Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain EPHA8 2046 genome.wustl.edu 37 1 22902836 22902836 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_020526.3 +1 reviewed p.R96C 0.998 16 0% 13 30.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like DCDC2B 149069 genome.wustl.edu 37 1 32681132 32681132 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001099434.1 +1 validated p.E314 0.934 57 0% 48 39.6% 1 0% - - - NULL SLC6A17 388662 genome.wustl.edu 37 1 110740769 110740769 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001010898.2 +1 validated p.T629 0.227 65 0% 29 34.5% 0 - - - - HMMPfam_SNF SPRR2G 6706 genome.wustl.edu 37 1 153122469 153122469 + Missense_Mutation SNP G G T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001014291.3 -1 validated p.P40T 0.000 146 0% 162 64.2% 0 - unknown(0) - - NULL MNDA 4332 genome.wustl.edu 37 1 158815481 158815481 + Silent SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_002432.1 +1 reviewed p.Y225 0.017 90 0% 139 15.1% 9 0% - - - HMMPfam_HIN ASTN1 460 genome.wustl.edu 37 1 176838004 176838004 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_004319.1 -1 validated p.R1208Q 1.000 185 0% 199 70.4% 3 66.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CR1 1378 genome.wustl.edu 37 1 207760830 207760830 + Missense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_000651.4 +1 reviewed p.R1877H 0.001 224 0% 237 23.2% 1 100% benign(0.001) tolerated(0.33) neutral(0.024) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain KCNK3 3777 genome.wustl.edu 37 2 26950552 26950552 + Missense_Mutation SNP C C A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_002246.2 +1 reviewed p.P101T 1.000 32 0% 22 36.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels SOS1 6654 genome.wustl.edu 37 2 39249914 39249914 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_005633.3 -1 reviewed p.R552K 1.000 243 0% 154 56.5% 8 75% probably_damaging(0.983) tolerated(0.09) deleterious(0.726) NULL ENSG00000228763 0 genome.wustl.edu 37 2 109294892 109294893 + Splice_Site INS - - A rs113803996 byCluster;by1000genomes TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000411710 -1 known NULL 0.001:0.000 - - - - - - - - - - POLR1B 84172 genome.wustl.edu 37 2 113310279 113310279 + Silent SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_019014.4 +1 validated p.L348 1.000 151 0% 131 25.2% 4 0% - - - HMMPfam_RNA_pol_Rpb2_2,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase FAM168B 130074 genome.wustl.edu 37 2 131813155 131813155 + Missense_Mutation SNP C C A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001009993.2 -1 validated p.A90S 1.000 64 0% 29 31% 18 44.4% probably_damaging(0.965) deleterious(0.05) deleterious(0.752) NULL NEB 4703 genome.wustl.edu 37 2 152409911 152409911 + Splice_Site SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_004543.4 -1 reviewed e98+1 1.000 163 0% 138 25.4% 0 - - - - - HOXD10 3236 genome.wustl.edu 37 2 176982023 176982023 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_002148.3 +1 reviewed p.L154 1.000 54 0% 58 62.1% 3 0% - - - NULL WDR6 11180 genome.wustl.edu 37 3 49049335 49049335 + Missense_Mutation SNP G G T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_018031.3 +1 reviewed p.R153L 0.855 117 0% 75 22.7% 43 23.2% possibly_damaging(0.906) deleterious(0) deleterious(0.804) superfamily_WD40 repeat-like PIK3CA 5290 genome.wustl.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 byCluster TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_006218.2 +1 reviewed p.E545K 1.000 111 0% 92 60.9% 3 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold FRYL 285527 genome.wustl.edu 37 4 48514651 48514651 + Silent SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_015030.1 -1 validated p.P2664 0.003 89 0% 41 43.9% 4 75% - - - superfamily_ARM repeat PRKG2 5593 genome.wustl.edu 37 4 82088325 82088325 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_006259.1 -1 provisional p.C301Y 1.000 85 0% 34 32.4% 0 - benign(0.025) deleterious(0) neutral(0.446) HMMSmart_cNMP,superfamily_cNMP_binding METTL14 57721 genome.wustl.edu 37 4 119626803 119626803 + Missense_Mutation SNP G G C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_020961.2 +1 provisional p.R298P 1.000 189 0% 117 48.7% 8 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MT-A70 PCDHB16 57717 genome.wustl.edu 37 5 140564414 140564414 + Missense_Mutation SNP A A T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_020957.1 +1 reviewed p.E760D 0.000 140 0% 110 35.5% 5 0% benign(0) tolerated(0.46) neutral(0.012) NULL RUNX2 860 genome.wustl.edu 37 6 45514918 45514919 + Frame_Shift_Ins INS - - G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001024630.3 +1 reviewed p.L550fs 1.000:1.000 - - - - - - - - - HMMPfam_RunxI RIMS1 22999 genome.wustl.edu 37 6 72678766 72678766 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_014989.4 +1 reviewed p.P82L 1.000 136 0% 53 32.1% 0 - possibly_damaging(0.527) tolerated(0.78) neutral(0.179) superfamily_FYVE/PHD zinc finger SGK1 6446 genome.wustl.edu 37 6 134495754 134495754 + Missense_Mutation SNP C C A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000367857 -1 known p.R6L 0.000 121 0% 64 35.9% 0 - benign(0) deleterious(0) neutral(0.445) NULL SASH1 23328 genome.wustl.edu 37 6 148795300 148795300 + Missense_Mutation SNP T T G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_015278.3 +1 validated p.I190S 1.000 183 0% 151 50.3% 1 100% possibly_damaging(0.557) deleterious(0) deleterious(0.635) NULL TMEM242 729515 genome.wustl.edu 37 6 157743748 157743748 + Missense_Mutation SNP A A G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_018452.4 -1 validated p.W60R 0.864 224 0% 150 37.3% 15 40% probably_damaging(0.986) tolerated(0.29) neutral(0.464) HMMPfam_DUF1358 TBRG4 9238 genome.wustl.edu 37 7 45141172 45141172 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_004749.2 -1 validated p.V537I 0.040 55 0% 27 37% 83 18% benign(0.123) tolerated(0.82) neutral(0.011) NULL SEMA3D 223117 genome.wustl.edu 37 7 84694809 84694809 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_152754.2 -1 validated p.R217* 0.999 117 0% 97 29.9% 3 0% - - - HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema ABCB1 5243 genome.wustl.edu 37 7 87179322 87179322 + Missense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_000927.3 -1 reviewed p.R467W 1.000 153 0.7% 215 43.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ADAM22 53616 genome.wustl.edu 37 7 87780312 87780312 + Missense_Mutation SNP A A G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_021723.2 +1 reviewed p.H528R 1.000 280 0% 254 45.3% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin) RBM33 155435 genome.wustl.edu 37 7 155532606 155532606 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000392761 +1 known p.R417H 0.077 34 0% 20 30% 3 0% - - - NULL ANK1 286 genome.wustl.edu 37 8 41519305 41519305 + Missense_Mutation SNP G G C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000415018 -1 known p.P1878R 0.000 46 0% 27 37% 0 - - - - NULL ZNF572 137209 genome.wustl.edu 37 8 125989971 125989971 + Silent SNP G G T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_152412.2 +1 validated p.R487 0.236 80 0% 47 46.8% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PALM2-AKAP2 445815 genome.wustl.edu 37 9 112686028 112686028 + Missense_Mutation SNP A A C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_007203.4 +1 validated p.I91L 1.000 77 0% 59 32.2% 0 - benign(0.273) tolerated(0.13) neutral(0.282) NULL EGR2 1959 genome.wustl.edu 37 10 64573185 64573185 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_000399.3 -1 reviewed p.R405* 1.000 131 0% 94 23.4% 4 75% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PTEN 5728 genome.wustl.edu 37 10 89717672 89717672 + Nonsense_Mutation SNP C C T rs121909219 byCluster TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000371953 +1 known p.R233* 0.984 118 0% 96 88.5% 18 72.2% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 SCD 6319 genome.wustl.edu 37 10 102116383 102116383 + Missense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_005063.4 +1 validated p.V248I 0.828 128 0% 104 21.2% 16 43.7% benign(0.012) tolerated(0.37) neutral(0.019) HMMPfam_FA_desaturase FGFR2 2263 genome.wustl.edu 37 10 123279677 123279677 + Missense_Mutation SNP G G C rs79184941 byCluster TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_022970.3 -1 reviewed p.S252W 1.000 79 0% 45 33.3% 21 28.5% probably_damaging(0.963) tolerated(0.07) deleterious(0.725) NULL FAM175B 23172 genome.wustl.edu 37 10 126523239 126523239 + Missense_Mutation SNP A A G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_032182.3 +1 validated p.Q316R 1.000 96 0% 76 32.9% 5 0% benign(0.059) deleterious(0.02) neutral(0.387) NULL RAG2 5897 genome.wustl.edu 37 11 36614556 36614556 + Missense_Mutation SNP G G T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_000536.3 -1 reviewed p.A388E 1.000 268 0% 218 39% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_RAG2 CDON 50937 genome.wustl.edu 37 11 125873964 125873964 + Missense_Mutation SNP T T C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_016952.4 -1 validated p.D620G 0.996 55 0% 37 37.8% 1 100% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III WSCD2 9671 genome.wustl.edu 37 12 108589647 108589647 + Missense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_014653.2 +1 validated p.R13H 1.000 20 0.000 7 0.571 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL C13orf33 84935 genome.wustl.edu 37 13 31495824 31495824 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_032849.3 +1 validated p.L210F 1.000 210 0% 146 40.4% 0 - probably_damaging(0.991) tolerated(0.33) neutral(0.468) NULL RDH11 51109 genome.wustl.edu 37 14 68159684 