% - - unknown(0) deleterious(0) - NULL CMIP 80790 genome.wustl.edu 37 16 81735398 81735398 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198390.2 +1 validated p.K630R 1.000 32 0% 25 40% - - benign(0.02) tolerated(0.25) neutral(0.038) NULL MBTPS1 8720 genome.wustl.edu 37 16 84087942 84087942 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000347334 -1 known p.R665M 0.000 13 0.000 6 0.667 - - - - - NULL MBTPS1 8720 genome.wustl.edu 37 16 84108231 84108231 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003791.2 -1 reviewed p.M522L 1.000 77 0% 63 39.7% - - benign(0.002) tolerated(0.16) neutral(0.059) NULL MTHFSD 64779 genome.wustl.edu 37 16 86575317 86575317 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022764.2 -1 validated p.I222V 0.995 19 0% 26 26.9% - - possibly_damaging(0.613) tolerated(0.18) neutral(0.269) superfamily_SSF100950 ZCCHC14 23174 genome.wustl.edu 37 16 87446721 87446721 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015144.2 -1 validated p.S425G 1.000 26 0% 29 20.7% - - unknown(0) tolerated(0.3) - NULL KLHDC4 54758 genome.wustl.edu 37 16 87742009 87742009 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017566.3 -1 validated p.E504A 0.188 28 0% 29 44.8% - - unknown(0) tolerated(0.19) - NULL C16orf55 124045 genome.wustl.edu 37 16 89735763 89735763 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153025.1 +1 predicted p.A93V 0.425 78 0% 69 37.7% - - possibly_damaging(0.915) deleterious(0) deleterious(0.811) NULL RPA1 6117 genome.wustl.edu 37 17 1782921 1782921 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002945.3 +1 validated p.E340 1.000 216 0% 224 51.3% - - - - - superfamily_Nucleic acid-binding proteins METTL16 79066 genome.wustl.edu 37 17 2344825 2344825 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024086.3 -1 validated p.C253R 1.000 21 0% 42 50% - - benign(0.156) tolerated(0.28) neutral(0.045) HMMPfam_Methyltransf_10 ANKFY1 51479 genome.wustl.edu 37 17 4098277 4098277 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016376.3 -1 validated p.A456 0.010 63 0% 47 46.8% - - - - - superfamily_ANK ZMYND15 84225 genome.wustl.edu 37 17 4648584 4648584 + Silent SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001136046.1 +1 provisional p.V657 1.000 66 0% 61 9.8% - - - - - NULL USP6 9098 genome.wustl.edu 37 17 5072305 5072305 + Nonsense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004505.2 +1 validated p.K1158* 1.000 108 0% 125 41.6% - - - - - HMMPfam_UCH,superfamily_Cysteine proteinases TP53 7157 genome.wustl.edu 37 17 7578458 7578458 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000546.4 -1 reviewed p.R158C 0.981 88 0% 82 45.1% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_p53-like transcription factors,HMMPfam_P53 CHD3 1107 genome.wustl.edu 37 17 7814976 7814976 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000439235 +1 known p.A369V 1.000 35 0% 42 54.8% - - unknown(0) - - NULL CNTROB 116840 genome.wustl.edu 37 17 7852725 7852725 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000380262 +1 known p.R892H 1.000 134 1.5% 112 40.2% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL C17orf59 54785 genome.wustl.edu 37 17 8092635 8092635 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017622.2 -1 validated p.V275A 1.000 20 0% 17 29.4% - - possibly_damaging(0.888) deleterious(0) deleterious(0.792) HMMPfam_DUF2365 PFAS 5198 genome.wustl.edu 37 17 8158377 8158377 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012393.2 +1 reviewed p.I104T 0.998 39 0% 28 32.1% - - benign(0) tolerated(0.06) neutral(0.323) superfamily_PurS-like NDEL1 81565 genome.wustl.edu 37 17 8349146 8349146 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030808.3 +1 reviewed p.D68 1.000 188 0% 219 36.1% - - - - - NULL MYH10 4628 genome.wustl.edu 37 17 8395626 8395626 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005964.1 -1 validated p.V1523M 1.000 76 0% 70 41.4% - - probably_damaging(0.991) tolerated(0.08) deleterious(0.744) HMMPfam_Myosin_tail_1,superfamily_Prefoldin MYH4 4622 genome.wustl.edu 37 17 10348569 10348569 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017533.2 -1 validated p.K1760N 1.000 199 0% 258 50.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_tail_1 MYH4 4622 genome.wustl.edu 37 17 10352035 10352035 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017533.2 -1 validated p.E1477 1.000 119 0% 167 45.5% - - - - - HMMPfam_Myosin_tail_1 TRPV2 51393 genome.wustl.edu 37 17 16335418 16335418 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016113.3 +1 reviewed p.L598S 1.000 67 0% 50 34% - - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Ion_trans COPS3 8533 genome.wustl.edu 37 17 17165363 17165363 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003653.2 -1 reviewed p.Y227H 1.000 81 0% 83 36.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL C17orf39 79018 genome.wustl.edu 37 17 17962207 17962207 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024052.4 +1 validated p.Y211C 1.000 40 0% 32 31.2% - - probably_damaging(0.996) deleterious(0.04) deleterious(0.810) HMMPfam_Vac_ImportDeg LLGL1 3996 genome.wustl.edu 37 17 18140155 18140155 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004140.3 +1 reviewed p.C505S 1.000 6 0.000 14 0.357 - - benign(0.002) tolerated(0.88) - superfamily_WD40 repeat-like TOP3A 7156 genome.wustl.edu 37 17 18206019 18206019 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004618.3 -1 reviewed p.V173A 1.000 53 0% 55 32.7% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Toprim ULK2 9706 genome.wustl.edu 37 17 19689302 19689302 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142610.1 -1 reviewed p.S733 0.997 42 0% 50 34% - - - - - NULL ULK2 9706 genome.wustl.edu 37 17 19700871 19700871 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142610.1 -1 reviewed p.P549 0.395 66 0% 74 44.6% - - - - - NULL TMEM199 147007 genome.wustl.edu 37 17 26686380 26686380 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152464.1 +1 provisional p.L110 1.000 26 0% 21 28.6% - - - - - NULL KIAA0100 9703 genome.wustl.edu 37 17 26961966 26961966 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014680.2 -1 validated p.V880A 1.000 184 0% 224 34.4% - - benign(0.046) tolerated(0.39) neutral(0.018) NULL KIAA0100 9703 genome.wustl.edu 37 17 26962602 26962602 + Nonsense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014680.2 -1 validated p.L668* 0.982 58 0% 51 33.3% - - - - - NULL KIAA0100 9703 genome.wustl.edu 37 17 26964176 26964176 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014680.2 -1 validated p.V595A 0.997 40 0% 47 36.2% - - benign(0) tolerated(0.38) neutral(0.018) NULL RPL23A 6147 genome.wustl.edu 37 17 27047808 27047810 + In_Frame_Del DEL AAG AAG - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AAG AAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000984.5 +1 reviewed p.K39in_frame_del 1.000:1.000:1.000 - - - - - - - - - HMMPfam_Ribosomal_L23eN C17orf63 55731 genome.wustl.edu 37 17 27086641 27086641 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001077498.1 -1 validated p.I112M 0.999 20 0% 29 44.8% - - possibly_damaging(0.931) deleterious(0.04) deleterious(0.726) NULL FLOT2 2319 genome.wustl.edu 37 17 27207792 27207792 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004475.2 -1 reviewed p.N396T 1.000 69 0% 67 26.9% - - benign(0) tolerated(1) - NULL EFCAB5 374786 genome.wustl.edu 37 17 28380790 28380790 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198529.3 +1 validated p.Q606H 0.000 444 0% 495 30.5% - - probably_damaging(0.964) deleterious(0.03) deleterious(0.771) superfamily_EF-hand CRLF3 51379 genome.wustl.edu 37 17 29119552 29119552 + Missense_Mutation SNP G G C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015986.3 -1 validated p.R289G 1.000 250 0% 272 33.5% - - probably_damaging(1) tolerated(0.67) deleterious(0.502) NULL SLFN5 162394 genome.wustl.edu 37 17 33588006 33588006 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_144975.3 +1 validated p.P343 0.115 93 1.1% 122 36.1% - - - - - NULL ACACA 31 genome.wustl.edu 37 17 35616397 35616397 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198834.1 -1 reviewed p.Y462C 1.000 123 0% 157 40.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CPSase_L_D2,superfamily_SSF56059 TADA2A 6871 genome.wustl.edu 37 17 35825651 35825651 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133439.2 +1 reviewed p.W277R 0.990 84 0% 90 28.9% - - benign(0) deleterious(0) neutral(0.445) NULL CDC6 990 genome.wustl.edu 37 17 38457742 38457742 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001254.3 +1 reviewed p.V492A 1.000 157 0% 167 38.3% - - possibly_damaging(0.635) deleterious(0) deleterious(0.666) HMMPfam_Cdc6_C,superfamily_SSF46785 CCR7 1236 genome.wustl.edu 37 17 38711262 38711262 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001838.2 -1 reviewed p.N290S 0.941 106 0% 113 35.4% - - benign(0.004) tolerated(0.43) neutral(0.013) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like KRTAP9-2 83899 genome.wustl.edu 37 17 39382914 39382914 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_031961.2 +1 reviewed p.H3R 0.629 165 0% 201 36.8% - - unknown(0) tolerated(0.24) - HMMPfam_Keratin_B2 KRT9 3857 genome.wustl.edu 37 17 39726462 39726462 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000226.3 -1 reviewed p.L218P 0.000 184 0% 169 36.7% - - possibly_damaging(0.919) tolerated(0.11) deleterious(0.641) HMMPfam_Filament KRT17 3872 genome.wustl.edu 37 17 39777034 39777034 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000422.2 -1 reviewed p.L353P 1.000 63 0% 40 42.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament TTC25 83538 genome.wustl.edu 37 17 40117322 40117322 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000377543 +1 known p.R614G 0.322 89 0% 79 38% - - - - - NULL KAT2A 2648 genome.wustl.edu 37 17 40266936 40266936 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021078.2 -1 validated p.S665P 1.000 98 0% 70 35.7% - - possibly_damaging(0.484) tolerated(0.15) neutral(0.401) NULL STAT3 6774 genome.wustl.edu 37 17 40500471 40500471 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_139276.2 -1 reviewed p.Y22H 1.000 92 0% 114 37.7% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain TUBG1 7283 genome.wustl.edu 37 17 40766526 40766526 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001070.4 +1 reviewed p.L337 1.000 75 1.3% 50 48% - - - - - superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C BECN1 8678 genome.wustl.edu 37 17 40970645 40970645 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003766.3 -1 validated p.P135 0.010 99 0% 69 36.2% - - - - - HMMPfam_APG6 AARSD1 80755 genome.wustl.edu 37 17 41106908 41106908 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001136042.2 -1 validated p.V487A 1.000 109 0% 119 32.8% - - benign(0.245) tolerated(0.22) neutral(0.067) NULL DHX8 1659 genome.wustl.edu 37 17 41585277 41585277 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004941.1 +1 reviewed p.I737T 1.000 261 0% 351 45.3% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_DEXDc,superfamily_SSF52540 MPP2 4355 genome.wustl.edu 37 17 41957188 41957188 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005374.3 -1 reviewed p.A439T 0.003 63 0% 53 43.4% - - benign(0.018) tolerated(0.56) neutral(0.007) HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases EFTUD2 9343 genome.wustl.edu 37 17 42953317 42953317 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004247.3 -1 validated p.V285A 1.000 210 0% 218 31.7% - - possibly_damaging(0.704) deleterious(0.03) deleterious(0.618) HMMPfam_GTP_EFTU,superfamily_SSF52540 MAP3K14 9020 genome.wustl.edu 37 17 43362193 43362193 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000344686 -1 known p.C425R 1.000 7 0.000 6 0.667 - - probably_damaging(0.989) deleterious(0.04) deleterious(0.788) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase SP6 80320 genome.wustl.edu 37 17 45924969 45924969 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_199262.2 -1 validated p.R276H 1.000 23 0% 21 23.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers VEZF1 7716 genome.wustl.edu 37 17 56056604 56056604 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007146.2 -1 validated p.Q349 0.934 91 7.7% 143 21% - - - - - NULL HSF5 124535 genome.wustl.edu 37 17 56557627 56557627 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080439.1 -1 provisional p.G184 1.000 80 0% 107 35.5% - - - - - HMMPfam_HSF_DNA-bind HEATR6 63897 genome.wustl.edu 37 17 58147117 58147117 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022070.4 -1 validated p.P298 0.986 63 0% 81 33.3% - - - - - NULL FTSJ3 117246 genome.wustl.edu 37 17 61902073 61902073 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017647.3 -1 reviewed p.A281T 1.000 134 0% 91 49.5% - - benign(0.003) tolerated(0.42) neutral(0.014) NULL SCN4A 6329 genome.wustl.edu 37 17 62036661 62036661 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000334.4 -1 reviewed p.N661 0.359 40 0% 40 17.5% - - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels FADS6 283985 genome.wustl.edu 37 17 72878808 72878808 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000413142 -1 known p.R47H 0.000 14 0% 10 50% - - unknown(0) - - NULL GGA3 23163 genome.wustl.edu 37 17 73234436 73234436 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138619.2 -1 reviewed p.A699V 0.997 41 0% 37 54.1% - - benign(0.313) tolerated(0.66) neutral(0.100) HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain GALK1 2584 genome.wustl.edu 37 17 73758856 73758856 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000154.1 -1 reviewed p.R241H 0.999 10 0% 15 60% - - benign(0.014) deleterious(0.01) neutral(0.406) superfamily_SSF55060 UNC13D 201294 genome.wustl.edu 37 17 73836863 73836863 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_199242.2 -1 reviewed p.T221 0.995 59 0% 46 56.5% - - - - - HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) EVPL 2125 genome.wustl.edu 37 17 74003314 74003314 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001988.2 -1 validated p.L1991Q 1.000 77 0% 63 30.2% - - possibly_damaging(0.476) deleterious(0) deleterious(0.602) HMMSmart_SM00250,superfamily_Plakin repeat EXOC7 23265 genome.wustl.edu 37 17 74093947 74093947 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001145297.2 -1 validated p.H190Q 1.000 70 0% 53 52.8% - - benign(0.002) tolerated(1) - NULL UBE2O 63893 genome.wustl.edu 37 17 74395862 74395862 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_022066.3 -1 validated p.P432 0.003 50 0% 36 41.7% - - - - - NULL DNAH17 8632 genome.wustl.edu 37 17 76563079 76563079 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000389840 -1 known e9+2 0.889 12 0% 24 29.2% - - - - - - ACTG1 71 genome.wustl.edu 37 17 79478637 79478637 + Missense_Mutation SNP A A C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001614.2 -1 reviewed p.F127V 1.000 21 0% 25 36% - - - - - HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain HGS 9146 genome.wustl.edu 37 17 79663641 79663641 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004712.3 +1 provisional p.Y524C 1.000 11 0% 10 80% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL CEP192 55125 genome.wustl.edu 37 18 13067922 13067922 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032142.3 +1 validated p.H931 0.996 130 0% 152 32.9% - - - - - NULL C18orf8 29919 genome.wustl.edu 37 18 21109678 21109678 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013326.3 +1 validated e16+2 1.000 136 0% 132 33.3% - - - - - - LAMA3 3909 genome.wustl.edu 37 18 21451571 21451571 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198129.1 +1 reviewed p.A1648 0.000 40 0% 53 34% - - - - - HMMPfam_Laminin_B,superfamily_EGF/Laminin CABYR 26256 genome.wustl.edu 37 18 21739590 21739590 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000399496 +1 known p.D232 0.993 160 0% 161 33.5% - - - - - NULL OSBPL1A 114876 genome.wustl.edu 37 18 21758054 21758054 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_080597.2 -1 reviewed p.S672 0.959 118 0% 115 47.8% - - - - - HMMPfam_Oxysterol_BP IMPACT 55364 genome.wustl.edu 37 18 22029873 22029873 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018439.3 +1 validated p.C284S 1.000 100 0% 139 51.1% - - benign(0.01) tolerated(0.34) neutral(0.024) HMMPfam_UPF0029,superfamily_Ribosomal protein S5 domain 2-like ZNF521 25925 genome.wustl.edu 37 18 22807259 22807259 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015461.2 -1 validated p.R208H 1.000 146 0% 151 48.3% - - probably_damaging(0.983) tolerated(0.05) deleterious(0.774) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers KCTD1 284252 genome.wustl.edu 37 18 24039824 24039824 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142730.1 -1 validated p.E733 1.000 106 0% 101 40.6% - - - - - HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain PIK3C3 5289 genome.wustl.edu 37 18 39617663 39617663 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002647.2 +1 validated p.L616R 1.000 184 0% 318 31.8% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Kinase_like RPL17 6139 genome.wustl.edu 37 18 47014920 47014920 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000985.3 -1 reviewed p.L175P 1.000 103 0% 83 38.6% - - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL C19orf21 126353 genome.wustl.edu 37 19 758688 758688 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173481.2 +1 predicted p.N581S 0.000 37 0% 52 32.7% - - benign(0) tolerated(0.74) neutral(0.002) NULL LOC100132469 100132469 genome.wustl.edu 37 19 2476418 2476418 + Missense_Mutation SNP C C G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_001726134.1 -1 model p.G95A 0.000 15 0% 16 50% - - - - - NULL ANKRD24 170961 genome.wustl.edu 37 19 4207577 4207577 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133475.1 +1 provisional p.A206V 0.465 184 0% 232 47% - - possibly_damaging(0.83) tolerated(0.06) deleterious(0.638) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat PLIN4 729359 genome.wustl.edu 37 19 4512285 4512285 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080400.1 -1 provisional p.G549S 0.436 74 0% 72 41.7% - - probably_damaging(1) tolerated(0.67) deleterious(0.502) NULL PLIN4 729359 genome.wustl.edu 37 19 4512550 4512550 + Silent SNP G G A rs180803971 by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001080400.1 -1 provisional p.T460 0.000 57 0% 67 47.8% - - - - - NULL DPP9 91039 genome.wustl.edu 37 19 4714108 4714108 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_139159.4 -1 reviewed p.R100C 1.000 9 0.000 9 0.444 - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PTPRS 5802 genome.wustl.edu 37 19 5265111 5265111 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002850.3 -1 reviewed p.S159N 1.000 85 0% 58 51.7% - - possibly_damaging(0.629) tolerated(0.1) deleterious(0.506) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin SAFB2 9667 genome.wustl.edu 37 19 5612549 5612549 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014649.2 -1 validated e6+2 1.000 66 0% 66 39.4% - - - - - - VAV1 7409 genome.wustl.edu 37 19 6850766 6850766 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005428.2 +1 reviewed p.T739A 0.000 83 0% 55 36.4% - - benign(0.001) tolerated(0.23) neutral(0.042) HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550 CD209 30835 genome.wustl.edu 37 19 7811382 7811382 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021155.3 -1 reviewed p.L48I 0.000 78 0% 80 11.3% - - unknown(0) tolerated(0.11) - NULL FBN3 84467 genome.wustl.edu 37 19 8206926 8206926 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032447.3 -1 reviewed p.T213A 1.000 18 0% 25 20% - - benign(0.001) deleterious(0.01) neutral(0.406) HMMPfam_TB,superfamily_TB module/8-cys domain PRAM1 84106 genome.wustl.edu 37 19 8564295 8564295 + Nonsense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032152.3 -1 reviewed p.Q133* 0.001 49 0% 39 51.3% - - - - - NULL ADAMTS10 81794 genome.wustl.edu 37 19 8660650 8660650 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030957.2 -1 reviewed p.Y492C 1.000 145 0% 147 31.3% - - possibly_damaging(0.823) tolerated(0.06) deleterious(0.634) NULL ZNF317 57693 genome.wustl.edu 37 19 9271126 9271126 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020933.3 +1 provisional p.A269T 0.000 150 0% 180 48.3% - - benign(0) tolerated(0.32) neutral(0.024) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers OR7D4 125958 genome.wustl.edu 37 19 9325321 9325321 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005191.1 -1 provisional p.N65D 1.000 282 0% 275 38.5% - - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CCDC130 81576 genome.wustl.edu 37 19 13873445 13873445 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030818.2 +1 provisional p.S252G 0.994 16 0% 10 50% - - benign(0) tolerated(0.4) neutral(0.016) HMMPfam_DUF572 AKAP8 10270 genome.wustl.edu 37 19 15472541 15472541 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005858.2 -1 reviewed p.K465 1.000 35 0% 42 23.8% - - - - - HMMPfam_AKAP95 PGLYRP2 114770 genome.wustl.edu 37 19 15579486 15579486 + Silent SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_052890.3 -1 validated p.T573 0.000 83 0% 73 54.8% - - - - - NULL CYP4F2 8529 genome.wustl.edu 37 19 16003355 16003355 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001082.3 -1 reviewed p.F127 0.796 208 0% 156 44.2% - - - - - HMMPfam_p450,superfamily_Cytochrome_P450 CHERP 10523 genome.wustl.edu 37 19 16641397 16641397 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006387.5 -1 validated p.Q292R 1.000 19 0% 22 22.7% - - benign(0.068) deleterious(0.04) neutral(0.353) superfamily_ENTH/VHS domain SIN3B 23309 genome.wustl.edu 37 19 16973372 16973372 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015260.1 +1 provisional e9+2 1.000 37 0% 30 33.3% - - - - - - CPAMD8 27151 genome.wustl.edu 37 19 17122289 17122289 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000443236 -1 known p.G215D 1.000 113 0% 146 10.3% - - - - - HMMPfam_A2M_N ANO8 57719 genome.wustl.edu 37 19 17436036 17436036 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020959.2 -1 validated p.T941A 0.892 18 0% 17 35.3% - - unknown(0) tolerated(0.32) - NULL GTPBP3 84705 genome.wustl.edu 37 19 17449797 17449797 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_133644.2 +1 validated p.G209D 0.999 23 0% 27 18.5% - - benign(0.418) deleterious(0.01) deleterious(0.541) superfamily_SSF52540 FCHO1 23149 genome.wustl.edu 37 19 17886852 17886852 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015122.2 +1 validated p.R355H 0.586 33 0% 24 41.7% - - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) NULL ELL 8178 genome.wustl.edu 37 19 18572531 18572531 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006532.3 -1 validated p.G201R 0.453 27 0% 24 33.3% - - possibly_damaging(0.783) tolerated(0.42) neutral(0.307) HMMPfam_ELL DDX49 54555 genome.wustl.edu 37 19 19033201 19033201 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_019070.4 +1 validated p.I172F 0.998 9 0.000 12 0.583 - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540 SUGP2 10147 genome.wustl.edu 37 19 19105235 19105235 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001017392.3 -1 reviewed p.T1063 0.399 166 0% 154 38.3% - - - - - NULL ZNF14 7561 genome.wustl.edu 37 19 19823179 19823179 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021030.2 -1 reviewed p.E304G 1.000 176 0% 194 33% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF57667 ZNF14 7561 genome.wustl.edu 37 19 19823414 19823414 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021030.2 -1 reviewed p.K226E 0.721 178 0% 215 35.3% - - possibly_damaging(0.922) tolerated(0.27) neutral(0.405) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF14 7561 genome.wustl.edu 37 19 19823576 19823576 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_021030.2 -1 reviewed p.K172Q 0.091 214 0% 241 34% - - possibly_damaging(0.869) deleterious(0.02) deleterious(0.720) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF493 284443 genome.wustl.edu 37 19 21607382 21607382 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001076678.2 +1 validated p.S641P 0.000 152 0% 204 30.9% - - benign(0.048) tolerated(0.29) neutral(0.032) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF507 22847 genome.wustl.edu 37 19 32845078 32845078 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001136156.1 +1 validated p.T448A 0.979 212 0% 201 29.4% - - benign(0.003) tolerated(0.34) neutral(0.023) NULL WDR88 126248 genome.wustl.edu 37 19 33639782 33639782 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173479.3 +1 validated p.D215 0.612 155 0% 138 42% - - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like UBA2 10054 genome.wustl.edu 37 19 34935951 34935951 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005499.2 +1 validated p.D232 1.000 159 0% 170 35.3% - - - - - superfamily_MoeB ZNF599 148103 genome.wustl.edu 37 19 35260390 35260390 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001007248.2 -1 validated p.Q30R 0.994 86 0% 68 26.5% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF792 126375 genome.wustl.edu 37 19 35449405 35449405 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_175872.4 -1 validated p.C452R 0.367 208 0% 188 32.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers HAUS5 23354 genome.wustl.edu 37 19 36110931 36110931 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015302.1 +1 validated p.T475M 0.000 112 0% 132 43.9% - - benign(0.007) tolerated(0.16) neutral(0.059) NULL LOC644189 644189 genome.wustl.edu 37 19 36913675 36913675 + RNA SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XR_016949.3 +1 model NULL 0.383 34 0% 39 12.8% - - - - - - HKR1 284459 genome.wustl.edu 37 19 37854290 37854290 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181786.2 +1 provisional p.G531 0.991 118 0% 98 39.8% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SIPA1L3 23094 genome.wustl.edu 37 19 38573598 38573598 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015073.1 +1 validated p.S465G 0.884 24 0% 20 45% - - benign(0) deleterious(0.03) neutral(0.364) NULL SIRT2 22933 genome.wustl.edu 37 19 39374290 39374290 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012237.2 -1 reviewed p.E203G 1.000 61 0% 54 29.6% - - possibly_damaging(0.759) tolerated(0.13) deleterious(0.534) HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain SPTBN4 57731 genome.wustl.edu 37 19 41038638 41038638 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020971.2 +1 reviewed p.E1352G 1.000 44 0% 65 35.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat ZNF227 7770 genome.wustl.edu 37 19 44740328 44740328 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182490.1 +1 provisional p.G582E 1.000 192 0% 188 39.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PRKD2 25865 genome.wustl.edu 37 19 47181872 47181872 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001079880.1 -1 reviewed p.F707L 0.997 37 0% 47 40.4% - - possibly_damaging(0.663) tolerated(0.1) deleterious(0.521) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ARHGAP35 2909 genome.wustl.edu 37 19 47424900 47424900 + Frame_Shift_Del DEL G G - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004491.4 +1 reviewed p.E990fs 1.000 - - - - - - - - - NULL SLC8A2 6543 genome.wustl.edu 37 19 47969299 47969299 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015063.2 -1 validated p.V121A 1.000 43 0% 42 26.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Na_Ca_ex LIG1 3978 genome.wustl.edu 37 19 48657201 48657201 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000234.1 -1 reviewed p.T132A 0.229 49 0% 48 52.1% - - benign(0.001) tolerated(0.16) neutral(0.059) NULL CGB1 114335 genome.wustl.edu 37 19 49539414 49539414 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033377.1 -1 reviewed p.C52 1.000 30 0% 29 24.1% - - - - - HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,superfamily_SSF57501 AP2A1 160 genome.wustl.edu 37 19 50285029 50285029 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014203.2 +1 reviewed p.A28V 1.000 53 0% 49 34.7% - - probably_damaging(0.956) tolerated(0.15) deleterious(0.641) superfamily_ARM repeat VRK3 51231 genome.wustl.edu 37 19 50498069 50498069 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016440.3 -1 reviewed e7+2 0.997 25 0% 20 45% - - - - - - SIGLEC7 27036 genome.wustl.edu 37 19 51646000 51646000 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014385.2 +1 validated p.M125T 0.045 179 0% 167 44.3% - - benign(0.006) deleterious(0.01) neutral(0.406) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin SIGLEC8 27181 genome.wustl.edu 37 19 51955788 51955788 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014442.2 -1 validated p.T449A 0.000 79 0% 75 58.7% - - benign(0.133) tolerated(0.19) neutral(0.060) NULL FPR2 2358 genome.wustl.edu 37 19 52272432 52272432 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005738.1 +1 validated p.T174I 0.000 253 0% 241 32.8% - - benign(0.004) tolerated(0.61) neutral(0.004) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZNF611 81856 genome.wustl.edu 37 19 53208435 53208435 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_030972.3 -1 validated p.N625D 0.055 739 0% 691 31.4% - - benign(0.009) tolerated(0.2) neutral(0.050) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF28 7576 genome.wustl.edu 37 19 53302947 53302947 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006969.2 -1 validated p.K664 1.000 296 0% 409 35.5% - - - - - superfamily_SSF57667 ZNF813 126017 genome.wustl.edu 37 19 53993632 53993633 + Frame_Shift_Del DEL TC TC - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001004301.3 +1 validated p.S50fs 0.934:0.930 - - - - - - - - - HMMSmart_KRAB,superfamily_Krueppel-associated_box KIR3DL2 3812 genome.wustl.edu 37 19 55367217 55367217 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006737.2 +1 reviewed p.R267C 0.000 217 0% 240 19.6% - - possibly_damaging(0.658) deleterious(0) deleterious(0.677) HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726 BRSK1 84446 genome.wustl.edu 37 19 55805407 55805407 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032430.1 +1 validated p.N161D 1.000 150 0% 169 46.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase ZNF547 284306 genome.wustl.edu 37 19 57889379 57889379 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_173631.2 +1 validated p.V345 0.615 302 0% 313 44.7% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF772 400720 genome.wustl.edu 37 19 57986365 57986365 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000415705 -1 known p.M97V 0.000 136 0.7% 182 37.4% - - - - - NULL ZNF587 84914 genome.wustl.edu 37 19 58352204 58352204 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_002343662.1 +1 model e4-2 0.953 73 0% 83 21.7% - - - - - - ZNF587 84914 genome.wustl.edu 37 19 58370032 58370032 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000339656 +1 known p.A84 0.028 323 0% 302 29.8% - - - - - NULL TRIM28 10155 genome.wustl.edu 37 19 59059218 59059218 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005762.2 +1 reviewed p.L300Q 0.996 23 0% 16 50% - - benign(0.149) deleterious(0.03) neutral(0.378) HMMSmart_SM00502 NRSN2 80023 genome.wustl.edu 37 20 330288 330288 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_024958.2 +1 validated p.M1V 0.576 44 0% 31 35.5% - - benign(0.008) - - NULL SLC52A3 113278 genome.wustl.edu 37 20 744386 744386 + Missense_Mutation SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033409.3 -1 validated p.G277C 0.000 38 0% 28 39.3% - - possibly_damaging(0.943) tolerated(0.05) deleterious(0.733) NULL SIRPD 128646 genome.wustl.edu 37 20 1532528 1532528 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_178460.2 -1 validated p.N77S 0.058 83 0% 117 15.4% - - benign(0.019) deleterious(0) neutral(0.446) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 SIRPB1 10326 genome.wustl.edu 37 20 1552470 1552470 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006065.3 -1 reviewed p.L216P 0.006 149 0% 161 39.8% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin ENSG00000250798 0 genome.wustl.edu 37 20 3127013 3127015 + RNA DEL AAA AAA - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 AAA AAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000502279 +1 novel NULL 0.005:0.005:0.004 - - - - - - - - - - ATRN 8455 genome.wustl.edu 37 20 3540041 3540041 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_139321.2 +1 reviewed p.Y372H 1.000 116 0% 144 36.8% - - benign(0.042) deleterious(0) neutral(0.447) HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain FERMT1 55612 genome.wustl.edu 37 20 6077679 6077679 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017671.4 -1 reviewed p.Y320C 1.000 296 0% 372 34.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 CSRP2BP 57325 genome.wustl.edu 37 20 18142496 18142496 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020536.4 +1 reviewed p.T239A 1.000 145 0% 208 44.7% - - benign(0.076) tolerated(0.26) neutral(0.040) NULL DZANK1 55184 genome.wustl.edu 37 20 18370409 18370409 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001099407.1 -1 validated p.K652E 0.892 162 0% 213 42.3% - - possibly_damaging(0.916) tolerated(0.12) deleterious(0.627) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK NINL 22981 genome.wustl.edu 37 20 25457050 25457055 + In_Frame_Del DEL CTCCCA CTCCCA - rs68078266 byCluster;by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 CTCCCA CTCCCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_025176.4 -1 validated p.WE958in_frame_del 0.033:0.033:0.053:0.050:0.000:0.000 - - - - - - - - - NULL BPIFB4 149954 genome.wustl.edu 37 20 31671642 31671642 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_182519.2 +1 validated p.G213 0.981 48 0% 32 37.5% - - - - - HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328 MYH7B 57644 genome.wustl.edu 37 20 33568515 33568515 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020884.3 +1 reviewed p.N201 0.985 101 0% 85 16.5% - - - - - HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases C20orf152 140894 genome.wustl.edu 37 20 34618341 34618341 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_080834.1 +1 predicted p.L497P 0.869 274 0% 297 29.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SAMHD1 25939 genome.wustl.edu 37 20 35579999 35579999 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015474.3 -1 reviewed p.D16 0.979 93 0% 117 44.4% - - - - - NULL TOP1 7150 genome.wustl.edu 37 20 39742794 39742794 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003286.2 +1 reviewed p.R546Q 1.000 106 0% 143 51% - - benign(0.121) tolerated(0.75) neutral(0.011) superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I CHD6 84181 genome.wustl.edu 37 20 40045877 40045877 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032221.3 -1 reviewed p.L2080 0.311 89 0% 115 47% - - - - - NULL EYA2 2139 genome.wustl.edu 37 20 45771768 45771768 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005244.4 +1 reviewed p.L320P 1.000 43 0% 54 42.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hydrolase NCOA3 8202 genome.wustl.edu 37 20 46279845 46279845 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_181659.2 +1 reviewed p.Q1257 0.790 48 2.1% 35 17.1% - - - - - NULL PREX1 57580 genome.wustl.edu 37 20 47246062 47246062 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020820.3 -1 reviewed p.L1564P 1.000 52 1.9% 40 42.5% - - probably_damaging(0.969) deleterious(0) deleterious(0.856) NULL SLC9A8 23315 genome.wustl.edu 37 20 48439605 48439605 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015266.1 +1 validated p.C72 1.000 81 0% 84 32.1% - - - - - HMMPfam_Na_H_Exchanger PARD6B 84612 genome.wustl.edu 37 20 49366800 49366800 + Silent SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032521.2 +1 reviewed p.I298 0.702 193 0% 212 47.6% - - - - - NULL BCAS1 8537 genome.wustl.edu 37 20 52675191 52675191 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003657.2 -1 reviewed p.Y23N 0.000 49 0% 96 45.8% - - benign(0.071) tolerated(0.4) neutral(0.021) NULL APCDD1L 164284 genome.wustl.edu 37 20 57036548 57036548 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153360.1 -1 provisional p.P268 0.045 12 0.000 9 0.556 - - - - - NULL GNAS 2778 genome.wustl.edu 37 20 57484249 57484250 + Frame_Shift_Ins INS - - T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_080425.2 +1 reviewed p.D832fs 0.750:0.654 - - - - - - - - - HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases PSMA7 5688 genome.wustl.edu 37 20 60714168 60714168 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002792.2 -1 reviewed p.Y145C 1.000 50 0% 100 29% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) DIDO1 11083 genome.wustl.edu 37 20 61538656 61538656 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033081.1 -1 reviewed p.A406V 1.000 103 0% 92 52.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ADAMTS1 9510 genome.wustl.edu 37 21 28210371 28210371 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006988.3 -1 reviewed p.I811F 1.000 73 0% 81 51.9% - - probably_damaging(0.976) deleterious(0.01) deleterious(0.824) HMMPfam_ADAM_spacer1 LTN1 26046 genome.wustl.edu 37 21 30325604 30325604 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015565.2 -1 validated p.N1058 0.995 84 0% 127 36.2% - - - - - NULL SCAF4 57466 genome.wustl.edu 37 21 33044257 33044259 + In_Frame_Del DEL GCT GCT - novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 GCT GCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020706.2 -1 reviewed p.Q966in_frame_del 0.841:0.842:0.872 - - - - - - - - - NULL IFNAR2 3455 genome.wustl.edu 37 21 34632954 34632954 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_207585.1 +1 reviewed p.A254 0.000 118 0% 188 37.8% - - - - - NULL DNAJC28 54943 genome.wustl.edu 37 21 34861098 34861098 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001040192.1 -1 validated p.E201 0.997 163 0% 175 41.7% - - - - - HMMPfam_DUF1992 ITSN1 6453 genome.wustl.edu 37 21 35124151 35124151 + Missense_Mutation SNP C C G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003024.2 +1 reviewed p.S188C 1.000 107 0% 123 45.5% - - unknown(0) tolerated(0.18) - superfamily_EF-hand RUNX1 861 genome.wustl.edu 37 21 36252883 36252883 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001754.4 -1 reviewed p.D160G 1.000 28 0% 50 34% - - probably_damaging(0.997) deleterious(0) deleterious(0.911) superfamily_p53-like transcription factors,HMMPfam_Runt TTC3 7267 genome.wustl.edu 37 21 38463679 38463679 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001001894.1 +1 validated p.N189 0.808 60 0% 76 25% - - - - - NULL BRWD1 54014 genome.wustl.edu 37 21 40590500 40590500 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018963.3 -1 reviewed p.W1157R 1.000 69 0% 97 37.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00297,superfamily_Bromodomain,superfamily_WD40 repeat-like DSCAM 1826 genome.wustl.edu 37 21 41719705 41719705 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001389.3 -1 validated p.E368K 1.000 355 0% 424 41.3% - - probably_damaging(0.972) tolerated(0.2) neutral(0.463) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin MX1 4599 genome.wustl.edu 37 21 42813698 42813698 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001144925.1 +1 reviewed p.D262 0.928 108 0% 101 41.6% - - - - - HMMPfam_Dynamin_M,HMMSmart_DYNc,superfamily_SSF52540 RIPK4 54101 genome.wustl.edu 37 21 43162104 43162104 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020639.2 -1 reviewed p.G417R 0.997 89 0% 63 41.3% - - probably_damaging(0.99) deleterious(0.02) deleterious(0.825) superfamily_ANK ZNF295 49854 genome.wustl.edu 37 21 43412872 43412872 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098402.1 -1 validated p.R445C 1.000 58 0% 63 39.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF295 49854 genome.wustl.edu 37 21 43413650 43413650 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001098402.1 -1 validated p.N185 0.000 164 0% 186 28% - - - - - NULL RRP1 8568 genome.wustl.edu 37 21 45222302 45222302 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000400387 +1 known p.G386D 0.000 19 0% 20 50% - - - - - NULL KRTAP10-2 386679 genome.wustl.edu 37 21 45970783 45970783 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198693.2 -1 reviewed p.C187S 0.017 148 0% 135 44.4% - - unknown(0) tolerated(0.14) - NULL KRTAP10-12 386685 genome.wustl.edu 37 21 46117472 46117472 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198699.1 +1 provisional p.C119Y 0.855 331 0% 357 45.7% - - unknown(0) deleterious(0.03) - HMMPfam_Keratin_B2 SUMO3 6612 genome.wustl.edu 37 21 46228960 46228960 + Splice_Site SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006936.2 -1 validated e3+2 1.000 48 0% 34 47.1% - - - - - - ITGB2 3689 genome.wustl.edu 37 21 46308618 46308618 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000211.3 -1 reviewed p.D690 0.004 10 0.000 9 0.556 - - - - - HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail PCNT 5116 genome.wustl.edu 37 21 47767388 47767388 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006031.5 +1 reviewed p.L332 0.028 79 0% 55 32.7% - - - - - NULL PCNT 5116 genome.wustl.edu 37 21 47836167 47836167 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006031.5 +1 reviewed p.D2112G 0.000 62 0% 50 50% - - possibly_damaging(0.918) tolerated(0.06) deleterious(0.691) NULL CLTCL1 8218 genome.wustl.edu 37 22 19210259 19210259 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007098.3 -1 reviewed p.L789P 1.000 14 0% 19 42.1% - - possibly_damaging(0.742) tolerated(0.17) neutral(0.331) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat GNB1L 54584 genome.wustl.edu 37 22 19799903 19799903 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_053004.2 -1 validated p.V108M 0.017 12 0% 13 61.5% - - benign(0.291) tolerated(0.18) neutral(0.145) superfamily_WD40 repeat-like MED15 51586 genome.wustl.edu 37 22 20939481 20939481 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001003891.1 +1 reviewed p.D686 0.999 28 0% 21 38.1% - - - - - NULL CABIN1 23523 genome.wustl.edu 37 22 24445681 24445681 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012295.2 +1 reviewed p.C219R 1.000 117 0% 159 39% - - probably_damaging(0.986) tolerated(0.31) neutral(0.462) NULL SGSM1 129049 genome.wustl.edu 37 22 25315864 25315864 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001039948.2 +1 validated p.Y1088H 1.000 46 0% 59 40.7% - - probably_damaging(0.956) deleterious(0) deleterious(0.844) HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p CHEK2 11200 genome.wustl.edu 37 22 29085122 29085122 + Splice_Site SNP C C A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001005735.1 -1 reviewed e14+1 1.000 77 0% 108 41.7% - - - - - - SFI1 9814 genome.wustl.edu 37 22 32009730 32009730 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001007467.1 +1 validated p.R962H 0.000 7 0.000 8 0.625 - - benign(0) tolerated(0.09) neutral(0.296) NULL ISX 91464 genome.wustl.edu 37 22 35480478 35480478 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001008494.1 +1 validated p.N162D 0.000 42 0% 60 18.3% - - probably_damaging(0.989) tolerated(0.2) deleterious(0.488) NULL CYTH4 27128 genome.wustl.edu 37 22 37707086 37707086 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_013385.3 +1 reviewed p.Y289C 1.000 68 0% 61 47.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 CBY1 25776 genome.wustl.edu 37 22 39066985 39066985 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001002880.1 +1 reviewed p.W59R 1.000 103 0% 81 28.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TNRC6B 23112 genome.wustl.edu 37 22 40719131 40719131 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015088.2 +1 validated p.P1686 0.797 52 0% 49 57.1% - - - - - NULL TTLL1 25809 genome.wustl.edu 37 22 43442492 43442492 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_012263.4 -1 validated p.V356I 0.989 110 0% 113 46% - - benign(0.003) tolerated(0.55) neutral(0.007) HMMPfam_TTL TTLL12 23170 genome.wustl.edu 37 22 43564129 43564129 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015140.3 -1 validated p.N607S 1.000 28 0% 17 29.4% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_TTL RIBC2 26150 genome.wustl.edu 37 22 45813793 45813793 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_015653.3 +1 validated p.W102R 0.001 120 0% 124 20.2% - - benign(0.004) tolerated(0.84) neutral(0.001) HMMPfam_RIB43A SBF1 6305 genome.wustl.edu 37 22 50899625 50899625 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002972.2 -1 validated p.L977Q 0.995 12 0.000 9 0.444 - - possibly_damaging(0.716) deleterious(0) deleterious(0.704) superfamily_PH domain-like LOC100288980 100288980 genome.wustl.edu 37 22 51064862 51064863 + Frame_Shift_Ins INS - - C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_002343794.1 +1 model p.V17fs 0.002:0.000 - - - - - - - - - NULL ARSD 414 genome.wustl.edu 37 X 2825591 2825591 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000358177 -1 known p.A500V 0.861 19 0% 14 50% - - - - - HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like ARSD 414 genome.wustl.edu 37 X 2833628 2833628 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001669.2 -1 reviewed p.G323 0.591 83 0% 92 38% - - - - - HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like PNPLA4 8228 genome.wustl.edu 37 X 7889813 7889813 + Missense_Mutation SNP C C T rs186093844 by1000genomes TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001142389.1 -1 reviewed p.A118T 0.179 83 0% 69 20.3% - - benign(0) tolerated(0.1) neutral(0.286) HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like CLCN4 1183 genome.wustl.edu 37 X 10176541 10176541 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001830.3 +1 reviewed p.A434T 1.000 294 0% 366 16.1% - - possibly_damaging(0.894) tolerated(0.25) neutral(0.389) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel FRMPD4 9758 genome.wustl.edu 37 X 12720067 12720067 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_014728.3 +1 reviewed p.L336 0.159 113 0% 142 33.1% - - - - - HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 TLR7 51284 genome.wustl.edu 37 X 12904754 12904754 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_016562.3 +1 reviewed p.R376Q 0.112 262 0% 358 35.5% - - probably_damaging(0.987) tolerated(0.08) deleterious(0.736) superfamily_L domain-like PIGA 5277 genome.wustl.edu 37 X 15339761 15339761 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002641.2 -1 reviewed p.F441Y 1.000 201 0% 230 32.6% - - possibly_damaging(0.623) deleterious(0.01) deleterious(0.623) NULL EIF1AX 1964 genome.wustl.edu 37 X 20156719 20156719 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001412.3 -1 reviewed p.R13H 1.000 100 0% 143 29.4% - - unknown(0) deleterious(0) - superfamily_Nucleic acid-binding proteins KLHL34 257240 genome.wustl.edu 37 X 21674883 21674883 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_153270.1 -1 provisional p.Y342H 1.000 17 0% 11 36.4% - - probably_damaging(0.992) tolerated(0.15) deleterious(0.689) HMMSmart_Kelch,superfamily_Gal_oxid_central SMS 6611 genome.wustl.edu 37 X 22003330 22003330 + Missense_Mutation SNP T T A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004595.2 +1 reviewed p.Y312N 1.000 120 0% 142 36.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases CXorf58 254158 genome.wustl.edu 37 X 23953452 23953452 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_152761.2 +1 validated p.N232S 0.004 178 0% 206 30.6% - - benign(0.009) tolerated(0.75) neutral(0.002) NULL GK 2710 genome.wustl.edu 37 X 30714254 30714254 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001128127.1 +1 reviewed p.D216 1.000 28 0% 36 36.1% - - - - - HMMPfam_FGGY_N,superfamily_SSF53067 DMD 1756 genome.wustl.edu 37 X 32382820 32382820 + Missense_Mutation SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004006.2 -1 reviewed p.Q1678P 1.000 123 0% 170 29.4% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_Spectrin repeat PRRG1 5638 genome.wustl.edu 37 X 37285112 37285112 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000950.2 +1 reviewed p.K10 1.000 61 0% 84 40.5% - - - - - HMMSmart_SM00069 CXorf36 79742 genome.wustl.edu 37 X 45010961 45010961 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_176819.3 -1 validated p.L413P 1.000 111 0% 115 37.4% - - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SLC9A7 84679 genome.wustl.edu 37 X 46466436 46466436 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032591.1 -1 reviewed p.V710A 0.990 74 0% 50 34% - - benign(0.085) deleterious(0.04) neutral(0.355) NULL RP2 6102 genome.wustl.edu 37 X 46713476 46713476 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006915.2 +1 reviewed p.I223T 0.946 112 0% 97 36.1% - - benign(0.019) deleterious(0.03) neutral(0.365) NULL RBM10 8241 genome.wustl.edu 37 X 47041380 47041380 + Missense_Mutation SNP A A T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005676.3 +1 reviewed p.D575V 1.000 33 0% 22 36.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TBC1D25 4943 genome.wustl.edu 37 X 48417411 48417411 + Missense_Mutation SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002536.2 +1 validated p.Q172R 1.000 85 0% 74 54.1% - - benign(0.023) tolerated(0.07) neutral(0.320) NULL HDAC6 10013 genome.wustl.edu 37 X 48682667 48682667 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_006044.2 +1 reviewed p.A1181V 0.064 88 0% 103 45.6% - - benign(0.003) tolerated(1) - HMMPfam_zf-UBP,HMMSmart_ZnF_UBP KCND1 3750 genome.wustl.edu 37 X 48826120 48826120 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004979.4 -1 reviewed p.V187I 1.000 15 0% 10 50% - - possibly_damaging(0.868) tolerated(0.14) deleterious(0.587) superfamily_Voltage-gated potassium channels USP27X 389856 genome.wustl.edu 37 X 49645493 49645493 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001145073.1 +1 provisional p.C195R 1.000 9 0.000 15 0.333 - - - - - HMMPfam_UCH,superfamily_SSF54001 GSPT2 23708 genome.wustl.edu 37 X 51487904 51487904 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_018094.4 +1 reviewed p.T394 0.134 145 0.7% 117 12% - - - - - HMMPfam_GTP_EFTU,superfamily_SSF52540 