Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain FNBP1L 54874 genome.wustl.edu 37 1 94001976 94001976 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a ENST00000271234 +1 known p.V360M 1.000 64 0% 93 26.9% - - benign(0) tolerated(0.13) neutral(0.253) NULL COL11A1 1301 genome.wustl.edu 37 1 103352612 103352612 + Missense_Mutation SNP C C A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_080629.2 -1 reviewed p.G1549C 1.000 105 0% 99 30.3% - - unknown(0) deleterious(0) - HMMPfam_Collagen NVL 4931 genome.wustl.edu 37 1 224495926 224495926 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_002533.2 -1 validated p.R128W 1.000 87 0% 143 11.9% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MST1R 4486 genome.wustl.edu 37 3 49928712 49928713 + Frame_Shift_Ins INS - - A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_002447.2 -1 validated p.G1188fs 1.000:1.000 - - - - - - - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) PIK3CA 5290 genome.wustl.edu 37 3 178917478 178917478 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_006218.2 +1 reviewed p.G118D 1.000 82 0% 86 24.4% - - probably_damaging(0.976) deleterious(0.04) deleterious(0.767) superfamily_SSF54236 LOC100288460 100288460 genome.wustl.edu 37 4 9042838 9042877 + Frame_Shift_Del DEL ATACATATATACGTATATATATACGTGTATATATACATAC ATACATATATACGTATATATATACGTGTATATATACATAC - novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 ATACATATATACGTATATATATACGTGTATATATACATAC ATACATATATACGTATATATATACGTGTATATATACATAC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a XM_002342444.1 -1 model p.M1fs 0.184:0.185:0.185:0.186:0.186:0.186 - - - - - - - - - NULL KIF4B 285643 genome.wustl.edu 37 5 154396903 154396903 + Missense_Mutation SNP G G T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001099293.1 +1 provisional p.A1162S 0.998 64 0% 60 33.3% - - benign(0.001) tolerated(0.24) neutral(0.037) NULL SCUBE3 222663 genome.wustl.edu 37 6 35209340 35209340 + Missense_Mutation SNP A A C novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_152753.2 +1 provisional p.S406R 0.089 37 0% 67 37.3% - - benign(0) tolerated(0.33) neutral(0.024) NULL ESCO2 157570 genome.wustl.edu 37 8 27660882 27660882 + Missense_Mutation SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001017420.2 +1 reviewed p.T578I 1.000 97 0% 166 13.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL KCNU1 157855 genome.wustl.edu 37 8 36788610 36788610 + Missense_Mutation SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001031836.2 +1 validated p.R960W 0.837 59 0% 75 20% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PTPRD 5789 genome.wustl.edu 37 9 8500810 8500810 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_002839.3 -1 reviewed p.T691I 1.000 115 0% 137 27.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III PTPN3 5774 genome.wustl.edu 37 9 112200466 112200466 + Missense_Mutation SNP G G T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_002829.3 -1 reviewed p.S172Y 0.969 43 0% 37 10.8% - - possibly_damaging(0.935) deleterious(0) deleterious(0.825) HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41 CEL 1056 genome.wustl.edu 37 9 135944122 135944122 + Missense_Mutation SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001807.3 +1 reviewed p.P323L 0.993 103 0% 47 12.8% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases OR8J1 219477 genome.wustl.edu 37 11 56128438 56128438 + Missense_Mutation SNP C C A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001005205.1 +1 provisional p.S239Y 1.000 83 0% 89 29.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PANX1 24145 genome.wustl.edu 37 11 93913200 93913200 + Silent SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_015368.3 +1 reviewed p.N326 0.728 72 0% 90 16.7% - - - - - NULL PA2G4 5036 genome.wustl.edu 37 12 56503676 56503676 + Missense_Mutation SNP G G T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_006191.2 +1 reviewed p.D196Y 1.000 54 0% 67 16.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core SETD1B 23067 genome.wustl.edu 37 12 122255521 122255521 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_015048.1 +1 validated p.E1049K 0.988 35 0% 42 33.3% - - unknown(0) - - NULL C16orf45 89927 genome.wustl.edu 37 16 15528610 15528610 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_033201.2 +1 validated p.G34R 1.000 10 0% 17 41.2% - - possibly_damaging(0.897) tolerated(0.16) neutral(0.413) NULL ACSM2B 348158 genome.wustl.edu 37 16 20552096 20552096 + Splice_Site SNP C C A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001105069.1 -1 validated e12-1 1.000 89 0% 95 10.5% - - - - - - TP53 7157 genome.wustl.edu 37 17 7578271 7578271 + Missense_Mutation SNP T T G novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_000546.4 -1 reviewed p.H193P 0.998 74 0% 95 55.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_p53-like transcription factors,HMMPfam_P53 MYH1 4619 genome.wustl.edu 37 17 10415238 10415238 + Missense_Mutation SNP C C A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_005963.3 -1 reviewed p.R445L 1.000 165 0% 247 12.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 LOC100132973 100132973 genome.wustl.edu 37 19 9293524 9293525 + Frame_Shift_Ins INS - - G novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a XM_001726567.1 -1 model p.H68fs 0.995:1.000 - - - - - - - - - HMMSmart_SM00512,superfamily_POZ domain,HMMPfam_Skp1_POZ DDX49 54555 genome.wustl.edu 37 19 19032475 19032475 + Missense_Mutation SNP G G T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_019070.4 +1 validated p.E81D 1.000 46 0% 32 12.5% - - benign(0.052) deleterious(0.01) neutral(0.409) HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540 APLP1 333 genome.wustl.edu 37 19 36362553 36362553 + Missense_Mutation SNP A A G novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_001024807.1 +1 reviewed p.M193V 1.000 80 0% 55 10.9% - - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2) ZSCAN4 201516 genome.wustl.edu 37 19 58187533 58187533 + Missense_Mutation SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_152677.2 +1 validated p.T7I 0.000 38 0% 35 20% - - benign(0.005) tolerated(1) - NULL CRNKL1 51340 genome.wustl.edu 37 20 20033177 20033177 + Missense_Mutation SNP G G C novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_016652.4 -1 reviewed p.P98R 0.015 28 0% 43 23.3% - - benign(0.246) - - NULL PTPRT 11122 genome.wustl.edu 37 20 40727090 40727090 + Nonsense_Mutation SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a ENST00000454126 -1 known p.W910* 1.000 49 0% 57 22.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II PRDM15 63977 genome.wustl.edu 37 21 43224699 43224699 + Missense_Mutation SNP C C T novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_022115.3 -1 validated p.V1276I 0.998 38 0% 57 14% - - possibly_damaging(0.737) deleterious(0) deleterious(0.714) NULL COL4A5 1287 genome.wustl.edu 37 X 107938567 107938567 + Missense_Mutation SNP G G A novel TCGA-B5-A1MU-01A-11D-A13L-09 TCGA-B5-A1MU-10A-01D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1cf43931-1784-46ac-9c0f-314582986afb 3618c668-3142-4a94-aa39-3ef50b7b3e4a NM_033380.1 +1 reviewed p.R1631H 1.000 67 0% 83 27.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold