Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain MIR429 554210 genome.wustl.edu 37 1 1104386 1104386 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000362106 +1 known NULL 0.793 33 0% 24 45.8% 12 58.3% - - - - CPSF3L 54973 genome.wustl.edu 37 1 1247987 1247987 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017871.4 -1 validated p.R463Q 1.000 25 0.000 9 0.444 128 46% benign(0.057) tolerated(0.26) neutral(0.038) NULL ATAD3B 83858 genome.wustl.edu 37 1 1425945 1425945 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031921.4 +1 provisional p.R503H 1.000 152 0% 102 59.8% 26 46.1% possibly_damaging(0.639) deleterious(0.05) deleterious(0.569) HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases NADK 65220 genome.wustl.edu 37 1 1685554 1685554 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_023018.3 -1 validated p.T346M 0.997 35 0% 25 48% 84 34.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513) TNFRSF14 8764 genome.wustl.edu 37 1 2493136 2493136 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003820.2 +1 reviewed p.A192 0.000 72 0% 52 53.8% 25 40% - - - NULL PRDM16 63976 genome.wustl.edu 37 1 3328643 3328643 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022114.3 +1 reviewed p.D628N 1.000 29 0% 14 64.3% 10 50% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL MEGF6 1953 genome.wustl.edu 37 1 3416453 3416453 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001409.3 -1 validated p.Q915* 0.043 11 0.000 8 0.625 6 16.6% - - - HMMSmart_SM00181,superfamily_EGF/Laminin CCDC27 148870 genome.wustl.edu 37 1 3670801 3670801 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152492.2 +1 validated p.H146 0.000 78 0% 39 61.5% 0 - - - - NULL CCDC27 148870 genome.wustl.edu 37 1 3680369 3680369 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152492.2 +1 validated p.R474Q 0.991 37 0% 23 60.9% 0 - probably_damaging(0.997) deleterious(0.03) deleterious(0.831) NULL LRRC47 57470 genome.wustl.edu 37 1 3703550 3703550 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020710.2 -1 validated p.V314I 0.108 104 0% 55 43.6% 62 45.1% benign(0.113) tolerated(0.74) neutral(0.010) NULL CHD5 26038 genome.wustl.edu 37 1 6214772 6214772 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015557.1 -1 provisional p.P231 0.987 23 0% 19 52.6% 0 - - - - NULL RPL22 6146 ucsc.edu 37 1 6257785 6257785 + Frame_Shift_Del DEL T - - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000983.3 -1 reviewed p.K15fs 1 - - - - - - - - - HMMPfam_Ribosomal_L22e ICMT 23463 genome.wustl.edu 37 1 6285282 6285282 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012405.3 -1 reviewed p.L238P 0.969 95 0% 77 45.5% 66 53% possibly_damaging(0.455) deleterious(0.01) deleterious(0.554) HMMPfam_ICMT DNAJC11 55735 genome.wustl.edu 37 1 6705992 6705992 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018198.3 -1 validated p.R251* 1.000 170 0% 121 44.6% 39 12.8% - - - NULL PER3 8863 genome.wustl.edu 37 1 7887247 7887247 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016831.1 +1 reviewed p.P745L 0.017 14 0% 13 46.2% 4 25% benign(0.002) tolerated(0.1) neutral(0.286) NULL RERE 473 genome.wustl.edu 37 1 8419867 8419867 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042681.1 -1 reviewed p.R1192Q 1.000 51 5.9% 34 20.6% 36 5.5% possibly_damaging(0.946) tolerated(0.17) neutral(0.449) HMMPfam_Atrophin-1 RERE 473 genome.wustl.edu 37 1 8419868 8419868 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042681.1 -1 reviewed p.R1192 1.000 50 6% 33 24.2% 36 5.5% - - - HMMPfam_Atrophin-1 RERE 473 genome.wustl.edu 37 1 8422820 8422820 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042681.1 -1 reviewed p.S609G 1.000 152 0% 121 47.1% 33 48.4% unknown(0) tolerated(0.16) - HMMPfam_Atrophin-1 CA6 765 genome.wustl.edu 37 1 9034427 9034427 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000377436 +1 known p.R289H 0.000 11 0.000 6 0.833 0 - benign(0.356) tolerated(0.15) neutral(0.354) NULL CLSTN1 22883 genome.wustl.edu 37 1 9833397 9833397 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001009566.1 -1 validated p.N49 0.564 329 0% 207 39.6% 19 47.3% - - - HMMPfam_Cadherin,superfamily_Cadherin-like KIF1B 23095 genome.wustl.edu 37 1 10338058 10338058 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015074.3 +1 reviewed p.A345V 1.000 185 0.5% 131 45% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases MASP2 10747 genome.wustl.edu 37 1 11094907 11094907 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006610.2 -1 reviewed p.D355E 0.882 118 0% 68 54.4% 0 - benign(0.008) tolerated(0.07) neutral(0.319) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain EXOSC10 5394 genome.wustl.edu 37 1 11139788 11139788 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001998.1 -1 validated p.R577* 0.977 173 0.6% 89 40.4% 35 8.5% - - - HMMSmart_SM00341 EXOSC10 5394 genome.wustl.edu 37 1 11141203 11141203 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001998.1 -1 validated p.R458H 0.660 87 0% 56 42.9% 32 9.3% benign(0.359) tolerated(0.06) neutral(0.436) NULL MTOR 2475 genome.wustl.edu 37 1 11168304 11168304 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004958.3 -1 reviewed p.T2523M 0.982 206 0% 140 55.7% 42 50% possibly_damaging(0.501) tolerated(0.06) deleterious(0.490) HMMPfam_FATC MTOR 2475 genome.wustl.edu 37 1 11188524 11188524 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004958.3 -1 reviewed p.R1966Q 1.000 142 0% 92 20.7% 29 17.2% benign(0.042) deleterious(0) neutral(0.447) superfamily_ARM-type_fold DHRS3 9249 genome.wustl.edu 37 1 12677265 12677265 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004753.4 -1 validated p.P30L 1.000 59 0% 36 36.1% 16 56.2% possibly_damaging(0.767) deleterious(0.03) deleterious(0.649) NULL PLEKHM2 23207 genome.wustl.edu 37 1 16044471 16044471 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015164.2 +1 validated p.H121Y 1.000 252 0% 142 42.3% 40 47.5% benign(0.317) deleterious(0.05) neutral(0.445) HMMPfam_RUN,HMMSmart_RUN SPEN 23013 genome.wustl.edu 37 1 16202787 16202787 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015001.2 +1 reviewed p.Y165 1.000 157 0% 119 47.1% 4 75% - - - NULL SPEN 23013 genome.wustl.edu 37 1 16256084 16256084 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015001.2 +1 reviewed p.Q1117* 0.028 71 0% 49 55.1% 11 45.4% - - - NULL SPEN 23013 genome.wustl.edu 37 1 16261435 16261435 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015001.2 +1 reviewed p.S2900 0.002 83 0% 62 53.2% 36 44.4% - - - NULL SPEN 23013 genome.wustl.edu 37 1 16262154 16262154 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015001.2 +1 reviewed p.P3140L 0.986 38 0% 25 68% 45 46.6% unknown(0) tolerated(0.34) - NULL SPEN 23013 genome.wustl.edu 37 1 16262686 16262686 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015001.2 +1 reviewed p.P3317 0.000 85 0% 68 45.6% 48 47.9% - - - NULL ZBTB17 7709 genome.wustl.edu 37 1 16270714 16270714 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000448462 -1 known p.A421 0.000 32 0% 33 48.5% 1 100% - - - NULL MST1P9 11223 genome.wustl.edu 37 1 17085040 17085040 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NR_002729.2 -1 validated NULL 0.353 333 0.3% 205 13.7% 4 0% - - - - PAX7 5081 genome.wustl.edu 37 1 19027209 19027209 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002584.2 +1 reviewed p.A283 0.000 28 0% 23 34.8% 0 - - - - superfamily_Homeodomain-like TAS1R2 80834 genome.wustl.edu 37 1 19166156 19166156 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152232.2 -1 validated p.P819 0.075 143 0% 92 40.2% 0 - - - - HMMPfam_7tm_3 PQLC2 54896 genome.wustl.edu 37 1 19644286 19644286 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040125.1 +1 validated p.V39M 1.000 161 0% 120 16.7% 25 16% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PQ-loop OTUD3 23252 genome.wustl.edu 37 1 20230831 20230831 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015207.1 +1 validated p.D226 0.828 297 0% 238 45.4% 2 50% - - - NULL EIF4G3 8672 genome.wustl.edu 37 1 21143964 21143964 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003760.3 -1 validated p.A1423V 0.998 235 0.4% 167 17.4% 48 6.2% probably_damaging(0.99) tolerated(0.49) neutral(0.452) superfamily_PH domain-like LDLRAD2 401944 genome.wustl.edu 37 1 22148092 22148092 + Missense_Mutation SNP G G A rs187938808 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001013693.2 +1 validated p.A265T 0.000 88 0% 59 42.4% 0 - benign(0) tolerated(0.16) neutral(0.059) NULL HSPG2 3339 genome.wustl.edu 37 1 22205598 22205598 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000374695 -1 known p.T787M 0.998 95 0% 54 48.1% 14 42.8% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin HTR1D 3352 genome.wustl.edu 37 1 23520393 23520393 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000864.4 -1 validated p.G107D 1.000 478 0% 388 16.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 TCEA3 6920 genome.wustl.edu 37 1 23720488 23720488 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003196.1 -1 validated p.R235W 1.000 149 0% 120 16.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510 RPL11 6135 genome.wustl.edu 37 1 24022839 24022839 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000975.2 +1 reviewed p.D171 1.000 340 0% 288 45.5% 2043 50.8% - - - superfamily_Ribosomal protein L5 IL22RA1 58985 genome.wustl.edu 37 1 24448150 24448150 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021258.2 -1 reviewed p.S290 0.000 120 0% 84 51.2% 0 - - - - NULL IL28RA 163702 genome.wustl.edu 37 1 24483816 24483816 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_170743.2 -1 reviewed p.P456L 0.009 109 0% 99 46.5% 2 50% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL NIPAL3 57185 genome.wustl.edu 37 1 24782661 24782661 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020448.4 +1 validated p.A224V 0.999 397 0% 255 46.7% 24 41.6% benign(0.269) deleterious(0) deleterious(0.473) HMMPfam_DUF803 RCAN3 11123 genome.wustl.edu 37 1 24857809 24857809 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013441.2 +1 validated p.A99 0.204 98 0% 69 29% 18 22.2% - - - HMMPfam_Calcipressin CLIC4 25932 genome.wustl.edu 37 1 25124269 25124269 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013943.2 +1 reviewed p.F37L 1.000 376 0.3% 261 37.5% 50 50% benign(0.126) deleterious(0.03) neutral(0.375) superfamily_Thioredoxin-like RUNX3 864 genome.wustl.edu 37 1 25228664 25228664 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001031680.2 -1 reviewed p.T413 0.453 14 0% 10 50% 4 0% - - - HMMPfam_RunxI RUNX3 864 genome.wustl.edu 37 1 25228691 25228691 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001031680.2 -1 reviewed p.A404 0.808 8 0.000 7 0.571 3 66.6% - - - HMMPfam_RunxI SEPN1 57190 genome.wustl.edu 37 1 26131725 26131725 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000354177 +1 known p.L132F 1.000 128 0% 102 42.2% 55 47.2% possibly_damaging(0.644) tolerated(0.1) deleterious(0.512) NULL EXTL1 2134 genome.wustl.edu 37 1 26360226 26360226 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004455.2 +1 reviewed p.R520W 0.998 192 0% 142 49.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_transf_64,superfamily_SSF53448 ARID1A 8289 genome.wustl.edu 37 1 27057761 27057761 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006015.4 +1 reviewed p.P490L 0.984 648 0.2% 502 45% 49 51% unknown(0) deleterious(0.04) - NULL ARID1A 8289 genome.wustl.edu 37 1 27105774 27105774 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006015.4 +1 reviewed p.K1795N 0.485 67 0% 64 42.2% 58 51.7% benign(0.033) tolerated(0.45) neutral(0.013) NULL ZDHHC18 84243 genome.wustl.edu 37 1 27177685 27177685 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032283.2 +1 validated p.T300M 1.000 381 0% 267 43.4% 22 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GPATCH3 63906 genome.wustl.edu 37 1 27219171 27219171 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022078.2 -1 validated p.R408H 1.000 94 0% 56 30.4% 22 50% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMSmart_G_patch WDTC1 23038 genome.wustl.edu 37 1 27609861 27609861 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015023.3 +1 validated p.T71M 0.998 87 0% 66 48.5% 44 31.8% benign(0.001) tolerated(0.1) neutral(0.286) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 WDTC1 23038 genome.wustl.edu 37 1 27618814 27618814 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015023.3 +1 validated p.D196 1.000 53 0% 51 13.7% 39 20.5% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like WDTC1 23038 genome.wustl.edu 37 1 27622848 27622848 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015023.3 +1 validated p.R302Q 1.000 576 0% 512 45.1% 54 48.1% benign(0.374) tolerated(0.46) neutral(0.131) superfamily_WD40 repeat-like SYTL1 84958 genome.wustl.edu 37 1 27679892 27679892 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032872.1 +1 provisional p.R476C 0.993 52 0% 27 59.3% 55 49% benign(0.015) deleterious(0.05) neutral(0.346) HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB SYTL1 84958 genome.wustl.edu 37 1 27680286 27680286 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032872.1 +1 provisional p.P532 0.057 93 0% 50 50% 45 26.6% - - - NULL GPR3 2827 genome.wustl.edu 37 1 27720941 27720941 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005281.2 +1 provisional p.Y213 1.000 226 0% 132 47% 2 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 FGR 2268 genome.wustl.edu 37 1 27939518 27939518 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042729.1 -1 reviewed p.P499 0.137 104 0% 50 44% 1 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like PTPRU 10076 genome.wustl.edu 37 1 29585804 29585804 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005704.3 +1 reviewed p.R170H 0.997 66 0% 43 48.8% 2 50% benign(0.099) tolerated(0.74) neutral(0.009) HMMPfam_MAM,HMMSmart_SM00137 SDC3 9672 genome.wustl.edu 37 1 31350004 31350004 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014654.3 -1 reviewed p.Q89* 1.000 32 0% 15 46.7% 7 0% - - - HMMPfam_Syndecan COL16A1 1307 genome.wustl.edu 37 1 32136232 32136232 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001856.3 -1 reviewed p.P1056T 1.000 62 0% 26 23.1% 0 - probably_damaging(0.998) tolerated(0.56) deleterious(0.481) HMMPfam_Collagen SPOCD1 90853 genome.wustl.edu 37 1 32263862 32263862 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000452755 -1 known p.R96Q 0.000 105 0% 69 37.7% 0 - - - - HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510 SPOCD1 90853 genome.wustl.edu 37 1 32280807 32280807 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144569.4 -1 provisional p.P43L 0.000 27 0% 21 61.9% 0 - possibly_damaging(0.931) - - NULL BSDC1 55108 genome.wustl.edu 37 1 32841904 32841904 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001143888.1 -1 validated p.S389L 0.998 91 0% 62 35.5% 58 53.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF362 149076 genome.wustl.edu 37 1 33760803 33760803 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152493.2 +1 validated p.R348Q 1.000 104 0% 65 36.9% 55 41.8% possibly_damaging(0.938) deleterious(0.01) deleterious(0.789) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CLSPN 63967 genome.wustl.edu 37 1 36216872 36216872 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022111.2 -1 reviewed p.E669 0.492 161 0% 126 52.4% 1 0% - - - NULL THRAP3 9967 genome.wustl.edu 37 1 36752289 36752289 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005119.3 +1 validated p.R153Q 1.000 126 0% 117 41% 56 33.9% unknown(0) tolerated(0.06) - NULL GRIK3 2899 genome.wustl.edu 37 1 37324825 37324825 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000831.3 -1 reviewed p.V330I 1.000 60 0% 37 54.1% 0 - possibly_damaging(0.489) deleterious(0.03) deleterious(0.527) HMMPfam_ANF_receptor,superfamily_SSF53822 EPHA10 284656 genome.wustl.edu 37 1 38192844 38192844 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099439.1 -1 validated p.V568I 0.985 99 0% 55 45.5% 0 - probably_damaging(0.968) tolerated(0.93) neutral(0.410) NULL INPP5B 3633 genome.wustl.edu 37 1 38343869 38343869 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005540.2 -1 reviewed p.F556 0.998 130 0% 84 41.7% 6 66.6% - - - HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like RLF 6018 genome.wustl.edu 37 1 40705007 40705007 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012421.3 +1 validated p.E1545K 1.000 114 0% 87 37.9% 16 31.2% benign(0.404) tolerated(0.48) neutral(0.141) NULL RIMS3 9783 genome.wustl.edu 37 1 41101673 41101673 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014747.2 -1 validated p.A92T 1.000 60 0% 37 51.4% 2 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL KCNQ4 9132 genome.wustl.edu 37 1 41304142 41304142 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004700.2 +1 reviewed p.V679I 0.989 69 0% 50 60% 1 0% benign(0.27) tolerated(0.19) neutral(0.079) NULL SLFNL1 200172 genome.wustl.edu 37 1 41486066 41486066 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144990.3 -1 validated p.P89 0.001 20 0% 24 50% 2 50% - - - NULL HIVEP3 59269 genome.wustl.edu 37 1 41978960 41978960 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024503.3 -1 validated p.R1978C 0.087 28 0% 22 22.7% 1 0% possibly_damaging(0.938) tolerated(0.2) neutral(0.432) NULL HIVEP3 59269 genome.wustl.edu 37 1 42047765 42047765 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024503.3 -1 validated p.P902S 1.000 104 0% 87 42.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FOXJ3 22887 genome.wustl.edu 37 1 42645437 42645437 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014947.3 -1 validated p.R605C 1.000 291 0% 183 48.1% 24 45.8% probably_damaging(1) tolerated(0.09) deleterious(0.796) NULL SLC2A1 6513 genome.wustl.edu 37 1 43396518 43396518 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006516.2 -1 reviewed p.M99V 1.000 67 0% 36 50% 412 52.1% benign(0) tolerated(1) - HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter WDR65 149465 genome.wustl.edu 37 1 43647257 43647257 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152498.3 +1 validated p.R70 0.748 135 0% 100 36% 1 0% - - - superfamily_WD40_like SZT2 23334 genome.wustl.edu 37 1 43913782 43913782 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015284.2 +1 predicted p.R2300Q 1.000 67 0% 41 31.7% 16 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PTPRF 5792 genome.wustl.edu 37 1 44084400 44084400 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002840.3 +1 reviewed p.R1491C 1.000 97 0% 59 39% 151 49.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II ST3GAL3 6487 genome.wustl.edu 37 1 44386172 44386172 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_174963.2 +1 reviewed p.A350T 0.999 153 0% 110 37.3% 5 20% possibly_damaging(0.934) deleterious(0) deleterious(0.825) HMMPfam_Glyco_transf_29 NASP 4678 genome.wustl.edu 37 1 46073567 46073567 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_172164.1 +1 reviewed p.A330 0.844 105 1% 68 51.5% 40 65% - - - superfamily_SSF48452 MAST2 23139 genome.wustl.edu 37 1 46498018 46498018 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015112.2 +1 validated p.R1119Q 1.000 93 0% 80 53.7% 32 40.6% possibly_damaging(0.855) deleterious(0.04) deleterious(0.679) HMMSmart_SM00228,superfamily_PDZ domain-like ATPAF1 64756 genome.wustl.edu 37 1 47130978 47130978 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022745.3 -1 reviewed p.P109S 1.000 172 0% 116 50.9% 25 48% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_ATP11 CYP4B1 1580 genome.wustl.edu 37 1 47282820 47282820 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099772.1 +1 reviewed p.V392I 0.782 238 0% 183 43.2% 1 0% benign(0.202) tolerated(1) neutral(0.019) HMMPfam_p450,superfamily_Cytochrome_P450 EPS15 2060 genome.wustl.edu 37 1 51829567 51829567 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001981.2 -1 reviewed p.T777N 1.000 523 0% 421 49.4% 39 53.8% unknown(0) tolerated(0.46) - NULL SLC1A7 6512 genome.wustl.edu 37 1 53553755 53553755 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006671.4 -1 validated p.Q537* 1.000 102 0% 83 43.4% 0 - - - - NULL HSPB11 51668 genome.wustl.edu 37 1 54387426 54387426 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016126.2 -1 provisional p.S111 0.059 187 0% 106 35.8% 67 52.2% - - - superfamily_Gal_bind_like PARS2 25973 genome.wustl.edu 37 1 55223653 55223653 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152268.3 -1 validated p.Y394 0.005 166 0.6% 105 41% 14 35.7% - - - HMMPfam_HGTP_anticodon,superfamily_Anticodon-binding domain of Class II aaRS DHCR24 1718 genome.wustl.edu 37 1 55317977 55317977 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014762.3 -1 reviewed p.R494* 1.000 147 0% 98 55.1% 89 42.6% - - - NULL LOC100288209 100288209 genome.wustl.edu 37 1 55331075 55331075 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002342084.1 +1 model p.M252V 0.853 280 0% 192 46.4% 94 71.2% - - - NULL C8A 731 genome.wustl.edu 37 1 57349331 57349331 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000562.2 +1 reviewed p.E278K 0.004 100 0% 66 36.4% 0 - benign(0) tolerated(1) - HMMPfam_MACPF INADL 10207 genome.wustl.edu 37 1 62293182 62293182 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176877.2 +1 reviewed p.C636Y 1.000 349 0.3% 248 45.2% 8 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00228,superfamily_PDZ domain-like INADL 10207 genome.wustl.edu 37 1 62299455 62299455 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176877.2 +1 reviewed p.Q704* 1.000 244 0% 199 49.2% 5 20% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like INADL 10207 genome.wustl.edu 37 1 62321781 62321781 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176877.2 +1 reviewed p.L731P 0.046 220 0% 131 46.6% 10 60% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like L1TD1 54596 genome.wustl.edu 37 1 62672563 62672563 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019079.4 +1 validated p.P88H 0.001 51 0% 39 38.5% 0 - unknown(0) deleterious(0) - NULL KANK4 163782 genome.wustl.edu 37 1 62739820 62739820 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181712.4 -1 validated p.D319G 0.000 130 0% 83 42.2% 0 - probably_damaging(0.955) tolerated(0.27) neutral(0.432) NULL WDR78 79819 genome.wustl.edu 37 1 67390504 67390504 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024763.4 -1 validated p.G4D 1.000 109 0% 70 57.1% 3 33.3% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL CRYZ 1429 genome.wustl.edu 37 1 75172129 75172129 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130042.1 -1 reviewed p.Q281* 0.113 115 0% 88 46.6% 50 34% - - - HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd SLC44A5 204962 genome.wustl.edu 37 1 75693480 75693480 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152697.4 -1 validated p.I306F 0.001 333 0% 218 45.4% 0 - benign(0.002) tolerated(0.1) neutral(0.286) NULL NEXN 91624 genome.wustl.edu 37 1 78408157 78408157 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000342754 +1 known p.R457K 0.321 95 0% 85 48.2% 0 - - - - NULL FUBP1 8880 genome.wustl.edu 37 1 78422372 78422372 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003902.3 -1 reviewed p.T530 0.878 221 0% 183 40.4% 136 45.5% - - - NULL LPAR3 23566 genome.wustl.edu 37 1 85279805 85279805 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012152.2 -1 reviewed p.D262 0.934 64 0% 40 50% 10 50% - - - HMMPfam_7tm_1,superfamily_SSF81321 MCOLN2 255231 genome.wustl.edu 37 1 85403502 85403502 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153259.2 -1 reviewed p.A424V 1.000 217 0% 188 50% 3 100% possibly_damaging(0.854) tolerated(0.2) neutral(0.378) HMMPfam_Ion_trans BARHL2 343472 genome.wustl.edu 37 1 91177972 91177972 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020063.1 -1 validated p.R354Q 1.000 56 0% 52 44.2% 0 - probably_damaging(0.988) deleterious(0.01) deleterious(0.843) NULL KIAA1107 23285 genome.wustl.edu 37 1 92642519 92642519 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015237.2 +1 validated p.S152L 0.993 65 0% 66 19.7% 1 0% possibly_damaging(0.658) deleterious(0.02) deleterious(0.616) NULL PALMD 54873 genome.wustl.edu 37 1 100154699 100154699 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017734.4 +1 validated p.G295C 0.000 150 0.7% 103 44.7% 4 0% possibly_damaging(0.862) deleterious(0.01) deleterious(0.739) NULL LRRC39 127495 genome.wustl.edu 37 1 100621829 100621829 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144620.2 -1 provisional p.N186 1.000 247 0% 173 46.2% 0 - - - - HMMSmart_SM00369,superfamily_L domain-like PRPF38B 55119 genome.wustl.edu 37 1 109238366 109238366 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018061.2 +1 validated p.A107T 1.000 367 0% 240 45% 24 70.8% benign(0.248) tolerated(0.06) neutral(0.348) HMMPfam_PRP38 FNDC7 163479 genome.wustl.edu 37 1 109273298 109273298 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144937.1 +1 provisional p.P543S 1.000 275 0% 210 45.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00060,superfamily_Fibronectin type III CELSR2 1952 genome.wustl.edu 37 1 109813890 109813890 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001408.2 +1 reviewed p.R2550W 1.000 98 0% 83 45.8% 59 35.5% probably_damaging(0.997) tolerated(0.24) deleterious(0.504) HMMPfam_7tm_2 MYBPHL 343263 genome.wustl.edu 37 1 109840069 109840069 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001010985.2 -1 validated p.T135 0.161 40 0% 34 32.4% 0 - - - - HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin RBM15 64783 genome.wustl.edu 37 1 110884213 110884213 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022768.4 +1 validated p.R729K 1.000 69 0% 61 55.7% 8 37.5% probably_damaging(0.998) tolerated(0.2) deleterious(0.523) NULL KCND3 3752 genome.wustl.edu 37 1 112524688 112524688 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004980.3 -1 reviewed p.R221C 1.000 25 0% 17 41.2% 8 87.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_Voltage-gated potassium channels AMPD1 270 genome.wustl.edu 37 1 115221096 115221096 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000036.2 -1 reviewed p.R317H 1.000 259 0% 230 45.2% 0 - benign(0.154) deleterious(0.01) neutral(0.419) HMMPfam_A_deaminase,superfamily_SSF51556 MAN1A2 10905 genome.wustl.edu 37 1 118042063 118042063 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006699.3 +1 validated p.R522W 1.000 110 0% 110 57.3% 23 60.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47 PDE4DIP 9659 genome.wustl.edu 37 1 144930999 144930999 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001002811.1 -1 validated p.T237M 0.987 238 0% 126 31.7% 12 25% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) NULL HFE2 148738 genome.wustl.edu 37 1 145415544 145415544 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_213653.3 +1 reviewed p.R121 0.634 14 0.000 8 0.625 0 - - - - HMMPfam_RGM_N NUDT17 200035 genome.wustl.edu 37 1 145588452 145588452 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001012758.2 -1 validated p.R141* 0.371 108 0% 70 45.7% 1 0% - - - HMMPfam_NUDIX,superfamily_NUDIX_hydrolase GJA8 2703 genome.wustl.edu 37 1 147380380 147380380 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005267.4 +1 reviewed p.V100I 1.000 171 0% 107 25.2% 0 - benign(0.147) tolerated(0.3) neutral(0.042) HMMPfam_Connexin OTUD7B 56957 genome.wustl.edu 37 1 149915911 149915911 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020205.2 -1 validated p.R793W 0.531 208 0.5% 163 53.4% 21 52.3% benign(0.393) tolerated(0.1) neutral(0.412) NULL ADAMTSL4 54507 genome.wustl.edu 37 1 150531024 150531024 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019032.4 +1 reviewed p.E820K 0.806 57 0% 34 41.2% 2 0% benign(0) tolerated(0.57) neutral(0.006) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat RORC 6097 genome.wustl.edu 37 1 151785530 151785530 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005060.3 -1 reviewed p.C393Y 1.000 145 0% 91 11% 14 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain TCHHL1 126637 genome.wustl.edu 37 1 152058209 152058209 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001008536.1 -1 provisional p.N650S 0.000 321 0% 269 38.7% 0 - benign(0) tolerated(0.66) neutral(0.003) NULL FLG 2312 genome.wustl.edu 37 1 152282155 152282155 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002016.1 -1 reviewed p.A1736V 0.000 294 0% 231 47.2% 0 - unknown(0) tolerated(0.34) - NULL FLG 2312 genome.wustl.edu 37 1 152282168 152282168 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002016.1 -1 reviewed p.Q1732* 0.000 296 0% 232 47% 0 - - - - NULL S100A16 140576 genome.wustl.edu 37 1 153580611 153580611 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080388.1 -1 provisional p.T6M 0.977 85 0% 82 45.1% 533 47.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_EF-hand DENND4B 9909 genome.wustl.edu 37 1 153914558 153914558 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014856.2 -1 validated p.A281V 0.979 48 0% 36 55.6% 15 60% benign(0.406) tolerated(0.26) neutral(0.165) NULL DENND4B 9909 genome.wustl.edu 37 1 153915584 153915584 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014856.2 -1 validated p.R114C 0.765 171 0% 115 55.7% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL UBAP2L 9898 genome.wustl.edu 37 1 154228171 154228171 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000433615 +1 known p.A30T 0.807 316 0% 270 16.3% 202 21.2% - - - NULL PYGO2 90780 genome.wustl.edu 37 1 154932145 154932145 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138300.3 -1 validated p.A111T 1.000 39 0% 21 57.1% 32 46.8% unknown(0) tolerated(0.07) - NULL RXFP4 339403 genome.wustl.edu 37 1 155912003 155912003 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181885.2 +1 validated p.A168V 0.001 54 0% 28 57.1% 0 - benign(0.001) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 SLC25A44 9673 genome.wustl.edu 37 1 156169930 156169930 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014655.2 +1 validated p.R98W 0.987 131 0% 132 12.9% 22 9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Mitoch_carrier,HMMPfam_Mito_carr IQGAP3 128239 genome.wustl.edu 37 1 156504468 156504468 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178229.4 -1 validated p.A1189T 1.000 36 0% 33 39.4% 10 40% probably_damaging(0.969) tolerated(0.17) deleterious(0.470) HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP NES 10763 genome.wustl.edu 37 1 156642823 156642823 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006617.1 -1 reviewed p.A386D 1.000 248 0% 155 48.4% 15 6.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL OR10K1 391109 genome.wustl.edu 37 1 158435397 158435397 + Missense_Mutation SNP G G A rs189644667 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004473.1 +1 provisional p.G16S 1.000 253 0% 158 56.3% 0 - benign(0.229) tolerated(0.09) neutral(0.320) superfamily_SSF81321 DUSP23 54935 genome.wustl.edu 37 1 159752118 159752118 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017823.3 +1 validated p.R148Q 1.000 117 0% 83 56.6% 103 42.7% benign(0.008) tolerated(0.4) neutral(0.016) HMMPfam_DSPc,superfamily_SSF52799 FCRL6 343413 genome.wustl.edu 37 1 159779295 159779295 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004310.2 +1 validated p.P236 0.000 97 0% 60 18.3% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin IGSF9 57549 genome.wustl.edu 37 1 159901025 159901025 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135050.1 -1 validated p.V514M 1.000 116 0% 56 42.9% 26 65.3% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like IGSF9 57549 genome.wustl.edu 37 1 159904347 159904347 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135050.1 -1 validated p.R277W 0.984 88 1.1% 45 62.2% 21 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 SLAMF9 89886 genome.wustl.edu 37 1 159922143 159922143 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033438.3 -1 reviewed p.P191 0.001 238 0% 168 49.4% 0 - - - - superfamily_Immunoglobulin IGSF8 93185 genome.wustl.edu 37 1 160063044 160063044 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052868.2 -1 provisional p.V328M 1.000 50 0% 16 43.8% 125 42.4% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin ATP1A4 480 genome.wustl.edu 37 1 160129242 160129242 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144699.3 +1 reviewed p.R235H 1.000 182 0% 126 34.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M USP21 27005 genome.wustl.edu 37 1 161130461 161130461 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001014443.2 +1 reviewed p.R11C 1.000 57 0% 35 37.1% 26 46.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NR1I3 9970 genome.wustl.edu 37 1 161202704 161202704 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000502848 -1 known p.L91I 0.003 310 0% 205 48.8% 0 - benign(0.363) tolerated(0.28) neutral(0.147) superfamily_SSF57716 ATF6 22926 genome.wustl.edu 37 1 161833041 161833041 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007348.2 +1 validated p.Q553R 1.000 269 0% 206 42.2% 32 71.8% possibly_damaging(0.925) tolerated(0.42) neutral(0.388) NULL RXRG 6258 genome.wustl.edu 37 1 165398012 165398012 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006917.3 -1 reviewed p.S81T 0.998 101 0% 56 51.8% 0 - benign(0.062) tolerated(0.13) neutral(0.257) NULL DUSP27 92235 genome.wustl.edu 37 1 167095645 167095645 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080426.1 +1 provisional p.S426L 0.000 32 0% 24 62.5% 0 - benign(0) tolerated(0.13) neutral(0.253) NULL DUSP27 92235 genome.wustl.edu 37 1 167096118 167096118 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080426.1 +1 provisional p.V584I 0.118 72 0% 55 32.7% 0 - benign(0.001) deleterious(0) neutral(0.445) NULL DUSP27 92235 genome.wustl.edu 37 1 167096962 167096962 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080426.1 +1 provisional p.R865H 1.000 166 0% 119 49.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TIPRL 261726 genome.wustl.edu 37 1 168169272 168169272 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152902.3 +1 validated p.T269 0.013 146 0% 135 20.7% 45 24.4% - - - NULL LOC646870 646870 genome.wustl.edu 37 1 173332128 173332128 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XR_040282.2 -1 model NULL 0.941 79 0% 61 52.5% 0 - - - - - MRPS14 63931 genome.wustl.edu 37 1 174983899 174983899 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022100.1 -1 reviewed p.R98H 0.998 135 0% 90 43.3% 60 43.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ribosomal_S14,superfamily_SSF57716 ASTN1 460 genome.wustl.edu 37 1 176838101 176838101 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004319.1 -1 validated p.A1176T 1.000 275 0% 194 40.7% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ASTN1 460 genome.wustl.edu 37 1 176915177 176915177 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004319.1 -1 validated p.C712R 1.000 98 0% 68 48.5% 0 - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL RASAL2 9462 genome.wustl.edu 37 1 178252770 178252770 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_170692.2 +1 reviewed p.R74W 1.000 307 0% 192 48.4% 4 25% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) HMMSmart_PH,superfamily_SSF50729 CEP350 9857 genome.wustl.edu 37 1 180006190 180006190 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014810.4 +1 reviewed p.Q1359R 1.000 252 0% 153 45.8% 5 0% probably_damaging(0.954) deleterious(0) deleterious(0.842) NULL CACNA1E 777 genome.wustl.edu 37 1 181700354 181700354 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000721.2 +1 reviewed p.R762C 1.000 312 0% 207 55.1% 0 - probably_damaging(0.991) deleterious(0.03) deleterious(0.808) NULL RNASEL 6041 genome.wustl.edu 37 1 182554743 182554743 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021133.2 -1 reviewed p.R400H 0.000 113 0% 94 51.1% 8 50% benign(0.047) tolerated(0.19) neutral(0.053) HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) DHX9 1660 genome.wustl.edu 37 1 182827274 182827274 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001357.4 +1 reviewed p.L237M 0.993 269 0% 202 46.5% 71 50.7% probably_damaging(0.963) tolerated(0.1) deleterious(0.692) HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like SHCBP1L 81626 genome.wustl.edu 37 1 182908489 182908489 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030933.2 -1 validated p.A300T 1.000 173 0.6% 144 50% 0 - possibly_damaging(0.814) tolerated(0.26) neutral(0.342) NULL SHCBP1L 81626 genome.wustl.edu 37 1 182921961 182921961 + Missense_Mutation SNP G G A rs184524719 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030933.2 -1 validated p.A103V 0.926 14 0% 18 72.2% 0 - probably_damaging(0.959) deleterious(0) deleterious(0.847) NULL IVNS1ABP 10625 genome.wustl.edu 37 1 185269131 185269131 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006469.4 -1 validated p.R501W 1.000 231 0% 170 46.5% 160 45.6% probably_damaging(0.995) deleterious(0.03) deleterious(0.822) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain HMCN1 83872 genome.wustl.edu 37 1 185902768 185902768 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031935.2 +1 reviewed p.V547A 1.000 272 0.4% 200 48.5% 1 0% benign(0.006) tolerated(0.48) neutral(0.011) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 185969236 185969236 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031935.2 +1 reviewed p.P1312S 1.000 165 0% 159 52.8% 0 - probably_damaging(0.999) tolerated(0.38) deleterious(0.508) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 185969339 185969339 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031935.2 +1 reviewed p.T1346N 0.991 159 0% 154 51.3% 0 - benign(0.005) tolerated(0.35) neutral(0.021) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin HMCN1 83872 genome.wustl.edu 37 1 186045696 186045696 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031935.2 +1 reviewed p.L2809 1.000 248 0% 160 40.6% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin TPR 7175 genome.wustl.edu 37 1 186301442 186301442 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003292.2 -1 reviewed p.R1830H 0.996 229 0% 180 44.4% 63 41.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL C1orf53 388722 genome.wustl.edu 37 1 197875017 197875017 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001024594.2 +1 validated p.A119V 0.998 175 0% 116 45.7% 18 44.4% probably_damaging(0.978) tolerated(0.07) deleterious(0.740) NULL LAD1 3898 genome.wustl.edu 37 1 201355600 201355600 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005558.3 -1 reviewed p.A297T 0.000 54 0% 30 76.7% 83 46.9% benign(0.002) tolerated(0.51) neutral(0.009) NULL CSRP1 1465 genome.wustl.edu 37 1 201459366 201459366 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004078.2 -1 reviewed p.Y73 0.574 114 0% 104 55.8% 150 38.6% - - - superfamily_Glucocorticoid receptor-like (DNA-binding domain) LGR6 59352 genome.wustl.edu 37 1 202245467 202245467 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001017403.1 +1 reviewed p.P154 0.959 43 0% 31 29% 0 - - - - HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like KDM5B 10765 genome.wustl.edu 37 1 202727617 202727617 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006618.3 -1 validated p.A367S 1.000 219 0% 162 48.8% 32 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FMOD 2331 genome.wustl.edu 37 1 203311556 203311556 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002023.3 -1 reviewed p.R349H 1.000 43 0% 30 43.3% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52058 PLEKHA6 22874 genome.wustl.edu 37 1 204226828 204226828 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014935.2 -1 validated p.R393C 1.000 46 0% 23 21.7% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NFASC 23114 genome.wustl.edu 37 1 204943400 204943400 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015090.3 +1 reviewed p.P469L 1.000 91 0% 58 31% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 SRGAP2 23380 genome.wustl.edu 37 1 206613370 206613370 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000414359 +1 known p.L528I 1.000 353 0% 252 46% 12 50% possibly_damaging(0.68) tolerated(0.44) neutral(0.255) HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP LGTN 100529141 genome.wustl.edu 37 1 206782805 206782805 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006893.2 -1 reviewed p.T85 0.898 233 0% 159 40.9% 49 57.1% - - - NULL C1orf116 79098 genome.wustl.edu 37 1 207196307 207196307 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_023938.5 -1 validated p.G268W 0.000 692 0% 536 46.1% 15 60% benign(0.001) tolerated(0.07) neutral(0.319) NULL PLXNA2 5362 genome.wustl.edu 37 1 208234128 208234128 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025179.3 -1 reviewed p.V881M 0.991 39 0% 31 61.3% 2 50% benign(0.016) tolerated(0.26) neutral(0.035) HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains LAMB3 3914 genome.wustl.edu 37 1 209799116 209799116 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000228.2 -1 reviewed p.R618H 0.000 55 0% 32 50% 138 51.4% benign(0) tolerated(0.21) neutral(0.044) NULL RCOR3 55758 genome.wustl.edu 37 1 211486098 211486098 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136223.1 +1 validated p.A371V 1.000 198 0% 172 14% 13 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding RD3 343035 genome.wustl.edu 37 1 211652449 211652449 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_183059.2 -1 reviewed p.V173M 1.000 28 0% 19 36.8% 0 - probably_damaging(0.978) deleterious(0.01) deleterious(0.826) NULL INTS7 25896 genome.wustl.edu 37 1 212115383 212115383 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015434.2 -1 provisional p.Q891R 1.000 364 0% 275 22.5% 24 16.6% possibly_damaging(0.797) deleterious(0.03) deleterious(0.664) NULL DTL 51514 genome.wustl.edu 37 1 212274425 212274425 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016448.2 +1 validated p.P698L 0.980 107 0% 52 26.9% 25 48% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ANGEL2 90806 genome.wustl.edu 37 1 213180442 213180445 + Frame_Shift_Del DEL AAAA AAAA - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 AAAA AAAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000310246 -1 known p.F223fs 0.007:0.006:0.011:0.009 - - - - - - - - - HMMPfam_Exo_endo_phos PROX1 5629 genome.wustl.edu 37 1 214171174 214171174 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002763.3 +1 provisional p.S432 1.000 131 0% 92 23.9% 0 - - - - HMMPfam_Prox1 PTPN14 5784 genome.wustl.edu 37 1 214558018 214558018 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005401.4 -1 reviewed p.V394I 0.993 145 0% 108 50% 13 46.1% benign(0) tolerated(0.49) neutral(0.011) NULL GPATCH2 55105 genome.wustl.edu 37 1 217793681 217793681 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018040.2 -1 provisional p.R73W 1.000 164 0% 126 50% 13 69.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RAB3GAP2 25782 genome.wustl.edu 37 1 220379276 220379276 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012414.3 -1 reviewed p.R229C 1.000 197 0% 128 32.8% 9 33.3% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL DISP1 84976 genome.wustl.edu 37 1 223177080 223177080 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032890.2 +1 reviewed p.E781K 1.000 72 0% 58 44.8% 5 60% probably_damaging(0.988) tolerated(0.12) deleterious(0.698) HMMPfam_Patched TP53BP2 7159 genome.wustl.edu 37 1 223985959 223985959 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001031685.2 -1 reviewed p.A636T 0.992 159 0% 133 41.4% 33 36.3% probably_damaging(0.996) tolerated(0.82) neutral(0.462) NULL DNAH14 127602 genome.wustl.edu 37 1 225528250 225528250 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001373.1 +1 validated p.G3416C 0.970 282 0% 216 46.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TMEM63A 9725 genome.wustl.edu 37 1 226041358 226041358 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014698.2 -1 validated p.T590M 1.000 48 0% 32 50% 68 42.6% possibly_damaging(0.933) deleterious(0) deleterious(0.824) HMMPfam_DUF221 LEFTY1 10637 genome.wustl.edu 37 1 226074546 226074546 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020997.2 -1 reviewed p.V328I 0.944 61 0% 23 47.8% 5 40% possibly_damaging(0.719) tolerated(0.07) deleterious(0.580) HMMSmart_TGFB,superfamily_SSF57501 ITPKB 3707 genome.wustl.edu 37 1 226924446 226924446 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002221.3 -1 reviewed p.P238 0.000 21 0% 15 53.3% 19 36.8% - - - NULL CDC42BPA 8476 genome.wustl.edu 37 1 227300593 227300593 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003607.3 -1 reviewed p.R557* 1.000 260 0% 196 50% 3 0% - - - NULL PRSS38 339501 genome.wustl.edu 37 1 228033727 228033727 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_183062.2 +1 validated p.R267* 0.058 180 0% 112 41.1% 0 - - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys GUK1 2987 genome.wustl.edu 37 1 228335142 228335142 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000858.5 +1 validated p.R96H 0.995 61 0% 40 47.5% 563 41.9% probably_damaging(0.961) deleterious(0) deleterious(0.849) HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases GJC2 57165 genome.wustl.edu 37 1 228345955 228345955 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020435.2 +1 reviewed p.G166S 0.000 6 0.000 5 0.800 2 100% probably_damaging(0.992) tolerated(0.78) neutral(0.449) NULL URB2 9816 genome.wustl.edu 37 1 229794924 229794924 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014777.2 +1 provisional p.D1485 0.958 134 0% 82 43.9% 35 48.5% - - - HMMPfam_Urb2 SIPA1L2 57568 genome.wustl.edu 37 1 232579400 232579400 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020808.3 -1 validated p.D1129N 1.000 188 0% 152 46.7% 7 28.5% probably_damaging(0.976) tolerated(0.29) neutral(0.447) NULL KIAA1804 84451 genome.wustl.edu 37 1 233507866 233507866 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032435.2 +1 validated p.P545 0.902 98 0% 67 50.7% 13 69.2% - - - NULL LYST 1130 genome.wustl.edu 37 1 235826246 235826246 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000081.2 -1 reviewed p.A3800 0.008 113 0% 73 41.1% 4 50% - - - NULL LGALS8 3964 genome.wustl.edu 37 1 236708109 236708109 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006499.3 +1 reviewed p.R275H 1.000 229 0% 147 41.5% 23 30.4% possibly_damaging(0.817) deleterious(0.01) deleterious(0.715) HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl RYR2 6262 genome.wustl.edu 37 1 237777401 237777401 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001035.2 +1 reviewed p.L1658H 1.000 113 0% 72 34.7% 0 - probably_damaging(1) - - NULL RYR2 6262 genome.wustl.edu 37 1 237819174 237819174 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001035.2 +1 reviewed p.A2673 0.276 131 0% 96 37.5% 0 - - - - NULL RYR2 6262 genome.wustl.edu 37 1 237947309 237947309 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001035.2 +1 reviewed p.A4099 0.000 95 0% 73 37% 0 - - - - NULL GREM2 64388 genome.wustl.edu 37 1 240656396 240656396 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022469.3 -1 reviewed p.R127H 0.999 61 0% 31 41.9% 0 - possibly_damaging(0.841) deleterious(0.01) deleterious(0.727) HMMPfam_DAN,HMMSmart_CT WDR64 128025 genome.wustl.edu 37 1 241875121 241875121 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144625.4 +1 validated p.S41F 1.000 490 0% 302 44% 0 - probably_damaging(0.983) deleterious(0.02) deleterious(0.812) HMMSmart_SM00320,superfamily_WD40 repeat-like SDCCAG8 10806 genome.wustl.edu 37 1 243493919 243493919 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006642.2 +1 validated p.Q382 1.000 164 0% 91 49.5% 4 25% - - - NULL KIF26B 55083 genome.wustl.edu 37 1 245775221 245775221 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018012.3 +1 provisional p.V681M 1.000 59 3.4% 42 50% 1 0% benign(0) tolerated(1) - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases NLRP3 114548 genome.wustl.edu 37 1 247587244 247587244 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001079821.2 +1 reviewed p.R167C 0.978 137 0% 121 48.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL OR2M5 127059 genome.wustl.edu 37 1 248309151 248309151 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004690.1 +1 provisional p.R234 0.000 405 0% 352 51.1% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR2T3 343173 genome.wustl.edu 37 1 248637608 248637608 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005495.1 +1 provisional p.*319 0.000 280 0% 200 19% 0 - - - - NULL OR2T10 127069 genome.wustl.edu 37 1 248757065 248757065 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004693.1 -1 provisional p.R2Q 0.039 18 0% 23 43.5% 0 - benign(0.08) tolerated(0.06) neutral(0.328) superfamily_Family A G protein-coupled receptor-like PXDN 7837 genome.wustl.edu 37 2 1652897 1652897 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012293.1 -1 validated p.C885 0.996 15 0.000 8 0.625 6 0% - - - HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases TSSC1 7260 genome.wustl.edu 37 2 3341826 3341826 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003310.2 -1 validated p.P74H 1.000 317 0% 224 48.7% 57 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_WD40_like ASAP2 8853 genome.wustl.edu 37 2 9531245 9531245 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003887.2 +1 reviewed p.D813G 1.000 135 0% 99 44.4% 3 66.6% benign(0.277) tolerated(0.28) neutral(0.061) NULL TAF1B 9014 genome.wustl.edu 37 2 9985365 9985365 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005680.2 +1 reviewed p.R12H 0.543 248 0% 156 37.2% 2 0% possibly_damaging(0.87) tolerated(0.09) deleterious(0.635) NULL UNQ5830 400943 genome.wustl.edu 37 2 10143693 10143693 + RNA SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XR_041686.1 -1 model NULL 0.002 219 0% 150 44% 0 - - - - - GREB1 9687 genome.wustl.edu 37 2 11773103 11773103 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014668.3 +1 reviewed p.Q1635H 1.000 161 0% 102 46.1% 46 60.8% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL MSGN1 343930 genome.wustl.edu 37 2 17998265 17998265 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001105569.1 +1 provisional p.Q160 1.000 42 0% 31 16.1% 0 - - - - HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic ADCY3 109 genome.wustl.edu 37 2 25141412 25141412 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004036.3 -1 reviewed p.A149T 0.997 92 0% 48 12.5% 8 12.5% benign(0.009) tolerated(0.45) neutral(0.013) NULL GPR113 165082 genome.wustl.edu 37 2 26533814 26533814 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145168.1 -1 validated p.T928A 0.055 109 0% 80 37.5% 0 - benign(0.018) tolerated(1) neutral(0.001) HMMPfam_7tm_2 CCDC164 92749 genome.wustl.edu 37 2 26654829 26654829 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145038.2 +1 validated p.C281 0.002 234 0% 173 44.5% 0 - - - - NULL C2orf70 339778 genome.wustl.edu 37 2 26800394 26800394 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001105519.1 +1 predicted p.Q120R 0.991 96 0% 56 39.3% 3 33.3% benign(0) tolerated(0.92) - NULL AGBL5 60509 genome.wustl.edu 37 2 27275943 27275943 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021831.5 +1 validated p.A39 0.330 137 0% 110 40% 27 55.5% - - - NULL C2orf53 339779 genome.wustl.edu 37 2 27360111 27360111 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178553.3 -1 validated p.A363T 0.522 198 0% 103 54.4% 0 - benign(0.359) tolerated(0.33) neutral(0.138) NULL SLC5A6 8884 genome.wustl.edu 37 2 27424857 27424857 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021095.2 -1 validated p.P454H 0.721 102 0% 50 42% 29 62% benign(0.186) tolerated(0.18) neutral(0.074) HMMPfam_SSF CAD 790 genome.wustl.edu 37 2 27460605 27460605 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004341.3 +1 reviewed p.R1528Q 1.000 62 0% 46 39.1% 44 54.5% probably_damaging(0.999) tolerated(0.25) deleterious(0.527) superfamily_SSF51556 NRBP1 29959 genome.wustl.edu 37 2 27656172 27656172 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013392.2 +1 validated p.S11N 1.000 144 0% 112 39.3% 106 48.1% possibly_damaging(0.662) deleterious(0.01) deleterious(0.640) NULL TRMT61B 55006 genome.wustl.edu 37 2 29093120 29093120 + Silent SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017910.3 -1 validated p.G8 0.000 58 0% 39 64.1% 11 45.4% - - - NULL GALNT14 79623 genome.wustl.edu 37 2 31147091 31147091 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024572.2 -1 validated p.R425Q 1.000 815 0.1% 629 45.9% 0 - probably_damaging(0.994) tolerated(0.22) deleterious(0.494) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins EHD3 30845 genome.wustl.edu 37 2 31457587 31457587 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014600.2 +1 validated p.L34 1.000 86 0% 53 34% 2 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases MEMO1 51072 genome.wustl.edu 37 2 32117134 32117134 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000422936 -1 known p.S51L 1.000 179 0% 134 46.3% 6 0% - - - HMMPfam_Memo ENSG00000181250 0 genome.wustl.edu 37 2 33952729 33952729 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000322472 -1 known p.S38 1.000 101 0% 69 42% 1 100% - - - HMMPfam_MARVEL PREPL 9581 genome.wustl.edu 37 2 44569610 44569610 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006036.4 -1 reviewed p.A233V 0.962 278 0% 212 38.7% 14 64.2% benign(0.425) tolerated(0.39) neutral(0.154) HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain SIX2 10736 genome.wustl.edu 37 2 45236184 45236184 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016932.4 -1 reviewed p.Q22 1.000 12 0% 15 66.7% 0 - - - - NULL SRBD1 55133 genome.wustl.edu 37 2 45778293 45778293 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018079.4 -1 validated p.G549D 1.000 155 0% 131 43.5% 12 33.3% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_SM00732 EPAS1 2034 genome.wustl.edu 37 2 46611733 46611733 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001430.4 +1 reviewed p.P849 0.108 64 0% 35 22.9% 19 21% - - - HMMPfam_HIF-1a_CTAD NRXN1 9378 genome.wustl.edu 37 2 51149005 51149005 + Splice_Site SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135659.1 -1 reviewed e5+2 1.000 161 0% 137 23.4% 0 - - - - - ERLEC1 27248 genome.wustl.edu 37 2 54028577 54028577 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015701.3 +1 validated p.P190H 1.000 119 0% 110 46.4% 34 8.8% benign(0.198) tolerated(0.08) neutral(0.319) superfamily_Mannose 6-phosphate receptor domain,HMMPfam_PRKCSH SPTBN1 6711 genome.wustl.edu 37 2 54853220 54853220 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003128.2 +1 reviewed p.R498H 1.000 158 0% 121 47.9% 56 62.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54858040 54858040 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003128.2 +1 reviewed p.L952 1.000 39 0% 39 38.5% 58 58.6% - - - HMMPfam_Spectrin,HMMSmart_SM00150 SPTBN1 6711 genome.wustl.edu 37 2 54858389 54858389 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003128.2 +1 reviewed p.R1069W 1.000 97 0% 65 55.4% 50 44% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54872483 54872483 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003128.2 +1 reviewed p.V1463M 1.000 147 0% 82 52.4% 91 49.4% benign(0.167) deleterious(0) neutral(0.460) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SPTBN1 6711 genome.wustl.edu 37 2 54873365 54873365 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003128.2 +1 reviewed p.R1540H 1.000 51 0% 42 38.1% 77 38.9% possibly_damaging(0.921) tolerated(0.12) deleterious(0.631) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat MTIF2 4528 genome.wustl.edu 37 2 55471286 55471286 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005369.1 -1 reviewed p.R397H 1.000 377 0% 244 50.8% 38 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor EFEMP1 2202 genome.wustl.edu 37 2 56144999 56144999 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001039348.1 -1 reviewed p.S106 0.807 210 0% 153 48.4% 0 - - - - NULL VRK2 7444 genome.wustl.edu 37 2 58386773 58386773 + Missense_Mutation SNP G G A rs192754138 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130480.1 +1 reviewed p.R491H 0.001 475 0% 380 18.7% 33 24.2% benign(0.018) deleterious(0.02) neutral(0.384) NULL PAPOLG 64895 genome.wustl.edu 37 2 61019286 61019286 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022894.2 +1 reviewed p.R514Q 1.000 96 0% 73 39.7% 8 37.5% benign(0.071) tolerated(0.51) neutral(0.014) NULL AAK1 22848 genome.wustl.edu 37 2 69757768 69757768 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014911.3 -1 reviewed p.A243T 1.000 285 0% 207 44.9% 2 50% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SFXN5 94097 genome.wustl.edu 37 2 73195646 73195646 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144579.2 -1 validated p.A253V 1.000 65 0% 37 48.6% 27 37% benign(0.068) tolerated(0.48) neutral(0.015) HMMPfam_Mtc SFXN5 94097 genome.wustl.edu 37 2 73226092 73226092 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144579.2 -1 validated p.A174T 0.987 184 0% 119 17.6% 9 11.1% probably_damaging(0.989) deleterious(0.02) deleterious(0.823) HMMPfam_Mtc DCTN1 1639 genome.wustl.edu 37 2 74588751 74588751 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004082.3 -1 reviewed p.Q1238E 1.000 153 0% 121 35.5% 204 46.5% benign(0.069) tolerated(0.19) neutral(0.054) NULL HTRA2 27429 genome.wustl.edu 37 2 74758793 74758793 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013247.4 +1 reviewed p.R337S 1.000 351 0% 242 42.6% 59 49.1% probably_damaging(0.976) tolerated(0.2) neutral(0.467) HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases C2orf65 130951 genome.wustl.edu 37 2 74802659 74802659 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138804.3 -1 predicted p.P327L 0.987 137 0% 79 46.8% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SEMA4F 10505 genome.wustl.edu 37 2 74902699 74902699 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004263.3 +1 provisional p.V474I 0.800 233 0% 190 41.6% 3 66.6% benign(0.005) tolerated(1) - HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain KCMF1 56888 genome.wustl.edu 37 2 85276621 85276621 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020122.4 +1 validated p.R245Q 1.000 163 0% 158 47.5% 121 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GNLY 10578 genome.wustl.edu 37 2 85923115 85923115 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006433.3 +1 reviewed p.R64H 0.000 164 0% 102 48% 24 0% benign(0.125) tolerated(0.13) neutral(0.263) HMMSmart_SM00741 KRCC1 51315 genome.wustl.edu 37 2 88327388 88327388 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016618.1 -1 provisional p.R232H 0.998 335 0% 259 20.5% 39 20.5% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL ZNF2 7549 genome.wustl.edu 37 2 95843255 95843255 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000453539 +1 known p.V21M 0.537 257 0% 174 46.6% 7 57.1% possibly_damaging(0.922) deleterious(0) deleterious(0.816) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) SNRNP200 23020 genome.wustl.edu 37 2 96951047 96951047 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014014.3 -1 reviewed p.N1345 0.969 35 0% 26 26.9% 103 49.5% - - - HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases SNRNP200 23020 genome.wustl.edu 37 2 96952449 96952449 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014014.3 -1 reviewed p.R1269Q 1.000 248 0.4% 174 43.7% 128 54.6% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Sec63,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases ITPRIPL1 150771 genome.wustl.edu 37 2 96992564 96992564 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000420728 +1 known p.P97L 0.000 240 0% 166 51.2% 0 - - - - NULL FER1L5 90342 genome.wustl.edu 37 2 97364418 97364418 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001113382.1 +1 provisional p.R1483H 0.969 93 0% 64 28.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL FAM178B 51252 genome.wustl.edu 37 2 97587375 97587375 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001122646.2 -1 validated p.A403V 0.001 45 0% 33 45.5% 0 - benign(0.425) tolerated(0.77) neutral(0.139) NULL ANKRD36 375248 genome.wustl.edu 37 2 97899538 97899538 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000461153 +1 known p.D1170 0.094 494 0% 429 14.9% 0 - - - - NULL ANKRD36 375248 genome.wustl.edu 37 2 97911148 97911148 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000461153 +1 known p.T1411 0.987 477 0% 387 20.2% 4 25% - - - NULL ZAP70 7535 genome.wustl.edu 37 2 98353986 98353986 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001079.3 +1 reviewed p.M447T 1.000 105 0% 55 50.9% 3 0% possibly_damaging(0.783) tolerated(0.33) neutral(0.317) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) C2orf55 343990 genome.wustl.edu 37 2 99438762 99438762 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207362.2 -1 validated p.A658 0.000 29 0% 22 63.6% 4 75% - - - NULL AFF3 3899 genome.wustl.edu 37 2 100210148 100210148 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001025108.1 -1 reviewed p.V684I 0.990 26 0% 11 36.4% 0 - possibly_damaging(0.808) tolerated(0.32) neutral(0.328) HMMPfam_AF-4 AFF3 3899 genome.wustl.edu 37 2 100210457 100210457 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001025108.1 -1 reviewed p.V581M 0.536 15 0% 21 28.6% 0 - probably_damaging(0.979) deleterious(0.02) deleterious(0.805) HMMPfam_AF-4 AFF3 3899 genome.wustl.edu 37 2 100217938 100217938 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001025108.1 -1 reviewed p.E469K 1.000 25 0.000 8 0.500 0 - possibly_damaging(0.837) deleterious(0.02) deleterious(0.703) HMMPfam_AF-4 LONRF2 164832 genome.wustl.edu 37 2 100916234 100916234 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198461.3 -1 validated p.P404 0.000 122 0% 107 49.5% 2 50% - - - superfamily_TPR-like SLC9A2 6549 genome.wustl.edu 37 2 103299876 103299876 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003048.3 +1 validated p.H387 0.816 288 0% 192 45.8% 0 - - - - HMMPfam_Na_H_Exchanger NPHP1 4867 genome.wustl.edu 37 2 110922295 110922295 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000272.3 -1 reviewed p.H247 0.782 127 0% 117 50.4% 5 40% - - - NULL FBLN7 129804 genome.wustl.edu 37 2 112922611 112922611 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153214.2 +1 validated p.G90D 1.000 120 0% 104 49% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain RGPD8 727851 genome.wustl.edu 37 2 113147475 113147475 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000302558 -1 known p.T1016S 0.030 148 0% 125 35.2% 5 0% possibly_damaging(0.496) tolerated(0.62) neutral(0.170) NULL CKAP2L 150468 genome.wustl.edu 37 2 113509900 113509900 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152515.3 -1 validated p.E516K 0.401 507 0% 414 46.1% 6 66.6% probably_damaging(0.982) tolerated(0.07) deleterious(0.746) NULL ENSG00000251207 0 genome.wustl.edu 37 2 114415498 114415498 + RNA SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000514936 -1 novel NULL 0.993 35 0% 20 40% 0 - - - - - TMEM177 80775 genome.wustl.edu 37 2 120439309 120439309 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001105198.1 +1 validated p.R294C 0.999 31 0% 21 61.9% 40 47.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MKI67IP 84365 genome.wustl.edu 37 2 122485331 122485331 + Missense_Mutation SNP C C T rs187635665 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032390.4 -1 reviewed p.R284Q 0.973 390 0% 299 38.5% 53 49% possibly_damaging(0.559) deleterious(0.02) deleterious(0.574) NULL BIN1 274 genome.wustl.edu 37 2 127825781 127825781 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_139343.1 -1 reviewed p.L190 0.996 152 0% 75 44% 3 66.6% - - - HMMPfam_BAR,HMMSmart_SM00721 MYO7B 4648 genome.wustl.edu 37 2 128379624 128379624 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080527.1 +1 provisional p.R1172H 1.000 76 0% 49 57.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MyTH4,HMMSmart_SM00139 LOC653269 653269 genome.wustl.edu 37 2 131220931 131220931 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_928585.2 -1 model p.R896C 1.000 117 0% 59 50.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain LOC653269 653269 genome.wustl.edu 37 2 131266313 131266313 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_928585.2 -1 model p.V166M 0.000 340 0% 240 28.3% 0 - benign(0.232) tolerated(1) neutral(0.023) HMMPfam_Ank,superfamily_Ankyrin repeat NCKAP5 344148 genome.wustl.edu 37 2 134060675 134060675 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207363.2 -1 validated p.M26T 1.000 233 0% 166 53.6% 0 - benign(0.001) deleterious(0) neutral(0.445) NULL UBXN4 23190 genome.wustl.edu 37 2 136519482 136519482 + Splice_Site SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014607.3 +1 validated e6+1 1.000 103 0% 43 93% 1 100% - - - - LCT 3938 genome.wustl.edu 37 2 136566158 136566158 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002299.2 -1 reviewed p.T1253 0.643 266 0% 222 91% 0 - - - - HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat KIF5C 3800 genome.wustl.edu 37 2 149799200 149799200 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000435030 +1 known p.R172Q 1.000 268 0% 232 43.1% 1 0% probably_damaging(0.977) deleterious(0.01) deleterious(0.825) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF5C 3800 genome.wustl.edu 37 2 149868126 149868126 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000435030 +1 known p.T937M 0.946 109 0% 80 96.3% 0 - probably_damaging(0.973) deleterious(0.02) deleterious(0.798) NULL TNFAIP6 7130 genome.wustl.edu 37 2 152236046 152236048 + In_Frame_Del DEL AAA AAA - rs71403164 byCluster TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 AAA AAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007115.2 +1 reviewed p.*278in_frame_del 0.961:0.953 - - - - - - - - - NULL ACVR1 90 genome.wustl.edu 37 2 158617589 158617589 + Missense_Mutation SNP C C T rs121912679 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001105.4 -1 reviewed p.G356D 1.000 77 0% 74 37.8% 18 61.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Kinase_like,HMMPfam_Pkinase TANC1 85461 genome.wustl.edu 37 2 160028734 160028734 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033394.2 +1 validated p.A485V 0.995 239 0% 142 20.4% 4 75% benign(0) tolerated(0.11) neutral(0.272) NULL BAZ2B 29994 genome.wustl.edu 37 2 160189112 160189112 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013450.2 -1 validated p.H1961R 1.000 179 0% 129 90.7% 24 100% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD SCN3A 6328 genome.wustl.edu 37 2 166032861 166032861 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006922.3 -1 reviewed p.R15H 1.000 310 0% 280 95.7% 0 - possibly_damaging(0.936) deleterious(0.04) deleterious(0.730) NULL SCN2A 6326 genome.wustl.edu 37 2 166245256 166245256 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040142.1 +1 reviewed p.R1647H 1.000 482 0% 381 43% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels LRP2 4036 genome.wustl.edu 37 2 170062080 170062080 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004525.2 -1 reviewed p.R2542C 1.000 97 1% 65 93.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 KLHL23 151230 genome.wustl.edu 37 2 170597966 170597966 + Nonsense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144711.4 +1 validated p.G429* 1.000 125 0% 114 23.7% 15 6.6% - - - HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central TTN 7273 genome.wustl.edu 37 2 179402474 179402474 + Missense_Mutation SNP G G A rs143556947 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000356127 -1 known p.R30584C 1.000 84 0% 53 90.6% 0 - probably_damaging(1) - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179428621 179428621 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000356127 -1 known p.S24843I 1.000 125 0% 82 93.9% 0 - probably_damaging(0.997) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179547473 179547473 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000356127 -1 known p.Y9771 0.771 614 0.2% 453 28.9% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179645963 179645963 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_133379.3 -1 reviewed p.T1136 0.980 512 0% 358 45% 0 - - - - HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 PDE1A 5136 genome.wustl.edu 37 2 183095749 183095749 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005019.3 -1 validated p.R192H 1.000 284 0% 199 95% 0 - possibly_damaging(0.474) deleterious(0.01) deleterious(0.562) superfamily_SSF109604 FRZB 2487 genome.wustl.edu 37 2 183699583 183699583 + Missense_Mutation SNP C C T rs138459633 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001463.3 -1 reviewed p.R324H 1.000 333 0.3% 275 16% 1 0% benign(0.016) tolerated(0.11) neutral(0.272) NULL SDPR 8436 genome.wustl.edu 37 2 192700678 192700678 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004657.5 -1 reviewed p.A417T 0.384 24 0% 20 45% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SLC39A10 57181 genome.wustl.edu 37 2 196545314 196545314 + Missense_Mutation SNP G G A rs188606584 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127257.1 +1 validated p.R183H 0.776 65 0% 52 13.5% 11 18.1% benign(0.001) tolerated(0.06) neutral(0.323) NULL SLC39A10 57181 genome.wustl.edu 37 2 196548548 196548548 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127257.1 +1 validated p.E378 0.992 202 0% 142 92.3% 11 100% - - - NULL DNAH7 56171 genome.wustl.edu 37 2 196674544 196674544 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018897.2 -1 validated p.C3271 1.000 181 0% 104 45.2% 1 0% - - - NULL DNAH7 56171 genome.wustl.edu 37 2 196729054 196729054 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018897.2 -1 validated p.R2442H 1.000 358 0% 261 19.9% 1 0% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) superfamily_P-loop containing nucleoside triphosphate hydrolases PGAP1 80055 genome.wustl.edu 37 2 197784739 197784739 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024989.3 -1 validated p.A95T 1.000 208 0% 135 93.3% 0 - probably_damaging(0.985) deleterious(0.01) deleterious(0.838) HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases TYW5 129450 genome.wustl.edu 37 2 200797978 200797978 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001039693.2 -1 validated p.P254S 1.000 328 0% 229 20.5% 5 0% benign(0.001) tolerated(0.21) neutral(0.044) HMMSmart_SM00558,superfamily_Clavaminate synthase-like CASP8 841 genome.wustl.edu 37 2 202149791 202149791 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080125.1 +1 reviewed p.P411H 1.000 107 0% 87 94.3% 37 94.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_CYS,superfamily_Caspase-like NRP2 8828 genome.wustl.edu 37 2 206588596 206588596 + Missense_Mutation SNP C C T rs113330212 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_201266.1 +1 reviewed p.T251M 1.000 213 0% 144 50.7% 8 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ADAM23 8745 genome.wustl.edu 37 2 207437917 207437917 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003812.2 +1 reviewed p.Q579* 1.000 357 0% 281 96.1% 0 - - - - HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin) KLF7 8609 genome.wustl.edu 37 2 207988559 207988559 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003709.2 -1 provisional p.N224 1.000 168 0% 103 42.7% 1 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers MAP2 4133 genome.wustl.edu 37 2 210558944 210558944 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002374.3 +1 reviewed p.S684G 0.977 245 0% 194 37.6% 1 0% probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_MAP2_projctn PECR 55825 genome.wustl.edu 37 2 216931148 216931148 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018441.5 -1 validated p.R73Q 0.002 364 0.3% 283 92.9% 6 100% benign(0.001) tolerated(0.7) neutral(0.002) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains IGFBP2 3485 genome.wustl.edu 37 2 217525405 217525405 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000597.2 +1 validated p.V190M 0.993 94 0% 84 88.1% 1842 98.9% benign(0.287) tolerated(0.07) neutral(0.407) NULL TNP1 7141 genome.wustl.edu 37 2 217724660 217724660 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003284.3 -1 validated p.Y33C 1.000 542 0% 387 14% 0 - probably_damaging(0.97) - - HMMPfam_TP1,PatternScan_TP1 WNT6 7475 genome.wustl.edu 37 2 219736481 219736481 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006522.3 +1 reviewed p.K192 1.000 60 0% 38 44.7% 0 - - - - HMMPfam_wnt,HMMSmart_WNT1 GLB1L 79411 genome.wustl.edu 37 2 220104633 220104633 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000440853 -1 known p.S176 0.000 97 0% 103 18.4% 0 - - - - NULL STK11IP 114790 genome.wustl.edu 37 2 220473920 220473920 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000456909 +1 known p.A637 0.956 109 0% 66 95.5% 6 100% - - - NULL ACSL3 2181 genome.wustl.edu 37 2 223783810 223783810 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004457.3 +1 reviewed p.R232Q 1.000 173 0% 131 41.2% 34 35.2% benign(0.021) tolerated(0.21) neutral(0.045) HMMPfam_AMP-binding,superfamily_SSF56801 DOCK10 55619 genome.wustl.edu 37 2 225719699 225719699 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014689.2 -1 validated p.N623 1.000 180 0% 105 98.1% 0 - - - - NULL COL4A4 1286 genome.wustl.edu 37 2 227895166 227895166 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000092.4 -1 reviewed p.G1322 1.000 290 0% 212 15.1% 0 - - - - HMMPfam_Collagen COL4A4 1286 genome.wustl.edu 37 2 227919418 227919418 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000092.4 -1 reviewed p.G918R 0.995 137 0% 95 92.6% 0 - unknown(0) deleterious(0) - HMMPfam_Collagen COL4A3 1285 genome.wustl.edu 37 2 228159776 228159776 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000091.3 +1 reviewed p.T1172M 0.014 202 0% 160 95% 0 - unknown(0) tolerated(0.13) - NULL ITM2C 81618 genome.wustl.edu 37 2 231741676 231741676 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030926.4 +1 validated p.N185 1.000 87 0% 79 49.4% 500 50.2% - - - HMMPfam_BRICHOS PDE6D 5147 genome.wustl.edu 37 2 232602845 232602845 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002601.2 -1 validated p.R48H 1.000 228 0% 218 11% 27 11.1% benign(0.009) tolerated(0.2) neutral(0.050) HMMPfam_GMP_PDE_delta,superfamily_E set domains DIS3L2 129563 genome.wustl.edu 37 2 233199431 233199431 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152383.4 +1 validated p.R794C 1.000 57 0% 41 95.1% 43 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CHRND 1144 genome.wustl.edu 37 2 233393033 233393033 + Missense_Mutation SNP G G A rs147919651 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000751.1 +1 reviewed p.R102H 1.000 197 0% 124 26.6% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like GIGYF2 26058 genome.wustl.edu 37 2 233655848 233655850 + In_Frame_Del DEL AAG AAG - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 AAG AAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001103147.1 +1 reviewed p.E377in_frame_del 0.975:0.984:0.998 - - - - - - - - - NULL NGEF 25791 genome.wustl.edu 37 2 233746944 233746944 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000424488 -1 known p.W188* 1.000 125 0% 71 19.7% 19 10.5% benign(0) tolerated(0.75) neutral(0.002) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like NGEF 25791 genome.wustl.edu 37 2 233791860 233791860 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019850.2 -1 validated p.P140 1.000 63 0% 34 61.8% 6 0% - - - NULL UGT1A6 54578 genome.wustl.edu 37 2 234601804 234601804 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001072.3 +1 reviewed p.R52W 0.003 157 0% 128 93% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase DNAJB3 414061 genome.wustl.edu 37 2 234652296 234652296 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001394.3 -1 validated p.Y89 0.005 32 0% 33 24.2% 0 - - - - superfamily_DnaJ_N PER2 8864 genome.wustl.edu 37 2 239155019 239155019 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022817.2 -1 reviewed p.T1255 0.010 307 0% 200 48.5% 4 50% - - - NULL ANKMY1 51281 genome.wustl.edu 37 2 241494308 241494308 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016552.2 -1 validated p.G15D 0.245 150 0% 96 95.8% 11 90.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain KIF1A 547 genome.wustl.edu 37 2 241662008 241662008 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000431776 -1 known p.R342Q 0.154 14 0% 13 100% 57 100% - - - NULL KIF1A 547 genome.wustl.edu 37 2 241710558 241710558 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000428768 -1 known p.R223Q 0.499 174 0% 100 92% 0 - unknown(0) deleterious(0) - NULL SNED1 25992 genome.wustl.edu 37 2 242011247 242011247 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080437.1 +1 provisional p.S1257 0.777 30 0% 20 95% 5 100% - - - superfamily_Concanavalin A-like lectins/glucanases FARP2 9855 genome.wustl.edu 37 2 242402780 242402780 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014808.2 +1 validated p.A570T 0.978 181 0% 109 92.7% 4 100% probably_damaging(0.996) tolerated(0.09) deleterious(0.758) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) CNTN6 27255 genome.wustl.edu 37 3 1337344 1337344 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014461.2 +1 reviewed p.R172* 0.143 157 0% 111 42.3% 0 - - - - HMMSmart_IG,superfamily_SSF48726 SETD5 55209 genome.wustl.edu 37 3 9506239 9506239 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000399686 +1 known p.H537N 0.884 223 0% 144 41% 31 54.8% - - - NULL IL17RC 84818 genome.wustl.edu 37 3 9965688 9965688 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153461.2 +1 reviewed p.R320Q 0.448 143 0% 92 31.5% 17 23.5% possibly_damaging(0.778) tolerated(0.41) neutral(0.306) NULL TATDN2 9797 genome.wustl.edu 37 3 10320618 10320618 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014760.3 +1 validated p.T732M 0.986 96 0% 62 48.4% 43 51.1% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_TatD_DNase,superfamily_SSF51556 SLC6A11 6538 genome.wustl.edu 37 3 10967723 10967723 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014229.1 +1 provisional p.A385V 1.000 220 0% 130 27.7% 0 - possibly_damaging(0.833) deleterious(0.01) deleterious(0.723) HMMPfam_SNF RAF1 5894 genome.wustl.edu 37 3 12641191 12641191 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002880.3 -1 reviewed p.H369 0.976 216 0% 192 50% 71 43.6% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase IQSEC1 9922 genome.wustl.edu 37 3 12977059 12977059 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014869.4 -1 validated p.L500H 1.000 132 0% 78 48.7% 7 42.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL NUP210 23225 genome.wustl.edu 37 3 13383335 13383335 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024923.2 -1 reviewed p.R1047 0.155 389 0% 303 23.8% 75 14.6% - - - NULL HDAC11 79885 genome.wustl.edu 37 3 13522809 13522809 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024827.3 +1 reviewed p.P22 0.080 129 0% 89 46.1% 14 50% - - - superfamily_SSF52768 C3orf20 84077 genome.wustl.edu 37 3 14724534 14724534 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032137.4 +1 validated p.P105Q 0.000 104 0% 83 54.2% 0 - benign(0.017) tolerated(0.54) neutral(0.008) NULL TBC1D5 9779 genome.wustl.edu 37 3 17202505 17202505 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134381.1 -1 validated p.D802N 0.996 160 0.6% 130 36.9% 47 42.5% benign(0.003) tolerated(0.62) neutral(0.004) NULL NGLY1 55768 genome.wustl.edu 37 3 25778827 25778827 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018297.3 -1 reviewed p.T334I 1.000 199 0% 132 45.5% 13 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases OXSM 54995 genome.wustl.edu 37 3 25833132 25833132 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017897.2 +1 reviewed p.T207 0.977 148 0% 108 45.4% 13 38.4% - - - HMMPfam_ketoacyl-synt,superfamily_Thiolase-like,PatternScan_B_KETOACYL_SYNTHASE CNOT10 25904 genome.wustl.edu 37 3 32806208 32806208 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015442.1 +1 provisional p.S637 0.308 173 0% 129 17.8% 42 14.2% - - - superfamily_TPR-like DCLK3 85443 genome.wustl.edu 37 3 36759593 36759593 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033403.1 -1 validated p.R554H 1.000 176 0.6% 117 46.2% 0 - probably_damaging(1) tolerated(0.12) deleterious(0.760) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase SCN5A 6331 genome.wustl.edu 37 3 38627212 38627212 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099404.1 -1 reviewed p.F919 1.000 118 0% 67 43.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels MYRIP 25924 genome.wustl.edu 37 3 40231459 40231459 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015460.2 +1 validated p.Y390 0.980 100 1% 84 45.2% 2 100% - - - NULL KBTBD5 131377 genome.wustl.edu 37 3 42729654 42729654 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152393.2 +1 validated p.E391 1.000 51 0% 41 46.3% 0 - - - - HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain KIF15 56992 genome.wustl.edu 37 3 44843457 44843457 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020242.2 +1 validated p.L500 0.998 27 0% 29 37.9% 2 50% - - - NULL CDCP1 64866 genome.wustl.edu 37 3 45153677 45153677 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022842.3 -1 reviewed p.R185W 1.000 219 0.9% 142 40.1% 51 43.1% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SLC6A20 54716 genome.wustl.edu 37 3 45817361 45817361 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020208.3 -1 reviewed p.P158 0.493 99 0% 70 44.3% 10 40% - - - HMMPfam_SNF ALS2CL 259173 genome.wustl.edu 37 3 46724715 46724715 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000423707 -1 known p.P269L 0.000 31 0% 22 36.4% 15 33.3% - - - NULL PTH1R 5745 genome.wustl.edu 37 3 46939388 46939388 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000316.2 +1 reviewed p.P119 0.103 130 0% 95 45.3% 0 - - - - HMMPfam_HRM,HMMSmart_HormR,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF111418 PTH1R 5745 genome.wustl.edu 37 3 46940148 46940148 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000313063 +1 known p.R410H 0.998 22 0% 40 47.5% 0 - unknown(0) deleterious(0) - HMMPfam_7tm_2 SETD2 29072 genome.wustl.edu 37 3 47098699 47098699 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014159.6 -1 reviewed p.P2192H 1.000 275 0% 176 49.4% 56 41% probably_damaging(1) tolerated(0.05) deleterious(0.845) NULL KIF9 64147 genome.wustl.edu 37 3 47278001 47278001 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134878.1 -1 validated p.R678H 0.710 190 0% 115 52.2% 5 80% possibly_damaging(0.812) deleterious(0.03) deleterious(0.670) NULL PTPN23 25930 genome.wustl.edu 37 3 47450414 47450414 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015466.2 +1 validated p.E493D 1.000 101 0% 48 52.1% 53 66% benign(0.082) tolerated(0.39) neutral(0.022) NULL SCAP 22937 genome.wustl.edu 37 3 47456404 47456404 + Silent SNP T T G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012235.2 -1 reviewed p.T1073 0.037 68 0% 52 17.3% 82 13.4% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 MAP4 4134 genome.wustl.edu 37 3 47951307 47951307 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030884.3 -1 reviewed p.D142G 0.003 193 0% 180 43.9% 1 0% possibly_damaging(0.448) deleterious(0) deleterious(0.591) NULL PLXNB1 5364 genome.wustl.edu 37 3 48459616 48459616 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130082.1 -1 validated p.A1069V 0.990 25 0% 17 58.8% 56 51.7% benign(0.238) tolerated(0.33) neutral(0.048) HMMSmart_SM00429,superfamily_E set domains SLC26A6 65010 genome.wustl.edu 37 3 48670933 48670933 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022911.2 -1 reviewed p.T53 0.495 36 0% 29 44.8% 3 33.3% - - - NULL QARS 5859 genome.wustl.edu 37 3 49138082 49138082 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005051.1 -1 reviewed p.R301H 1.000 221 0% 169 49.7% 211 40.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_1c,superfamily_SSF52374 RNF123 63891 genome.wustl.edu 37 3 49758236 49758236 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022064.2 +1 reviewed p.A1216V 0.956 96 0% 49 46.9% 54 46.2% benign(0) tolerated(0.1) neutral(0.286) NULL CDHR4 389118 genome.wustl.edu 37 3 49832745 49832745 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007540.2 -1 provisional p.R305 0.512 87 0% 39 41% 0 - - - - HMMSmart_SM00112,superfamily_Cadherin-like CDHR4 389118 genome.wustl.edu 37 3 49832770 49832770 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007540.2 -1 provisional p.R297H 0.000 92 0% 39 48.7% 0 - possibly_damaging(0.609) tolerated(0.11) deleterious(0.483) HMMSmart_SM00112,superfamily_Cadherin-like HYAL2 8692 genome.wustl.edu 37 3 50357653 50357653 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003773.4 -1 reviewed p.D90N 0.002 103 0% 61 19.7% 116 33.6% benign(0) tolerated(0.49) neutral(0.011) HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases C3orf18 51161 genome.wustl.edu 37 3 50598482 50598482 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016210.3 -1 validated p.R92C 0.996 113 0% 77 46.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HEMK1 51409 genome.wustl.edu 37 3 50617817 50617817 + Missense_Mutation SNP G G A rs192523417 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016173.3 +1 validated p.R329Q 1.000 157 0% 87 43.7% 22 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF53335 GRM2 2912 genome.wustl.edu 37 3 51747058 51747058 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000839.3 +1 reviewed p.S340 0.984 43 0% 35 71.4% 0 - - - - HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I RPL29 6159 genome.wustl.edu 37 3 52028047 52028047 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000992.2 -1 reviewed p.S66 0.119 83 0% 55 18.2% 1822 19.2% - - - NULL DNAH1 25981 genome.wustl.edu 37 3 52422865 52422865 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015512.4 +1 validated p.T3136M 0.990 75 0% 47 42.6% 7 42.8% possibly_damaging(0.921) tolerated(0.11) deleterious(0.643) NULL STAB1 23166 genome.wustl.edu 37 3 52537022 52537022 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015136.2 +1 reviewed p.P197 0.000 29 0% 14 50% 1 0% - - - HMMSmart_SM00180,superfamily_EGF/Laminin STAB1 23166 genome.wustl.edu 37 3 52553985 52553985 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015136.2 +1 reviewed p.R1754Q 0.000 54 0% 31 32.3% 3 0% benign(0.001) tolerated(0.74) neutral(0.002) HMMPfam_Fasciclin,superfamily_FAS1 domain TMEM110 375346 genome.wustl.edu 37 3 52878929 52878929 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198563.1 -1 provisional p.V152 0.754 97 0% 51 47.1% 9 66.6% - - - NULL TMEM110 375346 genome.wustl.edu 37 3 52883867 52883867 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198563.1 -1 provisional p.R123H 0.998 80 0% 48 41.7% 7 28.5% probably_damaging(0.989) deleterious(0.01) deleterious(0.845) NULL SFMBT1 51460 genome.wustl.edu 37 3 52946623 52946623 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005158.1 -1 reviewed p.R554H 1.000 209 0% 172 32.6% 29 31% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LRTM1 57408 genome.wustl.edu 37 3 54952737 54952737 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020678.2 -1 provisional p.A263T 0.000 129 0% 86 54.7% 0 - benign(0) tolerated(0.4) neutral(0.016) NULL DNAH12 201625 genome.wustl.edu 37 3 57343248 57343248 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178504.4 -1 validated p.R2839Q 0.000 378 0% 289 47.4% 0 - benign(0.002) tolerated(0.51) neutral(0.009) HMMPfam_Dynein_heavy ACOX2 8309 genome.wustl.edu 37 3 58510225 58510225 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003500.3 -1 reviewed p.C485Y 1.000 93 0% 84 41.7% 2 50% probably_damaging(0.995) tolerated(0.53) neutral(0.465) NULL FAM107A 11170 genome.wustl.edu 37 3 58552955 58552955 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001076778.1 -1 validated p.R103W 1.000 39 0% 24 45.8% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1151 PTPRG 5793 genome.wustl.edu 37 3 62189352 62189352 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002841.3 +1 reviewed p.S628L 0.003 64 0% 62 50% 21 57.1% benign(0) deleterious(0) neutral(0.445) NULL SUCLG2 8801 genome.wustl.edu 37 3 67579530 67579530 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003848.3 -1 reviewed p.G103S 1.000 429 0% 286 14.7% 68 17.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ATP-grasp_2,superfamily_SSF56059 ARL6IP5 10550 genome.wustl.edu 37 3 69151100 69151100 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006407.3 +1 reviewed p.R96H 1.000 383 0.3% 246 47.6% 127 46.4% benign(0) tolerated(0.05) neutral(0.345) HMMPfam_PRA1 ARL6IP5 10550 genome.wustl.edu 37 3 69153775 69153775 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006407.3 +1 reviewed p.K185 1.000 92 0% 79 12.7% 126 6.3% - - - NULL ROBO1 6091 genome.wustl.edu 37 3 78663874 78663874 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002941.3 -1 reviewed p.A1453 0.032 362 0.6% 266 46.6% 30 56.6% - - - NULL ROBO1 6091 genome.wustl.edu 37 3 78680340 78680340 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000472273 -1 known p.A126V 0.993 707 0% 552 39.1% 15 60% - - - NULL ROBO1 6091 genome.wustl.edu 37 3 78706353 78706353 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002941.3 -1 reviewed p.V837M 0.998 138 0% 107 49.5% 10 80% probably_damaging(0.997) deleterious(0.02) deleterious(0.849) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III DHFRL1 200895 genome.wustl.edu 37 3 93780239 93780239 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176815.3 -1 provisional p.T39 1.000 196 0% 132 49.2% 7 57.1% - - - HMMPfam_DHFR_1,superfamily_SSF53597 DHFRL1 200895 genome.wustl.edu 37 3 93780308 93780308 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176815.3 -1 provisional p.G16 1.000 87 0% 51 15.7% 6 33.3% - - - HMMPfam_DHFR_1,superfamily_SSF53597 DCBLD2 131566 genome.wustl.edu 37 3 98541148 98541148 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080927.3 -1 validated p.G252S 1.000 177 0% 112 35.7% 22 63.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain NIT2 56954 genome.wustl.edu 37 3 100057990 100057990 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020202.4 +1 validated p.R23C 1.000 246 0% 192 42.7% 53 35.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse GPR128 84873 genome.wustl.edu 37 3 100352194 100352194 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032787.2 +1 validated p.N140 0.001 64 0% 54 37% 0 - - - - NULL ZBTB11 27107 genome.wustl.edu 37 3 101390047 101390047 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014415.3 -1 validated p.N235 1.000 121 0% 114 44.7% 7 57.1% - - - HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB ALCAM 214 genome.wustl.edu 37 3 105266355 105266355 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000465413 +1 known p.R215C 1.000 98 0% 73 42.5% 24 41.6% - - - superfamily_Immunoglobulin GOLGB1 2804 genome.wustl.edu 37 3 121386324 121386324 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004487.3 -1 validated p.R3180W 0.280 95 0% 69 50.7% 60 40% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KPNA1 3836 genome.wustl.edu 37 3 122156057 122156057 + Missense_Mutation SNP G G A rs192240632 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002264.3 -1 reviewed p.T361M 1.000 332 0% 255 40% 23 47.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat SEMA5B 54437 genome.wustl.edu 37 3 122629720 122629720 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000451541 -1 known p.R134Q 1.000 250 0.8% 176 18.8% 0 - - - - NULL ADCY5 111 genome.wustl.edu 37 3 123008730 123008730 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_183357.1 -1 validated p.S1133 0.001 160 0% 103 39.8% 32 56.2% - - - HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase ADCY5 111 genome.wustl.edu 37 3 123010146 123010146 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_183357.1 -1 validated p.D1047 0.990 40 0% 39 41% 24 50% - - - HMMSmart_CYCc KALRN 8997 genome.wustl.edu 37 3 124044882 124044882 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001024660.3 +1 reviewed p.A381V 1.000 97 0% 69 47.8% 5 60% benign(0.408) deleterious(0.04) deleterious(0.481) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat KALRN 8997 genome.wustl.edu 37 3 124418771 124418771 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000354186 +1 known p.S2598L 0.702 189 0% 126 51.6% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ITGB5 3693 genome.wustl.edu 37 3 124483290 124483290 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002213.3 -1 provisional p.R751Q 1.000 102 0% 91 53.8% 93 41.9% probably_damaging(0.958) deleterious(0) deleterious(0.846) HMMPfam_Integrin_b_cyt ALDH1L1 10840 genome.wustl.edu 37 3 125836930 125836930 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012190.2 -1 reviewed p.G634S 0.998 83 0% 57 42.1% 8 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH ZXDC 79364 genome.wustl.edu 37 3 126160635 126160635 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025112.4 -1 validated p.A789 0.004 51 0% 40 42.5% 24 62.5% - - - NULL PLXNA1 5361 genome.wustl.edu 37 3 126708141 126708141 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032242.3 +1 validated p.T212 0.465 49 0% 30 40% 9 33.3% - - - HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain ABTB1 80325 genome.wustl.edu 37 3 127398982 127398982 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_172027.2 +1 reviewed p.R395Q 1.000 61 0% 56 44.6% 37 51.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL EEFSEC 60678 genome.wustl.edu 37 3 128060258 128060258 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021937.3 +1 validated p.P323 0.001 130 0.8% 96 43.8% 23 47.8% - - - NULL KIAA1257 57501 genome.wustl.edu 37 3 128707683 128707683 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020741.2 -1 predicted p.R114H 0.002 339 0% 292 46.6% 0 - benign(0.161) deleterious(0) neutral(0.459) NULL RAB43 339122 genome.wustl.edu 37 3 128813996 128813996 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198490.1 -1 validated p.T74M 1.000 165 0% 84 57.1% 16 43.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases COL6A6 131873 genome.wustl.edu 37 3 130368380 130368380 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102608.1 +1 provisional p.V1903M 0.096 55 0% 36 47.2% 0 - benign(0.225) - - HMMSmart_SM00327,superfamily_vWA-like ASTE1 28990 genome.wustl.edu 37 3 130743388 130743388 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014065.2 -1 validated p.R255* 1.000 135 0% 95 43.2% 3 0% - - - NULL DNAJC13 23317 genome.wustl.edu 37 3 132176197 132176197 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015268.3 +1 validated p.L478 0.883 319 0% 281 44.1% 8 25% - - - superfamily_ARM repeat DNAJC13 23317 genome.wustl.edu 37 3 132219706 132219706 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015268.3 +1 validated p.T1495 0.938 393 0% 277 49.5% 15 33.3% - - - superfamily_ARM repeat BFSP2 8419 genome.wustl.edu 37 3 133119141 133119141 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003571.2 +1 reviewed p.R72C 1.000 37 0% 24 29.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RAB6B 51560 genome.wustl.edu 37 3 133614253 133614253 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016577.3 -1 validated p.G20R 1.000 120 0% 78 37.2% 7 71.4% unknown(0) deleterious(0) - HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases AMOTL2 51421 genome.wustl.edu 37 3 134089922 134089922 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016201.2 -1 reviewed p.A118 0.001 72 0% 65 49.2% 30 56.6% - - - NULL PCCB 5096 genome.wustl.edu 37 3 136047681 136047681 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000532.4 +1 reviewed p.F494L 1.000 209 0% 124 50% 105 42.8% benign(0.003) tolerated(0.1) neutral(0.286) HMMPfam_Carboxyl_trans,superfamily_SSF52096 PIK3CB 5291 genome.wustl.edu 37 3 138409876 138409876 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006219.1 -1 provisional p.R668W 1.000 170 0% 127 44.1% 10 70% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold PIK3CB 5291 genome.wustl.edu 37 3 138453640 138453640 + Missense_Mutation SNP G G A rs148366420 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006219.1 -1 provisional p.R270W 1.000 209 0% 163 50.3% 5 80% probably_damaging(0.99) tolerated(0.1) deleterious(0.728) HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,superfamily_SSF54236 SPSB4 92369 genome.wustl.edu 37 3 140785550 140785550 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080862.1 +1 provisional p.R202* 1.000 41 0% 33 33.3% 0 - - - - HMMPfam_SPRY,HMMSmart_SPRY ANKUB1 389161 genome.wustl.edu 37 3 149498216 149498216 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144960.1 -1 predicted p.V87 1.000 367 0% 252 42.9% 0 - - - - NULL ARHGEF26 26084 genome.wustl.edu 37 3 153905524 153905524 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015595.3 +1 validated p.D513V 0.998 225 0% 152 19.1% 2 0% probably_damaging(0.977) deleterious(0.02) deleterious(0.802) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) OTOL1 131149 genome.wustl.edu 37 3 161220969 161220969 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080440.1 +1 provisional p.A225T 0.991 45 0% 23 43.5% 0 - unknown(0) tolerated(0.31) - HMMPfam_Collagen LRRIQ4 344657 genome.wustl.edu 37 3 169540596 169540596 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080460.1 +1 provisional p.R296Q 0.046 30 0% 18 44.4% 0 - probably_damaging(0.995) tolerated(0.1) deleterious(0.744) superfamily_SSF52058 SLC7A14 57709 genome.wustl.edu 37 3 170216490 170216490 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020949.2 -1 validated p.A242V 0.995 94 0% 81 49.4% 0 - benign(0) deleterious(0.05) neutral(0.345) HMMPfam_AA_permease PLD1 5337 genome.wustl.edu 37 3 171394540 171394540 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000342215 -1 known p.W584* 1.000 107 0% 54 37% 1 0% - - - NULL MCF2L2 23101 genome.wustl.edu 37 3 182933832 182933832 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015078.2 -1 validated p.Q807 0.720 538 0% 436 48.6% 0 - - - - HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) CLCN2 1181 genome.wustl.edu 37 3 184072081 184072081 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004366.4 -1 reviewed p.A510V 1.000 20 0% 25 48% 14 28.5% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel BCL6 604 genome.wustl.edu 37 3 187449605 187449605 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130845.1 -1 reviewed p.T92I 1.000 113 0% 87 46% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB OSTN 344901 genome.wustl.edu 37 3 190967889 190967889 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198184.1 +1 provisional p.R127 0.418 217 0% 193 48.2% 0 - - - - NULL ATP13A3 79572 genome.wustl.edu 37 3 194169270 194169270 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024524.3 -1 validated p.R356* 1.000 270 0% 207 46.9% 7 0% - - - HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M MUC4 4585 genome.wustl.edu 37 3 195492174 195492174 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018406.5 -1 reviewed p.R4461* 0.048 41 0% 14 42.9% 6 33.3% - - - HMMPfam_AMOP,HMMSmart_SM00723 MUC4 4585 genome.wustl.edu 37 3 195505984 195505984 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018406.5 -1 reviewed p.G4028D 0.044 594 0% 416 42.3% 18 38.8% probably_damaging(0.994) - - NULL MUC4 4585 genome.wustl.edu 37 3 195511212 195511212 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018406.5 -1 reviewed p.H2413 0.039 892 0% 577 23.7% 17 17.6% - - - NULL KIAA0226 9711 genome.wustl.edu 37 3 197431522 197431522 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000413360 -1 known p.T97A 0.851 71 0% 50 48% 3 66.6% - - - NULL ZNF732 654254 genome.wustl.edu 37 4 265323 265323 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001137608.1 -1 provisional p.T441 0.999 184 0% 142 44.4% 0 - - - - superfamily_SSF57667 GAK 2580 genome.wustl.edu 37 4 905555 905555 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005255.2 -1 validated p.P96 0.997 169 0% 123 44.7% 25 24% - - - superfamily_Kinase_like,HMMPfam_Pkinase SLC26A1 10861 genome.wustl.edu 37 4 985320 985320 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022042.2 -1 reviewed p.R58C 0.000 16 0.000 9 0.667 3 33.3% probably_damaging(0.988) deleterious(0.04) deleterious(0.786) NULL CRIPAK 285464 genome.wustl.edu 37 4 1388892 1388892 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_175918.3 +1 validated p.S198L 0.001 239 0% 99 48.5% 46 63% benign(0.002) - - NULL TACC3 10460 genome.wustl.edu 37 4 1730384 1730384 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006342.1 +1 reviewed p.G419R 0.003 59 0% 52 44.2% 59 50.8% benign(0.003) deleterious(0) neutral(0.445) NULL FGFR3 2261 genome.wustl.edu 37 4 1807389 1807389 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000142.4 +1 reviewed p.T546 0.949 82 0% 47 53.2% 102 50.9% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) RNF4 6047 genome.wustl.edu 37 4 2515463 2515463 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002938.3 +1 reviewed p.R164C 1.000 269 0% 215 47% 91 56% probably_damaging(0.957) tolerated(0.12) deleterious(0.661) HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box RGS12 6002 genome.wustl.edu 37 4 3415869 3415869 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198229.2 +1 reviewed p.S697 0.982 34 0% 19 52.6% 17 47% - - - superfamily_Regulator of G-protein signaling RGS RGS12 6002 genome.wustl.edu 37 4 3432230 3432230 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198229.2 +1 reviewed p.R1221H 0.986 76 0% 50 56% 23 34.7% benign(0.373) deleterious(0.01) deleterious(0.524) NULL ADRA2C 152 genome.wustl.edu 37 4 3768657 3768657 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000683.3 +1 reviewed p.S108 0.961 70 0% 55 67.3% 2 100% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PPP2R2C 5522 genome.wustl.edu 37 4 6349700 6349700 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020416.3 -1 reviewed p.L221 0.994 318 0% 188 46.8% 1 0% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like KIAA0232 9778 genome.wustl.edu 37 4 6863532 6863532 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001100590.1 +1 validated p.A475T 1.000 51 0% 36 27.8% 4 25% possibly_damaging(0.78) deleterious(0.01) deleterious(0.697) NULL KIAA0232 9778 genome.wustl.edu 37 4 6865423 6865423 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001100590.1 +1 validated p.R1105Q 1.000 235 0% 169 24.9% 19 36.8% possibly_damaging(0.928) deleterious(0) deleterious(0.820) NULL MIR95 407052 genome.wustl.edu 37 4 8007059 8007059 + RNA SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000385072 -1 known NULL 0.998 76 0% 53 24.5% 0 - - - - - ACOX3 8310 genome.wustl.edu 37 4 8383332 8383332 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003501.2 -1 validated p.A514T 0.868 266 0% 180 37.2% 19 36.8% benign(0.051) tolerated(0.14) neutral(0.253) HMMPfam_ACOX,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like WDR1 9948 genome.wustl.edu 37 4 10084714 10084714 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017491.3 -1 reviewed p.S376 0.004 49 0% 32 62.5% 355 52.3% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like FAM184B 27146 genome.wustl.edu 37 4 17710767 17710767 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015688.1 -1 validated p.Y214 0.007 46 0% 33 51.5% 0 - - - - NULL SLIT2 9353 genome.wustl.edu 37 4 20512755 20512755 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004787.1 +1 provisional p.N351 1.000 123 0% 106 49.1% 12 41.6% - - - HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like SLC34A2 10568 genome.wustl.edu 37 4 25678114 25678114 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006424.2 +1 reviewed p.V606I 0.000 51 0% 37 45.9% 111 45% benign(0.001) tolerated(0.37) neutral(0.019) NULL TBC1D1 23216 genome.wustl.edu 37 4 37904015 37904015 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015173.2 +1 validated p.R100H 0.163 159 0% 114 12.3% 3 0% benign(0) tolerated(0.94) - HMMSmart_SM00462,superfamily_PH domain-like LIAS 11019 genome.wustl.edu 37 4 39474814 39474814 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006859.2 +1 reviewed p.R350H 1.000 339 0% 239 37.2% 14 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF102114 GABRA4 2557 genome.wustl.edu 37 4 46995438 46995438 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000809.2 -1 reviewed p.V2I 1.000 58 0% 39 38.5% 0 - benign(0.235) - - NULL FRYL 285527 genome.wustl.edu 37 4 48567554 48567554 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015030.1 -1 validated p.A1108 0.832 146 0% 107 35.5% 7 71.4% - - - NULL LRRC66 339977 genome.wustl.edu 37 4 52861617 52861617 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001024611.1 -1 provisional p.A524V 0.000 79 0% 52 42.3% 0 - benign(0) tolerated(0.31) neutral(0.027) NULL POLR2B 5431 genome.wustl.edu 37 4 57860570 57860570 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000938.1 +1 reviewed p.P82S 1.000 161 0% 94 40.4% 45 60% benign(0) tolerated(0.75) neutral(0.002) HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase LOC644578 644578 genome.wustl.edu 37 4 64215684 64215684 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_927694.2 +1 model p.K111 0.365 6 0.000 16 0.625 0 - - - - NULL UGT2B11 10720 genome.wustl.edu 37 4 70078386 70078386 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001073.1 -1 provisional p.R259* 0.998 525 0% 432 41.2% 0 - - - - HMMPfam_UDPGT,superfamily_SSF53756 PPEF2 5470 genome.wustl.edu 37 4 76811167 76811167 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006239.2 -1 reviewed p.S120 1.000 478 0% 333 14.4% 0 - - - - HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases C4orf22 255119 genome.wustl.edu 37 4 81791203 81791203 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152770.1 +1 predicted p.I130 0.818 232 0% 157 47.8% 0 - - - - NULL COPS4 51138 genome.wustl.edu 37 4 83989593 83989593 + Silent SNP G G A rs189326692 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016129.2 +1 reviewed p.A335 0.997 226 0.4% 173 49.1% 46 45.6% - - - "HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain" WDFY3 23001 genome.wustl.edu 37 4 85660238 85660238 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014991.4 -1 reviewed p.R2167C 1.000 334 0% 271 47.6% 20 65% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM190A 401145 genome.wustl.edu 37 4 91229626 91229626 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145065.1 +1 validated p.R64H 1.000 225 0% 203 43.3% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DDIT4L 115265 genome.wustl.edu 37 4 101109122 101109122 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145244.2 -1 provisional p.T98 0.000 258 0.4% 213 43.7% 5 80% - - - HMMPfam_RTP801_C EMCN 51705 genome.wustl.edu 37 4 101344481 101344481 + Missense_Mutation SNP A A C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016242.3 -1 validated p.S166A 0.002 374 0.3% 227 44.1% 0 - benign(0.256) deleterious(0.04) neutral(0.376) HMMPfam_Endomucin BANK1 55024 genome.wustl.edu 37 4 102994867 102994867 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017935.4 +1 reviewed p.K775N 1.000 211 0% 192 45.8% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NFKB1 4790 genome.wustl.edu 37 4 103533626 103533626 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003998.3 +1 reviewed p.Q819* 1.000 153 0.7% 119 37% 22 13.6% - - - HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like DKK2 27123 genome.wustl.edu 37 4 107956620 107956620 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014421.2 -1 reviewed p.G43 1.000 51 0% 46 50% 0 - - - - NULL ALPK1 80216 genome.wustl.edu 37 4 113303616 113303616 + Missense_Mutation SNP G G A rs188866014 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102406.1 +1 validated p.V62M 1.000 156 0% 106 47.2% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL C4orf21 55345 genome.wustl.edu 37 4 113539232 113539232 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000505019 -1 known p.G656R 0.000 237 0% 144 44.4% 2 50% benign(0.404) deleterious(0.04) deleterious(0.479) NULL ANK2 287 genome.wustl.edu 37 4 114161659 114161659 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001148.4 +1 reviewed p.H238Y 1.000 321 0% 246 43.9% 0 - possibly_damaging(0.928) deleterious(0) deleterious(0.820) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK BBS7 55212 genome.wustl.edu 37 4 122775894 122775894 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176824.1 -1 reviewed p.R228H 0.141 223 0% 188 48.4% 13 15.3% benign(0) tolerated(0.36) neutral(0.020) NULL INTU 27152 genome.wustl.edu 37 4 128609010 128609010 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015693.3 +1 validated p.P479 0.733 146 0% 113 46.9% 1 100% - - - NULL USP38 84640 genome.wustl.edu 37 4 144133490 144133490 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032557.5 +1 validated p.R506Q 1.000 181 0% 132 12.9% 20 0% benign(0.141) tolerated(0.4) neutral(0.028) HMMPfam_UCH,superfamily_Cysteine proteinases GYPE 2996 genome.wustl.edu 37 4 144797984 144797984 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002102.3 -1 reviewed p.A54V 0.051 458 0% 408 49.3% 0 - benign(0) deleterious(0.02) neutral(0.383) NULL SLC10A7 84068 genome.wustl.edu 37 4 147431081 147431081 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001029998.3 -1 validated p.E102K 1.000 176 0% 124 10.5% 3 33.3% benign(0.007) tolerated(0.41) neutral(0.015) HMMPfam_SBF DCLK2 166614 genome.wustl.edu 37 4 151023640 151023640 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040260.2 +1 validated p.Y144 0.942 49 0% 59 37.3% 0 - - - - HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC) DCLK2 166614 genome.wustl.edu 37 4 151153924 151153924 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040260.2 +1 validated p.R504G 1.000 248 0% 189 41.3% 0 - benign(0.187) tolerated(0.14) neutral(0.267) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TRIM2 23321 genome.wustl.edu 37 4 154197067 154197067 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015271.3 +1 validated p.A80P 0.987 231 0% 124 40.3% 58 41.3% benign(0) tolerated(0.37) neutral(0.019) HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box GUCY1A3 2982 genome.wustl.edu 37 4 156643334 156643334 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000856.4 +1 validated p.T621S 1.000 167 0% 138 50.7% 7 14.2% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase GRIA2 2891 genome.wustl.edu 37 4 158284077 158284077 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000826.3 +1 reviewed p.R845* 1.000 468 0.2% 359 24.2% 2 50% - - - NULL FSTL5 56884 genome.wustl.edu 37 4 162697155 162697155 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020116.3 -1 validated p.I161V 0.192 207 0% 162 55.6% 0 - benign(0) tolerated(1) - NULL ANP32C 23520 genome.wustl.edu 37 4 165118483 165118483 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012403.1 -1 reviewed p.Y127 0.998 484 0% 366 41.5% 0 - - - - superfamily_L domain-like TRIM75 391714 genome.wustl.edu 37 4 165981141 165981141 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000322402 +1 known p.Q281R 0.542 45 0% 36 38.9% 0 - - - - NULL ADAM29 11086 genome.wustl.edu 37 4 175897871 175897871 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130703.1 +1 reviewed p.R399C 0.468 436 0% 402 43% 0 - probably_damaging(1) tolerated(0.17) deleterious(0.559) NULL NEIL3 55247 genome.wustl.edu 37 4 178281730 178281730 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018248.2 +1 validated p.R512C 0.998 159 0% 104 48.1% 6 66.6% benign(0.006) deleterious(0.01) neutral(0.406) HMMPfam_zf-GRF ODZ3 55714 genome.wustl.edu 37 4 183696257 183696257 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080477.1 +1 provisional p.R1752Q 1.000 102 0% 64 42.2% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_ConA_like_lec_gl CYP4V2 285440 genome.wustl.edu 37 4 187115693 187115693 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207352.3 +1 reviewed p.R85H 0.046 230 0% 196 31.6% 8 25% probably_damaging(0.965) tolerated(0.05) deleterious(0.752) HMMPfam_p450,superfamily_Cytochrome P450 FAT1 2195 genome.wustl.edu 37 4 187510104 187510104 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005245.3 -1 reviewed p.A4470V 0.800 250 0% 190 46.8% 2 0% benign(0.002) tolerated(0.27) neutral(0.034) NULL ZFP42 132625 genome.wustl.edu 37 4 188924187 188924187 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_174900.3 +1 validated p.V76I 0.245 182 0% 118 38.1% 0 - benign(0) tolerated(1) - NULL PLEKHG4B 153478 genome.wustl.edu 37 5 171406 171406 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052909.3 +1 validated p.Y943 0.998 30 0% 21 47.6% 8 37.5% - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) LPCAT1 79888 genome.wustl.edu 37 5 1463838 1463838 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024830.3 -1 validated p.N511 0.989 183 0% 133 43.6% 30 56.6% - - - NULL KIAA0947 23379 genome.wustl.edu 37 5 5463978 5463978 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015325.1 +1 validated p.R1511* 0.914 60 0% 40 37.5% 11 45.4% - - - NULL DNAH5 1767 genome.wustl.edu 37 5 13766245 13766245 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001369.2 -1 reviewed p.R3314H 0.995 127 0% 85 56.5% 0 - benign(0.045) deleterious(0.01) neutral(0.408) NULL DNAH5 1767 genome.wustl.edu 37 5 13844999 13844999 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001369.2 -1 reviewed p.A1740T 1.000 212 0% 145 46.2% 0 - possibly_damaging(0.804) tolerated(0.13) deleterious(0.555) HMMPfam_DHC_N2 FBXL7 23194 genome.wustl.edu 37 5 15937245 15937245 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012304.3 +1 reviewed p.R476C 1.000 12 0% 22 36.4% 8 62.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00367,superfamily_RNI-like MARCH11 441061 genome.wustl.edu 37 5 16091144 16091144 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102562.1 -1 provisional p.A247D 1.000 146 0% 115 43.5% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL NPR3 4883 genome.wustl.edu 37 5 32774841 32774841 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000908.2 +1 validated p.D363N 1.000 294 0% 217 44.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I RXFP3 51289 genome.wustl.edu 37 5 33937183 33937183 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016568.3 +1 validated p.R113H 1.000 146 0% 104 45.2% 0 - possibly_damaging(0.789) tolerated(0.05) deleterious(0.641) HMMPfam_7tm_1,superfamily_SSF81321 SLC45A2 51151 genome.wustl.edu 37 5 33951725 33951725 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016180.3 -1 reviewed p.E364K 0.984 149 0% 102 40.2% 0 - benign(0.115) deleterious(0.02) neutral(0.392) superfamily_MFS general substrate transporter DNAJC21 134218 genome.wustl.edu 37 5 34954762 34954762 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_194283.3 +1 validated p.S558 0.051 231 0% 180 43.3% 50 52% - - - NULL SLC1A3 6507 genome.wustl.edu 37 5 36608665 36608665 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004172.4 +1 reviewed p.R47Q 1.000 144 0% 110 43.6% 4 0% possibly_damaging(0.948) tolerated(0.18) neutral(0.447) NULL NIPBL 25836 genome.wustl.edu 37 5 37020924 37020924 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_133433.3 +1 reviewed p.R1758Q 1.000 291 0% 162 45.1% 27 33.3% probably_damaging(0.983) tolerated(0.33) neutral(0.453) superfamily_ARM repeat WDR70 55100 genome.wustl.edu 37 5 37516692 37516692 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018034.2 +1 provisional p.A306V 1.000 301 0.3% 198 46% 34 29.4% benign(0.056) deleterious(0) neutral(0.448) HMMSmart_WD40,superfamily_WD40_like OSMR 9180 genome.wustl.edu 37 5 38933467 38933467 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003999.2 +1 reviewed p.R954H 0.000 143 0% 88 33% 2 100% benign(0.005) tolerated(0.15) neutral(0.241) NULL CARD6 84674 genome.wustl.edu 37 5 40853918 40853918 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032587.3 +1 reviewed p.A828 0.004 107 0% 66 12.1% 1 0% - - - NULL C6 729 genome.wustl.edu 37 5 41176678 41176678 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000065.2 -1 reviewed p.R356Q 0.746 240 0% 206 50.5% 0 - probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN HCN1 348980 genome.wustl.edu 37 5 45262234 45262234 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021072.2 -1 validated p.A821V 0.003 74 0% 61 50.8% 0 - benign(0.076) tolerated(0.1) neutral(0.292) NULL ITGA1 3672 genome.wustl.edu 37 5 52227884 52227884 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181501.1 +1 reviewed p.E927K 0.998 385 0% 262 43.9% 7 0% probably_damaging(1) tolerated(0.45) deleterious(0.512) HMMPfam_Integrin_alpha2,superfamily_SSF69179 DDX4 54514 genome.wustl.edu 37 5 55094338 55094338 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024415.2 +1 validated p.T518 0.000 428 0% 312 51.6% 0 - - - - HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases MAP3K1 4214 genome.wustl.edu 37 5 56161222 56161222 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005921.1 +1 validated p.R364Q 1.000 188 0% 141 48.2% 9 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SWIM LRRC70 100130733 genome.wustl.edu 37 5 61875709 61875709 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181506.4 +1 validated p.P148 0.977 114 0% 79 34.2% 0 - - - - HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058 MAST4 375449 genome.wustl.edu 37 5 66427716 66427716 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015183.2 +1 validated p.T488M 1.000 271 0.7% 235 17.4% 2 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CD180 4064 genome.wustl.edu 37 5 66479395 66479395 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005582.2 -1 validated p.D426N 1.000 409 0% 340 43.8% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_L domain-like BDP1 55814 genome.wustl.edu 37 5 70785301 70785301 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018429.2 +1 reviewed p.T428 0.052 107 0% 102 16.7% 2 0% - - - NULL MCCC2 64087 genome.wustl.edu 37 5 70888803 70888803 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022132.4 +1 reviewed p.V60 0.769 155 0% 122 42.6% 44 38.6% - - - superfamily_ClpP/crotonase TMEM171 134285 genome.wustl.edu 37 5 72419402 72419402 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173490.6 +1 validated p.V68M 0.379 165 0% 124 40.3% 0 - possibly_damaging(0.945) deleterious(0.02) deleterious(0.772) NULL TMEM174 134288 genome.wustl.edu 37 5 72469592 72469592 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153217.2 +1 validated p.A174 0.000 205 0% 152 52% 0 - - - - NULL JMY 133746 genome.wustl.edu 37 5 78573810 78573810 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152405.4 +1 validated p.S370 1.000 120 0% 103 52.4% 5 60% - - - NULL CMYA5 202333 genome.wustl.edu 37 5 79027526 79027526 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153610.3 +1 validated p.S980T 0.938 187 0% 140 45% 0 - benign(0.34) deleterious(0.03) deleterious(0.472) NULL MTX3 345778 genome.wustl.edu 37 5 79279513 79279513 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001010891.4 -1 validated p.S311 0.989 231 0% 219 50.2% 4 75% - - - NULL ATP6AP1L 92270 genome.wustl.edu 37 5 81608538 81608538 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001017971.1 +1 provisional p.G80 0.840 245 0% 176 53.4% 8 12.5% - - - HMMPfam_ATP-synt_S1 VCAN 1462 genome.wustl.edu 37 5 82849252 82849252 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004385.4 +1 reviewed p.R3188H 0.999 137 0% 89 53.9% 9 0% probably_damaging(0.989) deleterious(0.02) deleterious(0.823) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like TMEM161B 153396 genome.wustl.edu 37 5 87494906 87494906 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153354.3 -1 provisional p.R326W 0.995 135 0% 136 44.9% 13 61.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Tmemb_161AB ELL2 22936 genome.wustl.edu 37 5 95234053 95234053 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012081.5 -1 validated p.K472N 1.000 353 0% 282 46.8% 2 0% unknown(0) tolerated(0.1) - NULL ERAP2 64167 genome.wustl.edu 37 5 96237302 96237302 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130140.1 +1 validated p.D555 0.428 96 0% 80 36.2% 2 50% - - - NULL GIN1 54826 genome.wustl.edu 37 5 102440408 102440408 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017676.2 -1 validated p.V159A 0.001 229 0% 168 57.7% 3 66.6% benign(0.004) tolerated(0.2) neutral(0.049) HMMPfam_rve,superfamily_Ribonuclease H-like ZRSR1 7310 genome.wustl.edu 37 5 112228580 112228580 + Missense_Mutation SNP G G A rs142725524 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000391338 +1 known p.R415H 0.000 107 0.9% 93 15.1% 0 - unknown(0) tolerated(0.28) - NULL MCC 4163 genome.wustl.edu 37 5 112364680 112364680 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001085377.1 -1 reviewed p.R944* 1.000 251 0% 178 47.8% 0 - - - - HMMPfam_MCC-bdg_PDZ KCNN2 3781 genome.wustl.edu 37 5 113740190 113740190 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021614.2 +1 reviewed p.R213H 1.000 405 0% 270 47% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SK_channel COMMD10 51397 genome.wustl.edu 37 5 115469838 115469838 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016144.2 +1 provisional p.A158V 1.000 259 0% 198 40.4% 21 47.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HCaRG DMXL1 1657 genome.wustl.edu 37 5 118484784 118484784 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005509.4 +1 validated p.G1088C 1.000 218 0% 168 45.8% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SNCAIP 9627 genome.wustl.edu 37 5 121787079 121787079 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005460.2 +1 reviewed p.R846Q 0.264 133 0% 98 18.4% 0 - benign(0.167) deleterious(0.01) neutral(0.421) NULL PRDM6 93166 genome.wustl.edu 37 5 122435547 122435547 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136239.1 +1 validated p.A264V 1.000 17 0% 15 60% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain FBN2 2201 genome.wustl.edu 37 5 127710443 127710443 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001999.3 -1 reviewed p.D658G 1.000 113 0% 82 36.6% 7 42.8% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin SHROOM1 134549 genome.wustl.edu 37 5 132158543 132158543 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_133456.2 -1 validated p.R830Q 0.011 68 0% 50 52% 6 16.6% probably_damaging(0.963) tolerated(0.42) neutral(0.420) NULL SHROOM1 134549 genome.wustl.edu 37 5 132161190 132161190 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_133456.2 -1 validated p.A215T 0.001 11 0.000 9 0.444 0 - benign(0.03) tolerated(0.92) neutral(0.002) HMMPfam_ASD1 FSTL4 23105 genome.wustl.edu 37 5 132556644 132556644 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000360575 -1 known p.P67 0.000 40 0% 36 50% 0 - - - - NULL PHF15 23338 genome.wustl.edu 37 5 133902204 133902204 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015288.4 +1 provisional p.Q456 1.000 29 0% 35 54.3% 7 42.8% - - - NULL DDX46 9879 genome.wustl.edu 37 5 134099757 134099757 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014829.2 +1 reviewed p.R61W 1.000 228 0% 127 44.1% 31 45.1% unknown(0) deleterious(0) - NULL SMAD5 4090 genome.wustl.edu 37 5 135510305 135510305 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000398807 +1 known p.R413Q 1.000 105 0% 96 54.2% 21 57.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain KIF20A 10112 genome.wustl.edu 37 5 137518143 137518143 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005733.2 +1 validated p.T169 0.197 123 0% 119 42.9% 22 31.8% - - - HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 KIF20A 10112 genome.wustl.edu 37 5 137520620 137520620 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005733.2 +1 validated p.R603Q 0.996 194 0% 149 45.6% 17 52.9% benign(0.155) tolerated(0.31) neutral(0.041) NULL EGR1 1958 genome.wustl.edu 37 5 137802977 137802977 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001964.2 +1 reviewed p.R280H 0.998 67 0% 44 68.2% 359 46.5% unknown(0) deleterious(0) - NULL SIL1 64374 genome.wustl.edu 37 5 138286904 138286904 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001037633.1 -1 reviewed p.A329T 0.974 35 0% 27 59.3% 61 37.7% benign(0.012) tolerated(0.24) neutral(0.038) superfamily_ARM-type_fold ANKHD1-EIF4EBP3 404734 genome.wustl.edu 37 5 139917040 139917040 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020690.4 +1 reviewed p.P2365H 1.000 185 0% 129 45.7% 47 42.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL APBB3 10307 genome.wustl.edu 37 5 139938231 139938231 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006051.3 -1 reviewed p.R474Q 1.000 82 0% 63 49.2% 20 55% probably_damaging(0.994) tolerated(0.16) deleterious(0.512) NULL HARS2 23438 genome.wustl.edu 37 5 140075141 140075141 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012208.2 +1 reviewed p.R150C 1.000 512 0% 356 41.9% 52 51.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_2b,superfamily_SSF55681 PCDHA3 56145 genome.wustl.edu 37 5 140182231 140182231 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018906.2 +1 reviewed p.D483 0.824 95 0% 89 37.1% 1 100% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA7 56141 genome.wustl.edu 37 5 140214152 140214152 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018910.2 +1 reviewed p.R62C 0.996 107 0% 59 44.1% 1 100% possibly_damaging(0.858) deleterious(0) deleterious(0.776) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHA7 56141 genome.wustl.edu 37 5 140215534 140215534 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018910.2 +1 reviewed p.P522 0.132 46 0% 53 54.7% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHA7 56141 genome.wustl.edu 37 5 140216132 140216132 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018910.2 +1 reviewed p.R722W 0.984 128 0% 86 54.7% 1 100% benign(0.258) deleterious(0.01) neutral(0.433) NULL PCDHA12 56137 genome.wustl.edu 37 5 140256669 140256669 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018903.2 +1 reviewed p.R538C 1.000 91 0% 56 10.7% 18 0% benign(0.326) deleterious(0) deleterious(0.546) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHAC2 56134 genome.wustl.edu 37 5 140347930 140347930 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018899.5 +1 reviewed p.A527T 0.998 111 0% 76 51.3% 0 - benign(0.016) tolerated(0.06) neutral(0.323) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB8 56128 genome.wustl.edu 37 5 140559181 140559181 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019120.2 +1 reviewed p.Y522 0.990 136 0% 82 36.6% 1 0% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB16 57717 genome.wustl.edu 37 5 140562944 140562944 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020957.1 +1 reviewed p.D270 0.586 48 0% 60 43.3% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB13 56123 genome.wustl.edu 37 5 140595042 140595042 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018933.2 +1 reviewed p.P449 0.011 152 0% 125 45.6% 2 50% - - - HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin ENSG00000251462 0 genome.wustl.edu 37 5 140621591 140621591 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000503443 -1 known NULL 0.001 52 0% 51 39.2% 0 - - - - - PCDHGA1 56114 genome.wustl.edu 37 5 140711803 140711803 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018912.2 +1 reviewed p.R518* 0.216 163 0% 122 47.5% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA3 56112 genome.wustl.edu 37 5 140725311 140725311 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018916.3 +1 reviewed p.G571S 0.734 101 0% 64 42.2% 0 - benign(0.394) deleterious(0.03) deleterious(0.491) superfamily_Cadherin-like PCDHGA5 56110 genome.wustl.edu 37 5 140746178 140746178 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018918.2 +1 reviewed p.A761T 0.788 212 0% 118 48.3% 0 - benign(0.001) tolerated(1) - NULL PCDHGB3 56102 genome.wustl.edu 37 5 140750157 140750157 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018924.2 +1 reviewed p.L66M 0.724 69 0% 52 50% 0 - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGA9 56107 genome.wustl.edu 37 5 140782704 140782704 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018921.2 +1 reviewed p.R62H 0.277 78 0% 54 46.3% 0 - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGA9 56107 genome.wustl.edu 37 5 140783170 140783170 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018921.2 +1 reviewed p.G217 0.230 33 0% 29 34.5% 2 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA10 56106 genome.wustl.edu 37 5 140794841 140794841 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018913.2 +1 reviewed p.A700V 0.993 129 0% 81 44.4% 44 38.6% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL PCDHGA12 26025 genome.wustl.edu 37 5 140811838 140811838 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003735.2 +1 reviewed p.Y504 0.095 122 0% 104 48.1% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like ARAP3 64411 genome.wustl.edu 37 5 141035632 141035632 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022481.5 -1 reviewed p.L1303I 1.000 449 0% 357 26.3% 32 21.8% probably_damaging(0.996) tolerated(0.07) deleterious(0.780) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 DPYSL3 1809 genome.wustl.edu 37 5 146775201 146775201 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001387.2 -1 validated p.P515 0.163 61 0% 52 46.2% 1 0% - - - NULL ARHGEF37 389337 genome.wustl.edu 37 5 149001407 149001407 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001669.2 +1 validated p.R373W 0.112 129 0% 86 46.5% 8 25% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_BAR PPARGC1B 133522 genome.wustl.edu 37 5 149216160 149216160 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000434684 +1 known p.V401I 0.042 43 2.3% 39 46.2% 2 50% - - - NULL CSF1R 1436 genome.wustl.edu 37 5 149459633 149459633 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005211.3 -1 reviewed p.R192W 0.005 110 0% 84 45.2% 2 0% benign(0.002) tolerated(0.06) neutral(0.323) HMMSmart_IG,superfamily_SSF48726 SYNPO 11346 genome.wustl.edu 37 5 150029216 150029216 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007286.5 +1 validated p.R460H 0.999 21 0% 26 53.8% 9 22.2% possibly_damaging(0.945) deleterious(0.03) deleterious(0.754) NULL DCTN4 51164 genome.wustl.edu 37 5 150090796 150090796 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135643.1 -1 validated p.R440H 1.000 209 0% 140 45.7% 39 30.7% probably_damaging(0.995) tolerated(0.14) deleterious(0.707) HMMPfam_Dynactin_p62 ANXA6 309 genome.wustl.edu 37 5 150484810 150484810 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001155.3 -1 reviewed p.M612T 1.000 557 0% 430 42.1% 15 20% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) superfamily_Annexin,HMMPfam_Annexin ANXA6 309 genome.wustl.edu 37 5 150497319 150497319 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001155.3 -1 reviewed p.T506 1.000 128 0% 86 50% 12 0% - - - superfamily_Annexin ANXA6 309 genome.wustl.edu 37 5 150502534 150502534 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001155.3 -1 reviewed p.R393C 1.000 258 0% 161 51.6% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX FAT2 2196 genome.wustl.edu 37 5 150924607 150924607 + Silent SNP C C T rs192320051 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001447.2 -1 reviewed p.A2027 0.000 150 0% 98 46.9% 6 83.3% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like LARP1 23367 genome.wustl.edu 37 5 154092552 154092552 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015315.3 +1 validated p.A23T 0.012 175 0% 96 46.9% 0 - unknown(0) deleterious(0) - NULL GEMIN5 25929 genome.wustl.edu 37 5 154282708 154282708 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015465.3 -1 validated p.V887D 0.998 221 0% 156 51.9% 18 61.1% benign(0.005) deleterious(0.03) neutral(0.364) NULL HAVCR2 84868 genome.wustl.edu 37 5 156533767 156533767 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032782.3 -1 validated p.R89C 0.000 166 0% 131 44.3% 1 0% probably_damaging(0.983) tolerated(0.19) deleterious(0.478) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin EBF1 1879 genome.wustl.edu 37 5 158524086 158524086 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024007.3 -1 validated p.R63W 1.000 52 0% 36 55.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ODZ2 57451 genome.wustl.edu 37 5 167674055 167674055 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001122679.1 +1 inferred p.A2028 0.250 67 0% 42 50% 0 - - - - HMMPfam_RHS_repeat,superfamily_Concanavalin A-like lectins/glucanases WWC1 23286 genome.wustl.edu 37 5 167858266 167858266 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015238.2 +1 reviewed p.R699 0.117 61 0% 40 52.5% 53 50.9% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB) RARS 5917 genome.wustl.edu 37 5 167915656 167915656 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002887.3 +1 reviewed p.C32Y 0.106 170 0% 100 48% 14 50% benign(0) tolerated(1) - NULL SLIT3 6586 genome.wustl.edu 37 5 168233469 168233469 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003062.2 -1 validated p.P306L 1.000 107 0% 68 44.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,superfamily_RNI-like STC2 8614 genome.wustl.edu 37 5 172750224 172750224 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003714.2 -1 reviewed p.H168 0.061 38 0% 26 19.2% 26 11.5% - - - HMMPfam_Stanniocalcin C5orf47 133491 genome.wustl.edu 37 5 173416283 173416283 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144954.1 +1 validated p.R6Q 0.000 32 0% 17 47.1% 0 - probably_damaging(0.998) tolerated(0.3) deleterious(0.503) NULL FAM153B 202134 genome.wustl.edu 37 5 175533089 175533089 + Missense_Mutation SNP T T G rs4868592 by2Hit2Allele TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001079529.2 +1 validated p.V263G 0.001 540 0% 387 13.7% 0 - probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL CLTB 1212 genome.wustl.edu 37 5 175823488 175823488 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000310418 -1 known p.I170 0.999 385 0% 307 45.6% 1 0% - - - HMMPfam_Clathrin_lg_ch GPRIN1 114787 genome.wustl.edu 37 5 176026769 176026769 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052899.2 -1 validated p.R23* 0.007 33 0% 18 44.4% 8 62.5% - - - NULL NSD1 64324 genome.wustl.edu 37 5 176618958 176618958 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022455.4 +1 reviewed p.R334H 1.000 184 0% 153 20.9% 4 25% probably_damaging(1) deleterious(0.05) deleterious(0.845) HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT SLC34A1 6569 genome.wustl.edu 37 5 176813246 176813246 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003052.4 +1 reviewed p.R95H 0.000 95 0% 48 31.2% 0 - benign(0.002) tolerated(0.32) neutral(0.024) NULL GRK6 2870 genome.wustl.edu 37 5 176860632 176860632 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002082.3 +1 reviewed p.A231 0.000 166 0% 96 40.6% 43 51.1% - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase DDX41 51428 genome.wustl.edu 37 5 176939150 176939150 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016222.2 -1 reviewed p.P560L 1.000 63 0% 49 51% 152 48% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases RMND5B 64777 genome.wustl.edu 37 5 177569935 177569935 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022762.3 +1 provisional p.A123D 0.999 139 0% 91 59.3% 51 54.9% possibly_damaging(0.585) deleterious(0) deleterious(0.646) HMMSmart_SM00667 ZNF354C 30832 genome.wustl.edu 37 5 178506725 178506725 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014594.1 +1 provisional p.R431L 0.949 156 0% 125 45.6% 4 0% benign(0.098) deleterious(0.03) neutral(0.372) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ADAMTS2 9509 genome.wustl.edu 37 5 178541254 178541254 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014244.2 -1 reviewed p.G1084C 0.980 167 0% 111 27% 4 0% probably_damaging(0.993) tolerated(0.08) deleterious(0.750) NULL MGAT4B 11282 genome.wustl.edu 37 5 179225525 179225525 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_054013.3 -1 reviewed p.V485 0.995 67 0% 57 40.4% 224 34.3% possibly_damaging(0.86) - - NULL WRNIP1 56897 genome.wustl.edu 37 6 2783702 2783702 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020135.2 +1 reviewed p.A517T 1.000 121 0% 81 49.4% 121 46.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases LOC100288376 100288376 genome.wustl.edu 37 6 2948568 2948568 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002342609.1 +1 model p.V53I 0.000 51 0% 26 38.5% 160 48.1% - - - NULL PSMG4 389362 genome.wustl.edu 37 6 3263988 3263988 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128592.1 +1 validated p.R82H 1.000 114 0% 86 53.5% 69 47.8% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL FAM50B 26240 genome.wustl.edu 37 6 3850204 3850204 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012135.1 +1 provisional p.Y53 1.000 46 0% 24 45.8% 0 - - - - NULL RREB1 6239 genome.wustl.edu 37 6 7211817 7211817 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001003699.3 +1 reviewed p.D194 0.000 233 0% 168 48.2% 28 46.4% - - - NULL DSP 1832 genome.wustl.edu 37 6 7584150 7584150 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004415.2 +1 reviewed p.V2219I 0.390 177 0.6% 131 48.9% 321 53.8% benign(0.001) tolerated(0.31) neutral(0.027) HMMSmart_SM00250,superfamily_Plakin repeat DSP 1832 genome.wustl.edu 37 6 7585410 7585410 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004415.2 +1 reviewed p.R2639W 0.940 45 0% 35 45.7% 392 44.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00250,superfamily_Plakin repeat SLC35B3 51000 genome.wustl.edu 37 6 8420991 8420991 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142540.1 -1 validated p.L215 0.001 217 0% 138 44.2% 18 16.6% - - - HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE HIVEP1 3096 genome.wustl.edu 37 6 12120204 12120204 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002114.2 +1 validated p.L59P 1.000 123 0% 95 52.6% 1 100% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL MRS2 57380 genome.wustl.edu 37 6 24403288 24403288 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020662.2 +1 validated p.R5H 0.306 22 0% 22 50% 36 47.2% possibly_damaging(0.867) deleterious(0.01) deleterious(0.742) NULL ALDH5A1 7915 genome.wustl.edu 37 6 24528249 24528249 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_170740.1 +1 reviewed p.V413I 0.958 168 0.6% 131 32.1% 11 36.3% benign(0.005) tolerated(0.3) neutral(0.029) HMMPfam_Aldedh,superfamily_ALDH-like HIST1H2BA 255626 genome.wustl.edu 37 6 25727239 25727239 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_170610.2 +1 reviewed p.R35C 0.612 642 0.2% 583 50.6% 0 - unknown(0) deleterious(0.04) - HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold HFE 3077 genome.wustl.edu 37 6 26093013 26093013 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000410.3 +1 reviewed p.W239* 0.997 196 0% 121 48.8% 4 0% - - - HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin BTN2A2 10385 genome.wustl.edu 37 6 26392964 26392964 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006995.3 +1 reviewed p.G447 0.004 353 0% 251 45% 8 12.5% - - - HMMPfam_SPRY,HMMSmart_SM00449 HIST1H2AG 8969 genome.wustl.edu 37 6 27101160 27101160 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021064.4 +1 reviewed p.A104T 1.000 258 0% 161 49.1% 2 50% possibly_damaging(0.943) deleterious(0) deleterious(0.832) HMMSmart_SM00414,superfamily_Histone-fold ZNF192 7745 genome.wustl.edu 37 6 28120928 28120928 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006298.2 +1 validated p.N290 1.000 157 0% 108 45.4% 8 25% - - - NULL NKAPL 222698 genome.wustl.edu 37 6 28228281 28228281 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007531.1 +1 provisional p.R378* 1.000 392 0% 283 45.2% 0 - - - - HMMPfam_DUF926 GPX6 257202 genome.wustl.edu 37 6 28478591 28478591 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182701.1 -1 reviewed p.A60T 0.003 166 0% 131 31.3% 0 - benign(0) tolerated(0.54) neutral(0.007) HMMPfam_GSHPx,superfamily_Thioredoxin-like PPP1R10 5514 genome.wustl.edu 37 6 30574379 30574379 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002714.2 -1 reviewed p.R167Q 0.846 145 0% 100 42% 46 45.6% benign(0.374) tolerated(0.33) neutral(0.143) NULL TUBB 203068 genome.wustl.edu 37 6 30691166 30691166 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178014.2 +1 provisional p.G109 0.860 120 0% 73 38.4% 1275 47.3% - - - HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like PRRC2A 7916 genome.wustl.edu 37 6 31598379 31598379 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080686.2 +1 reviewed p.R756* 1.000 153 0% 97 15.5% 76 2.6% - - - NULL TNXB 7148 genome.wustl.edu 37 6 32023680 32023680 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019105.6 -1 reviewed p.Y2805 0.969 35 2.9% 26 50% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III HLA-DPB1 3115 genome.wustl.edu 37 6 33053612 33053612 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002121.4 +1 reviewed p.L235 0.973 281 0% 223 52% 58 17.2% benign(0.001) deleterious(0) neutral(0.445) NULL ZBTB22 9278 genome.wustl.edu 37 6 33283190 33283190 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145338.1 -1 validated p.R502W 1.000 57 0% 63 55.6% 49 46.9% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DAXX 1616 genome.wustl.edu 37 6 33287888 33287888 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001141970.1 -1 reviewed p.E467D 0.883 407 0% 288 15.3% 51 11.7% unknown(0) tolerated(0.13) - HMMPfam_Daxx ZBTB9 221504 genome.wustl.edu 37 6 33424240 33424240 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152735.3 +1 validated p.R455C 1.000 75 0% 42 50% 25 36% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00355 ITPR3 3710 genome.wustl.edu 37 6 33625713 33625713 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002224.2 +1 validated p.A96V 1.000 233 0% 207 42.5% 50 52% possibly_damaging(0.932) deleterious(0) deleterious(0.823) HMMPfam_Ins145_P3_rec SLC26A8 116369 genome.wustl.edu 37 6 35911811 35911811 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052961.2 -1 reviewed p.R927C 0.000 382 0% 276 46.7% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) NULL PNPLA1 285848 genome.wustl.edu 37 6 36260897 36260897 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145716.1 +1 validated p.R71 0.896 146 0% 117 41.9% 0 - - - - HMMPfam_Patatin C6orf222 389384 genome.wustl.edu 37 6 36290184 36290184 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001010903.4 -1 validated p.A503T 0.001 148 0.7% 95 45.3% 0 - benign(0.016) deleterious(0) neutral(0.445) NULL CCDC167 154467 genome.wustl.edu 37 6 37452902 37452902 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138493.2 -1 validated p.H37 0.000 59 0% 38 36.8% 66 53% - - - NULL GLO1 2739 genome.wustl.edu 37 6 38654685 38654685 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006708.2 -1 reviewed p.T50 0.949 152 0% 107 13.1% 101 7.9% - - - HMMPfam_Glyoxalase,PatternScan_GLYOXALASE_I_1,superfamily_SSF54593 DNAH8 1769 genome.wustl.edu 37 6 38810210 38810210 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001371.2 +1 validated p.G1294 0.971 306 0% 243 45.3% 0 - - - - HMMPfam_DHC_N2 KCNK5 8645 genome.wustl.edu 37 6 39159104 39159104 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003740.3 -1 reviewed p.T354 0.964 59 0% 39 46.2% 5 20% - - - NULL KCNK5 8645 genome.wustl.edu 37 6 39159383 39159383 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003740.3 -1 reviewed p.R261 0.999 65 0% 49 61.2% 5 40% - - - superfamily_SSF81324 DAAM2 23500 genome.wustl.edu 37 6 39869229 39869229 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015345.2 +1 validated p.R987Q 1.000 32 0% 25 28% 0 - probably_damaging(0.955) tolerated(0.07) deleterious(0.718) HMMSmart_SM00498,superfamily_Formin homology 2 domain (FH2 domain) CCND3 896 genome.wustl.edu 37 6 41903836 41903836 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001760.3 -1 reviewed p.R241W 0.954 78 0% 66 47% 37 56.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cyclin_C,superfamily_Cyclin_like TRERF1 55809 genome.wustl.edu 37 6 42200618 42200618 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033502.2 -1 reviewed p.R1027* 1.000 109 0% 78 56.4% 4 25% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PTK7 5754 genome.wustl.edu 37 6 43096864 43096864 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002821.3 +1 reviewed p.R77W 0.990 40 0% 25 48% 67 47.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin PTK7 5754 genome.wustl.edu 37 6 43126632 43126632 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000489707 +1 known p.R228H 0.682 122 0% 60 41.7% 147 49.6% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like) PTK7 5754 genome.wustl.edu 37 6 43127542 43127542 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002821.3 +1 reviewed p.R964C 1.000 142 0% 82 45.1% 155 54.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) C6orf108 10591 genome.wustl.edu 37 6 43193753 43193753 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_199184.1 -1 reviewed p.P132T 0.000 17 0% 15 33.3% 13 38.4% benign(0.007) - - HMMPfam_Nuc_deoxyrib_tr TTBK1 84630 genome.wustl.edu 37 6 43222838 43222838 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032538.1 +1 validated p.A210T 1.000 180 0% 134 43.3% 0 - probably_damaging(0.997) tolerated(0.09) deleterious(0.762) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase GTPBP2 54676 genome.wustl.edu 37 6 43589779 43589779 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000432918 -1 known p.R100C 0.119 212 0% 132 20.5% 49 16.3% - - - superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain TNFRSF21 27242 genome.wustl.edu 37 6 47253783 47253783 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014452.3 -1 reviewed p.P215 0.000 176 0% 131 40.5% 82 52.4% - - - NULL MCM3 4172 genome.wustl.edu 37 6 52142395 52142395 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002388.3 -1 reviewed p.G324E 1.000 163 0% 96 53.1% 106 56.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540 HCRTR2 3062 genome.wustl.edu 37 6 55147036 55147036 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001526.3 +1 reviewed p.E373D 1.000 107 0% 86 11.6% 0 - benign(0.096) tolerated(0.12) neutral(0.268) superfamily_SSF81321 DST 667 genome.wustl.edu 37 6 56716220 56716220 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000370754 -1 known p.A200 0.380 221 0% 129 49.6% 0 - - - - superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_Calponin-homology domain CH-domain COL9A1 1297 genome.wustl.edu 37 6 70992691 70992691 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_078485.3 -1 reviewed p.A22V 0.019 117 0% 81 44.4% 0 - unknown(0) tolerated(0.33) - NULL TBX18 9096 genome.wustl.edu 37 6 85453985 85453985 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080508.1 -1 provisional p.R333H 1.000 110 0% 71 23.9% 34 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_TBOX MDN1 23195 genome.wustl.edu 37 6 90402224 90402224 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014611.1 -1 provisional p.H3509N 1.000 73 1.4% 60 16.7% 10 40% probably_damaging(0.998) tolerated(0.07) deleterious(0.793) NULL KLHL32 114792 genome.wustl.edu 37 6 97533123 97533123 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052904.3 +1 validated p.R178H 1.000 147 0% 109 57.8% 2 0% benign(0.091) deleterious(0.03) neutral(0.371) HMMPfam_BACK COQ3 51805 genome.wustl.edu 37 6 99828081 99828081 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017421.3 -1 validated p.R124G 1.000 101 0% 81 35.8% 11 9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_S-adenosyl-L-methionine-dependent methyltransferases PNISR 25957 genome.wustl.edu 37 6 99857170 99857170 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015491.1 -1 validated p.W184* 1.000 337 0% 238 42.9% 33 39.3% - - - NULL SIM1 6492 genome.wustl.edu 37 6 100911316 100911316 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005068.2 -1 reviewed p.R10Q 1.000 500 0% 406 51.2% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_HLH,HMMSmart_HLH PRDM1 639 genome.wustl.edu 37 6 106553745 106553745 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001198.3 +1 reviewed p.N570 0.617 53 0% 44 54.5% 14 50% - - - superfamily_SSF57667 SEC63 11231 genome.wustl.edu 37 6 108197771 108197771 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007214.4 -1 reviewed p.E677 1.000 379 0% 280 43.9% 86 52.3% - - - HMMPfam_Sec63,HMMSmart_SEC63 FIG4 9896 genome.wustl.edu 37 6 110112620 110112620 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014845.5 +1 reviewed p.T741M 1.000 39 0% 41 41.5% 22 31.8% probably_damaging(0.989) deleterious(0.04) deleterious(0.788) NULL DDO 8528 genome.wustl.edu 37 6 110734612 110734612 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003649.2 -1 reviewed p.T46 0.060 99 0% 78 55.1% 0 - - - - HMMPfam_DAO,superfamily_Nucleotide-binding domain CDK19 23097 genome.wustl.edu 37 6 110942435 110942435 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015076.3 -1 reviewed p.G417R 0.820 49 0% 35 37.1% 9 11.1% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL ROS1 6098 genome.wustl.edu 37 6 117631392 117631392 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002944.2 -1 reviewed p.R2096W 0.993 130 0% 109 46.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like HEY2 23493 genome.wustl.edu 37 6 126080483 126080483 + Missense_Mutation SNP T T G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012259.2 +1 reviewed p.H183Q 0.954 29 0% 34 47.1% 101 71.2% probably_damaging(0.999) tolerated(0.22) deleterious(0.532) NULL THEMIS 387357 genome.wustl.edu 37 6 128150873 128150873 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001010923.2 -1 reviewed p.A153T 0.984 249 0% 153 20.9% 0 - benign(0.004) tolerated(0.57) neutral(0.006) NULL LAMA2 3908 genome.wustl.edu 37 6 129573424 129573424 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000426.3 +1 reviewed p.M694V 1.000 132 0% 100 45% 0 - benign(0) tolerated(0.34) neutral(0.023) HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB CTAGE9 643854 genome.wustl.edu 37 6 132032036 132032036 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145659.1 -1 provisional p.S41L 0.000 1115 0% 912 31.1% 0 - benign(0) tolerated(0.29) neutral(0.029) NULL MOXD1 26002 genome.wustl.edu 37 6 132694010 132694010 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015529.2 -1 validated p.L180 0.003 175 0% 127 42.5% 1 0% - - - HMMPfam_Cu2_monooxygen,superfamily_PHM/PNGase F TAAR1 134864 genome.wustl.edu 37 6 132966642 132966642 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138327.1 -1 provisional p.G167 0.005 126 0% 72 44.4% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 HBS1L 10767 genome.wustl.edu 37 6 135371730 135371730 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006620.3 -1 reviewed p.S33 0.027 69 0% 60 23.3% 41 7.3% - - - HMMPfam_DUF1916 BCLAF1 9774 genome.wustl.edu 37 6 136593180 136593180 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014739.2 -1 reviewed p.T666A 1.000 274 0% 219 15.1% 68 26.4% possibly_damaging(0.478) tolerated(0.5) neutral(0.168) NULL REPS1 85021 genome.wustl.edu 37 6 139251114 139251114 + Nonsense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000415951 -1 known p.G131* 1.000 188 0% 113 46.9% 17 5.8% probably_damaging(0.996) tolerated(0.05) deleterious(0.807) NULL HECA 51696 genome.wustl.edu 37 6 139487597 139487597 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016217.2 +1 reviewed p.R150C 1.000 44 0% 22 50% 9 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PPIL4 85313 genome.wustl.edu 37 6 149826641 149826641 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_139126.2 -1 reviewed p.R476Q 1.000 672 0% 575 46.6% 35 45.7% unknown(0) - - NULL LRP11 84918 genome.wustl.edu 37 6 150174173 150174173 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032832.5 -1 validated p.A246V 0.997 63 0% 53 43.4% 9 11.1% benign(0.001) tolerated(0.5) neutral(0.010) HMMSmart_SM00089 LRP11 84918 genome.wustl.edu 37 6 150174287 150174287 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032832.5 -1 validated p.A208V 1.000 67 0% 38 52.6% 3 0% benign(0.073) tolerated(0.39) neutral(0.021) NULL SYNJ2 8871 genome.wustl.edu 37 6 158497732 158497732 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003898.3 +1 reviewed p.Y789 1.000 57 0% 47 61.7% 1 0% - - - HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like TULP4 56995 genome.wustl.edu 37 6 158922878 158922878 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020245.3 +1 validated p.T728M 0.023 106 0% 75 45.3% 15 40% benign(0.142) tolerated(0.13) neutral(0.265) NULL FNDC1 84624 genome.wustl.edu 37 6 159660852 159660852 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032532.2 +1 validated p.T1495M 0.000 195 0% 176 38.1% 0 - unknown(0) tolerated(0.07) - NULL PNLDC1 154197 genome.wustl.edu 37 6 160230078 160230078 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173516.1 +1 provisional p.R213H 0.997 237 0% 160 20.6% 0 - probably_damaging(0.984) deleterious(0.01) deleterious(0.836) HMMPfam_CAF1,superfamily_Ribonuclease H-like IGF2R 3482 genome.wustl.edu 37 6 160467666 160467666 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000876.2 +1 reviewed p.Q680 0.994 196 0% 126 40.5% 23 56.5% - - - HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain PLG 5340 genome.wustl.edu 37 6 161160209 161160209 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000301.3 +1 reviewed p.R663* 0.001 325 0% 223 43% 0 - - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys PACRG 135138 genome.wustl.edu 37 6 163235240 163235240 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152410.2 +1 reviewed p.R73Q 1.000 184 0% 110 41.8% 0 - probably_damaging(0.997) tolerated(0.06) deleterious(0.788) HMMPfam_ParcG RPS6KA2 6196 genome.wustl.edu 37 6 166831775 166831775 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001006932.1 -1 reviewed p.I634F 0.996 111 0% 83 44.6% 14 28.5% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase FRMD1 79981 genome.wustl.edu 37 6 168465705 168465705 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024919.3 -1 validated p.H165L 1.000 43 0% 36 13.9% 0 - benign(0.096) deleterious(0.01) neutral(0.413) HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295 ADAP1 11033 genome.wustl.edu 37 7 943775 943775 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000453823 -1 known p.M155T 0.797 136 0% 82 18.3% 30 20% - - - HMMSmart_SM00233,superfamily_PH domain-like IQCE 23288 genome.wustl.edu 37 7 2617926 2617926 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152558.3 +1 validated p.R172 0.721 84 0% 63 44.4% 12 66.6% - - - NULL GNA12 2768 genome.wustl.edu 37 7 2770892 2770892 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007353.2 -1 validated p.E357K 1.000 165 0% 115 49.6% 49 57.1% probably_damaging(0.994) tolerated(0.13) deleterious(0.705) HMMPfam_G-alpha,superfamily_SSF52540 KIAA0415 9907 genome.wustl.edu 37 7 4825938 4825938 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014855.1 +1 validated p.P397L 0.969 79 0% 66 48.5% 32 53.1% probably_damaging(1) tolerated(1) deleterious(0.500) NULL RADIL 55698 genome.wustl.edu 37 7 4875989 4875989 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018059.4 -1 validated p.H261 0.917 27 0% 26 38.5% 0 - - - - superfamily_SMAD/FHA domain WIPI2 26100 genome.wustl.edu 37 7 5270528 5270528 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015610.3 +1 validated p.R439C 1.000 85 0% 77 16.9% 132 9% benign(0.002) tolerated(0.06) neutral(0.323) NULL SLC29A4 222962 genome.wustl.edu 37 7 5340114 5340114 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040661.1 +1 reviewed p.R424H 0.998 51 0% 39 46.2% 45 37.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nucleoside_tran,superfamily_MFS general substrate transporter TNRC18 84629 genome.wustl.edu 37 7 5347800 5347800 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080495.2 -1 provisional p.A2948 0.989 71 0% 44 40.9% 176 43.7% - - - HMMSmart_SM00439 RNF216 54476 genome.wustl.edu 37 7 5781075 5781075 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207111.2 -1 reviewed p.S191 0.000 370 0% 314 15.6% 14 50% - - - NULL RSPH10B 222967 genome.wustl.edu 37 7 5966040 5966040 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173565.3 -1 validated p.P858T 0.003 1308 0% 1056 9.2% 1 0% unknown(0) tolerated(0.12) - NULL ZNF853 54753 genome.wustl.edu 37 7 6662274 6662274 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017560.1 +1 provisional p.S551N 1.000 18 0% 13 61.5% 19 68.4% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers COL28A1 340267 genome.wustl.edu 37 7 7571300 7571300 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001037763.2 -1 validated p.K120N 0.655 153 0% 111 49.5% 0 - benign(0.406) deleterious(0.04) deleterious(0.479) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like ENSG00000248675 0 genome.wustl.edu 37 7 10492277 10492277 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000510654 -1 known NULL 0.995 262 0% 178 44.4% 0 - - - - - DGKB 1607 genome.wustl.edu 37 7 14217690 14217690 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004080.2 -1 reviewed p.R738W 0.081 90 0% 70 42.9% 0 - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMPfam_DAGK_acc,HMMSmart_SM00045 AGR2 10551 genome.wustl.edu 37 7 16841402 16841402 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006408.3 -1 validated p.S7P 1.000 351 0.3% 289 39.1% 147 65.9% probably_damaging(0.956) deleterious(0.01) deleterious(0.805) NULL HDAC9 9734 genome.wustl.edu 37 7 18875116 18875116 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178425.2 +1 reviewed p.Q831 1.000 153 0% 85 38.8% 0 - - - - HMMPfam_Hist_deacetyl,superfamily_SSF52768 RAPGEF5 9771 genome.wustl.edu 37 7 22165271 22165271 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012294.3 -1 validated p.M676I 1.000 297 0% 222 41% 5 60% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF RAPGEF5 9771 genome.wustl.edu 37 7 22184733 22184733 + Splice_Site SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000258735 -1 known e9-1 0.004 193 0% 130 46.9% 5 60% - - - - C7orf46 340277 genome.wustl.edu 37 7 23737908 23737908 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_199136.3 +1 validated p.T245 0.000 240 0% 163 39.9% 7 42.8% - - - NULL STK31 56164 genome.wustl.edu 37 7 23830457 23830457 + Silent SNP G G A rs138551298 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031414.3 +1 reviewed p.S884 0.998 293 0% 250 48.4% 0 - - - - HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) HOXA1 3198 genome.wustl.edu 37 7 27135378 27135378 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005522.4 -1 reviewed p.R52C 1.000 11 0% 20 55% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL CREB5 9586 genome.wustl.edu 37 7 28547316 28547316 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182898.2 +1 reviewed p.H84 0.258 118 0% 94 43.6% 0 - - - - NULL NOD1 10392 genome.wustl.edu 37 7 30491780 30491780 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006092.2 -1 reviewed p.T418M 0.000 66 0% 47 66% 6 50% possibly_damaging(0.87) deleterious(0.03) deleterious(0.703) NULL DPY19L1 23333 genome.wustl.edu 37 7 34981459 34981459 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015283.1 -1 validated p.A463V 0.979 202 0% 137 41.6% 6 16.6% benign(0) tolerated(0.81) neutral(0.001) HMMPfam_DUF2211 DPY19L1 23333 genome.wustl.edu 37 7 35051040 35051040 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015283.1 -1 validated p.R118Q 1.000 101 0% 65 40% 17 52.9% probably_damaging(0.992) deleterious(0.04) deleterious(0.796) HMMPfam_DUF2211 AMPH 273 genome.wustl.edu 37 7 38502604 38502604 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001635.2 -1 reviewed p.A287T 0.995 413 0% 302 52% 0 - probably_damaging(0.985) tolerated(0.12) deleterious(0.693) NULL POU6F2 11281 genome.wustl.edu 37 7 39472880 39472880 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007252.3 +1 reviewed p.Q411* 1.000 59 0% 61 37.7% 1 0% - - - NULL RALA 5898 genome.wustl.edu 37 7 39736420 39736420 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005402.2 +1 reviewed p.V154M 1.000 129 0% 88 28.4% 51 45% probably_damaging(0.989) tolerated(0.24) deleterious(0.477) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases INHBA 3624 genome.wustl.edu 37 7 41739857 41739857 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002192.2 -1 reviewed p.A39V 1.000 75 0% 43 51.2% 0 - probably_damaging(0.989) deleterious(0.02) deleterious(0.823) NULL URGCP 55665 genome.wustl.edu 37 7 43917578 43917578 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001077663.1 -1 validated p.R495M 0.846 185 0% 131 55% 20 50% probably_damaging(0.983) deleterious(0.04) deleterious(0.778) NULL ZMIZ2 83637 genome.wustl.edu 37 7 44805066 44805066 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031449.3 +1 validated p.H710 1.000 37 0% 18 50% 133 40.6% - - - NULL NACAD 23148 genome.wustl.edu 37 7 45121204 45121204 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000258775 -1 known p.R1418Q 0.937 156 0% 111 48.6% 1 100% probably_damaging(0.963) deleterious(0.01) deleterious(0.811) HMMPfam_NAC NACAD 23148 genome.wustl.edu 37 7 45124638 45124638 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000258775 -1 known p.R381W 1.000 44 0% 21 61.9% 3 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TNS3 64759 genome.wustl.edu 37 7 47408605 47408605 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022748.10 -1 validated p.D546 0.001 44 0% 44 34.1% 16 56.2% - - - NULL PKD1L1 168507 genome.wustl.edu 37 7 47945516 47945516 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138295.2 -1 reviewed p.N482 0.001 157 0% 113 43.4% 0 - - - - NULL VOPP1 81552 genome.wustl.edu 37 7 55560040 55560040 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030796.3 -1 validated p.P88L 0.944 83 0% 34 58.8% 29 65.5% unknown(0) deleterious(0.01) - NULL SEPT14 346288 genome.wustl.edu 37 7 55910722 55910722 + Silent SNP G G A rs185926188 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207366.2 -1 validated p.R157 0.000 260 0% 168 39.9% 0 - - - - HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF713 349075 genome.wustl.edu 37 7 56007670 56007670 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182633.1 +1 provisional p.R422C 0.001 37 0% 29 37.9% 2 100% benign(0.003) deleterious(0.01) neutral(0.406) NULL ZNF107 51427 genome.wustl.edu 37 7 64167949 64167949 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001013746.1 +1 validated p.R423* 0.000 66 0% 48 22.9% 2 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 LOC442572 442572 genome.wustl.edu 37 7 66746569 66746569 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_499314.5 +1 model p.H196 0.620 101 0% 93 36.6% 0 - - - - NULL LIMK1 3984 genome.wustl.edu 37 7 73510978 73510978 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002314.2 +1 reviewed p.S60L 0.594 79 0% 51 43.1% 27 40.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain) LIMK1 3984 genome.wustl.edu 37 7 73520260 73520260 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002314.2 +1 reviewed p.R222 0.992 94 0% 55 41.8% 23 34.7% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like GTF2IRD2B 389524 genome.wustl.edu 37 7 74524818 74524820 + In_Frame_Del DEL TGG TGG - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 TGG TGG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001003795.2 +1 reviewed p.V23in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL DTX2 113878 genome.wustl.edu 37 7 76112259 76112259 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102594.1 +1 validated p.A235T 0.005 185 0% 103 33% 26 53.8% benign(0) tolerated(0.69) neutral(0.002) NULL CCDC146 57639 genome.wustl.edu 37 7 76797069 76797069 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020879.2 +1 validated p.V28 0.004 770 0% 631 21.4% 1 0% - - - NULL PHTF2 57157 genome.wustl.edu 37 7 77552019 77552019 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127357.1 +1 validated p.R314H 0.944 114 0% 107 48.6% 10 50% possibly_damaging(0.888) deleterious(0.03) deleterious(0.712) NULL CACNA2D1 781 genome.wustl.edu 37 7 81601173 81601173 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000443883 -1 known p.R198Q 0.138 108 0% 65 32.3% 0 - - - - NULL CACNA2D1 781 genome.wustl.edu 37 7 81746397 81746397 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000722.2 -1 reviewed p.H163 0.995 289 0% 233 51.1% 0 - - - - HMMPfam_VWA_N PCLO 27445 genome.wustl.edu 37 7 82467535 82467535 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033026.5 -1 validated p.G4741C 1.000 205 0% 109 39.4% 2 50% unknown(0) - - HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) GRM3 2913 genome.wustl.edu 37 7 86394555 86394555 + Nonsense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000840.2 +1 reviewed p.E32* 1.000 218 0% 152 52.6% 0 - - - - superfamily_Periplasmic binding protein-like I DMTF1 9988 genome.wustl.edu 37 7 86815218 86815218 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142327.1 +1 reviewed p.R375C 1.000 481 0.4% 318 46.2% 18 38.8% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) HMMSmart_SM00717 ENSG00000240720 0 genome.wustl.edu 37 7 91779878 91779878 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000430130 -1 known p.R750C 0.000 298 0% 207 46.4% 0 - benign(0) tolerated(0.18) neutral(0.056) NULL COL1A2 1278 genome.wustl.edu 37 7 94027072 94027072 + Splice_Site SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000089.3 +1 reviewed e2+2 0.999 101 0% 78 16.7% 0 - - - - - COL1A2 1278 genome.wustl.edu 37 7 94058560 94058560 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000089.3 +1 reviewed p.R1258C 1.000 139 0% 136 47.1% 194 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_COLFI,HMMSmart_SM00038 TMEM130 222865 genome.wustl.edu 37 7 98453690 98453690 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134450.1 -1 validated p.R223M 0.041 108 0% 75 58.7% 0 - benign(0.006) deleterious(0.01) neutral(0.406) superfamily_PKD domain SMURF1 57154 genome.wustl.edu 37 7 98633252 98633252 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020429.1 -1 reviewed p.V659M 1.000 122 0% 90 53.3% 13 61.