RIBC1 158787 genome.wustl.edu 37 X 53457516 53457516 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001031745.1 +1 provisional p.P279L 0.999 110 0% 71 36.6% - - probably_damaging(0.99) tolerated(0.25) deleterious(0.478) HMMPfam_RIB43A WNK3 65267 genome.wustl.edu 37 X 54324763 54324763 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020922.4 -1 reviewed p.L415 1.000 183 0% 250 47.2% - - - - - superfamily_Kinase_like SNORA11 677799 genome.wustl.edu 37 X 54840883 54840883 + RNA SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NR_002953.1 +1 validated NULL 0.008 286 0% 261 44.1% - - - - - - TRO 7216 genome.wustl.edu 37 X 54957201 54957201 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000445561 +1 known p.W672R 0.934 105 0% 99 45.5% - - unknown(0) deleterious(0) - NULL ZXDA 7789 genome.wustl.edu 37 X 57935547 57935547 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007156.4 -1 reviewed p.R436 0.995 80 0% 94 34% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PJA1 64219 genome.wustl.edu 37 X 68382065 68382065 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_145119.3 -1 reviewed p.P339 0.000 59 0% 51 58.8% - - - - - NULL DGAT2L6 347516 genome.wustl.edu 37 X 69424883 69424883 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_198512.1 +1 provisional p.A314V 1.000 127 0% 146 48.6% - - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_DAGAT GDPD2 54857 genome.wustl.edu 37 X 69645915 69645915 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_017711.3 +1 reviewed p.L106P 0.852 41 0% 39 28.2% - - possibly_damaging(0.677) tolerated(0.18) neutral(0.297) NULL SLC7A3 84889 genome.wustl.edu 37 X 70149843 70149843 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001048164.2 -1 reviewed p.P2L 0.789 69 0% 55 36.4% - - benign(0) tolerated(0.2) neutral(0.049) NULL OGT 8473 genome.wustl.edu 37 X 70775052 70775052 + Silent SNP T T G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000455587 +1 known p.L207R 1.000 66 0% 61 41% - - - - - HMMPfam_TPR_1,superfamily_TPR-like CDX4 1046 genome.wustl.edu 37 X 72667229 72667229 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005193.1 +1 provisional p.A47V 0.008 40 0% 35 37.1% - - benign(0.001) tolerated(0.13) neutral(0.253) HMMPfam_Caudal_act MAGEE1 57692 genome.wustl.edu 37 X 75649700 75649700 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_020932.2 +1 reviewed p.F459 0.079 41 0% 48 35.4% - - - - - NULL MAGT1 84061 genome.wustl.edu 37 X 77096800 77096800 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_032121.5 -1 reviewed p.G314R 1.000 115 0% 138 49.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_OST3_OST6 GLA 2717 genome.wustl.edu 37 X 100662699 100662699 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_000169.2 -1 reviewed p.S65G 1.000 175 0% 220 36.8% - - probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_(Trans)glycosidases H2BFWT 158983 genome.wustl.edu 37 X 103267757 103267757 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001002916.3 -1 reviewed p.T159M 1.000 39 0% 51 45.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_H2B,superfamily_Histone-fold FRMPD3 84443 genome.wustl.edu 37 X 106846195 106846195 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b XM_042978.6 +1 model p.C1675 1.000 67 0% 45 35.6% - - - - - NULL IRS4 8471 genome.wustl.edu 37 X 107977087 107977087 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003604.2 -1 reviewed p.P830S 0.510 182 0% 300 38% - - probably_damaging(1) tolerated(0.18) deleterious(0.556) NULL IRS4 8471 genome.wustl.edu 37 X 107977759 107977759 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003604.2 -1 reviewed p.R606C 0.232 155 0% 231 36.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC6A14 11254 genome.wustl.edu 37 X 115582837 115582837 + Splice_Site SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_007231.3 +1 reviewed e8+2 1.000 141 0% 239 50.6% - - - - - - WDR44 54521 genome.wustl.edu 37 X 117526798 117526798 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000371848 +1 known p.*30R 0.741 321 0% 404 34.2% - - - - - NULL THOC2 57187 genome.wustl.edu 37 X 122747905 122747905 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001081550.1 -1 validated p.R1483G 1.000 314 0% 472 32.6% - - probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL ACTRT1 139741 genome.wustl.edu 37 X 127185531 127185531 + Silent SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_138289.3 -1 reviewed p.L219 0.921 393 0.3% 544 45.8% - - - - - HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 SMARCA1 6594 genome.wustl.edu 37 X 128640105 128640105 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003069.3 -1 reviewed p.L350 0.995 500 0% 680 30% - - - - - HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases SLC25A14 9016 genome.wustl.edu 37 X 129479167 129479167 + Silent SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_003951.2 +1 reviewed p.S29 0.977 193 0% 179 31.8% - - - - - NULL FRMD7 90167 genome.wustl.edu 37 X 131211950 131211950 + Missense_Mutation SNP T T C novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_194277.2 -1 reviewed p.T699A 0.000 141 0% 184 29.9% - - benign(0.001) tolerated(0.77) neutral(0.001) NULL FAM127B 26071 genome.wustl.edu 37 X 134186016 134186016 + Silent SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001078172.1 -1 validated p.P41 0.990 40 0% 64 34.4% - - - - - NULL CT45A5 441521 genome.wustl.edu 37 X 134948047 134948047 + Missense_Mutation SNP G G T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001007551.3 -1 reviewed p.P93H 0.016 758 0% 850 33.1% - - possibly_damaging(0.834) deleterious(0.01) deleterious(0.724) NULL ARHGEF6 9459 genome.wustl.edu 37 X 135790898 135790898 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_004840.2 -1 reviewed p.G287R 1.000 82 0% 116 38.8% - - probably_damaging(0.995) deleterious(0.04) deleterious(0.806) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) RBMX 27316 genome.wustl.edu 37 X 135956459 135956459 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_002139.3 -1 reviewed p.D340N 1.000 220 0% 256 42.2% - - possibly_damaging(0.93) deleterious(0.01) deleterious(0.782) NULL MIR513C 100302114 genome.wustl.edu 37 X 146271228 146271228 + RNA SNP A A G novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b ENST00000401352 -1 known NULL 0.069 149 0% 136 48.5% - - - - - - FATE1 89885 genome.wustl.edu 37 X 150891127 150891127 + Missense_Mutation SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_033085.2 +1 reviewed p.A150T 0.013 62 0% 65 35.4% - - possibly_damaging(0.809) tolerated(0.48) neutral(0.315) NULL PNMA5 114824 genome.wustl.edu 37 X 152159038 152159038 + Missense_Mutation SNP C C T novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_001103150.1 -1 validated p.V369M 0.000 86 0% 91 47.3% - - possibly_damaging(0.795) tolerated(0.11) deleterious(0.570) NULL HCFC1 3054 genome.wustl.edu 37 X 153219734 153219734 + Silent SNP G G A novel TCGA-AP-A054-01A-11W-A062-09 TCGA-AP-A054-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx d94e1a68-8691-49a1-a2ad-41b362583403 e5e5488a-f5e8-488b-a1b1-0a2d2cca126b NM_005334.2 -1 reviewed p.S1372 0.002 8 0.000 9 0.444 - - - - - NULL