68159684 + Missense_Mutation SNP C C G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_016026.3 -1 validated p.G54R 1.000 133 0% 82 40.2% 34 47% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains GPR68 8111 genome.wustl.edu 37 14 91700874 91700874 + Missense_Mutation SNP T T A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_003485.3 -1 validated p.E184V 1.000 27 0% 12 75% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 ZNF609 23060 genome.wustl.edu 37 15 64792056 64792056 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_015042.1 +1 provisional p.A146 0.777 99 0% 59 33.9% 2 50% - - - NULL ANKRD11 29123 genome.wustl.edu 37 16 89349633 89349633 + Missense_Mutation SNP T T C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_013275.4 -1 validated p.K1106R 1.000 167 0% 143 41.3% 17 47% benign(0.001) tolerated(1) - superfamily_Ankyrin repeat SLC47A2 146802 genome.wustl.edu 37 17 19582183 19582183 + Missense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_152908.3 -1 validated p.T542M 0.000 42 0% 24 41.7% 0 - benign(0.02) tolerated(0.14) neutral(0.251) NULL RNF213 57674 genome.wustl.edu 37 17 78321264 78321264 + Silent SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000508628 +1 known p.L3043 0.002 51 0% 30 30% 1 100% - - - NULL ENSG00000005206 0 genome.wustl.edu 37 19 2344611 2344611 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000452401 +1 known p.P412S 1.000 75 0% 41 36.6% 44 45.4% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMSmart_SM00730,HMMPfam_Peptidase_A22B PIAS4 51588 genome.wustl.edu 37 19 4013087 4013087 + Missense_Mutation SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_015897.2 +1 provisional p.R65H 1.000 24 0% 15 60% 20 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL STXBP2 6813 genome.wustl.edu 37 19 7705060 7705063 + Frame_Shift_Del DEL GTCT GTCT - novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 GTCT GTCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000320400 +1 known p.L87fs 0.000:0.001:0.000:0.000 - - - - - - - - - NULL LOC100132973 100132973 genome.wustl.edu 37 19 9293164 9293165 + Splice_Site INS - - TTTATTTATTTATTTA novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f XM_001726567.1 -1 model e2-1 1.000:1.000 - - - - - - - - - - LOC100288184 100288184 genome.wustl.edu 37 19 19153562 19153562 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f XM_002343621.1 -1 model p.F20 0.001 73 0% 43 23.3% 19 42.1% benign(0.036) - - NULL AXL 558 genome.wustl.edu 37 19 41736912 41736912 + Silent SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_021913.3 +1 reviewed p.N209 0.961 70 0% 36 36.1% 2 0% - - - HMMSmart_SM00409,superfamily_Immunoglobulin FAM217B 63939 genome.wustl.edu 37 20 58519160 58519160 + Silent SNP G G A novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_022106.1 +1 predicted p.P54 0.000 76 0% 48 43.8% 2 50% - - - NULL EP300 2033 genome.wustl.edu 37 22 41513277 41513277 + Frame_Shift_Del DEL A A - novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001429.3 +1 reviewed p.I61fs 1.000 - - - - - - - - - NULL FBLN1 2192 genome.wustl.edu 37 22 45914634 45914634 + Missense_Mutation SNP C C G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_006486.2 +1 reviewed p.S51W 0.990 42 0% 21 47.6% 216 50.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1 ENSG00000211459 0 genome.wustl.edu 37 MT 655 655 + RNA SNP T T C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f ENST00000389680 +1 known NULL NULL 826 0.1% 503 37.6% 61 31.1% - - - - PRPS2 5634 genome.wustl.edu 37 X 12828230 12828231 + Frame_Shift_Ins INS - - ATCATTG novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001039091.2 +1 reviewed p.V170fs 0.940:1.000 - - - - - - - - - HMMPfam_Pribosyltran,superfamily_SSF53271 ATRX 546 genome.wustl.edu 37 X 76937521 76937521 + Missense_Mutation SNP G G C novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_000489.3 -1 reviewed p.S1076C 1.000 83 0% 84 44% 6 0% possibly_damaging(0.819) deleterious(0.03) deleterious(0.674) NULL PCDH11X 27328 genome.wustl.edu 37 X 91132565 91132565 + Silent SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_032968.3 +1 reviewed p.G442 0.995 151 0% 103 37.9% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like THOC2 57187 genome.wustl.edu 37 X 122866806 122866806 + Missense_Mutation SNP C C T novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_001081550.1 -1 validated p.E23K 1.000 107 0% 85 43.5% 2 0% possibly_damaging(0.952) deleterious(0.01) deleterious(0.801) NULL SSR4 6748 genome.wustl.edu 37 X 153062922 153062922 + Missense_Mutation SNP C C G novel TCGA-BG-A0RY-01A-11D-A10B-09 TCGA-BG-A0RY-10A-02D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 83781d03-2b08-49fd-87f0-4a765f8bb24a 4205f13b-98e8-43ca-aeb4-5e123723063f NM_006280.1 +1 reviewed p.L66V 1.000 54 0% 23 52.2% 1311 97.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TRAP-delta