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain SMURF1 57154 genome.wustl.edu 37 7 98648573 98648573 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020429.1 -1 reviewed p.Y283 0.977 80 0% 52 34.6% 0 - - - - NULL PTCD1 26024 genome.wustl.edu 37 7 99032678 99032678 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015545.2 -1 validated p.T63M 0.000 49 0% 42 42.9% 16 56.2% probably_damaging(0.983) tolerated(0.53) neutral(0.436) NULL ZNF394 84124 genome.wustl.edu 37 7 99091338 99091338 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032164.2 -1 provisional p.S500 0.000 430 0% 314 43% 10 40% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZKSCAN5 23660 genome.wustl.edu 37 7 99128789 99128789 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014569.3 +1 reviewed p.Y479 0.389 80 0% 70 28.6% 6 66.6% - - - NULL ZNF498 221785 genome.wustl.edu 37 7 99227337 99227337 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145115.2 +1 validated p.R443 0.009 51 0% 27 40.7% 17 41.1% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CYP3A5 1577 genome.wustl.edu 37 7 99270241 99270241 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000777.2 -1 reviewed p.L94 0.978 241 0% 149 41.6% 0 - - - - HMMPfam_p450,superfamily_Cytochrome P450 MCM7 4176 genome.wustl.edu 37 7 99691962 99691962 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005916.3 -1 reviewed p.R561H 1.000 46 0% 37 35.1% 230 31.3% probably_damaging(0.973) tolerated(0.23) neutral(0.456) HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases GIGYF1 64599 genome.wustl.edu 37 7 100284396 100284396 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022574.4 -1 validated p.H190 0.671 65 0% 49 34.7% 14 64.2% - - - NULL ZAN 7455 genome.wustl.edu 37 7 100346071 100346071 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003386.1 +1 reviewed p.P409 0.000 109 0% 53 45.3% 0 - - - - HMMPfam_MAM,HMMSmart_SM00137 SLC12A9 56996 genome.wustl.edu 37 7 100457557 100457557 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020246.2 +1 validated p.P343H 1.000 140 0% 86 36% 41 58.5% benign(0.046) deleterious(0.01) neutral(0.408) HMMPfam_AA_permease SRRT 51593 genome.wustl.edu 37 7 100479744 100479744 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015908.5 +1 validated p.L157I 0.346 238 0% 137 48.2% 73 43.8% benign(0.224) tolerated(0.27) neutral(0.056) NULL ACHE 43 genome.wustl.edu 37 7 100491461 100491461 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015831.2 -1 reviewed p.N131 0.892 92 0% 46 41.3% 1 0% - - - HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_SSF53474 CUX1 1523 genome.wustl.edu 37 7 101821817 101821817 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181552.2 +1 reviewed p.I299 0.572 44 0% 26 65.4% 56 55.3% - - - NULL SLC26A5 375611 genome.wustl.edu 37 7 103053516 103053516 + Silent SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198999.2 -1 reviewed p.G112 0.998 174 0.6% 104 37.5% 0 - - - - PatternScan_SLC26A RELN 5649 genome.wustl.edu 37 7 103138295 103138295 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005045.3 -1 reviewed p.G2974 0.997 122 0% 91 36.3% 0 - - - - superfamily_Sialidase SLC26A4 5172 genome.wustl.edu 37 7 107342475 107342475 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000441.1 +1 reviewed p.D669 0.959 155 0% 121 10.7% 0 - - - - HMMPfam_STAS,superfamily_STAS DOCK4 9732 genome.wustl.edu 37 7 111372325 111372325 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000445943 -1 known p.R1837* 0.654 120 0% 97 35.1% 2 50% benign(0) tolerated(0.13) neutral(0.253) NULL AASS 10157 genome.wustl.edu 37 7 121756712 121756712 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005763.3 -1 reviewed p.R290H 1.000 85 0% 70 44.3% 1 100% possibly_damaging(0.841) tolerated(0.18) neutral(0.378) HMMPfam_AlaDh_PNT_C SLC13A1 6561 genome.wustl.edu 37 7 122768983 122768983 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022444.3 -1 validated p.T350I 1.000 134 0% 108 15.7% 0 - probably_damaging(0.999) tolerated(0.27) deleterious(0.524) HMMPfam_Na_sulph_symp FLNC 2318 genome.wustl.edu 37 7 128484110 128484110 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001458.4 +1 reviewed p.G994 0.156 68 0% 45 44.4% 1 0% - - - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin NRF1 4899 genome.wustl.edu 37 7 129394914 129394914 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040110.1 +1 reviewed p.G469S 1.000 74 0% 61 47.5% 18 44.4% possibly_damaging(0.738) tolerated(0.29) neutral(0.299) HMMPfam_Nrf1_activ_bdg C7orf45 136263 genome.wustl.edu 37 7 129855957 129855957 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145268.3 +1 validated p.R128* 0.656 218 0% 181 27.6% 0 - - - - NULL CPA5 93979 genome.wustl.edu 37 7 130007767 130007767 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127441.1 +1 validated p.A353 0.025 181 0% 118 44.1% 0 - - - - HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases PLXNA4 91584 genome.wustl.edu 37 7 131895762 131895762 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020911.1 -1 validated p.S746 0.021 74 0% 47 53.2% 0 - - - - NULL CNOT4 4850 genome.wustl.edu 37 7 135078791 135078791 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013316.2 -1 validated p.A499 1.000 157 0% 88 50% 19 42.1% - - - NULL NUP205 23165 genome.wustl.edu 37 7 135327969 135327969 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015135.2 +1 validated p.R1808C 1.000 250 0% 160 50% 52 34.6% probably_damaging(0.983) deleterious(0.02) deleterious(0.812) NULL CHRM2 1129 genome.wustl.edu 37 7 136700641 136700641 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000739.2 +1 reviewed p.T343 0.002 121 0% 94 38.3% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like DGKI 9162 genome.wustl.edu 37 7 137269964 137269964 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004717.2 -1 reviewed p.G518 0.993 239 0% 215 45.6% 0 - - - - NULL HIPK2 28996 genome.wustl.edu 37 7 139281657 139281657 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022740.4 -1 validated p.A492V 1.000 111 0% 70 55.7% 5 0% - - - NULL HIPK2 28996 genome.wustl.edu 37 7 139416550 139416550 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000263551 -1 known p.V95A 0.994 385 0% 278 42.8% 3 100% possibly_damaging(0.76) tolerated(0.23) neutral(0.323) NULL TBXAS1 6916 genome.wustl.edu 37 7 139636080 139636080 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001061.4 +1 reviewed p.A143T 0.761 171 0% 128 11.7% 0 - benign(0.025) tolerated(1) neutral(0.001) HMMPfam_p450,superfamily_Cytochrome P450 RAB19 401409 genome.wustl.edu 37 7 140125813 140125813 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001008749.2 +1 validated p.V220M 0.497 82 0% 61 31.1% 4 50% benign(0) tolerated(0.99) - HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 MGAM 8972 genome.wustl.edu 37 7 141754679 141754679 + Missense_Mutation SNP A A C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004668.2 +1 reviewed p.E1095D 0.781 246 0% 183 46.4% 0 - benign(0.113) tolerated(0.61) neutral(0.013) NULL KEL 3792 genome.wustl.edu 37 7 142655048 142655048 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000420.2 -1 reviewed p.R180C 0.002 136 0% 108 42.6% 0 - possibly_damaging(0.937) deleterious(0.01) deleterious(0.788) "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" KEL 3792 genome.wustl.edu 37 7 142655451 142655451 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000460479 -1 known p.H166Y 1.000 161 0.6% 116 44% 0 - - - - "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" ZYX 7791 genome.wustl.edu 37 7 143085432 143085432 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001010972.1 +1 reviewed p.E382K 0.938 36 0% 33 42.4% 112 27.6% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL CNTNAP2 26047 genome.wustl.edu 37 7 147259300 147259300 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014141.5 +1 reviewed p.P616 0.986 246 0% 195 15.9% 0 - - - - superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases ZNF786 136051 genome.wustl.edu 37 7 148767621 148767621 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152411.3 -1 validated p.A748V 0.010 283 0.7% 213 24.4% 20 30% possibly_damaging(0.836) tolerated(0.36) neutral(0.340) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF786 136051 genome.wustl.edu 37 7 148769134 148769134 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152411.3 -1 validated p.V244M 0.002 28 0% 12 41.7% 13 61.5% possibly_damaging(0.653) deleterious(0.02) deleterious(0.613) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF425 155054 genome.wustl.edu 37 7 148801430 148801430 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001661.2 -1 validated p.S511 0.000 16 0% 12 50% 10 20% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF777 27153 genome.wustl.edu 37 7 149153005 149153005 + Missense_Mutation SNP C C T rs181242161 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015694.2 -1 validated p.V37I 0.004 246 0% 179 43% 17 35.2% benign(0) tolerated(0.99) - NULL SSPO 23145 genome.wustl.edu 37 7 149491936 149491936 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000378016 +1 known p.S2046N 0.003 88 0% 47 40.4% 0 - - - - NULL SSPO 23145 genome.wustl.edu 37 7 149509485 149509485 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000378016 +1 known p.R3295W 0.374 15 0% 12 58.3% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ABCB8 11194 genome.wustl.edu 37 7 150732674 150732674 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007188.3 +1 reviewed p.R258* 1.000 25 0% 27 55.6% 29 10.3% - - - HMMPfam_ABC_membrane,superfamily_ABC_TM_1 CHPF2 54480 genome.wustl.edu 37 7 150932235 150932235 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019015.1 +1 provisional p.R122H 1.000 62 0% 46 41.3% 50 38% possibly_damaging(0.949) deleterious(0) deleterious(0.838) NULL GALNT11 63917 genome.wustl.edu 37 7 151818003 151818003 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022087.2 +1 validated p.R549W 0.844 98 0% 73 45.2% 44 36.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins MLL3 58508 genome.wustl.edu 37 7 151921189 151921189 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_170606.2 -1 reviewed p.C1078 0.995 194 0% 122 45.1% 6 33.3% - - - NULL HTR5A 3361 genome.wustl.edu 37 7 154863212 154863212 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024012.2 +1 reviewed p.A201 1.000 123 0% 82 47.6% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like RBM33 155435 genome.wustl.edu 37 7 155457912 155457912 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_053043.2 +1 validated p.S29 0.991 241 0% 157 37.6% 6 33.3% - - - NULL UBE3C 9690 genome.wustl.edu 37 7 156963054 156963054 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014671.2 +1 validated p.G84 0.885 296 0.3% 198 47% 23 43.4% - - - NULL ARHGEF10 9639 genome.wustl.edu 37 8 1905109 1905109 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014629.2 +1 reviewed p.A1239T 0.000 73 0% 64 60.9% 4 50% benign(0) tolerated(0.79) neutral(0.001) NULL CSMD1 64478 genome.wustl.edu 37 8 2815273 2815273 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033225.5 -1 validated p.T3254 0.086 183 0% 124 49.2% 0 - - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 4277528 4277528 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033225.5 -1 validated p.W121* 1.000 178 0% 108 50% 0 - - - - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD1 64478 genome.wustl.edu 37 8 4495011 4495011 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033225.5 -1 validated p.Y52C 0.998 160 0% 113 48.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ANGPT2 285 genome.wustl.edu 37 8 6366542 6366542 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001147.2 -1 reviewed p.S414N 1.000 514 0% 424 48.1% 16 0% possibly_damaging(0.583) tolerated(0.16) neutral(0.260) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like PPP1R3B 79660 genome.wustl.edu 37 8 8998590 8998590 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024607.2 -1 validated p.T191M 1.000 301 0% 263 44.1% 5 40% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_CBM_21 MSR1 4481 genome.wustl.edu 37 8 15978081 15978081 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138715.2 -1 reviewed p.S356 0.000 43 0% 30 40% 0 - - - - HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like ASAH1 427 genome.wustl.edu 37 8 17930774 17930774 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127505.1 -1 reviewed p.A62V 0.002 135 0% 110 40.9% 0 - unknown(0) tolerated(0.24) - NULL HR 55806 genome.wustl.edu 37 8 21976493 21976493 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005144.4 -1 reviewed p.D1061 0.998 25 0.000 9 0.556 37 24.3% - - - HMMSmart_SM00558 NEFM 4741 genome.wustl.edu 37 8 24771945 24771945 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005382.2 +1 reviewed p.A213 0.907 33 0% 27 51.9% 0 - - - - HMMPfam_Filament NEFM 4741 genome.wustl.edu 37 8 24775778 24775778 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005382.2 +1 reviewed p.G804W 1.000 277 0% 154 40.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL DPYSL2 1808 genome.wustl.edu 37 8 26509877 26509877 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001386.4 +1 validated p.T462 0.294 158 0% 125 46.4% 6 0% - - - NULL ADRA1A 148 genome.wustl.edu 37 8 26721921 26721921 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033303.3 -1 reviewed p.A189V 0.997 46 0% 25 44% 0 - benign(0.017) tolerated(0.07) neutral(0.320) HMMPfam_7tm_1,superfamily_SSF81321 CHRNA2 1135 genome.wustl.edu 37 8 27321501 27321501 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000742.3 -1 reviewed p.G153 0.997 153 0% 83 50.6% 0 - - - - HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like WHSC1L1 54904 genome.wustl.edu 37 8 38146045 38146045 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_023034.1 -1 reviewed p.R1154Q 0.995 197 0% 157 49% 8 62.5% benign(0.242) tolerated(0.31) neutral(0.052) HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain TACC1 6867 genome.wustl.edu 37 8 38693782 38693782 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006283.2 +1 reviewed p.V606M 0.998 171 0.6% 122 47.5% 1 0% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_TACC GOLGA7 51125 genome.wustl.edu 37 8 41355115 41355115 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001002296.1 +1 validated p.E67K 1.000 234 0% 194 44.8% 46 65.2% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_Erf4 AGPAT6 137964 genome.wustl.edu 37 8 41476220 41476220 + Silent SNP C C T rs192754152 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178819.3 +1 validated p.G357 0.745 234 0% 156 12.8% 75 8% - - - NULL ANK1 286 genome.wustl.edu 37 8 41575150 41575150 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142446.1 -1 reviewed p.R459Q 1.000 40 0% 40 52.5% 0 - possibly_damaging(0.93) tolerated(0.19) neutral(0.426) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK KAT6A 7994 genome.wustl.edu 37 8 41791087 41791087 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099412.1 -1 validated p.S1551G 1.000 187 0% 120 51.7% 25 36% probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL IKBKB 3551 genome.wustl.edu 37 8 42166539 42166539 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001556.1 +1 validated p.Q230* 1.000 58 0% 32 40.6% 5 0% - - - superfamily_Kinase_like IKBKB 3551 genome.wustl.edu 37 8 42176889 42176889 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001556.1 +1 validated p.S489N 1.000 175 0% 126 37.3% 14 35.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRKDC 5591 genome.wustl.edu 37 8 48711895 48711895 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001081640.1 -1 validated p.R3391Q 0.000 80 0% 64 37.5% 92 46.7% - - - NULL RP1 6101 genome.wustl.edu 37 8 55534071 55534071 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006269.1 +1 reviewed p.A182V 1.000 81 0% 41 43.9% 0 - benign(0.003) tolerated(0.12) neutral(0.261) HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837 TGS1 96764 genome.wustl.edu 37 8 56717540 56717540 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024831.6 +1 validated p.D696 0.998 274 0% 206 51% 29 65.5% - - - HMMPfam_Methyltransf_15,superfamily_S-adenosyl-L-methionine-dependent methyltransferases MOS 4342 genome.wustl.edu 37 8 57026041 57026041 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005372.1 -1 validated p.C167 0.001 39 0% 47 46.8% 0 - - - - superfamily_Kinase_like,HMMPfam_Pkinase SULF1 23213 genome.wustl.edu 37 8 70517160 70517160 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128204.1 +1 validated p.P457L 1.000 138 0% 95 47.4% 8 0% benign(0.009) tolerated(1) neutral(0.001) superfamily_Alkaline_phosphatase_core PAG1 55824 genome.wustl.edu 37 8 81897531 81897531 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018440.3 -1 reviewed p.Q119R 1.000 97 0% 52 42.3% 0 - probably_damaging(0.955) deleterious(0) deleterious(0.843) NULL E2F5 1875 genome.wustl.edu 37 8 86118439 86118439 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001951.3 +1 reviewed p.I178 1.000 351 0.3% 270 41.1% 35 54.2% unknown(0) - - NULL RUNX1T1 862 genome.wustl.edu 37 8 93003989 93003989 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_175634.1 -1 reviewed p.P290H 1.000 617 0% 414 51.4% 0 - possibly_damaging(0.822) tolerated(0.38) neutral(0.329) NULL CDH17 1015 genome.wustl.edu 37 8 95182742 95182742 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144663.1 -1 reviewed p.G317R 0.010 155 0% 115 47.8% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PTDSS1 9791 genome.wustl.edu 37 8 97345750 97345750 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014754.1 +1 provisional p.R460W 1.000 170 0.6% 123 39% 72 52.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MATN2 4147 genome.wustl.edu 37 8 99039801 99039801 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002380.3 +1 reviewed p.S700 1.000 127 0.8% 100 14% 8 37.5% - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like UBR5 51366 genome.wustl.edu 37 8 103326031 103326031 + Splice_Site SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015902.4 -1 reviewed e16+1 1.000 209 0% 146 47.9% 1 100% - - - - UBR5 51366 genome.wustl.edu 37 8 103373430 103373430 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015902.4 -1 reviewed p.P38T 1.000 157 0% 93 45.2% 12 33.3% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL RIMS2 9699 genome.wustl.edu 37 8 104924285 104924285 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001100117.1 +1 validated p.P566H 1.000 146 0% 132 46.2% 0 - probably_damaging(0.992) deleterious(0) deleterious(0.892) superfamily_PDZ domain-like RAD21 5885 genome.wustl.edu 37 8 117859852 117859852 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006265.2 -1 reviewed p.A595T 1.000 233 0% 177 49.7% 130 37.6% probably_damaging(0.99) tolerated(0.15) deleterious(0.682) HMMPfam_Rad21_Rec8 COL14A1 7373 genome.wustl.edu 37 8 121220601 121220601 + Splice_Site SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021110.1 +1 validated e10+1 1.000 163 0% 124 41.9% 0 - - - - - WDYHV1 55093 genome.wustl.edu 37 8 124440226 124440226 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018024.1 +1 provisional p.E49V 1.000 215 0% 124 47.6% 12 50% probably_damaging(0.999) tolerated(0.08) deleterious(0.790) HMMPfam_WDYHV ADCY8 114 genome.wustl.edu 37 8 131880138 131880138 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001115.2 -1 reviewed p.V722I 1.000 189 0% 142 48.6% 0 - benign(0.063) tolerated(0.62) neutral(0.008) NULL KCNQ3 3786 genome.wustl.edu 37 8 133152342 133152342 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004519.2 -1 reviewed p.A517T 0.987 88 0% 46 37% 0 - benign(0.002) tolerated(1) - HMMPfam_KCNQ_channel TG 7038 genome.wustl.edu 37 8 133980200 133980200 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003235.4 +1 reviewed p.L1950 0.570 113 0% 91 39.6% 0 - - - - NULL NDRG1 10397 genome.wustl.edu 37 8 134274294 134274294 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135242.1 -1 reviewed p.A108T 0.002 80 0% 51 31.4% 77 36.3% benign(0) tolerated(0.62) neutral(0.004) HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases SLC45A4 57210 genome.wustl.edu 37 8 142228405 142228405 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080431.1 -1 provisional p.A394V 1.000 20 0% 14 50% 11 72.7% possibly_damaging(0.916) deleterious(0.01) deleterious(0.772) HMMPfam_MFS_1,superfamily_MFS general substrate transporter GML 2765 genome.wustl.edu 37 8 143921919 143921919 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002066.2 +1 validated p.R22 0.000 164 0% 111 44.1% 0 - - - - NULL ZNF696 79943 genome.wustl.edu 37 8 144378625 144378625 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030895.2 +1 validated p.H260 0.046 39 0% 16 75% 5 80% - - - PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667 TOP1MT 116447 genome.wustl.edu 37 8 144397939 144397939 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052963.1 -1 reviewed p.A504V 0.975 100 0% 62 37.1% 45 46.6% possibly_damaging(0.835) tolerated(0.21) neutral(0.362) superfamily_Topismrse_insert,superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,HMMPfam_Topoisom_I ZC3H3 23144 genome.wustl.edu 37 8 144523150 144523150 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015117.2 -1 validated p.S816 0.001 13 0% 10 60% 19 68.4% - - - NULL PLEC 5339 genome.wustl.edu 37 8 144991319 144991319 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_201380.2 -1 reviewed p.A4361T 0.986 51 0% 31 48.4% 400 45.2% probably_damaging(0.974) - - superfamily_Plakin repeat PARP10 84875 genome.wustl.edu 37 8 145057153 145057153 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032789.3 -1 validated p.R835W 0.005 31 0% 23 39.1% 53 58.4% probably_damaging(0.977) deleterious(0) deleterious(0.863) HMMPfam_PARP,superfamily_SSF56399 KIFC2 90990 genome.wustl.edu 37 8 145697603 145697603 + Splice_Site SNP T T G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000301331 +1 known e8+2 0.999 55 1.8% 28 14.3% 14 7.1% - - - - KANK1 23189 genome.wustl.edu 37 9 712209 712209 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015158.2 +1 reviewed p.H481 0.880 137 0% 91 45.1% 0 - - - - superfamily_ANK KANK1 23189 genome.wustl.edu 37 9 732477 732477 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015158.2 +1 reviewed p.E1035 1.000 145 0% 109 48.6% 1 100% - - - superfamily_ANK JAK2 3717 genome.wustl.edu 37 9 5072537 5072537 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004972.3 +1 reviewed p.V563I 0.002 138 0% 115 39.1% 4 25% benign(0) tolerated(0.61) neutral(0.004) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,superfamily_SSF55550 ADAMTSL1 92949 genome.wustl.edu 37 9 18675894 18675894 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000276935 +1 known p.I163T 1.000 359 0% 265 28.3% 0 - - - - superfamily_TSP-1 type 1 repeat RRAGA 10670 genome.wustl.edu 37 9 19049840 19049840 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006570.4 +1 validated p.W61C 1.000 50 0% 37 59.5% 58 5.1% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases MTAP 4507 genome.wustl.edu 37 9 21854712 21854712 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002451.3 +1 reviewed p.S178N 1.000 79 0% 49 57.1% 52 48% probably_damaging(0.957) deleterious(0) deleterious(0.845) HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases ACO1 48 genome.wustl.edu 37 9 32418179 32418179 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002197.2 +1 reviewed p.R153Q 1.000 175 0% 131 49.6% 15 53.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain CHMP5 51510 genome.wustl.edu 37 9 33276512 33276512 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016410.4 +1 validated p.L149P 1.000 290 0% 214 10.7% 136 10.2% benign(0.016) deleterious(0.03) neutral(0.365) HMMPfam_Snf7 NFX1 4799 genome.wustl.edu 37 9 33303215 33303215 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002504.3 +1 reviewed p.A407T 1.000 400 0% 277 44.4% 32 46.8% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_PHD_1,superfamily_RING/U-box FAM219A 203259 genome.wustl.edu 37 9 34402331 34402331 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000434789 -1 known p.T133I 0.408 126 0% 76 56.6% 0 - unknown(0) - - NULL RUSC2 9853 genome.wustl.edu 37 9 35555066 35555066 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135999.1 +1 validated p.T675I 0.979 63 0% 52 46.2% 0 - benign(0.022) deleterious(0.02) neutral(0.384) NULL TLN1 7094 genome.wustl.edu 37 9 35714252 35714252 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006289.3 -1 reviewed p.R1035Q 1.000 67 0% 55 16.4% 53 16.9% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) superfamily_SSF109885 GNE 10020 genome.wustl.edu 37 9 36219880 36219880 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128227.1 -1 reviewed p.A622T 1.000 213 0% 153 43.1% 0 - benign(0.358) deleterious(0) deleterious(0.558) HMMPfam_ROK,superfamily_SSF53067 RNF38 152006 genome.wustl.edu 37 9 36376031 36376031 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022781.4 -1 reviewed p.P86S 1.000 489 0% 383 42.8% 14 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PAX5 5079 genome.wustl.edu 37 9 36966527 36966527 + Splice_Site SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000377849 -1 known e7-2 0.003 116 0% 80 42.5% 0 - - - - - GRHPR 9380 genome.wustl.edu 37 9 37424938 37424938 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012203.1 +1 reviewed p.S60 0.048 53 0% 23 34.8% 148 45.2% - - - HMMPfam_2-Hacid_dh,superfamily_Formate/glycerate dehydrogenase catalytic domain-like FRMPD1 22844 genome.wustl.edu 37 9 37729769 37729769 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014907.2 +1 validated p.I219 0.598 90 0% 68 39.7% 3 33.3% - - - HMMSmart_B41 SHB 6461 genome.wustl.edu 37 9 37919912 37919912 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003028.2 -1 validated p.P479L 1.000 296 0% 183 48.1% 16 62.5% possibly_damaging(0.559) tolerated(0.07) deleterious(0.510) HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain ANKRD18A 253650 genome.wustl.edu 37 9 38577872 38577872 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000399703 -1 known p.H841Y 0.513 26 0% 14 57.1% 0 - probably_damaging(0.962) deleterious(0.02) deleterious(0.788) NULL APBA1 320 genome.wustl.edu 37 9 72131801 72131801 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001163.3 -1 reviewed p.A109V 0.020 14 0% 13 53.8% 0 - benign(0) tolerated(1) - NULL TRPM3 80036 genome.wustl.edu 37 9 73164504 73164504 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007471.2 -1 reviewed p.R1209W 0.957 269 0% 192 45.3% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL TRPM3 80036 genome.wustl.edu 37 9 73233887 73233887 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007471.2 -1 reviewed p.V740M 1.000 72 0% 56 55.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TMEM2 23670 genome.wustl.edu 37 9 74332877 74332877 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013390.2 -1 validated p.V796I 0.960 230 0% 179 49.2% 18 61.1% benign(0) tolerated(0.43) neutral(0.013) superfamily_Pectin lyase-like ANXA1 301 genome.wustl.edu 37 9 75775279 75775279 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000700.1 +1 reviewed p.R124H 0.041 127 0% 113 26.5% 1139 23% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) superfamily_Annexin,HMMPfam_Annexin RORB 6096 genome.wustl.edu 37 9 77257359 77257359 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006914.3 +1 reviewed p.Q89* 1.000 99 0% 58 53.4% 0 - - - - superfamily_Glucocorticoid receptor-like (DNA-binding domain) PCSK5 5125 genome.wustl.edu 37 9 78803534 78803534 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006200.3 +1 reviewed p.R775W 0.045 104 0% 88 13.6% 2 0% benign(0.001) deleterious(0.02) neutral(0.383) HMMSmart_SM00261,superfamily_Growth factor receptor domain FOXB2 442425 genome.wustl.edu 37 9 79634636 79634636 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001013735.1 +1 provisional p.T22 0.997 45 0% 38 34.2% 0 - - - - HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,superfamily_SSF46785 VPS13A 23230 genome.wustl.edu 37 9 79829247 79829247 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033305.2 +1 reviewed p.D233 0.000 163 0% 141 35.5% 3 33.3% - - - NULL PSAT1 29968 genome.wustl.edu 37 9 80916876 80916876 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_058179.2 +1 reviewed p.S43N 1.000 459 0% 386 45.3% 47 63.8% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases AGTPBP1 23287 genome.wustl.edu 37 9 88270211 88270211 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000376081 -1 known p.W229* 1.000 80 0% 82 23.2% 5 40% - - - superfamily_ARM-type_fold NAA35 60560 genome.wustl.edu 37 9 88576932 88576932 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024635.3 +1 validated p.T118M 1.000 165 0% 124 37.9% 19 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Mak10 SYK 6850 genome.wustl.edu 37 9 93636536 93636536 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003177.5 +1 reviewed p.P322 0.397 193 0% 151 48.3% 34 44.1% - - - NULL SYK 6850 genome.wustl.edu 37 9 93657854 93657854 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003177.5 +1 reviewed p.R627H 1.000 96 0% 51 45.1% 46 65.2% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMSmart_SM00220 NFIL3 4783 genome.wustl.edu 37 9 94172745 94172745 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005384.2 -1 validated p.R91H 0.875 278 0% 233 44.6% 19 36.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2 ROR2 4920 genome.wustl.edu 37 9 94493204 94493204 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004560.2 -1 reviewed p.V391I 0.976 56 0% 44 52.3% 5 60% benign(0) tolerated(1) - HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like C9orf129 445577 genome.wustl.edu 37 9 96097784 96097784 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098808.1 -1 provisional p.L79 1.000 246 0% 170 44.1% 2 0% - - - NULL FAM120A 23196 genome.wustl.edu 37 9 96320198 96320198 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014612.3 +1 validated p.P858 0.405 65 0% 45 20% 160 11.8% - - - NULL HSD17B3 3293 genome.wustl.edu 37 9 99003166 99003166 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000197.1 -1 reviewed p.S232 0.000 256 0% 200 47.5% 3 0% - - - superfamily_NAD(P)-binding Rossmann-fold domains C9orf174 100499483 genome.wustl.edu 37 9 100124122 100124122 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020893.1 +1 predicted p.R1215C 1.000 102 0% 65 52.3% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TSTD2 158427 genome.wustl.edu 37 9 100367864 100367864 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_139246.4 -1 validated p.Y338 0.991 150 0% 102 32.4% 10 30% - - - HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase ANKS6 203286 genome.wustl.edu 37 9 101546320 101546320 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173551.3 -1 provisional p.Q343* 1.000 69 0% 54 51.9% 17 41.1% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat GRIN3A 116443 genome.wustl.edu 37 9 104432714 104432714 + Silent SNP T T G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_133445.2 -1 reviewed p.R660 1.000 63 0% 61 45.9% 0 - - - - HMMSmart_PBPe,superfamily_SSF53850 OR13C3 138803 genome.wustl.edu 37 9 107298632 107298632 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001961.1 -1 provisional p.A155T 1.000 216 0% 154 48.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 SLC44A1 23446 genome.wustl.edu 37 9 108110729 108110729 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080546.3 +1 validated p.A166V 1.000 270 0% 215 45.6% 46 58.6% benign(0.011) tolerated(0.13) neutral(0.253) NULL KLF4 9314 genome.wustl.edu 37 9 110251328 110251328 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004235.4 -1 validated p.Q3 1.000 36 0% 21 42.9% 18 66.6% - - - NULL ACTL7B 10880 genome.wustl.edu 37 9 111617774 111617774 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006686.3 -1 reviewed p.A146V 0.998 28 0% 11 36.4% 0 - possibly_damaging(0.643) deleterious(0) deleterious(0.670) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain IKBKAP 8518 genome.wustl.edu 37 9 111641821 111641821 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003640.3 -1 reviewed p.H1159 0.001 131 1.5% 114 41.2% 31 38.7% - - - NULL PTPN3 5774 genome.wustl.edu 37 9 112143964 112143964 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002829.3 -1 reviewed p.R878* 1.000 264 0% 183 39.3% 18 44.4% - - - HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 PALM2-AKAP2 445815 genome.wustl.edu 37 9 112918708 112918708 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007203.4 +1 validated p.L1035 1.000 143 0% 114 50.9% 3 0% - - - NULL LPAR1 1902 genome.wustl.edu 37 9 113703894 113703894 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001401.3 -1 reviewed p.P200 0.994 225 0% 174 14.4% 16 12.5% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like KIF12 113220 genome.wustl.edu 37 9 116858707 116858707 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138424.1 -1 provisional p.R95Q 1.000 292 0% 212 49.1% 16 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540 COL27A1 85301 genome.wustl.edu 37 9 117044776 117044776 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032888.2 +1 validated p.V1271I 0.986 105 0% 88 31.8% 4 50% unknown(0) tolerated(0.54) - HMMPfam_Collagen COL27A1 85301 genome.wustl.edu 37 9 117071681 117071681 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032888.2 +1 validated p.R1787C 1.000 67 0% 54 40.7% 11 9% probably_damaging(1) tolerated(0.18) deleterious(0.556) HMMPfam_COLFI,HMMSmart_SM00038 TRIM32 22954 genome.wustl.edu 37 9 119460193 119460193 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099679.1 +1 reviewed p.G58C 1.000 141 0% 94 52.1% 13 38.4% probably_damaging(0.998) tolerated(0.08) deleterious(0.774) HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850 FBXW2 26190 genome.wustl.edu 37 9 123526843 123526843 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012164.3 -1 reviewed p.H453 0.996 125 0% 92 39.1% 41 41.4% - - - NULL CNTRL 11064 genome.wustl.edu 37 9 123919844 123919844 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007018.4 +1 reviewed p.A1488T 0.968 196 0% 173 52% 10 40% benign(0.1) tolerated(0.75) neutral(0.009) NULL CRB2 286204 genome.wustl.edu 37 9 126133465 126133465 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173689.5 +1 validated p.A682T 0.000 72 0% 47 46.8% 0 - possibly_damaging(0.876) tolerated(0.21) neutral(0.385) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 DENND1A 57706 genome.wustl.edu 37 9 126144711 126144711 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020946.1 -1 validated p.R677Q 0.000 45 0% 32 18.8% 11 9% benign(0.014) tolerated(0.97) neutral(0.001) NULL PBX3 5090 genome.wustl.edu 37 9 128725337 128725337 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006195.5 +1 validated p.D390G 1.000 286 0% 202 23.8% 0 - - - - NULL ZBTB34 403341 genome.wustl.edu 37 9 129642962 129642962 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099270.1 +1 validated p.D424 0.998 173 0% 108 14.8% 5 20% - - - superfamily_C2H2 and C2HC zinc fingers LRSAM1 90678 genome.wustl.edu 37 9 130223491 130223491 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005373.1 +1 validated p.R121C 0.327 115 0% 77 41.6% 28 50% possibly_damaging(0.896) deleterious(0.05) deleterious(0.699) HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like NAIF1 203245 genome.wustl.edu 37 9 130826012 130826012 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_197956.3 -1 validated p.A227T 1.000 180 0% 108 41.7% 21 52.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PTGES2 80142 genome.wustl.edu 37 9 130886024 130886024 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025072.5 -1 reviewed p.E215K 0.998 164 0% 96 46.9% 179 54.1% benign(0.278) tolerated(0.31) neutral(0.057) NULL SPTAN1 6709 genome.wustl.edu 37 9 131344985 131344985 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130438.1 +1 validated p.R555C 1.000 194 0% 125 48.8% 43 51.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin SPTAN1 6709 genome.wustl.edu 37 9 131395575 131395575 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130438.1 +1 validated p.D2466N 1.000 74 1.4% 55 20% 372 24.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_efhand_Ca_insen,superfamily_SSF47473 PKN3 29941 genome.wustl.edu 37 9 131476567 131476567 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013355.3 +1 validated p.P468 0.868 74 0% 52 40.4% 6 33.3% - - - NULL PKN3 29941 genome.wustl.edu 37 9 131479176 131479176 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013355.3 +1 validated p.E653D 0.998 212 0% 163 48.5% 5 60% benign(0.01) tolerated(0.74) neutral(0.002) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ZER1 10444 genome.wustl.edu 37 9 131497624 131497624 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006336.2 -1 provisional p.V710A 1.000 223 0% 139 43.9% 46 41.3% possibly_damaging(0.94) deleterious(0.04) deleterious(0.734) superfamily_ARM-type_fold ZER1 10444 genome.wustl.edu 37 9 131517694 131517694 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006336.2 -1 provisional p.V51I 1.000 99 0% 60 45% 42 33.3% possibly_damaging(0.583) tolerated(0.14) neutral(0.450) NULL FUBP3 8939 genome.wustl.edu 37 9 133506104 133506104 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003934.1 +1 validated p.R403W 1.000 65 0% 48 52.1% 82 41.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) LAMC3 10319 genome.wustl.edu 37 9 133945221 133945221 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006059.3 +1 reviewed p.A1018V 0.004 18 0% 13 38.5% 8 0% benign(0.134) tolerated(0.24) neutral(0.049) NULL LAMC3 10319 genome.wustl.edu 37 9 133952640 133952640 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006059.3 +1 reviewed p.A1232 0.001 49 0% 33 60.6% 18 22.2% - - - NULL FAM78A 286336 genome.wustl.edu 37 9 134151420 134151420 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033387.3 -1 validated p.P49 1.000 94 0% 62 32.3% 1 0% - - - NULL SETX 23064 genome.wustl.edu 37 9 135202738 135202738 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015046.5 -1 reviewed p.C1416Y 0.000 474 0% 351 49.9% 15 53.3% benign(0.267) deleterious(0) deleterious(0.473) NULL TTF1 7270 genome.wustl.edu 37 9 135276897 135276897 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007344.2 -1 validated p.R438* 0.001 271 0% 258 46.9% 8 0% - - - NULL OBP2B 29989 genome.wustl.edu 37 9 136083954 136083954 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014581.2 -1 validated p.V36 0.000 193 0% 125 39.2% 0 - - - - HMMPfam_Lipocalin,superfamily_Lipocalins REXO4 57109 genome.wustl.edu 37 9 136279834 136279834 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020385.2 -1 validated p.E175K 0.002 382 0% 290 42.8% 44 43.1% benign(0) tolerated(0.69) neutral(0.002) NULL ADAMTS13 11093 genome.wustl.edu 37 9 136323210 136323210 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_139025.3 +1 reviewed p.Y1357 0.451 80 0% 46 45.7% 8 62.5% - - - superfamily_Spermadhesin CUB domain SARDH 1757 genome.wustl.edu 37 9 136568115 136568115 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134707.1 -1 reviewed p.R531C 0.000 32 0% 25 44% 1 0% possibly_damaging(0.643) deleterious(0.05) deleterious(0.571) superfamily_SSF103025 VAV2 7410 genome.wustl.edu 37 9 136643935 136643935 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134398.1 -1 reviewed p.T613 0.840 68 0% 41 41.5% 31 45.1% - - - HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 RXRA 6256 genome.wustl.edu 37 9 137321072 137321072 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002957.4 +1 reviewed p.G343 0.998 32 0% 15 46.7% 27 0% - - - HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain PPP1R26 9858 genome.wustl.edu 37 9 138376468 138376468 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014811.3 +1 validated p.V38M 0.000 38 0% 19 47.4% 24 54.1% possibly_damaging(0.525) tolerated(0.08) deleterious(0.477) NULL ABCA2 20 genome.wustl.edu 37 9 139911708 139911708 + Silent SNP G G A rs143432283 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000479446 -1 known p.T181M 0.806 38 0% 30 40% 46 36.9% - - - NULL FAM166A 401565 genome.wustl.edu 37 9 140139876 140139876 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001710.1 -1 predicted p.P135 0.017 229 0% 149 43.6% 0 - - - - NULL COBRA1 25920 genome.wustl.edu 37 9 140166607 140166607 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015456.3 +1 validated p.D474N 0.993 128 0% 112 48.2% 126 54.7% possibly_damaging(0.767) deleterious(0.01) deleterious(0.690) HMMPfam_COBRA1 PNPLA7 375775 genome.wustl.edu 37 9 140357285 140357285 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098537.1 -1 validated p.A1115V 1.000 101 0% 83 47% 4 50% probably_damaging(1) tolerated(0.62) deleterious(0.504) HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like CACNA1B 774 genome.wustl.edu 37 9 140991061 140991061 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000413253 +1 known p.V105M 0.988 281 0% 189 46.6% 0 - - - - NULL ADARB2 105 genome.wustl.edu 37 10 1406015 1406015 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018702.2 -1 reviewed p.G95 0.028 11 0.000 7 0.571 0 - - - - NULL ITIH2 3698 genome.wustl.edu 37 10 7774308 7774308 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002216.2 +1 validated p.T552M 0.831 147 0% 98 46.9% 0 - benign(0.038) tolerated(0.14) neutral(0.252) NULL DHTKD1 55526 genome.wustl.edu 37 10 12131229 12131229 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018706.5 +1 validated p.P321L 1.000 77 0% 55 43.6% 16 37.5% benign(0.01) tolerated(0.77) neutral(0.002) HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding) SEPHS1 22929 genome.wustl.edu 37 10 13371764 13371764 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012247.3 -1 reviewed p.D195 0.965 164 0% 110 46.4% 109 47.7% - - - HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like FAM171A1 221061 genome.wustl.edu 37 10 15255016 15255016 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001010924.1 -1 validated p.H857 0.000 216 0% 164 43.3% 34 58.8% - - - HMMPfam_UPF0560 C10orf140 387640 genome.wustl.edu 37 10 21805750 21805750 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207371.3 -1 validated p.P334 1.000 10 0% 11 54.5% 0 - - - - NULL KIAA1217 56243 genome.wustl.edu 37 10 24508641 24508641 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019590.3 +1 validated p.R53C 0.370 108 0% 64 46.9% 7 42.8% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL MYO3A 53904 genome.wustl.edu 37 10 26286168 26286168 + Silent SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017433.4 +1 reviewed p.G163 1.000 140 0% 91 53.8% 0 - - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase ARHGAP12 94134 genome.wustl.edu 37 10 32197565 32197565 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018287.5 -1 provisional p.T73 0.007 292 0% 213 25.8% 10 50% - - - HMMSmart_SM00326,superfamily_SH3-domain ZNF25 219749 genome.wustl.edu 37 10 38241416 38241416 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145011.2 -1 provisional p.T337I 1.000 191 0% 136 24.3% 2 0% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) superfamily_C2H2 and C2HC zinc fingers ZNF22 7570 genome.wustl.edu 37 10 45499134 45499134 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006963.4 +1 validated p.T106 0.011 141 0% 126 49.2% 21 38% - - - superfamily_C2H2 and C2HC zinc fingers RBP3 5949 genome.wustl.edu 37 10 48390467 48390467 + Silent SNP G G A rs184452710 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002900.2 -1 reviewed p.S137 0.693 69 0% 45 51.1% 0 - - - - HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase ARHGAP22 58504 genome.wustl.edu 37 10 49687663 49687663 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000417912 -1 known p.S156L 0.999 33 0% 17 41.2% 0 - possibly_damaging(0.767) - - NULL PARG 8505 genome.wustl.edu 37 10 51087830 51087830 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003631.2 -1 reviewed p.S626L 1.000 408 0% 324 9.3% 12 0% probably_damaging(0.977) deleterious(0) deleterious(0.863) HMMPfam_PARG_cat ZWINT 11130 genome.wustl.edu 37 10 58119846 58119846 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007057.3 -1 reviewed p.L63 0.980 46 0% 34 35.3% 57 50.8% - - - NULL ANK3 288 genome.wustl.edu 37 10 61828706 61828706 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020987.2 -1 reviewed p.T3978S 0.999 264 0% 182 47.8% 0 - benign(0) - - NULL MYPN 84665 genome.wustl.edu 37 10 69955232 69955232 + Nonsense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032578.2 +1 validated p.L1034* 1.000 135 0% 102 21.6% 0 - - - - HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin SLC29A3 55315 genome.wustl.edu 37 10 73121833 73121833 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000373189 +1 known p.R299H 0.021 151 0% 108 44.4% 3 33.3% possibly_damaging(0.93) tolerated(0.54) neutral(0.384) HMMPfam_Nucleoside_tran SLC29A3 55315 genome.wustl.edu 37 10 73122211 73122211 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000373189 +1 known p.S425N 1.000 63 0% 42 33.3% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nucleoside_tran CDH23 64072 genome.wustl.edu 37 10 73337743 73337743 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022124.5 +1 reviewed p.V276I 0.996 128 0% 95 47.4% 0 - benign(0.156) tolerated(0.38) neutral(0.032) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73569705 73569705 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022124.5 +1 reviewed p.L2951M 1.000 67 0% 38 13.2% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_Cadherin-like CDH23 64072 genome.wustl.edu 37 10 73571145 73571145 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022124.5 +1 reviewed p.Q3051* 1.000 83 0% 62 41.9% 0 - - - - NULL PLA2G12B 84647 genome.wustl.edu 37 10 74714386 74714386 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032562.2 -1 validated p.Q20* 0.257 61 0% 42 59.5% 0 - - - - HMMPfam_PLA2G12 MSS51 118490 genome.wustl.edu 37 10 75184361 75184361 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001024593.1 -1 validated p.C445R 0.053 374 0% 283 42.4% 1 100% possibly_damaging(0.55) tolerated(0.14) neutral(0.436) NULL SEC24C 9632 genome.wustl.edu 37 10 75529404 75529404 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004922.2 +1 reviewed p.K865N 1.000 168 0% 100 44% 128 46.8% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24 DUSP13 51207 genome.wustl.edu 37 10 76865549 76865549 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007271.1 -1 reviewed p.R149W 0.014 30 0% 19 47.4% 0 - possibly_damaging(0.862) deleterious(0.01) deleterious(0.739) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 ZNF503 84858 genome.wustl.edu 37 10 77159047 77159047 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032772.4 -1 validated p.P467 0.033 24 0% 11 45.5% 102 50% - - - NULL KCNMA1 3778 genome.wustl.edu 37 10 78651292 78651292 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000372403 -1 known p.R1004Q 0.006 58 0% 46 41.3% 0 - - - - NULL GRID1 2894 genome.wustl.edu 37 10 87966252 87966252 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017551.2 -1 reviewed p.L130P 1.000 102 0% 95 33.7% 0 - benign(0.01) tolerated(0.15) neutral(0.241) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I MARCH5 54708 genome.wustl.edu 37 10 94071050 94071050 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017824.4 +1 validated p.C65Y 1.000 169 0% 105 51.4% 69 47.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00744,HMMPfam_zf-C3HC4 PDE6C 5146 genome.wustl.edu 37 10 95381757 95381757 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006204.3 +1 reviewed p.A264 0.000 306 0% 250 49.2% 0 - - - - HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781 FRA10AC1 118924 genome.wustl.edu 37 10 95447190 95447190 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145246.4 -1 reviewed p.R161Q 1.000 57 0% 56 30.4% 17 23.5% probably_damaging(0.992) deleterious(0.01) deleterious(0.853) HMMPfam_Fra10Ac1 TBC1D12 23232 genome.wustl.edu 37 10 96269905 96269905 + Missense_Mutation SNP G G A rs189620911 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015188.1 +1 validated p.R553H 1.000 301 0% 225 41.8% 10 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC ALDH18A1 5832 genome.wustl.edu 37 10 97369966 97369966 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002860.3 -1 reviewed p.R732C 1.000 128 0% 91 42.9% 166 46.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ALDH-like TCTN3 26123 genome.wustl.edu 37 10 97440280 97440280 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015631.5 -1 validated p.P513 0.982 198 0% 148 49.3% 74 45.9% - - - NULL SLIT1 6585 genome.wustl.edu 37 10 98802763 98802763 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003061.2 -1 validated p.R687W 0.997 82 0% 46 43.5% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00082,superfamily_L domain-like ANKRD2 26287 genome.wustl.edu 37 10 99338110 99338110 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020349.2 +1 validated p.D128 0.926 25 0% 30 36.7% 0 - - - - superfamily_Ankyrin repeat C10orf62 414157 genome.wustl.edu 37 10 99349900 99349900 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001009997.2 +1 validated p.H82 0.000 58 0% 47 46.8% 0 - - - - NULL DNMBP 23268 genome.wustl.edu 37 10 101657918 101657918 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015221.2 -1 validated p.P949T 0.999 357 0% 224 40.2% 2 50% probably_damaging(0.976) tolerated(0.42) neutral(0.432) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) CWF19L1 55280 genome.wustl.edu 37 10 102019994 102019994 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018294.4 -1 validated p.A90 0.990 268 0% 190 41.6% 21 61.9% - - - NULL FAM178A 55719 genome.wustl.edu 37 10 102716272 102716272 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136123.1 +1 validated p.A1132V 1.000 341 0% 238 10.9% 19 15.7% possibly_damaging(0.636) deleterious(0.03) deleterious(0.587) NULL MGEA5 10724 genome.wustl.edu 37 10 103559087 103559087 + Nonsense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012215.3 -1 validated p.G441* 1.000 346 0% 296 45.9% 44 18.1% - - - NULL NFKB2 4791 genome.wustl.edu 37 10 104160960 104160960 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001077494.1 +1 validated p.E699K 1.000 174 0% 150 50.7% 39 48.7% probably_damaging(0.98) tolerated(0.24) neutral(0.461) HMMPfam_Ank,superfamily_Ankyrin repeat PSD 5662 genome.wustl.edu 37 10 104164743 104164743 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002779.3 -1 provisional p.L823M 0.962 78 0% 46 21.7% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like PDCD11 22984 genome.wustl.edu 37 10 105194617 105194617 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014976.1 +1 validated p.E1244K 0.001 67 0% 49 38.8% 37 51.3% benign(0) tolerated(0.92) - superfamily_Nucleic_acid_OB,HMMSmart_S1 COL17A1 1308 genome.wustl.edu 37 10 105812833 105812833 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000494.3 -1 reviewed p.R632H 0.935 126 0% 83 37.3% 0 - unknown(0) deleterious(0.04) - NULL COL17A1 1308 genome.wustl.edu 37 10 105812855 105812855 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000494.3 -1 reviewed p.R625* 0.992 88 0% 62 48.4% 0 - - - - HMMPfam_Collagen WDR96 80217 genome.wustl.edu 37 10 105922111 105922111 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000434629 -1 known p.S460L 0.000 251 0% 221 52.9% 0 - - - - NULL SORCS1 114815 genome.wustl.edu 37 10 108447997 108447997 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001013031.1 -1 reviewed p.Q505* 1.000 145 0% 92 38% 0 - - - - HMMSmart_VPS10,superfamily_SSF110296 NHLRC2 374354 genome.wustl.edu 37 10 115662298 115662298 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198514.2 +1 provisional p.V480 0.324 181 0% 114 14% 11 36.3% - - - HMMPfam_NHL,superfamily_NHL repeat WDR11 55717 genome.wustl.edu 37 10 122619655 122619655 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018117.11 +1 reviewed p.R129 0.669 302 0% 230 45.2% 37 45.9% - - - HMMSmart_WD40,superfamily_WD40_like TACC2 10579 genome.wustl.edu 37 10 123842396 123842396 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000491540 +1 known p.G141S 0.000 39 2.6% 25 36% 2 0% - - - NULL OAT 4942 genome.wustl.edu 37 10 126090306 126090306 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000274.3 -1 reviewed p.A335T 0.996 82 1.2% 50 56% 19 42.1% benign(0.002) tolerated(0.13) neutral(0.253) HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major C10orf137 26098 genome.wustl.edu 37 10 127452006 127452006 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015608.2 +1 validated p.A1194T 0.000 90 0% 71 56.3% 10 60% unknown(0) tolerated(0.63) - NULL DOCK1 1793 genome.wustl.edu 37 10 129217983 129217983 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000398025 +1 known p.I1627 0.420 116 0% 108 46.3% 23 21.7% - - - superfamily_Cytochrome_c DOCK1 1793 genome.wustl.edu 37 10 129245729 129245729 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000398025 +1 known p.V1874M 0.989 100 0% 67 23.9% 33 21.2% benign(0) tolerated(0.2) neutral(0.049) NULL PWWP2B 170394 genome.wustl.edu 37 10 134219444 134219444 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138499.3 +1 validated p.C480 0.995 123 0% 78 23.1% 51 29.4% - - - superfamily_SSF63748 NKX6-2 84504 genome.wustl.edu 37 10 134598638 134598638 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_177400.2 -1 validated p.R206W 1.000 82 0% 41 43.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_HOX,superfamily_Homeodomain_like MTG1 92170 genome.wustl.edu 37 10 135215055 135215055 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138384.2 +1 validated p.G178 0.933 148 0% 97 53.6% 27 11.1% - - - HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases ATHL1 80162 genome.wustl.edu 37 11 292048 292048 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025092.4 +1 validated p.R327C 0.709 47 0% 46 58.7% 40 10% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases ATHL1 80162 genome.wustl.edu 37 11 294187 294187 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025092.4 +1 validated p.T600M 0.964 113 0% 74 41.9% 30 16.6% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases HRAS 3265 genome.wustl.edu 37 11 533881 533881 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130442.1 -1 reviewed p.A59T 0.997 69 0% 46 56.5% 119 49.5% benign(0.153) deleterious(0.01) neutral(0.419) HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases PHRF1 57661 genome.wustl.edu 37 11 607498 607498 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020901.2 +1 validated p.R680M 1.000 51 0% 36 41.7% 33 54.5% possibly_damaging(0.649) deleterious(0) deleterious(0.672) NULL MUC6 4588 genome.wustl.edu 37 11 1026400 1026400 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005961.2 -1 validated p.E825K 0.757 45 0% 40 40% 0 - unknown(0) deleterious(0.03) - superfamily_Serine proterase inhibitors MUC2 4583 genome.wustl.edu 37 11 1102462 1102462 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002457.2 +1 reviewed p.E2612K 0.011 99 0% 60 48.3% 6 33.3% unknown(0) - - HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1 MUC5B 727897 genome.wustl.edu 37 11 1268289 1268289 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002458.1 +1 validated p.T3396 0.000 808 0% 578 39.1% 34 50% - - - NULL CTSD 1509 genome.wustl.edu 37 11 1775240 1775240 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001909.3 -1 reviewed p.P319L 0.998 29 0% 12 50% 651 45.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Asp,superfamily_Pept_Aspartic TRPM5 29850 genome.wustl.edu 37 11 2432667 2432667 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014555.3 -1 validated p.D899 0.975 18 0% 19 36.8% 0 - - - - HMMPfam_Ion_trans SLC22A18 5002 genome.wustl.edu 37 11 2946347 2946347 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_183233.2 +1 reviewed p.V399M 0.779 39 0% 29 41.4% 18 72.2% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) superfamily_MFS_gen_substrate_transporter PHLDA2 7262 genome.wustl.edu 37 11 2950345 2950345 + Missense_Mutation SNP A A C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003311.3 -1 reviewed p.C84G 1.000 33 0% 25 28% 27 14.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 MRGPRG 386746 genome.wustl.edu 37 11 3239726 3239726 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000332314 -1 known p.S106 0.000 16 0% 11 36.4% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 ART1 417 genome.wustl.edu 37 11 3681250 3681250 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004314.2 +1 reviewed p.S167 0.000 28 0% 24 45.8% 0 - - - - HMMPfam_ART,superfamily_SSF56399 OR52K1 390036 genome.wustl.edu 37 11 4510858 4510858 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005171.2 +1 validated p.C243Y 0.976 609 0.2% 413 43.6% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR52I2 143502 genome.wustl.edu 37 11 4609001 4609001 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005170.2 +1 validated p.P320L 0.176 287 0.3% 224 41.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 OR51B4 79339 genome.wustl.edu 37 11 5322363 5322363 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033179.2 -1 validated p.T272A 0.381 144 0.7% 108 16.7% 0 - benign(0.052) deleterious(0) neutral(0.448) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR51B4 79339 genome.wustl.edu 37 11 5322899 5322899 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033179.2 -1 validated p.A93V 0.000 184 0% 133 51.9% 0 - benign(0) tolerated(0.09) neutral(0.296) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TRIM5 85363 genome.wustl.edu 37 11 5701053 5701053 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033034.2 -1 reviewed p.R119W 0.192 334 0% 269 46.5% 25 52% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-B_box,HMMSmart_SM00336 OR52N5 390075 genome.wustl.edu 37 11 5799344 5799344 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001922.2 -1 validated p.R174H 0.960 139 0% 106 94.3% 0 - benign(0.041) deleterious(0.02) neutral(0.386) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CCKBR 887 genome.wustl.edu 37 11 6291009 6291009 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176875.2 +1 reviewed p.V88I 0.996 134 0% 70 38.6% 0 - probably_damaging(0.958) tolerated(0.16) neutral(0.461) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PRKCDBP 112464 genome.wustl.edu 37 11 6340770 6340770 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145040.2 -1 reviewed p.A137T 0.992 5 0.000 10 0.600 18 38.8% probably_damaging(0.979) tolerated(0.21) neutral(0.466) NULL HPX 3263 genome.wustl.edu 37 11 6453232 6453232 + Missense_Mutation SNP C C T rs150117990 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000613.2 -1 reviewed p.R284H 1.000 67 0% 63 50.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX DNHD1 144132 genome.wustl.edu 37 11 6588164 6588164 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144666.2 +1 provisional p.R3809C 0.000 89 0% 59 44.1% 4 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL ILK 3611 genome.wustl.edu 37 11 6629701 6629701 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001014794.1 +1 reviewed p.G111 0.824 236 0% 125 41.6% 104 46.1% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK DCHS1 8642 genome.wustl.edu 37 11 6661587 6661587 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003737.2 -1 reviewed p.V420I 1.000 57 0% 48 52.1% 0 - benign(0.046) tolerated(0.9) neutral(0.003) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin OR2AG2 338755 genome.wustl.edu 37 11 6789245 6789245 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004490.1 -1 provisional p.T315M 0.001 210 0% 149 46.3% 0 - benign(0.08) deleterious(0.01) neutral(0.411) NULL INSC 387755 genome.wustl.edu 37 11 15260582 15260582 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001031853.3 +1 provisional p.R499Q 1.000 94 0% 77 53.2% 0 - possibly_damaging(0.914) tolerated(0.58) neutral(0.371) HMMSmart_SM00185,superfamily_ARM repeat KCNJ11 3767 genome.wustl.edu 37 11 17409396 17409396 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000525.3 -1 reviewed p.C81 1.000 96 0% 78 52.6% 1 100% - - - HMMPfam_IRK,superfamily_SSF81324 IGSF22 283284 genome.wustl.edu 37 11 18735548 18735548 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173588.3 -1 validated p.T649M 0.211 133 0% 72 50% 0 - probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726 PTPN5 84867 genome.wustl.edu 37 11 18762242 18762242 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006906.1 -1 validated p.R275C 0.994 66 0% 44 38.6% 0 - possibly_damaging(0.936) deleterious(0.01) deleterious(0.787) superfamily_(Phosphotyrosine protein) phosphatases II NAV2 89797 genome.wustl.edu 37 11 20114680 20114680 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182964.5 +1 validated p.R1954W 1.000 546 0% 372 49.7% 16 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL DBX1 120237 genome.wustl.edu 37 11 20177891 20177891 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001029865.1 -1 provisional p.R340W 0.979 22 0% 24 37.5% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) NULL METTL15 196074 genome.wustl.edu 37 11 28232709 28232709 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001113528.1 +1 validated p.A124V 0.993 234 0% 192 47.4% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Methyltransf_5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases WT1 7490 genome.wustl.edu 37 11 32413565 32413565 + Missense_Mutation SNP C C A rs121907903 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024426.3 -1 reviewed p.R462L 1.000 286 0% 189 49.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers EIF3M 10480 genome.wustl.edu 37 11 32605475 32605475 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006360.3 +1 provisional p.Q14H 1.000 62 0% 42 26.2% 178 11.7% probably_damaging(0.968) deleterious(0) deleterious(0.855) NULL NAT10 55226 genome.wustl.edu 37 11 34135344 34135344 + Missense_Mutation SNP C C T rs149812318 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024662.2 +1 validated p.R152W 0.719 261 0% 197 42.6% 42 35.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF1726 PDHX 8050 genome.wustl.edu 37 11 35016594 35016594 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003477.2 +1 reviewed p.L461 0.976 192 0% 145 51% 35 51.4% - - - HMMPfam_2-oxoacid_dh,superfamily_SSF52777 LDLRAD3 143458 genome.wustl.edu 37 11 36103272 36103272 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_174902.2 +1 provisional p.R88H 1.000 172 0% 97 51.5% 10 50% probably_damaging(0.953) tolerated(0.22) neutral(0.439) HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich TTC17 55761 genome.wustl.edu 37 11 43469611 43469611 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018259.5 +1 validated p.R909C 1.000 80 0% 58 51.7% 33 39.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF48452 MAPK8IP1 9479 genome.wustl.edu 37 11 45924221 45924221 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005456.2 +1 reviewed p.P301 0.090 14 0% 13 53.8% 91 48.3% - - - NULL DGKZ 8525 genome.wustl.edu 37 11 46397884 46397884 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001105540.1 +1 reviewed p.D888N 0.986 124 0% 111 38.7% 33 63.6% benign(0.268) tolerated(0.26) neutral(0.062) NULL CHRM4 1132 genome.wustl.edu 37 11 46407624 46407624 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000741.2 -1 reviewed p.V162M 0.988 185 0% 109 53.2% 0 - possibly_damaging(0.95) deleterious(0) deleterious(0.838) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ARHGAP1 392 genome.wustl.edu 37 11 46701781 46701781 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004308.2 -1 provisional p.R291Q 0.788 101 0% 67 10.4% 60 1.6% possibly_damaging(0.946) deleterious(0.03) deleterious(0.754) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP NUP160 23279 genome.wustl.edu 37 11 47800667 47800667 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015231.1 -1 validated p.R1434Q 1.000 231 0% 167 46.1% 83 45.7% unknown(0) - - NULL OR4X1 390113 genome.wustl.edu 37 11 48285974 48285974 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004726.1 +1 provisional p.A188T 0.022 279 0.4% 192 45.8% 0 - benign(0) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 OR4C16 219428 genome.wustl.edu 37 11 55339882 55339882 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004701.2 +1 validated p.S93 0.000 334 0% 278 46% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 SPRYD5 84767 genome.wustl.edu 37 11 55653151 55653151 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032681.3 +1 validated p.R83W 0.002 72 0% 40 52.5% 0 - benign(0.002) tolerated(0.19) neutral(0.050) superfamily_RING/U-box PRG3 10394 genome.wustl.edu 37 11 57147100 57147100 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006093.3 -1 validated p.S81L 0.015 150 0% 98 38.8% 0 - benign(0.012) deleterious(0.02) neutral(0.384) NULL CTNND1 1500 genome.wustl.edu 37 11 57583393 57583393 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001085458.1 +1 validated p.E939K 1.000 250 0% 194 48.5% 1 0% possibly_damaging(0.767) deleterious(0.01) deleterious(0.690) NULL ZFP91 80829 genome.wustl.edu 37 11 58378437 58378437 + Missense_Mutation SNP A A C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_053023.3 +1 reviewed p.E211A 1.000 201 0% 149 46.3% 36 47.2% possibly_damaging(0.649) deleterious(0) deleterious(0.672) NULL OR4D9 390199 genome.wustl.edu 37 11 59282859 59282859 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004711.1 +1 provisional p.A158 0.001 188 0% 145 46.2% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OSBP 5007 genome.wustl.edu 37 11 59361520 59361520 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002556.2 -1 reviewed p.R507Q 0.993 127 0% 96 28.1% 54 22.2% possibly_damaging(0.949) deleterious(0) deleterious(0.838) HMMPfam_Oxysterol_BP MRPL16 54948 genome.wustl.edu 37 11 59573897 59573897 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017840.3 -1 reviewed p.R227W 0.994 471 0% 341 44% 94 47.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL CD5 921 genome.wustl.edu 37 11 60891392 60891392 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014207.3 +1 validated p.T421M 0.185 81 0% 83 24.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DAGLA 747 genome.wustl.edu 37 11 61491044 61491044 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006133.1 +1 validated p.R183L 1.000 74 0% 55 58.2% 0 - possibly_damaging(0.633) tolerated(0.14) deleterious(0.471) NULL RAB3IL1 5866 genome.wustl.edu 37 11 61672275 61672275 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013401.2 -1 provisional p.R246M 1.000 76 0% 47 42.6% 5 40% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL INCENP 3619 genome.wustl.edu 37 11 61897376 61897376 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040694.1 +1 validated p.R126H 0.952 25 0.000 9 0.667 28 57.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TUT1 64852 genome.wustl.edu 37 11 62348917 62348917 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022830.2 -1 reviewed p.R177Q 1.000 58 0% 40 57.5% 32 62.5% probably_damaging(0.999) tolerated(0.11) deleterious(0.762) superfamily_Nucleotidyltransferase TUT1 64852 genome.wustl.edu 37 11 62358996 62358996 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000476907 -1 known p.Q26* 0.009 86 0% 65 53.8% 5 40% - - - NULL EML3 256364 genome.wustl.edu 37 11 62373584 62373584 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153265.2 -1 validated p.R536H 1.000 58 0% 44 54.5% 6 50% possibly_damaging(0.685) tolerated(0.06) deleterious(0.567) HMMSmart_SM00320,superfamily_WD40 repeat-like GANAB 23193 genome.wustl.edu 37 11 62402392 62402392 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198335.2 -1 validated p.R154Q 0.002 179 0% 125 48.8% 227 47.1% benign(0.012) tolerated(0.49) neutral(0.011) NULL TAF6L 10629 genome.wustl.edu 37 11 62546361 62546361 + Missense_Mutation SNP C C G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006473.2 +1 reviewed p.L153V 1.000 161 0% 102 12.7% 18 22.2% possibly_damaging(0.737) deleterious(0.01) deleterious(0.675) NULL CHRM1 1128 genome.wustl.edu 37 11 62677245 62677245 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000738.2 -1 reviewed p.R443H 1.000 147 0% 79 51.9% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) superfamily_Family A G protein-coupled receptor-like PLCB3 5331 genome.wustl.edu 37 11 64028887 64028887 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000932.2 +1 reviewed p.E583K 1.000 98 0% 45 51.1% 44 52.2% benign(0.03) deleterious(0.05) neutral(0.347) superfamily_PLC-like phosphodiesterases PLCB3 5331 genome.wustl.edu 37 11 64033989 64033989 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000932.2 +1 reviewed p.R1127W 0.195 106 0.9% 71 53.5% 49 46.9% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_PLC-beta_C BAD 572 genome.wustl.edu 37 11 64039220 64039220 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000394531 -1 known p.R128K 0.518 28 0% 21 57.1% 57 45.6% unknown(0) - - HMMPfam_Bcl-2_BAD GPR137 56834 genome.wustl.edu 37 11 64055278 64055278 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020155.3 +1 validated p.R165W 0.818 46 0% 44 34.1% 23 43.4% probably_damaging(0.978) deleterious(0.03) deleterious(0.785) NULL NRXN2 9379 genome.wustl.edu 37 11 64410186 64410186 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138734.1 -1 reviewed p.A31T 0.885 29 0% 21 71.4% 0 - - - - NULL SF1 7536 genome.wustl.edu 37 11 64536711 64536711 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004630.3 -1 reviewed p.R255W 0.989 185 0% 127 49.6% 235 40.4% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Eukaryotic type KH-domain (KH-domain type I) CDCA5 113130 genome.wustl.edu 37 11 64847073 64847073 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080668.3 -1 validated p.R144C 0.993 37 0% 43 53.5% 24 45.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sororin ZFPL1 7542 genome.wustl.edu 37 11 64852274 64852274 + Splice_Site SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006782.3 +1 validated e1+2 1.000 73 0% 38 34.2% 10 90% - - - - ZFPL1 7542 genome.wustl.edu 37 11 64855520 64855520 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006782.3 +1 validated p.A289 0.991 37 0% 24 37.5% 56 26.7% - - - NULL LOC100131416 100131416 genome.wustl.edu 37 11 64878804 64878804 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_001716064.2 -1 model p.R122* 0.009 60 0% 38 34.2% 113 61.9% benign(0.025) - - NULL EHBP1L1 254102 genome.wustl.edu 37 11 65346592 65346592 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099409.1 +1 validated p.R50C 1.000 77 0% 37 67.6% 12 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CATSPER1 117144 genome.wustl.edu 37 11 65793402 65793402 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_053054.3 -1 reviewed p.G150D 0.000 94 0% 60 50% 0 - possibly_damaging(0.778) deleterious(0.01) deleterious(0.697) NULL KLC2 64837 genome.wustl.edu 37 11 66030471 66030471 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134775.1 +1 validated p.V239A 1.000 48 0% 46 56.5% 37 32.4% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Rab5-bind,PatternScan_KINESIN_LIGHT,superfamily_SSF48452 KLC2 64837 genome.wustl.edu 37 11 66034015 66034015 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000394065 +1 known p.A474 0.000 18 0% 15 53.3% 0 - - - - NULL YIF1A 10897 genome.wustl.edu 37 11 66053209 66053209 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020470.2 -1 validated p.V150M 1.000 76 1.3% 38 50% 107 53.2% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_YIF1 NPAS4 266743 genome.wustl.edu 37 11 66188767 66188767 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178864.3 +1 validated p.Y39 1.000 41 0% 23 47.8% 0 - - - - NULL ACTN3 89 genome.wustl.edu 37 11 66325542 66325542 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001104.1 +1 reviewed p.G391 1.000 53 0% 43 46.5% 0 - - - - HMMPfam_Spectrin,superfamily_Spectrin repeat PC 5091 genome.wustl.edu 37 11 66619313 66619313 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000920.3 -1 reviewed p.R644W 0.999 95 0% 71 45.1% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HMGL-like,superfamily_SSF51569 PC 5091 genome.wustl.edu 37 11 66620053 66620053 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000920.3 -1 reviewed p.P561L 0.263 69 0% 37 51.4% 5 60% benign(0.04) deleterious(0) neutral(0.447) superfamily_SSF51569 C11orf86 254439 genome.wustl.edu 37 11 66742874 66742874 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136485.1 +1 predicted p.R14Q 0.047 16 0% 16 68.8% 0 - probably_damaging(0.986) tolerated(0.25) deleterious(0.471) NULL KDM2A 22992 genome.wustl.edu 37 11 67017760 67017760 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012308.2 +1 reviewed p.R753 0.143 57 0% 36 55.6% 43 48.8% - - - NULL ADRBK1 156 genome.wustl.edu 37 11 67049973 67049973 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001619.3 +1 reviewed p.W374R 1.000 130 0% 93 45.2% 59 52.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase SSH3 54961 genome.wustl.edu 37 11 67072333 67072333 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000376757 +1 known p.Q16* 0.000 94 0% 54 44.4% 41 41.4% benign(0) deleterious(0.05) neutral(0.345) HMMSmart_SM00195 RAD9A 5883 genome.wustl.edu 37 11 67163283 67163283 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004584.2 +1 reviewed p.H182 1.000 64 0% 51 51% 17 52.9% - - - HMMPfam_Rad9 PITPNM1 9600 genome.wustl.edu 37 11 67261304 67261304 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004910.2 -1 validated p.D1005N 1.000 17 0% 10 60% 70 45.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TBX10 347853 genome.wustl.edu 37 11 67399304 67399304 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005995.3 -1 provisional p.L310 0.954 299 0% 197 40.1% 0 - - - - NULL UNC93B1 81622 genome.wustl.edu 37 11 67764105 67764105 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000227471 -1 known p.E352K 1.000 77 0% 60 48.3% 57 49.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TCIRG1 10312 genome.wustl.edu 37 11 67811044 67811044 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006019.2 +1 reviewed p.P213S 0.336 39 0% 21 33.3% 19 36.8% benign(0.008) tolerated(0.22) neutral(0.042) HMMPfam_V_ATPase_I MTL5 9633 genome.wustl.edu 37 11 68506227 68506227 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004923.3 -1 reviewed p.N286 0.000 190 0% 139 47.5% 5 20% - - - NULL MRGPRF 116535 genome.wustl.edu 37 11 68772956 68772956 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098515.1 -1 validated p.Y274 0.992 67 0% 27 44.4% 3 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SHANK2 22941 genome.wustl.edu 37 11 70333710 70333710 + Silent SNP C C T rs141694314 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012309.3 -1 reviewed p.P301 0.968 285 0% 168 45.8% 1 0% - - - NULL ARAP1 116985 genome.wustl.edu 37 11 72422184 72422184 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040118.2 -1 reviewed p.D365 0.022 123 0% 94 36.2% 21 57.1% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ARAP1 116985 genome.wustl.edu 37 11 72437998 72437998 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040118.2 -1 reviewed p.R59H 0.996 47 0% 40 42.5% 9 55.5% possibly_damaging(0.91) deleterious(0) deleterious(0.807) HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain GDPD5 81544 genome.wustl.edu 37 11 75146607 75146607 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030792.6 -1 validated p.G588D 0.000 45 0% 34 52.9% 15 26.6% benign(0) tolerated(0.91) - NULL LRRC32 2615 genome.wustl.edu 37 11 76371492 76371492 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128922.1 -1 reviewed p.A382V 0.000 22 0% 13 76.9% 3 33.3% benign(0.001) tolerated(0.3) neutral(0.029) superfamily_SSF52058 MYO7A 4647 genome.wustl.edu 37 11 76900500 76900500 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000260.3 +1 reviewed p.S1205 0.001 146 0% 78 39.7% 0 - - - - HMMPfam_MyTH4,HMMSmart_SM00139 ALG8 79053 genome.wustl.edu 37 11 77824999 77824999 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024079.4 -1 reviewed p.R237H 0.928 324 0% 244 13.9% 47 2.1% benign(0.067) tolerated(0.09) neutral(0.301) HMMPfam_Alg6_Alg8 ODZ4 26011 genome.wustl.edu 37 11 78369590 78369590 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098816.2 -1 validated p.H2608R 1.000 77 0% 51 43.1% 0 - probably_damaging(0.998) tolerated(0.11) deleterious(0.746) NULL ODZ4 26011 genome.wustl.edu 37 11 78380658 78380658 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098816.2 -1 validated p.R2244 1.000 233 0% 156 42.3% 0 - - - - NULL C11orf82 220042 genome.wustl.edu 37 11 82641316 82641316 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145018.3 +1 validated p.T131 1.000 220 0.5% 169 43.2% 0 - - - - NULL ANKRD42 338699 genome.wustl.edu 37 11 82921384 82921384 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182603.2 +1 validated p.R97W 0.996 242 0% 166 53.6% 7 28.5% probably_damaging(1) tolerated(0.18) deleterious(0.556) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat PICALM 8301 genome.wustl.edu 37 11 85711816 85711816 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007166.2 -1 validated p.R342C 1.000 150 0% 119 47.9% 57 36.8% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL EED 8726 genome.wustl.edu 37 11 85988132 85988132 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003797.2 +1 reviewed p.S359 1.000 385 0% 352 42.9% 33 45.4% - - - superfamily_WD40 repeat-like FZD4 8322 genome.wustl.edu 37 11 86662486 86662486 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012193.2 -1 reviewed p.G438W 1.000 229 0% 179 22.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Frizzled GRM5 2915 genome.wustl.edu 37 11 88780513 88780513 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001143831.2 -1 reviewed p.S176R 1.000 91 0% 72 41.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_Periplasmic binding protein-like I ENSG00000204455 0 genome.wustl.edu 37 11 89595824 89595824 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000311917 +1 known p.E385 0.000 414 0% 289 22.1% 0 - - - - HMMPfam_SPRY ENSG00000214391 0 genome.wustl.edu 37 11 90016135 90016135 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000318973 +1 known p.R104 1.000 354 0% 243 13.6% 675 0% - - - HMMPfam_Tubulin,superfamily_Tubulin_FtsZ KDELC2 143888 genome.wustl.edu 37 11 108361813 108361813 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153705.4 -1 validated p.R95M 1.000 192 0% 150 37.3% 1 100% probably_damaging(0.964) deleterious(0.01) deleterious(0.812) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin DDX10 1662 genome.wustl.edu 37 11 108535928 108535928 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004398.2 +1 reviewed p.P16 0.998 42 0% 47 61.7% 7 71.4% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ZC3H12C 85463 genome.wustl.edu 37 11 110007998 110007998 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033390.1 +1 validated p.T211M 0.962 124 0% 105 54.3% 0 - benign(0.32) tolerated(0.11) neutral(0.372) NULL ARHGAP20 57569 genome.wustl.edu 37 11 110451320 110451320 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020809.2 -1 validated p.G784C 0.000 81 0% 71 14.1% 1 0% possibly_damaging(0.753) deleterious(0) deleterious(0.721) NULL BTG4 54766 genome.wustl.edu 37 11 111368030 111368030 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017589.2 -1 reviewed p.S139L 0.003 197 0% 144 50% 0 - benign(0.001) tolerated(0.56) neutral(0.006) NULL IL10RA 3587 genome.wustl.edu 37 11 117869687 117869687 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001558.3 +1 reviewed p.L356 0.000 67 0% 41 41.5% 1 0% - - - NULL UBE4A 9354 genome.wustl.edu 37 11 118261413 118261413 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004788.2 +1 reviewed p.R944H 1.000 241 0% 180 42.2% 27 59.2% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_Ufd2P_core PHLDB1 23187 genome.wustl.edu 37 11 118501973 118501973 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144758.1 +1 validated p.R626Q 1.000 33 0% 22 40.9% 22 59% possibly_damaging(0.745) tolerated(0.07) deleterious(0.593) NULL C2CD2L 9854 genome.wustl.edu 37 11 118983560 118983560 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014807.3 +1 validated p.R455W 1.000 69 0% 60 55% 22 45.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ABCG4 64137 genome.wustl.edu 37 11 119029419 119029419 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142505.1 +1 reviewed p.M440I 1.000 169 0% 125 44% 1 100% possibly_damaging(0.894) deleterious(0.01) deleterious(0.758) HMMPfam_ABC2_membrane PVRL1 5818 genome.wustl.edu 37 11 119535724 119535724 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002855.4 -1 reviewed p.G429 0.998 14 0% 15 33.3% 25 80% - - - NULL PVRL1 5818 genome.wustl.edu 37 11 119535730 119535732 + In_Frame_Del DEL CTT CTT - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002855.4 -1 reviewed p.K427in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL DDX25 29118 genome.wustl.edu 37 11 125775165 125775165 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013264.3 +1 reviewed p.R41Q 0.021 183 0% 132 45.5% 0 - probably_damaging(0.974) tolerated(0.33) neutral(0.440) NULL SRPR 6734 genome.wustl.edu 37 11 126135230 126135230 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003139.3 -1 reviewed p.R415H 1.000 80 0% 45 51.1% 149 39.5% benign(0.001) tolerated(0.23) neutral(0.042) superfamily_SSF52540 NFRKB 4798 genome.wustl.edu 37 11 129739725 129739725 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006165.3 -1 validated p.G1090 0.906 97 0% 70 40% 40 40% - - - NULL NFRKB 4798 genome.wustl.edu 37 11 129755399 129755399 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006165.3 -1 validated p.R204C 1.000 57 0% 36 63.9% 23 69.5% unknown(0) deleterious(0) - NULL GLB1L3 112937 genome.wustl.edu 37 11 134147689 134147689 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080407.2 +1 validated p.L82P 0.878 126 0% 88 43.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases KDM5A 5927 genome.wustl.edu 37 12 459827 459827 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042603.1 -1 reviewed p.P423L 1.000 210 0% 165 43.6% 9 55.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ERC1 23085 genome.wustl.edu 37 12 1219383 1219383 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178040.2 +1 reviewed p.R396H 1.000 299 0% 219 50.7% 14 71.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cast CACNA1C 775 genome.wustl.edu 37 12 2716175 2716175 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_199460.2 +1 reviewed p.G1099W 1.000 119 0% 85 48.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels FKBP4 2288 genome.wustl.edu 37 12 2909014 2909014 + Splice_Site SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002014.3 +1 reviewed e6-2 0.999 384 0% 281 43.1% 0 - - - - - KCNA6 3742 genome.wustl.edu 37 12 4920229 4920229 + Missense_Mutation SNP T T A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002235.3 +1 reviewed p.L341H 1.000 86 0% 66 37.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_SSF81324 KCNA6 3742 genome.wustl.edu 37 12 4920724 4920724 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002235.3 +1 reviewed p.R506Q 0.771 144 0% 71 26.8% 0 - benign(0.003) tolerated(0.33) neutral(0.024) NULL NTF3 4908 genome.wustl.edu 37 12 5603411 5603411 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102654.1 +1 reviewed p.A24T 1.000 211 0.5% 136 46.3% 0 - possibly_damaging(0.792) tolerated(0.34) neutral(0.320) NULL VWF 7450 genome.wustl.edu 37 12 6128410 6128410 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000552.3 -1 reviewed p.R1392W 0.000 67 0% 53 45.3% 14 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like PLEKHG6 55200 genome.wustl.edu 37 12 6427966 6427966 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144856.1 +1 validated p.R444H 0.864 348 0% 221 47.5% 9 22.2% probably_damaging(0.999) tolerated(0.05) deleterious(0.836) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like IFFO1 25900 genome.wustl.edu 37 12 6664575 6664575 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001039670.1 -1 validated p.P207 0.947 94 0% 74 56.8% 0 - - - - NULL GNB3 2784 genome.wustl.edu 37 12 6954872 6954872 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002075.2 +1 reviewed p.T274 0.006 68 0% 41 43.9% 4 50% - - - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 CD163L1 283316 genome.wustl.edu 37 12 7559293 7559293 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_174941.4 -1 reviewed p.A308T 0.136 428 0% 288 50% 0 - probably_damaging(0.959) deleterious(0) deleterious(0.847) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like SLC2A14 144195 genome.wustl.edu 37 12 7966968 7966968 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153449.2 -1 provisional p.G503S 0.000 294 0% 217 79.3% 0 - benign(0) tolerated(0.87) neutral(0.001) NULL A2ML1 144568 genome.wustl.edu 37 12 8998798 8998798 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144670.3 +1 validated p.E555K 0.787 391 0.3% 309 46.6% 1 100% possibly_damaging(0.643) deleterious(0.01) deleterious(0.631) HMMPfam_A2M_N_2 CLEC1B 51266 genome.wustl.edu 37 12 10150920 10150920 + Missense_Mutation SNP C C T rs150507224 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016509.3 -1 validated p.V42M 0.059 368 0.8% 308 42.2% 0 - benign(0) tolerated(0.27) neutral(0.034) NULL STYK1 55359 genome.wustl.edu 37 12 10782093 10782093 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018423.2 -1 validated p.R211Q 1.000 83 0% 70 48.6% 0 - possibly_damaging(0.482) tolerated(0.16) neutral(0.220) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) TAS2R50 259296 genome.wustl.edu 37 12 11139402 11139402 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_176890.2 -1 validated p.G20R 0.057 66 0% 53 47.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like LRP6 4040 genome.wustl.edu 37 12 12302006 12302006 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002336.2 -1 reviewed p.R1026C 1.000 303 0% 231 43.3% 8 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain GRIN2B 2904 genome.wustl.edu 37 12 13722885 13722885 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000834.3 -1 reviewed p.C746 1.000 34 0% 36 52.8% 0 - - - - HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850 ATF7IP 55729 genome.wustl.edu 37 12 14587305 14587305 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018179.3 +1 validated p.P531 1.000 273 0% 214 23.4% 13 7.6% - - - NULL ATF7IP 55729 genome.wustl.edu 37 12 14589100 14589100 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018179.3 +1 validated p.R569H 0.996 299 0% 223 45.7% 9 44.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL PDE3A 5139 genome.wustl.edu 37 12 20769231 20769231 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000921.3 +1 validated p.S446L 1.000 180 0% 115 40% 4 75% possibly_damaging(0.616) deleterious(0.01) deleterious(0.620) NULL SLCO1B3 28234 genome.wustl.edu 37 12 21011428 21011428 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019844.2 +1 validated p.P94 0.870 617 0.2% 469 41.4% 0 - - - - HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter GYS2 2998 genome.wustl.edu 37 12 21693497 21693497 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021957.3 -1 reviewed p.I552 0.943 149 0% 95 42.1% 0 - - - - HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase FGD4 121512 genome.wustl.edu 37 12 32791771 32791771 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000266482 +1 known p.G447 0.000 179 0% 151 45% 0 - - - - NULL KIF21A 55605 genome.wustl.edu 37 12 39752122 39752122 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017641.3 -1 validated p.T358M 1.000 467 0% 355 49% 11 27.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases DBX2 440097 genome.wustl.edu 37 12 45410277 45410277 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001004329.2 -1 validated p.G271D 0.004 169 0% 129 45.7% 0 - possibly_damaging(0.68) deleterious(0.03) deleterious(0.607) NULL ARID2 196528 genome.wustl.edu 37 12 46245258 46245258 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152641.2 +1 validated p.Q1118* 1.000 114 0% 91 50.5% 18 11.1% - - - NULL RND1 27289 genome.wustl.edu 37 12 49251932 49251932 + Silent SNP C C T rs145827381 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014470.3 -1 validated p.T182 0.274 281 0% 226 46.5% 2 0% - - - HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases ENSG00000246003 0 genome.wustl.edu 37 12 49690329 49690329 + RNA SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000501178 -1 known NULL 0.000 190 0% 124 48.4% 0 - - - - - ANKRD33 341405 genome.wustl.edu 37 12 52285057 52285057 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182608.3 +1 validated p.Q443* 0.655 142 0% 94 45.7% 0 - - - - NULL ACVRL1 94 genome.wustl.edu 37 12 52310000 52310000 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000020.2 +1 reviewed p.R410H 0.999 116 0% 59 44.1% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Kinase_like,HMMPfam_Pkinase KRT75 9119 genome.wustl.edu 37 12 52827658 52827658 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004693.2 -1 reviewed p.R144Q 0.211 405 0% 271 45.4% 0 - possibly_damaging(0.525) tolerated(0.62) neutral(0.181) NULL KRT6A 3853 genome.wustl.edu 37 12 52882317 52882317 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005554.3 -1 reviewed p.A407T 0.785 204 0% 171 43.9% 226 42% benign(0.032) tolerated(0.47) neutral(0.012) HMMPfam_Filament KRT3 3850 genome.wustl.edu 37 12 53184087 53184087 + Nonsense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_057088.2 -1 reviewed p.Y542* 0.003 90 0% 66 48.5% 0 - - - - NULL KRT3 3850 genome.wustl.edu 37 12 53185493 53185493 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_057088.2 -1 reviewed p.I432 0.024 429 0% 270 51.9% 0 - - - - superfamily_Prefoldin,HMMPfam_Filament TENC1 23371 genome.wustl.edu 37 12 53456938 53456938 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015319.2 +1 reviewed p.R1307W 1.000 57 0% 46 56.5% 10 30% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729 ESPL1 9700 genome.wustl.edu 37 12 53664581 53664581 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012291.4 +1 validated p.T456 1.000 174 0% 115 47.8% 5 40% - - - NULL MAP3K12 7786 genome.wustl.edu 37 12 53878849 53878849 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006301.2 -1 reviewed p.R344H 1.000 240 0% 160 48.1% 5 20% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) superfamily_Kinase_like,HMMPfam_Pkinase CALCOCO1 57658 genome.wustl.edu 37 12 54109663 54109663 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020898.2 -1 validated p.G392S 0.830 99 0% 61 37.7% 37 48.6% probably_damaging(0.98) deleterious(0.03) deleterious(0.788) HMMPfam_CALCOCO1 CALCOCO1 57658 genome.wustl.edu 37 12 54119005 54119005 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020898.2 -1 validated p.R8W 1.000 241 0% 154 45.5% 43 55.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NFE2 4778 genome.wustl.edu 37 12 54686463 54686463 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136023.1 -1 provisional p.R273W 0.932 34 0% 20 50% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1 OR6C1 390321 genome.wustl.edu 37 12 55714600 55714600 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005182.1 +1 provisional p.T73A 1.000 176 0% 146 46.6% 0 - benign(0.262) deleterious(0.02) neutral(0.411) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ESYT1 23344 genome.wustl.edu 37 12 56525270 56525270 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015292.2 +1 validated p.V242I 0.297 303 0% 197 44.7% 66 45.4% possibly_damaging(0.706) tolerated(0.24) neutral(0.291) NULL HSD17B6 8630 genome.wustl.edu 37 12 57167813 57167813 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003725.2 +1 reviewed p.A59 0.596 133 0% 97 38.1% 0 - - - - HMMPfam_adh_short,superfamily_NAD(P)-bd MYO1A 4640 genome.wustl.edu 37 12 57422573 57422573 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005379.2 -1 reviewed p.K1033R 1.000 241 0.4% 172 44.2% 0 - possibly_damaging(0.848) tolerated(0.16) neutral(0.385) HMMPfam_Myosin_TH1 INHBE 83729 genome.wustl.edu 37 12 57850554 57850554 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031479.3 +1 validated p.L326I 1.000 216 0% 140 43.6% 0 - probably_damaging(0.973) deleterious(0.01) deleterious(0.821) HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501 MARS 4141 genome.wustl.edu 37 12 57894208 57894208 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004990.2 +1 reviewed p.R399H 1.000 260 0% 145 34.5% 73 42.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_1g,superfamily_SSF52374 OS9 10956 genome.wustl.edu 37 12 58090147 58090147 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006812.3 +1 reviewed p.A190 0.971 179 0% 108 52.8% 151 47.6% - - - superfamily_Mannose 6-phosphate receptor domain OS9 10956 genome.wustl.edu 37 12 58114213 58114213 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006812.3 +1 reviewed p.R597H 0.927 263 0% 189 47.6% 174 41.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL AGAP2 116986 genome.wustl.edu 37 12 58125404 58125404 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001122772.1 -1 validated p.E659K 0.999 139 0.7% 120 42.5% 1 0% possibly_damaging(0.945) tolerated(0.27) neutral(0.423) NULL AVIL 10677 genome.wustl.edu 37 12 58201264 58201264 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006576.3 -1 reviewed p.H447 0.378 100 0% 113 46% 2 50% - - - HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins PPM1H 57460 genome.wustl.edu 37 12 63195669 63195669 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020700.1 -1 validated p.R228H 1.000 22 0% 22 22.7% 4 25% probably_damaging(0.997) tolerated(0.3) deleterious(0.495) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain LRRC10 376132 genome.wustl.edu 37 12 70003888 70003888 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_201550.2 -1 provisional p.T244M 0.937 141 0% 107 57% 0 - possibly_damaging(0.871) deleterious(0) deleterious(0.783) NULL BEST3 144453 genome.wustl.edu 37 12 70048916 70048916 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032735.2 -1 validated p.P593L 0.985 126 0% 106 41.5% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL ZFC3H1 196441 genome.wustl.edu 37 12 72029253 72029253 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144982.4 -1 validated p.S736 1.000 313 0% 240 47.5% 7 14.2% - - - NULL TMEM19 55266 genome.wustl.edu 37 12 72091182 72091182 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018279.3 +1 validated p.A169T 1.000 237 0% 162 46.9% 15 40% probably_damaging(0.998) tolerated(0.37) deleterious(0.493) HMMPfam_DUF92 PTPRQ 374462 genome.wustl.edu 37 12 80943267 80943267 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000266688 +1 known p.Q1347* 0.001 180 0% 129 16.3% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III TMTC2 160335 genome.wustl.edu 37 12 83251240 83251240 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152588.1 +1 provisional p.A179T 0.998 147 0.7% 122 40.2% 15 46.6% benign(0.048) tolerated(0.07) neutral(0.322) NULL LRRIQ1 84125 genome.wustl.edu 37 12 85497838 85497838 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001079910.1 +1 validated p.S1089N 1.000 137 0% 97 43.3% 0 - probably_damaging(0.98) tolerated(0.05) deleterious(0.769) HMMSmart_SM00369,superfamily_RNI-like POC1B 282809 genome.wustl.edu 37 12 89860666 89860666 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_172240.1 -1 provisional p.H305Y 0.001 394 0% 377 47.7% 29 58.6% benign(0.052) tolerated(0.11) neutral(0.275) NULL METAP2 10988 genome.wustl.edu 37 12 95868078 95868078 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006838.3 +1 reviewed p.K41 1.000 161 0% 92 40.2% 55 52.7% - - - NULL LTA4H 4048 genome.wustl.edu 37 12 96400102 96400102 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000895.1 -1 provisional p.T507M 0.995 254 0.4% 219 44.7% 222 52.2% benign(0) tolerated(0.06) neutral(0.323) HMMPfam_Leuk-A4-hydro_C,superfamily_ARM repeat C12orf63 374467 genome.wustl.edu 37 12 97073407 97073407 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198520.2 +1 validated p.V290M 0.997 145 0% 95 50.5% 0 - unknown(0) deleterious(0.01) - NULL NEDD1 121441 genome.wustl.edu 37 12 97330475 97330475 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135175.1 +1 validated p.R276Q 1.000 99 0% 101 40.6% 13 46.1% probably_damaging(1) tolerated(0.48) deleterious(0.510) HMMSmart_SM00320,superfamily_WD40 repeat-like UHRF1BP1L 23074 genome.wustl.edu 37 12 100441380 100441380 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015054.1 -1 validated p.P1337S 0.977 230 0% 148 39.2% 12 58.3% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL GNPTAB 79158 genome.wustl.edu 37 12 102158602 102158602 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024312.4 -1 reviewed p.V698A 0.532 111 0% 75 46.7% 19 52.6% possibly_damaging(0.95) deleterious(0.03) deleterious(0.758) NULL STAB2 55576 genome.wustl.edu 37 12 104111599 104111599 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017564.9 +1 reviewed p.L1555F 0.337 232 0% 156 46.2% 0 - benign(0.004) tolerated(0.09) neutral(0.296) superfamily_SSF57196 TCP11L2 255394 genome.wustl.edu 37 12 106715429 106715429 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152772.1 +1 provisional p.R194* 0.802 284 0% 211 40.3% 4 0% - - - HMMPfam_Tcp11 POLR3B 55703 genome.wustl.edu 37 12 106890563 106890563 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018082.5 +1 validated p.A951T 1.000 233 0% 164 47% 15 60% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase POLR3B 55703 genome.wustl.edu 37 12 106890685 106890685 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018082.5 +1 validated p.S991 0.017 282 0% 185 50.3% 12 33.3% - - - HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase RFX4 5992 genome.wustl.edu 37 12 107125982 107125982 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_213594.1 +1 reviewed p.R476W 1.000 143 0% 127 50.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ASCL4 121549 genome.wustl.edu 37 12 108169003 108169003 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_203436.2 +1 validated p.T4M 0.000 50 0% 36 52.8% 0 - benign(0.008) deleterious(0) neutral(0.445) NULL SART3 9733 genome.wustl.edu 37 12 108931364 108931364 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014706.3 -1 reviewed p.F403 0.809 182 0% 128 42.2% 23 52.1% - - - HMMSmart_SM00386,superfamily_TPR-like ACACB 32 genome.wustl.edu 37 12 109629663 109629663 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001093.3 +1 reviewed p.P769 0.231 251 0% 185 37.3% 1 0% - - - NULL FOXN4 121643 genome.wustl.edu 37 12 109725720 109725720 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_213596.2 -1 validated p.L133M 0.994 24 0% 11 45.5% 2 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL MYO1H 283446 genome.wustl.edu 37 12 109876413 109876413 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001101421.3 +1 provisional p.R755Q 0.994 135 0% 106 45.3% 0 - benign(0) tolerated(0.59) neutral(0.004) superfamily_P-loop containing nucleoside triphosphate hydrolases GIT2 9815 genome.wustl.edu 37 12 110421484 110421484 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_057169.3 -1 reviewed p.V141M 1.000 156 0% 151 45.7% 13 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat LOC100287839 100287839 genome.wustl.edu 37 12 112605307 112605307 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343213.1 +1 model p.V261I 0.049 90 0% 40 42.5% 18 50% - - - NULL RPL6 6128 genome.wustl.edu 37 12 112843167 112843167 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000970.3 -1 reviewed p.T243M 1.000 42 0% 26 38.5% 1109 45.1% possibly_damaging(0.668) deleterious(0) deleterious(0.681) HMMPfam_Ribosomal_L6e TPCN1 53373 genome.wustl.edu 37 12 113705711 113705711 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001143819.1 +1 validated p.R232C 1.000 172 0% 126 42.1% 8 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels MED13L 23389 genome.wustl.edu 37 12 116399188 116399188 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015335.3 -1 validated p.Q2172 1.000 120 0% 89 48.3% 15 60% - - - NULL CIT 11113 genome.wustl.edu 37 12 120128209 120128209 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007174.1 -1 validated p.R1936H 1.000 32 0% 36 55.6% 6 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CIT 11113 genome.wustl.edu 37 12 120151298 120151298 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007174.1 -1 validated p.L1446 1.000 116 0% 53 47.2% 3 66.6% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like CIT 11113 genome.wustl.edu 37 12 120271915 120271915 + Missense_Mutation SNP C C T rs35593907 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007174.1 -1 validated p.V212I 0.856 154 0% 126 33.3% 4 75% benign(0.111) tolerated(0.16) neutral(0.068) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase RNF10 9921 genome.wustl.edu 37 12 121001190 121001190 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014868.4 +1 reviewed p.T432M 0.003 254 0% 131 50.4% 117 50.4% benign(0.002) tolerated(0.14) neutral(0.249) NULL ANAPC5 51433 genome.wustl.edu 37 12 121773498 121773498 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016237.4 -1 reviewed p.R263H 1.000 201 0.5% 209 46.4% 101 56.4% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_TPR-like SETD1B 23067 genome.wustl.edu 37 12 122260949 122260949 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015048.1 +1 validated p.A1445 0.001 6 0.000 13 0.538 20 60% - - - NULL SETD1B 23067 genome.wustl.edu 37 12 122263261 122263261 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015048.1 +1 validated p.A1733T 0.001 53 0% 47 44.7% 44 50% unknown(0) - - NULL VPS33A 65082 genome.wustl.edu 37 12 122724464 122724464 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022916.4 -1 validated p.T375 0.608 174 0.6% 151 40.4% 13 23% - - - HMMPfam_Sec1,superfamily_Sec1-like VPS33A 65082 genome.wustl.edu 37 12 122729240 122729240 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022916.4 -1 validated p.T282M 1.000 185 0% 117 43.6% 18 55.5% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Sec1,superfamily_Sec1-like VPS33A 65082 genome.wustl.edu 37 12 122735567 122735567 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022916.4 -1 validated p.T188M 1.000 75 0% 53 60.4% 23 47.8% probably_damaging(0.976) tolerated(0.13) deleterious(0.670) HMMPfam_Sec1,superfamily_Sec1-like HIP1R 9026 genome.wustl.edu 37 12 123346288 123346288 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003959.1 +1 validated p.L1065 0.000 156 0% 87 55.2% 44 56.8% - - - NULL PITPNM2 57605 genome.wustl.edu 37 12 123470878 123470878 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020845.2 -1 validated p.A1249V 1.000 4 0.000 7 0.857 2 0% benign(0.157) tolerated(0.14) neutral(0.264) NULL PITPNM2 57605 genome.wustl.edu 37 12 123519086 123519086 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020845.2 -1 validated p.R18C 1.000 128 0% 77 55.8% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_IP_trans,superfamily_Bet v1-like SBNO1 55206 genome.wustl.edu 37 12 123795629 123795629 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018183.3 -1 validated p.R1089C 1.000 214 0% 193 15% 6 16.6% probably_damaging(0.992) deleterious(0.02) deleterious(0.831) NULL SNRNP35 11066 genome.wustl.edu 37 12 123950394 123950394 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_180699.2 +1 reviewed p.R108C 1.000 115 0% 95 46.3% 40 50% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 TCTN2 79867 genome.wustl.edu 37 12 124189110 124189110 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024809.3 +1 validated p.P548 0.000 87 0% 71 50.7% 25 48% - - - NULL FZD10 11211 genome.wustl.edu 37 12 130648605 130648605 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007197.2 +1 reviewed p.R373H 1.000 85 0% 56 51.8% 8 75% probably_damaging(1) tolerated(0.13) deleterious(0.752) HMMPfam_Frizzled FBRSL1 57666 genome.wustl.edu 37 12 133149178 133149178 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142641.1 +1 validated p.F518 1.000 204 0% 140 45% 66 33.3% - - - NULL FBRSL1 57666 genome.wustl.edu 37 12 133158343 133158343 + Silent SNP G G A rs184339754 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142641.1 +1 validated p.P686 0.570 19 0% 10 60% 107 44.8% - - - NULL POLE 5426 genome.wustl.edu 37 12 133214683 133214683 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006231.2 -1 validated p.Y1865 0.968 216 0% 135 47.4% 29 58.6% - - - HMMPfam_DUF1744 GOLGA3 2802 genome.wustl.edu 37 12 133350753 133350753 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005895.3 -1 reviewed p.Q1433* 1.000 95 0% 79 54.4% 23 56.5% - - - NULL GOLGA3 2802 genome.wustl.edu 37 12 133354393 133354393 + Splice_Site SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005895.3 -1 reviewed e18-2 1.000 45 0% 21 23.8% 0 - - - - - PARP4 143 genome.wustl.edu 37 13 25075900 25075900 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006437.3 -1 reviewed p.V69I 0.004 278 0% 213 44.1% 28 42.8% benign(0.003) tolerated(1) - HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT LNX2 222484 genome.wustl.edu 37 13 28127483 28127483 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153371.3 -1 validated p.A547V 0.323 105 0% 80 55% 19 36.8% benign(0) tolerated(1) - HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ PDX1 3651 genome.wustl.edu 37 13 28498640 28498640 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000209.3 +1 reviewed p.G218 0.000 28 0% 23 26.1% 0 - - - - NULL FLT3 2322 genome.wustl.edu 37 13 28588590 28588590 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004119.2 -1 reviewed p.A953V 0.992 193 0% 149 52.3% 0 - possibly_damaging(0.712) tolerated(0.11) deleterious(0.529) NULL FLT3 2322 genome.wustl.edu 37 13 28608477 28608477 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004119.2 -1 reviewed p.I555 0.546 171 0% 119 38.7% 0 - - - - NULL MTUS2 23281 genome.wustl.edu 37 13 29599559 29599559 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001033602.2 +1 validated p.R252C 0.000 58 0% 60 51.7% 0 - benign(0.007) tolerated(0.16) neutral(0.059) NULL HSPH1 10808 genome.wustl.edu 37 13 31719803 31719803 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006644.2 -1 validated p.T494M 0.993 301 0% 218 15.1% 63 19% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain TRPC4 7223 genome.wustl.edu 37 13 38320455 38320455 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003306.1 -1 validated p.H172 0.830 89 0% 69 39.1% 0 - - - - NULL FOXO1 2308 genome.wustl.edu 37 13 41134954 41134954 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002015.3 -1 reviewed p.R225H 1.000 109 0% 88 19.3% 11 36.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785 EPSTI1 94240 genome.wustl.edu 37 13 43500494 43500494 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001002264.1 -1 validated p.C212Y 0.000 282 0% 232 43.1% 1 0% benign(0.158) tolerated(0.17) neutral(0.073) NULL ENOX1 55068 genome.wustl.edu 37 13 43896621 43896621 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127615.1 -1 validated p.Q387R 1.000 284 0% 216 48.6% 0 - benign(0.032) tolerated(0.24) neutral(0.039) NULL CCDC122 160857 genome.wustl.edu 37 13 44433853 44433853 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144974.3 -1 validated p.M170I 0.047 381 0.8% 285 47.7% 6 50% benign(0.001) deleterious(0) neutral(0.445) NULL CPB2 1361 genome.wustl.edu 37 13 46658462 46658462 + Missense_Mutation SNP G G A rs186705993 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001872.3 -1 reviewed p.P56L 1.000 214 0.5% 141 44% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors RCBTB1 55213 genome.wustl.edu 37 13 50125487 50125487 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018191.3 -1 reviewed p.A277T 0.292 249 0% 179 47.5% 22 31.8% benign(0) tolerated(0.33) neutral(0.024) HMMPfam_RCC1,superfamily_RCC1/BLIP-II ATP7B 540 genome.wustl.edu 37 13 52549277 52549277 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000053.2 -1 reviewed p.R27C 0.001 152 0% 137 48.2% 2 100% possibly_damaging(0.656) deleterious(0) deleterious(0.675) NULL NEK5 341676 genome.wustl.edu 37 13 52686429 52686429 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_199289.1 -1 provisional p.R96Q 0.089 363 0% 256 46.9% 0 - probably_damaging(0.99) tolerated(0.24) deleterious(0.479) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CKAP2 26586 genome.wustl.edu 37 13 53035753 53035753 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098525.1 +1 validated p.R265 0.002 163 0% 145 17.2% 31 16.1% - - - NULL PCDH8 5100 genome.wustl.edu 37 13 53422332 53422332 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002590.2 -1 reviewed p.D80 1.000 42 0% 12 50% 0 - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like DACH1 1602 genome.wustl.edu 37 13 72204836 72204836 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080759.4 -1 reviewed p.A326 1.000 167 0% 146 52.7% 0 - - - - NULL TBC1D4 9882 genome.wustl.edu 37 13 75930296 75930296 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014832.2 -1 validated p.A421V 1.000 108 0% 89 42.7% 6 50% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like SLITRK5 26050 genome.wustl.edu 37 13 88328572 88328572 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015567.1 +1 validated p.P310L 0.998 26 0% 24 25% 17 11.7% benign(0.152) deleterious(0) neutral(0.458) NULL DOCK9 23348 genome.wustl.edu 37 13 99446889 99446889 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000400228 -1 known p.G667S 0.000 105 0% 69 46.4% 24 45.8% - - - NULL DOCK9 23348 genome.wustl.edu 37 13 99498279 99498279 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000400224 -1 known p.R54Q 1.000 259 0% 199 46.2% 4 75% probably_damaging(0.994) tolerated(0.15) deleterious(0.693) NULL TPP2 7174 genome.wustl.edu 37 13 103257238 103257238 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003291.2 +1 reviewed p.G87 0.767 372 0% 212 40.1% 11 54.5% - - - HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53 TPP2 7174 genome.wustl.edu 37 13 103298646 103298646 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003291.2 +1 reviewed p.P799L 1.000 214 0% 164 48.2% 31 41.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TPP2 7174 genome.wustl.edu 37 13 103317180 103317180 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003291.2 +1 reviewed p.A1079 0.986 198 0% 129 36.4% 34 44.1% - - - NULL DAOA 267012 genome.wustl.edu 37 13 106142150 106142150 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000454325 +1 known p.T33I 0.000 158 0% 147 42.2% 0 - - - - NULL F10 2159 genome.wustl.edu 37 13 113783880 113783880 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000504.3 +1 reviewed p.C62Y 0.997 116 0% 90 37.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Gla,HMMSmart_SM00069,PatternScan_GLA_1,superfamily_GLA-domain CUL4A 8451 genome.wustl.edu 37 13 113887602 113887602 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001008895.1 +1 validated p.A208 0.038 101 0% 88 17% 67 19.4% - - - HMMPfam_Cullin,superfamily_Cullin repeat TMCO3 55002 genome.wustl.edu 37 13 114150081 114150081 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017905.4 +1 validated p.R62H 0.958 95 0% 50 48% 12 41.6% benign(0.083) deleterious(0.01) neutral(0.412) NULL ATP4B 496 genome.wustl.edu 37 13 114309166 114309166 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000705.3 -1 reviewed p.P68 0.101 143 0% 94 46.8% 0 - - - - HMMPfam_Na_K-ATPase SALL2 6297 genome.wustl.edu 37 14 21991702 21991702 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005407.1 -1 validated p.N720 0.751 93 0% 73 41.1% 13 38.4% unknown(0) - - NULL SALL2 6297 genome.wustl.edu 37 14 21991838 21991838 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005407.1 -1 validated p.R675H 0.980 77 0% 51 33.3% 14 21.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RBM23 55147 genome.wustl.edu 37 14 23375503 23375503 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001077351.1 -1 reviewed p.R101H 0.997 93 0% 81 59.3% 63 46% probably_damaging(0.973) deleterious(0.03) deleterious(0.779) NULL SLC22A17 51310 genome.wustl.edu 37 14 23817481 23817481 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000397263 -1 known p.A201V 1.000 87 0% 57 49.1% 0 - - - - NULL IL25 64806 genome.wustl.edu 37 14 23844844 23844844 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022789.3 +1 reviewed p.D97Y 1.000 68 0% 46 32.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_IL17,superfamily_Cystine-knot cytokines MYH7 4625 genome.wustl.edu 37 14 23884476 23884476 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000257.2 -1 reviewed p.A1763T 1.000 231 0% 151 53% 0 - benign(0.33) tolerated(0.07) neutral(0.422) HMMPfam_Myosin_tail_1 PSME2 5721 genome.wustl.edu 37 14 24612871 24612871 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002818.2 -1 reviewed p.R188W 1.000 178 0% 114 51.8% 242 47.1% benign(0.1) deleterious(0.03) neutral(0.372) HMMPfam_PA28_beta,superfamily_Prot_act_regA RNF31 55072 genome.wustl.edu 37 14 24620062 24620062 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017999.4 +1 validated p.R485W 1.000 55 1.8% 50 56% 30 56.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL IRF9 10379 genome.wustl.edu 37 14 24633981 24633981 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006084.4 +1 validated p.R270C 0.864 43 0% 27 63% 90 48.8% possibly_damaging(0.727) deleterious(0) deleterious(0.709) superfamily_SMAD_FHA,HMMPfam_IRF-3 TINF2 26277 genome.wustl.edu 37 14 24711189 24711189 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099274.1 -1 reviewed p.E68 0.839 104 0% 63 41.3% 29 55.1% - - - NULL RABGGTA 5875 genome.wustl.edu 37 14 24738314 24738314 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004581.3 -1 validated p.W229* 1.000 365 0% 255 45.5% 22 22.7% - - - HMMPfam_PPTA,superfamily_Prenyl_trans RPL36AL 6166 genome.wustl.edu 37 14 50085653 50085653 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001.3 -1 reviewed p.R57Q 1.000 138 0.7% 104 44.2% 497 43.8% benign(0) tolerated(0.14) neutral(0.249) HMMPfam_Ribosomal_L44,superfamily_Ribosomal_zn-bd ATL1 51062 genome.wustl.edu 37 14 51094836 51094836 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015915.4 +1 reviewed p.R403* 1.000 300 0% 245 12.2% 6 33.3% - - - superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain TRIM9 114088 genome.wustl.edu 37 14 51467459 51467459 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015163.5 -1 reviewed p.T469M 0.365 141 0% 113 48.7% 0 - benign(0) tolerated(0.22) neutral(0.042) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III FBXO34 55030 genome.wustl.edu 37 14 55818336 55818336 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017943.3 +1 validated p.E410K 0.969 162 0% 129 46.5% 33 36.3% possibly_damaging(0.907) tolerated(0.15) deleterious(0.601) NULL C14orf37 145407 genome.wustl.edu 37 14 58605624 58605624 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001872.2 -1 predicted p.A151 0.000 92 0% 84 45.2% 2 100% - - - NULL GPHB5 122876 genome.wustl.edu 37 14 63779733 63779733 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000314140 -1 known p.P100L 1.000 240 0% 200 50.5% 0 - - - - HMMSmart_SM00068,HMMPfam_Cys_knot,superfamily_Cystine-knot cytokines SYNE2 23224 genome.wustl.edu 37 14 64692053 64692053 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182914.2 +1 reviewed p.R6845W 0.001 28 0% 21 42.9% 40 40% unknown(0) - - NULL ZBTB1 22890 genome.wustl.edu 37 14 64990104 64990104 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001123329.1 +1 validated p.H628Y 1.000 162 0% 145 13.1% 44 6.8% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MAX 4149 genome.wustl.edu 37 14 65568337 65568337 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000441116 -1 known p.K5E 1.000 29 0% 26 50% 0 - unknown(0) - - NULL RDH12 145226 genome.wustl.edu 37 14 68200555 68200555 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152443.2 +1 reviewed p.R314Q 1.000 116 0% 60 53.3% 1 0% benign(0.001) tolerated(0.42) neutral(0.014) NULL ZFYVE26 23503 genome.wustl.edu 37 14 68265084 68265084 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015346.3 -1 reviewed p.R632Q 0.000 150 0% 102 44.1% 2 0% benign(0.018) tolerated(0.52) neutral(0.009) NULL DCAF5 8816 genome.wustl.edu 37 14 69619523 69619523 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003861.2 -1 validated p.A58V 1.000 65 0% 43 37.2% 10 30% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 ZFYVE1 53349 genome.wustl.edu 37 14 73437703 73437703 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021260.1 -1 reviewed p.G741R 1.000 70 0% 56 51.8% 13 76.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger TMED10 10972 genome.wustl.edu 37 14 75643278 75643278 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006827.5 -1 reviewed p.S2F 1.000 42 0% 54 37% 155 36.7% unknown(0) deleterious(0) - NULL ISM2 145501 genome.wustl.edu 37 14 77948807 77948807 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_199296.2 -1 reviewed p.S277 0.029 491 0% 394 44.4% 0 - - - - NULL ALKBH1 8846 genome.wustl.edu 37 14 78142127 78142127 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006020.2 -1 reviewed p.A204 0.080 210 0% 135 48.1% 11 36.3% - - - NULL DIO2 1734 genome.wustl.edu 37 14 80669200 80669200 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007023.2 -1 reviewed p.N254 0.999 141 0% 88 37.5% 2 50% - - - HMMPfam_T4_deiodinase FLRT2 23768 genome.wustl.edu 37 14 86088573 86088573 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013231.4 +1 reviewed p.R239C 0.997 69 0% 60 50% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52058 ZC3H14 79882 genome.wustl.edu 37 14 89061406 89061406 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207662.3 +1 validated p.S112 0.987 84 0% 78 47.4% 0 - - - - NULL C14orf49 161176 genome.wustl.edu 37 14 95905457 95905457 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152592.3 -1 validated p.S763 0.000 203 0% 134 43.3% 0 - - - - NULL C14orf49 161176 genome.wustl.edu 37 14 95918710 95918710 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152592.3 -1 validated p.A383V 0.000 80 0% 40 40% 0 - benign(0.248) tolerated(0.1) neutral(0.311) NULL BCL11B 64919 genome.wustl.edu 37 14 99642348 99642348 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138576.2 -1 reviewed p.A275 0.998 21 0% 11 54.5% 0 - - - - NULL CCNK 8812 genome.wustl.edu 37 14 99959123 99959123 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001099402.1 +1 reviewed p.Q37* 0.957 115 0% 96 49% 52 53.8% - - - superfamily_Cyclin-like WARS 7453 genome.wustl.edu 37 14 100820897 100820897 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004184.3 -1 reviewed p.M143I 1.000 84 0% 65 24.6% 153 20.9% benign(0.008) tolerated(0.07) neutral(0.319) superfamily_Nucleotidylyl transferase BEGAIN 57596 genome.wustl.edu 37 14 101005566 101005566 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020836.3 -1 validated p.Y174 0.967 31 0% 25 52% 1 100% - - - NULL RTL1 388015 genome.wustl.edu 37 14 101347456 101347456 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134888.2 -1 reviewed p.V1224I 0.987 30 0% 34 47.1% 0 - possibly_damaging(0.945) deleterious(0) deleterious(0.834) NULL DYNC1H1 1778 genome.wustl.edu 37 14 102510224 102510224 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001376.4 +1 reviewed p.R4176C 1.000 138 0% 100 47% 329 50.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Dynein_heavy TECPR2 9895 genome.wustl.edu 37 14 102918873 102918873 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014844.3 +1 validated p.A1183 0.063 5 0.000 12 0.667 12 25% - - - HMMPfam_Hyd_WA,HMMSmart_TECPR KIAA0284 283638 genome.wustl.edu 37 14 105356024 105356024 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001112726.1 +1 validated p.T1269 0.944 101 0% 54 50% 61 52.4% - - - NULL KIAA0284 283638 genome.wustl.edu 37 14 105359982 105359982 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001112726.1 +1 validated p.T1387 0.002 24 0% 21 57.1% 78 53.8% - - - NULL NUDT14 256281 genome.wustl.edu 37 14 105644038 105644038 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_177533.3 -1 validated p.T39M 0.997 94 0% 64 40.6% 38 50% probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_NUDIX,superfamily_NUDIX_hydrolase ENSG00000215407 0 genome.wustl.edu 37 15 20450277 20450277 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000400226 -1 known p.R349W 0.913 154 0% 135 15.6% 10 0% - - - HMMPfam_BRO1 LOC642131 642131 genome.wustl.edu 37 15 22472820 22472820 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_001716834.1 -1 model p.R158W 0.001 58 0% 48 35.4% 0 - - - - NULL GOLGA8E 390535 genome.wustl.edu 37 15 23443503 23443503 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000450934 +1 known p.R201C 0.013 467 0% 319 41.7% 0 - - - - NULL ATP10A 57194 genome.wustl.edu 37 15 25924908 25924908 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024490.3 -1 reviewed p.P1360 0.001 33 0% 23 52.2% 2 50% - - - NULL ATP10A 57194 genome.wustl.edu 37 15 25959081 25959081 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024490.3 -1 reviewed p.A695V 1.000 25 0% 25 56% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF56784 ENSG00000221138 0 genome.wustl.edu 37 15 33256249 33256249 + RNA SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000408211 -1 novel NULL 0.013 225 0.4% 135 37.8% 0 - - - - - RYR3 6263 genome.wustl.edu 37 15 33926871 33926871 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001036.3 +1 validated p.R1038W 0.989 318 0% 214 50% 0 - probably_damaging(1) - - HMMPfam_RyR RYR3 6263 genome.wustl.edu 37 15 33954940 33954940 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001036.3 +1 validated p.V1737M 0.999 432 0% 329 46.5% 0 - probably_damaging(0.99) - - NULL C15orf41 84529 genome.wustl.edu 37 15 36950061 36950061 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130010.1 +1 validated p.R101W 1.000 268 0% 207 50.7% 3 100% probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL FAM98B 283742 genome.wustl.edu 37 15 38776701 38776701 + Silent SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173611.2 +1 validated p.G381 0.002 85 0% 45 48.9% 1 100% - - - NULL THBS1 7057 genome.wustl.edu 37 15 39874866 39874866 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003246.2 +1 reviewed p.D180 0.019 22 0% 26 53.8% 7 28.5% - - - HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases EIF2AK4 440275 genome.wustl.edu 37 15 40259646 40259646 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001013703.2 +1 validated p.I373 0.011 145 0% 89 46.1% 20 45% - - - HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase BAHD1 22893 genome.wustl.edu 37 15 40751595 40751595 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014952.3 +1 validated p.R311H 0.293 30 0% 18 61.1% 23 47.8% possibly_damaging(0.597) deleterious(0) deleterious(0.651) NULL LOC100288995 100288995 genome.wustl.edu 37 15 41222926 41222926 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343338.1 -1 model p.A443V 0.966 69 0% 62 48.4% 0 - - - - NULL MGA 23269 genome.wustl.edu 37 15 41988691 41988691 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080541.2 +1 validated p.R495* 0.974 77 0% 52 51.9% 6 66.6% - - - NULL MGA 23269 genome.wustl.edu 37 15 42003134 42003134 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080541.2 +1 validated p.V891I 0.913 153 0% 143 23.1% 3 66.6% benign(0.368) deleterious(0) deleterious(0.561) NULL JMJD7 100137047 genome.wustl.edu 37 15 42129054 42129054 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001114632.1 +1 validated p.R260C 0.607 47 0% 36 58.3% 38 28.9% benign(0.002) deleterious(0) neutral(0.445) HMMSmart_SM00558,superfamily_Clavaminate synthase-like SPTBN5 51332 genome.wustl.edu 37 15 42165718 42165718 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016642.2 -1 validated p.A1625V 0.780 189 0% 115 53% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat VPS39 23339 genome.wustl.edu 37 15 42479524 42479524 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015289.2 -1 reviewed p.A160V 1.000 305 0% 159 38.4% 13 38.4% benign(0.018) tolerated(0.2) neutral(0.050) HMMPfam_CNH STARD9 57519 genome.wustl.edu 37 15 42978184 42978184 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_001129482.3 +1 model p.A1384T 0.976 88 0% 69 50.7% 0 - benign(0.358) - - NULL CDAN1 146059 genome.wustl.edu 37 15 43017735 43017735 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138477.2 -1 reviewed p.L1134 0.997 34 0% 27 63% 17 35.2% - - - NULL EPB42 2038 genome.wustl.edu 37 15 43498575 43498575 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000119.2 -1 reviewed p.A554V 0.128 177 0.6% 128 21.9% 0 - probably_damaging(0.953) tolerated(0.53) neutral(0.404) HMMPfam_Transglut_C,superfamily_Transglut_C TGM7 116179 genome.wustl.edu 37 15 43579540 43579540 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052955.2 -1 validated p.A268V 0.394 58 0% 45 40% 0 - possibly_damaging(0.95) tolerated(0.12) deleterious(0.654) superfamily_SSF54001 TP53BP1 7158 genome.wustl.edu 37 15 43701225 43701225 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001141980.1 -1 validated p.L1824F 1.000 220 0% 161 41% 64 65.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT FRMD5 84978 genome.wustl.edu 37 15 44180392 44180392 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032892.3 -1 validated p.E289K 1.000 327 0% 272 51.8% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_FERM_C,superfamily_PH domain-like CASC4 113201 genome.wustl.edu 37 15 44705545 44705545 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138423.2 +1 reviewed p.R418* 1.000 138 0% 95 45.3% 47 29.7% - - - NULL SPG11 80208 genome.wustl.edu 37 15 44867134 44867134 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025137.3 -1 reviewed p.C1991Y 1.000 240 0% 160 46.3% 41 51.2% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL C15orf33 196951 genome.wustl.edu 37 15 49620867 49620867 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152647.2 -1 validated p.S475 0.010 230 0% 226 42.9% 1 0% - - - NULL TRPM7 54822 genome.wustl.edu 37 15 50926583 50926585 + In_Frame_Del DEL CTT CTT - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017672.4 -1 reviewed p.E334in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL TRPM7 54822 genome.wustl.edu 37 15 50931740 50931740 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017672.4 -1 reviewed p.A181T 1.000 278 0% 199 44.7% 7 57.1% probably_damaging(1) tolerated(0.53) deleterious(0.507) NULL WDR72 256764 genome.wustl.edu 37 15 53907651 53907651 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182758.2 -1 validated p.P918S 1.000 52 0% 17 23.5% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ALDH1A2 8854 genome.wustl.edu 37 15 58306108 58306108 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003888.2 -1 reviewed p.R104H 0.282 203 0% 162 40.7% 0 - possibly_damaging(0.837) tolerated(0.06) deleterious(0.642) HMMPfam_Aldedh,superfamily_ALDH-like SLTM 79811 genome.wustl.edu 37 15 59180686 59180686 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024755.2 -1 validated p.G758E 1.000 327 0% 245 45.7% 70 54.2% probably_damaging(1) tolerated(0.09) deleterious(0.796) NULL HERC1 8925 genome.wustl.edu 37 15 63921015 63921015 + Splice_Site SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003922.3 -1 reviewed e69-1 1.000 172 0% 107 12.1% 0 - - - - - HERC1 8925 genome.wustl.edu 37 15 63982784 63982784 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003922.3 -1 reviewed p.L1965 0.955 98 0% 56 46.4% 3 100% - - - NULL ZNF609 23060 genome.wustl.edu 37 15 64792055 64792055 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015042.1 +1 provisional p.A146V 0.996 173 0% 152 53.9% 5 0% benign(0.042) deleterious(0.02) neutral(0.386) NULL ZNF609 23060 genome.wustl.edu 37 15 64968078 64968078 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015042.1 +1 provisional p.Q1009* 1.000 199 0% 142 46.5% 10 20% - - - NULL RBPMS2 348093 genome.wustl.edu 37 15 65041232 65041232 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_194272.1 -1 provisional p.A129T 0.941 490 0% 320 41.9% 15 20% benign(0.003) tolerated(0.24) neutral(0.037) NULL PIF1 80119 genome.wustl.edu 37 15 65113607 65113607 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025049.2 -1 validated p.M310I 1.000 62 0% 44 50% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases LCTL 197021 genome.wustl.edu 37 15 66853342 66853342 + Splice_Site SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207338.2 -1 validated e6+2 1.000 65 0% 52 55.8% 0 - - - - - IQCH 64799 genome.wustl.edu 37 15 67664608 67664608 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001031715.2 +1 validated p.V305I 0.001 309 0% 232 45.7% 3 33.3% benign(0) tolerated(0.53) neutral(0.007) NULL PAQR5 54852 genome.wustl.edu 37 15 69682074 69682074 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001104554.1 +1 validated p.A156V 1.000 115 0% 104 43.3% 0 - benign(0.293) deleterious(0.02) deleterious(0.474) HMMPfam_HlyIII THSD4 79875 genome.wustl.edu 37 15 72023520 72023520 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024817.2 +1 provisional p.A532T 0.921 114 0% 99 34.3% 1 100% benign(0.005) tolerated(0.37) neutral(0.019) NULL GRAMD2 196996 genome.wustl.edu 37 15 72462232 72462232 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001012642.2 -1 validated p.S30 0.000 406 0% 286 55.2% 0 - - - - NULL LOC100287646 100287646 genome.wustl.edu 37 15 74315550 74315550 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343353.1 -1 model p.R113C 0.000 10 0% 10 70% 44 47.7% - - - NULL CLK3 1198 genome.wustl.edu 37 15 74919993 74919993 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130028.1 +1 reviewed p.P490 0.172 137 0% 102 15.7% 42 14.2% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CSK 1445 genome.wustl.edu 37 15 75090958 75090958 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127190.1 +1 validated p.A6 0.982 17 0% 13 30.8% 119 43.6% - - - NULL SIN3A 25942 genome.wustl.edu 37 15 75684744 75684744 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145357.1 -1 reviewed p.R897Q 1.000 307 0% 237 48.5% 32 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SIN3A 25942 genome.wustl.edu 37 15 75685065 75685065 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145357.1 -1 reviewed p.A790V 1.000 226 0% 181 47% 50 56% probably_damaging(0.999) tolerated(0.12) deleterious(0.751) NULL LINGO1 84894 genome.wustl.edu 37 15 77906661 77906661 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032808.5 -1 validated p.A530T 1.000 178 0% 109 46.8% 1 0% possibly_damaging(0.659) tolerated(0.86) neutral(0.233) NULL IREB2 3658 genome.wustl.edu 37 15 78786397 78786397 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004136.2 +1 validated p.T824M 1.000 122 0% 94 45.7% 26 50% probably_damaging(0.985) tolerated(0.09) deleterious(0.728) HMMPfam_Aconitase_C,superfamily_Aconitase PSMA4 5685 genome.wustl.edu 37 15 78841246 78841246 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102667.1 +1 validated p.R249H 0.995 180 0% 158 44.9% 262 43.1% unknown(0) tolerated(0.11) - NULL ANKRD34C 390616 genome.wustl.edu 37 15 79585779 79585779 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343327.1 +1 model p.A51 0.346 204 0% 177 45.2% 0 - - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat AP3B2 8120 genome.wustl.edu 37 15 83346515 83346515 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004644.3 -1 validated p.T429I 0.998 75 0% 67 29.9% 2 50% probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_Adaptin_N,superfamily_ARM-type_fold FSD2 123722 genome.wustl.edu 37 15 83455654 83455654 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007122.2 -1 provisional p.C163W 0.999 165 0% 130 44.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL LOC727963 727963 genome.wustl.edu 37 15 84748624 84748624 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343381.1 +1 model p.A10V 0.001 17 0% 21 61.9% 0 - - - - NULL ALPK3 57538 genome.wustl.edu 37 15 85403056 85403056 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020778.4 +1 validated p.V1541I 0.001 24 0% 21 66.7% 1 100% benign(0.365) deleterious(0.03) deleterious(0.480) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin KLHL25 64410 genome.wustl.edu 37 15 86311930 86311930 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022480.3 -1 validated p.A371V 0.995 27 0% 20 60% 3 66.6% benign(0) tolerated(0.37) neutral(0.019) HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central RHCG 51458 genome.wustl.edu 37 15 90026303 90026303 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016321.1 -1 provisional p.L173 0.510 96 0% 47 55.3% 0 - - - - HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909) WDR93 56964 genome.wustl.edu 37 15 90286572 90286572 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020212.1 +1 provisional p.R671W 0.338 113 0% 63 42.9% 2 50% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL C15orf38 348110 genome.wustl.edu 37 15 90451599 90451599 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182616.2 -1 validated p.R72C 0.997 250 0% 162 48.1% 46 36.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UPF0552 MAN2A2 4122 genome.wustl.edu 37 15 91455311 91455311 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006122.2 +1 validated p.G716 0.386 41 2.4% 22 54.5% 36 36.1% - - - superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C LOC100131297 100131297 genome.wustl.edu 37 15 91575038 91575038 + Splice_Site SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343384.1 -1 model e3-1 0.825 11 0% 10 60% 0 - - - - - IGF1R 3480 genome.wustl.edu 37 15 99478204 99478204 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000875.3 +1 reviewed p.N1036 0.990 355 0% 258 47.7% 45 46.6% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like IGF1R 3480 genome.wustl.edu 37 15 99500432 99500432 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000875.3 +1 reviewed p.E1289K 1.000 90 0% 59 42.4% 58 55.1% benign(0.051) tolerated(0.11) neutral(0.275) NULL PGPEP1L 145814 genome.wustl.edu 37 15 99512702 99512702 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001102612.2 -1 validated p.R108H 0.000 74 0% 54 31.5% 0 - possibly_damaging(0.789) tolerated(0.27) neutral(0.330) superfamily_Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) SYNM 23336 genome.wustl.edu 37 15 99672618 99672618 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145728.2 +1 reviewed p.C1351Y 0.000 87 0% 64 46.9% 0 - - - - NULL ENSG00000214394 0 genome.wustl.edu 37 15 100332812 100332812 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000398270 +1 known p.C114R 1.000 115 0% 62 48.4% 0 - - - - NULL ALDH1A3 220 genome.wustl.edu 37 15 101427864 101427864 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000693.2 +1 reviewed p.R98W 0.576 26 0% 22 36.4% 0 - benign(0.058) deleterious(0.04) neutral(0.352) HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH LRRK1 79705 genome.wustl.edu 37 15 101606097 101606097 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024652.3 +1 validated p.M1819V 1.000 96 0% 71 15.5% 9 33.3% benign(0) deleterious(0.01) neutral(0.406) NULL CHSY1 22856 genome.wustl.edu 37 15 101775565 101775565 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000254190 -1 known p.R180C 0.948 129 0% 60 38.3% 25 52% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL RHBDF1 64285 genome.wustl.edu 37 16 111823 111823 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022450.3 -1 validated p.R394H 1.000 63 0% 38 47.4% 35 42.8% probably_damaging(0.995) tolerated(0.11) deleterious(0.729) NULL RHBDF1 64285 genome.wustl.edu 37 16 113635 113635 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022450.3 -1 validated p.E138K 1.000 59 0% 39 46.2% 34 35.2% possibly_damaging(0.928) deleterious(0.02) deleterious(0.758) NULL ARHGDIG 398 genome.wustl.edu 37 16 332337 332337 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001176.3 +1 validated p.K126N 1.000 135 0% 88 44.3% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Rho_GDI,superfamily_Ig_E-set DECR2 26063 genome.wustl.edu 37 16 457490 457490 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000429116 +1 known p.A22T 0.007 121 0% 87 44.8% 29 55.1% - - - superfamily_NAD(P)-binding Rossmann-fold domains C16orf11 146325 genome.wustl.edu 37 16 615240 615240 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145270.1 +1 predicted p.A550V 0.000 12 0.000 9 0.444 1 100% benign(0) tolerated(0.07) neutral(0.319) NULL C16orf11 146325 genome.wustl.edu 37 16 618031 618031 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000293874 +1 known p.P743L 0.000 59 0% 35 40% 1 100% - - - superfamily_NHL repeat ENSG00000245986 0 genome.wustl.edu 37 16 785008 785008 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000502230 +1 known NULL 0.000 12 0% 11 63.6% 0 - - - - - BAIAP3 8938 genome.wustl.edu 37 16 1397753 1397753 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003933.3 +1 reviewed p.E1021K 1.000 25 0% 16 50% 3 33.3% probably_damaging(0.991) deleterious(0.03) deleterious(0.808) superfamily_C2 domain (Calcium/lipid-binding domain CaLB) CLCN7 1186 genome.wustl.edu 37 16 1506160 1506160 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001287.4 -1 reviewed p.S290 0.021 20 0% 16 31.2% 36 52.7% - - - HMMPfam_Voltage_CLC,superfamily_Cl-channel_core CRAMP1L 57585 genome.wustl.edu 37 16 1718027 1718027 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020825.3 +1 validated p.P1056L 0.987 142 0% 92 48.9% 14 57.1% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL C16orf73 254528 genome.wustl.edu 37 16 1894913 1894913 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152764.2 -1 validated p.T277M 0.385 175 0% 116 43.1% 0 - benign(0.019) tolerated(0.11) neutral(0.273) superfamily_Nucleic_acid_OB MSRB1 51734 genome.wustl.edu 37 16 1990821 1990821 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016332.2 -1 reviewed p.R93* 0.998 81 0% 58 37.9% 41 43.9% - - - HMMPfam_SelR,superfamily_Mss4-like RNF151 146310 genome.wustl.edu 37 16 2018738 2018738 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_174903.4 +1 provisional p.R184W 0.011 11 0% 12 58.3% 0 - probably_damaging(0.988) deleterious(0.02) deleterious(0.821) superfamily_Traf_like TBL3 10607 genome.wustl.edu 37 16 2024810 2024810 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006453.2 +1 reviewed p.Y142 0.781 65 0% 39 17.9% 106 16% - - - HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 PKD1 5310 genome.wustl.edu 37 16 2168071 2168071 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001009944.2 -1 reviewed p.G308R 0.974 23 0% 13 30.8% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain TRAF7 84231 genome.wustl.edu 37 16 2222300 2222300 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032271.2 +1 validated p.A195V 0.000 30 0% 27 51.9% 99 58.5% benign(0) tolerated(0.5) neutral(0.010) superfamily_TRAF domain-like,superfamily_RING/U-box C16orf59 80178 genome.wustl.edu 37 16 2511057 2511057 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025108.2 +1 validated p.T146M 0.000 44 0% 30 46.7% 15 73.3% probably_damaging(0.969) tolerated(0.09) deleterious(0.708) NULL C16orf59 80178 genome.wustl.edu 37 16 2511087 2511087 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025108.2 +1 validated p.R156Q 0.000 41 0% 25 32% 13 23% benign(0.005) deleterious(0) neutral(0.445) NULL PRSS21 10942 genome.wustl.edu 37 16 2867870 2867870 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006799.2 +1 reviewed p.P54S 1.000 20 0% 14 35.7% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases OR2C1 4993 genome.wustl.edu 37 16 3406466 3406466 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012368.2 +1 validated p.G176R 0.889 87 0% 57 38.6% 0 - benign(0.299) deleterious(0) deleterious(0.537) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SLX4 84464 genome.wustl.edu 37 16 3639255 3639255 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032444.2 -1 provisional p.A1462T 0.000 38 0% 34 55.9% 5 80% benign(0.355) tolerated(0.5) neutral(0.122) NULL CREBBP 1387 genome.wustl.edu 37 16 3828110 3828110 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004380.2 -1 reviewed p.R672H 1.000 175 0% 122 52.5% 25 60% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PPL 5493 genome.wustl.edu 37 16 4935120 4935120 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002705.4 -1 reviewed p.R1179Q 1.000 166 0% 107 10.3% 68 16.1% probably_damaging(1) tolerated(0.38) deleterious(0.517) NULL PPL 5493 genome.wustl.edu 37 16 4943353 4943353 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002705.4 -1 reviewed p.G504E 1.000 30 0% 20 50% 30 50% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL SEC14L5 9717 genome.wustl.edu 37 16 5055945 5055945 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014692.1 +1 validated p.R445W 1.000 140 0.7% 118 44.1% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C CLEC16A 23274 genome.wustl.edu 37 16 11136200 11136200 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015226.2 +1 validated p.V584M 1.000 73 0% 38 57.9% 19 52.6% benign(0.422) tolerated(0.1) neutral(0.423) PatternScan_C_TYPE_LECTIN_1 LITAF 9516 genome.wustl.edu 37 16 11643568 11643568 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000381810 -1 known p.R138C 0.316 67 0% 59 57.6% 63 47.6% benign(0.023) tolerated(0.08) neutral(0.301) NULL NOMO1 23420 genome.wustl.edu 37 16 14976505 14976505 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014287.3 +1 reviewed p.R1028W 1.000 288 0% 199 30.7% 94 20.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Carboxypeptidase regulatory domain MYH11 4629 genome.wustl.edu 37 16 15835445 15835445 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040114.1 -1 reviewed p.R919W 1.000 114 0% 71 45.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MYH11 4629 genome.wustl.edu 37 16 15841973 15841973 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040114.1 -1 reviewed p.V711A 1.000 44 0% 34 55.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 ABCC6 368 genome.wustl.edu 37 16 16313417 16313417 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001171.5 -1 reviewed p.S156 0.000 120 0% 78 47.4% 0 - - - - NULL SMG1 23049 genome.wustl.edu 37 16 18828693 18828693 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015092.4 -1 reviewed p.R3332* 1.000 194 0% 138 49.3% 17 29.4% - - - NULL SMG1 23049 genome.wustl.edu 37 16 18846251 18846251 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015092.4 -1 reviewed p.A2765T 1.000 229 0% 165 23.6% 10 30% probably_damaging(0.957) tolerated(0.37) neutral(0.420) NULL UMOD 7369 genome.wustl.edu 37 16 20352615 20352615 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001008389.1 -1 reviewed p.R459W 0.966 114 0% 78 39.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Zona_pellucida,HMMSmart_SM00241 DNAH3 55567 genome.wustl.edu 37 16 21053361 21053361 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017539.1 -1 provisional p.P1542 0.867 187 0% 132 48.5% 0 - - - - HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases CHP2 63928 genome.wustl.edu 37 16 23767433 23767433 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022097.2 +1 provisional p.R91C 1.000 182 0% 142 42.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_EF-hand PRKCB 5579 genome.wustl.edu 37 16 24166145 24166145 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002738.6 +1 reviewed p.F402 1.000 162 0% 119 49.6% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TNRC6A 27327 genome.wustl.edu 37 16 24788637 24788637 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014494.2 +1 reviewed p.P183S 1.000 149 0% 104 30.8% 8 75% possibly_damaging(0.833) tolerated(0.25) neutral(0.354) NULL ZKSCAN2 342357 genome.wustl.edu 37 16 25251797 25251797 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001012981.4 -1 validated p.Y748 0.226 181 0% 107 43% 3 66.6% - - - superfamily_C2H2 and C2HC zinc fingers NSMCE1 197370 genome.wustl.edu 37 16 27268779 27268779 + Missense_Mutation SNP G G A rs7195194 byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145080.3 -1 validated p.T38M 0.898 86 0% 46 47.8% 133 43.6% benign(0.371) deleterious(0.03) deleterious(0.482) HMMPfam_SMC_Nse1 GTF3C1 2975 genome.wustl.edu 37 16 27506763 27506763 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001520.3 -1 validated p.R801W 0.996 68 0% 48 52.1% 28 53.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KIAA0556 23247 genome.wustl.edu 37 16 27709761 27709761 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015202.2 +1 validated p.N351 0.111 23 0% 15 73.3% 3 100% - - - NULL GSG1L 146395 genome.wustl.edu 37 16 27895832 27895832 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001109763.1 -1 validated p.F175 0.983 157 0% 129 38% 0 - - - - NULL APOBR 55911 genome.wustl.edu 37 16 28507978 28507978 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018690.2 +1 reviewed p.A530V 0.001 24 0% 22 36.4% 2 0% possibly_damaging(0.922) tolerated(0.13) deleterious(0.624) NULL ATP2A1 487 genome.wustl.edu 37 16 28895953 28895953 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173201.2 +1 reviewed p.R174Q 1.000 91 0% 53 39.6% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M ATP2A1 487 genome.wustl.edu 37 16 28913518 28913518 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173201.2 +1 reviewed p.A779T 1.000 90 0% 58 48.3% 2 50% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) superfamily_Calcium ATPase transmembrane domain M CDIPT 10423 genome.wustl.edu 37 16 29873949 29873949 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006319.3 -1 validated p.L46 0.971 161 0% 107 49.5% 103 40.7% - - - HMMPfam_CDP-OH_P_transf ASPHD1 253982 genome.wustl.edu 37 16 29912388 29912388 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181718.3 +1 validated p.A32 0.001 271 0% 201 45.3% 0 - - - - NULL HIRIP3 8479 genome.wustl.edu 37 16 30005349 30005349 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003609.2 -1 reviewed p.E373K 0.006 205 0% 140 41.4% 19 73.6% possibly_damaging(0.936) tolerated(0.27) neutral(0.415) NULL INO80E 283899 genome.wustl.edu 37 16 30012264 30012264 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173618.1 +1 provisional p.P100L 0.957 45 0% 36 44.4% 65 44.6% possibly_damaging(0.774) deleterious(0.02) deleterious(0.671) NULL TBX6 6911 genome.wustl.edu 37 16 30102201 30102201 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004608.3 -1 reviewed p.P77 0.000 106 0% 93 33.3% 1 0% - - - NULL ITGAL 3683 genome.wustl.edu 37 16 30495249 30495249 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002209.2 +1 reviewed p.A275V 0.000 74 0% 41 56.1% 2 0% benign(0.023) tolerated(0.29) neutral(0.030) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain SRCAP 10847 genome.wustl.edu 37 16 30740311 30740311 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006662.2 +1 validated p.R1895W 0.824 84 0% 52 51.9% 28 50% unknown(0) - - NULL RNF40 9810 genome.wustl.edu 37 16 30780579 30780579 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014771.2 +1 reviewed p.R774W 1.000 271 0% 180 39.4% 104 45.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ARMC5 79798 genome.wustl.edu 37 16 31477235 31477235 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001105247.1 +1 validated p.T643 0.448 87 0% 78 14.1% 14 0% - - - superfamily_ARM repeat SNX20 124460 genome.wustl.edu 37 16 50707444 50707444 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182854.2 -1 validated p.R275H 0.970 6 0.000 8 0.625 1 0% benign(0.091) tolerated(0.21) neutral(0.050) NULL BBS2 583 genome.wustl.edu 37 16 56540102 56540102 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031885.3 -1 reviewed p.R216Q 1.000 137 0% 98 19.4% 39 15.3% possibly_damaging(0.933) tolerated(0.25) neutral(0.416) superfamily_WD40 repeat-like NLRC5 84166 genome.wustl.edu 37 16 57063977 57063977 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032206.3 +1 validated p.V800I 0.000 164 0% 115 51.3% 17 23.5% benign(0.022) tolerated(0.37) neutral(0.020) superfamily_RNI-like NLRC5 84166 genome.wustl.edu 37 16 57067575 57067575 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032206.3 +1 validated p.T846M 0.001 251 0% 189 47.1% 12 33.3% probably_damaging(0.992) tolerated(0.09) deleterious(0.744) superfamily_RNI-like RSPRY1 89970 genome.wustl.edu 37 16 57238814 57238814 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_133368.1 +1 provisional p.R82W 0.998 176 0% 143 39.2% 33 30.3% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL CNGB1 1258 genome.wustl.edu 37 16 57931439 57931439 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001297.4 -1 reviewed p.A1035V 1.000 46 0% 41 58.5% 0 - probably_damaging(0.997) tolerated(0.07) deleterious(0.785) HMMPfam_cNMP_binding,HMMSmart_SM00100,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like CDH11 1009 genome.wustl.edu 37 16 65032562 65032562 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001797.2 -1 reviewed p.P142 0.000 202 0% 143 44.8% 6 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CES4A 283848 genome.wustl.edu 37 16 67034660 67034660 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173815.4 +1 validated p.A127V 0.000 12 0% 11 36.4% 0 - benign(0.001) tolerated(0.47) neutral(0.011) HMMPfam_COesterase,superfamily_SSF53474 HSF4 3299 genome.wustl.edu 37 16 67199862 67199862 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040667.2 +1 reviewed p.R125H 0.969 3 0.000 6 0.667 0 - probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_HSF_DNA-bind ELMO3 79767 genome.wustl.edu 37 16 67237673 67237673 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024712.3 +1 reviewed p.R739C 1.000 40 0% 21 52.4% 38 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CTRL 1506 genome.wustl.edu 37 16 67964349 67964349 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001907.1 -1 provisional p.T154M 0.001 272 0% 188 45.2% 3 100% possibly_damaging(0.851) tolerated(0.25) neutral(0.364) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys PLA2G15 23659 genome.wustl.edu 37 16 68289850 68289850 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012320.3 +1 reviewed p.A228 0.162 38 0% 38 34.2% 9 11.1% - - - HMMPfam_LACT,superfamily_alpha/beta-Hydrolases HAS3 3038 genome.wustl.edu 37 16 69143517 69143517 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005329.2 +1 reviewed p.A73 0.000 53 0% 33 42.4% 0 - - - - NULL HAS3 3038 genome.wustl.edu 37 16 69143728 69143728 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005329.2 +1 reviewed p.E144K 1.000 64 0% 48 56.2% 0 - benign(0.02) deleterious(0.02) neutral(0.384) superfamily_SSF53448 HAS3 3038 genome.wustl.edu 37 16 69152264 69152264 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138612.1 +1 reviewed p.G249W 0.970 188 0% 140 38.6% 234 44.8% unknown(0) deleterious(0) - superfamily_SSF53448 CIRH1A 84916 genome.wustl.edu 37 16 69170708 69170708 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032830.2 +1 reviewed p.A90V 0.745 321 0% 265 46.4% 51 54.9% benign(0.055) tolerated(0.16) neutral(0.063) HMMSmart_SM00320,superfamily_WD40 repeat-like ENSG00000226232 0 genome.wustl.edu 37 16 70010544 70010544 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000437824 -1 known p.R245H 0.003 27 0% 21 47.6% 2 0% probably_damaging(0.994) tolerated(1) neutral(0.452) HMMPfam_NPIP COG4 25839 genome.wustl.edu 37 16 70514975 70514975 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015386.2 -1 validated p.R770C 1.000 42 0% 33 51.5% 87 43.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL COG4 25839 genome.wustl.edu 37 16 70542361 70542361 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015386.2 -1 validated p.H337Y 1.000 504 0% 420 47.6% 51 47% benign(0) tolerated(0.5) neutral(0.010) HMMPfam_COG4,HMMSmart_SM00762 MARVELD3 91862 genome.wustl.edu 37 16 71663374 71663374 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001017967.2 +1 validated p.C191Y 1.000 146 0% 106 15.1% 25 12% probably_damaging(0.981) deleterious(0.01) deleterious(0.831) NULL MARVELD3 91862 genome.wustl.edu 37 16 71674489 71674489 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001017967.2 +1 validated p.S264 0.215 129 0.8% 76 55.3% 30 50% - - - HMMPfam_MARVEL HP 3240 genome.wustl.edu 37 16 72090132 72090132 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000356967 +1 known p.R3Q 0.000 375 0% 255 47.8% 1 0% benign(0.142) - - NULL ZFHX3 463 genome.wustl.edu 37 16 72830284 72830284 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006885.3 -1 reviewed p.P2099 0.101 67 0% 48 35.4% 1 100% - - - NULL RFWD3 55159 genome.wustl.edu 37 16 74695153 74695153 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018124.3 -1 validated p.A65 0.000 91 0% 64 35.9% 27 37% - - - NULL LDHD 197257 genome.wustl.edu 37 16 75148129 75148129 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153486.2 -1 reviewed p.F211 0.000 38 0% 35 60% 3 66.6% - - - superfamily_FAD-binding domain BCAR1 9564 genome.wustl.edu 37 16 75271174 75271174 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014567.3 -1 validated p.Y234 0.600 24 0% 19 57.9% 34 47% - - - NULL CMIP 80790 genome.wustl.edu 37 16 81712067 81712067 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198390.2 +1 validated p.R408C 1.000 23 0% 13 69.2% 41 43.9% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL DNAAF1 123872 genome.wustl.edu 37 16 84211407 84211407 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178452.4 +1 reviewed p.T713M 0.000 131 0% 78 48.7% 3 0% probably_damaging(0.969) deleterious(0) deleterious(0.856) NULL ATP2C2 9914 genome.wustl.edu 37 16 84438810 84438810 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014861.2 +1 validated p.A96V 0.014 147 0% 71 40.8% 5 0% benign(0) tolerated(0.52) neutral(0.009) HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M ATP2C2 9914 genome.wustl.edu 37 16 84456044 84456044 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014861.2 +1 validated p.P225S 1.000 170 0% 109 45% 3 100% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M USP10 9100 genome.wustl.edu 37 16 84797808 84797808 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005153.2 +1 reviewed p.V591I 0.898 201 0% 133 54.9% 91 37.3% benign(0.291) tolerated(0.32) neutral(0.113) HMMPfam_UCH,superfamily_SSF54001 ZC3H18 124245 genome.wustl.edu 37 16 88691668 88691668 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144604.3 +1 validated p.R701* 1.000 87 0% 50 50% 25 20% - - - NULL DPEP1 1800 genome.wustl.edu 37 16 89704334 89704334 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128141.1 +1 validated p.G340 0.129 190 0% 111 51.4% 7 57.1% - - - HMMPfam_Peptidase_M19,superfamily_SSF51556 ZNF276 92822 genome.wustl.edu 37 16 89804413 89804413 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001113525.1 +1 validated p.Q535R 1.000 74 0% 46 52.2% 42 52.3% possibly_damaging(0.891) deleterious(0.04) deleterious(0.700) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FANCA 2175 genome.wustl.edu 37 16 89811383 89811383 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000135.2 -1 reviewed p.R1204W 0.003 101 0% 59 32.2% 20 50% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ABR 29 genome.wustl.edu 37 17 914004 914004 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021962.2 -1 reviewed p.T734M 1.000 103 0% 56 35.7% 35 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP ABR 29 genome.wustl.edu 37 17 1028553 1028553 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021962.2 -1 reviewed p.V71I 0.979 68 0% 44 61.4% 0 - benign(0.007) tolerated(0.59) neutral(0.004) superfamily_DBL homology domain (DH-domain) SLC43A2 124935 genome.wustl.edu 37 17 1494645 1494645 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152346.1 -1 provisional p.K283 1.000 31 0% 28 39.3% 58 50% - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter RILP 83547 genome.wustl.edu 37 17 1550250 1550250 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031430.2 -1 validated p.S326 0.434 183 0% 127 48% 4 50% - - - NULL PRPF8 10594 genome.wustl.edu 37 17 1586951 1586951 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006445.3 -1 reviewed p.R49W 1.000 329 0% 242 48.8% 47 48.9% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL TSR1 55720 genome.wustl.edu 37 17 2228042 2228042 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018128.4 -1 validated p.G701D 1.000 222 0% 181 41.4% 60 55% probably_damaging(0.975) deleterious(0) deleterious(0.861) HMMPfam_DUF663 SPATA22 84690 genome.wustl.edu 37 17 3352395 3352395 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032598.4 -1 validated p.N126 1.000 350 0.3% 270 53.3% 0 - - - - NULL CAMKK1 84254 genome.wustl.edu 37 17 3783678 3783678 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_172207.2 -1 reviewed p.R291H 0.992 71 0% 29 62.1% 1 100% benign(0.315) deleterious(0.02) deleterious(0.482) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase RNF167 26001 genome.wustl.edu 37 17 4846728 4846728 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015528.1 +1 provisional p.R195H 1.000 245 0% 167 44.3% 180 50.5% benign(0.212) deleterious(0.01) neutral(0.426) NULL CAMTA2 23125 genome.wustl.edu 37 17 4889221 4889221 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015099.3 -1 validated p.R30H 0.998 218 0% 162 48.1% 13 30.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SLC52A1 55065 genome.wustl.edu 37 17 4937350 4937350 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001104577.1 -1 validated p.R145Q 0.997 281 0% 139 48.2% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) NULL ZNF594 84622 genome.wustl.edu 37 17 5085816 5085816 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032530.1 -1 validated p.G579D 0.000 282 0% 200 47% 5 60% probably_damaging(0.988) tolerated(0.2) deleterious(0.486) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 DHX33 56919 genome.wustl.edu 37 17 5347610 5347610 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020162.2 -1 reviewed p.R680Q 0.998 153 0% 122 47.5% 28 53.5% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_DUF1605 NLRP1 22861 genome.wustl.edu 37 17 5486002 5486002 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033004.3 -1 reviewed p.R146C 0.000 91 0% 66 24.2% 9 0% benign(0.377) deleterious(0) deleterious(0.565) NULL DLG4 1742 genome.wustl.edu 37 17 7094642 7094642 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001365.3 -1 reviewed p.R714H 1.000 297 0% 215 43.3% 14 50% probably_damaging(0.996) tolerated(0.1) deleterious(0.748) HMMSmart_GuKc,HMMPfam_Gua_kin_assoc_C,superfamily_SSF52540 SLC2A4 6517 genome.wustl.edu 37 17 7189779 7189779 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042.2 +1 reviewed p.A454V 1.000 442 0% 278 45.7% 0 - benign(0.004) tolerated(0.13) neutral(0.253) HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter ACAP1 9744 genome.wustl.edu 37 17 7245304 7245304 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014716.3 +1 validated p.R50H 0.110 117 0% 93 50.5% 1 0% benign(0.013) deleterious(0.02) neutral(0.384) NULL POLR2A 5430 genome.wustl.edu 37 17 7402796 7402796 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000937.3 +1 validated p.V553I 1.000 227 0% 144 35.4% 52 67.3% benign(0.106) tolerated(0.19) neutral(0.058) HMMPfam_RNA_pol_Rpb1_3,superfamily_SSF64484 DNAH2 146754 genome.wustl.edu 37 17 7637955 7637955 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020877.2 +1 validated p.V303I 0.996 150 0% 102 51% 0 - benign(0.081) tolerated(1) neutral(0.006) HMMPfam_DHC_N1 GUCY2D 3000 genome.wustl.edu 37 17 7918754 7918754 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000180.3 +1 reviewed p.V960M 0.993 48 0% 21 57.1% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase ALOX15B 247 genome.wustl.edu 37 17 7948582 7948582 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001141.2 +1 reviewed p.H292 0.077 103 0% 80 58.8% 0 - - - - HMMPfam_Lipoxygenase,superfamily_Lipoxigenase PIK3R5 23533 genome.wustl.edu 37 17 8791552 8791552 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142633.1 -1 validated p.R518C 0.933 63 0% 26 50% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PI3K_1B_p101 RCVRN 5957 genome.wustl.edu 37 17 9808123 9808123 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002903.2 -1 reviewed p.I125 1.000 85 0% 70 40% 0 - - - - HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand MYH4 4622 genome.wustl.edu 37 17 10352252 10352252 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017533.2 -1 validated p.L1432F 1.000 165 0% 108 42.6% 0 - possibly_damaging(0.941) deleterious(0.01) deleterious(0.792) HMMPfam_Myosin_tail_1 MYH4 4622 genome.wustl.edu 37 17 10355525 10355525 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017533.2 -1 validated p.A1157 0.283 173 0% 176 14.2% 0 - - - - HMMPfam_Myosin_tail_1 MYH1 4619 genome.wustl.edu 37 17 10398373 10398373 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005963.3 -1 reviewed p.A1781T 1.000 407 0% 317 49.8% 0 - possibly_damaging(0.762) tolerated(0.32) neutral(0.306) HMMPfam_Myosin_tail_1 MYH3 4621 genome.wustl.edu 37 17 10544635 10544635 + Missense_Mutation SNP G G A rs121913618 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002470.2 -1 reviewed p.R672C 1.000 172 0% 125 40.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 DNAH9 1770 genome.wustl.edu 37 17 11583091 11583091 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001372.3 +1 reviewed p.A1124V 0.000 258 0% 182 46.7% 0 - benign(0) tolerated(0.27) neutral(0.034) superfamily_Spectrin repeat DNAH9 1770 genome.wustl.edu 37 17 11687012 11687012 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001372.3 +1 reviewed p.V2590I 0.402 188 0% 112 38.4% 0 - benign(0.388) tolerated(0.14) neutral(0.373) HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases CDRT1 374286 genome.wustl.edu 37 17 15496744 15496744 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006382.3 -1 provisional p.R638Q 1.000 338 0% 316 43.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 TRPV2 51393 genome.wustl.edu 37 17 16327007 16327007 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016113.3 +1 reviewed p.V284M 0.006 42 0% 38 50% 6 0% benign(0.059) tolerated(0.19) neutral(0.054) superfamily_ANK ZNF624 57547 genome.wustl.edu 37 17 16526138 16526138 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020787.2 -1 validated p.R688* 0.980 353 0% 247 50.2% 3 66.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers MPRIP 23164 genome.wustl.edu 37 17 17046881 17046881 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015134.2 +1 validated p.N349 0.003 67 0% 58 58.6% 34 38.2% - - - NULL MPRIP 23164 genome.wustl.edu 37 17 17075165 17075165 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015134.2 +1 validated p.A766V 0.996 64 0% 49 36.7% 55 50.9% probably_damaging(0.998) tolerated(0.1) deleterious(0.761) NULL LOC100289519 100289519 genome.wustl.edu 37 17 17394889 17394889 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343482.1 -1 model p.T54M 0.000 29 0% 20 50% 15 26.6% - - - NULL RAI1 10743 genome.wustl.edu 37 17 17701499 17701499 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030665.3 +1 reviewed p.A1746V 0.000 10 0.000 8 0.500 26 46.1% benign(0) tolerated(0.43) neutral(0.013) NULL RAI1 10743 genome.wustl.edu 37 17 17701660 17701660 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030665.3 +1 reviewed p.D1800N 1.000 19 0.000 7 0.571 20 35% probably_damaging(0.963) tolerated(0.08) deleterious(0.706) NULL SHMT1 6470 genome.wustl.edu 37 17 18250897 18250897 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004169.3 -1 reviewed p.P144 0.000 156 0% 132 50% 62 50% - - - HMMPfam_SHMT,superfamily_PLP-dependent transferases MAPK7 5598 genome.wustl.edu 37 17 19284025 19284025 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002749.3 +1 reviewed p.R168Q 1.000 129 0% 97 46.4% 15 40% unknown(0) deleterious(0) - HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SLC47A1 55244 genome.wustl.edu 37 17 19470509 19470509 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018242.2 +1 validated p.A426V 0.008 234 0% 158 47.5% 2 50% benign(0) tolerated(1) - HMMPfam_MatE SUPT6H 6830 genome.wustl.edu 37 17 27028130 27028130 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003170.3 +1 validated p.R1660W 0.997 281 0.4% 231 51.1% 111 46.8% probably_damaging(0.986) deleterious(0.03) deleterious(0.799) NULL DHRS13 147015 genome.wustl.edu 37 17 27228199 27228199 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144683.3 -1 validated p.R164H 1.000 58 0% 34 41.2% 20 75% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains TP53I13 90313 genome.wustl.edu 37 17 27898960 27898960 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138349.2 +1 provisional p.R133Q 0.001 64 0% 49 44.9% 55 36.3% benign(0.037) tolerated(0.29) neutral(0.031) NULL CORO6 84940 genome.wustl.edu 37 17 27943172 27943172 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032854.3 -1 validated p.L362 1.000 90 0% 54 35.2% 0 - - - - HMMPfam_DUF1900 LRRC37B 114659 genome.wustl.edu 37 17 30348299 30348299 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052888.2 +1 validated p.P45H 0.006 168 0% 106 18.9% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL TMEM98 26022 genome.wustl.edu 37 17 31263423 31263423 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001033504.1 +1 validated p.S124N 0.993 170 0% 116 36.2% 199 48.2% possibly_damaging(0.49) tolerated(0.68) neutral(0.165) NULL UNC45B 146862 genome.wustl.edu 37 17 33475287 33475287 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173167.2 +1 validated p.A2V 0.926 65 0% 40 52.5% 0 - benign(0.424) deleterious(0.03) deleterious(0.502) NULL PIP4K2B 8396 genome.wustl.edu 37 17 36943126 36943126 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003559.4 -1 reviewed p.D69 1.000 397 0% 298 42.6% 19 31.5% - - - HMMSmart_SM00330,superfamily_SAICAR synthase-like MED1 5469 genome.wustl.edu 37 17 37571506 37571506 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004774.3 -1 reviewed p.L462M 1.000 87 0% 84 35.7% 19 52.6% unknown(0) tolerated(0.12) - NULL ERBB2 2064 genome.wustl.edu 37 17 37880220 37880220 + Missense_Mutation SNP T T C rs121913470 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004448.2 +1 reviewed p.L755S 1.000 282 0% 241 44.4% 267 46.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ERBB2 2064 genome.wustl.edu 37 17 37881332 37881332 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004448.2 +1 reviewed p.V842I 1.000 70 0% 56 51.8% 259 47.4% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like) ERBB2 2064 genome.wustl.edu 37 17 37881620 37881620 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004448.2 +1 reviewed p.R897Q 1.000 215 0% 179 49.2% 307 48.2% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) MED24 9862 genome.wustl.edu 37 17 38186053 38186053 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014815.3 -1 reviewed p.P405H 1.000 680 0% 412 42.7% 83 40.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL KRT23 25984 genome.wustl.edu 37 17 39081718 39081718 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015515.3 -1 reviewed p.R344C 0.339 511 0% 382 50.5% 24 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament JUP 3728 genome.wustl.edu 37 17 39913718 39913718 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002230.2 -1 reviewed p.S665 0.114 153 0% 102 37.3% 558 47.4% - - - NULL ACLY 47 genome.wustl.edu 37 17 40024982 40024982 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001096.2 -1 reviewed p.G1064E 1.000 349 0% 273 42.1% 154 50.6% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Citrate_synthase_core DHX58 79132 genome.wustl.edu 37 17 40253879 40253879 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024119.2 -1 validated p.R646Q 0.006 78 0% 59 37.3% 16 43.7% possibly_damaging(0.594) deleterious(0.02) deleterious(0.588) NULL DHX58 79132 genome.wustl.edu 37 17 40259722 40259722 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024119.2 -1 validated p.A299 0.616 59 0% 42 38.1% 15 20% - - - superfamily_SSF52540 STAT5A 6776 genome.wustl.edu 37 17 40457694 40457694 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003152.3 +1 reviewed p.L483 1.000 92 0% 39 17.9% 5 0% - - - superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind ATP6V0A1 535 genome.wustl.edu 37 17 40630566 40630566 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130020.1 +1 reviewed p.R205* 1.000 175 0% 155 14.8% 14 0% - - - HMMPfam_V_ATPase_I VAT1 10493 genome.wustl.edu 37 17 41168514 41168514 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006373.3 -1 validated p.R303Q 1.000 77 0% 48 41.7% 203 44.3% possibly_damaging(0.94) deleterious(0.02) deleterious(0.768) superfamily_NAD(P)-binding Rossmann-fold domains BRCA1 672 genome.wustl.edu 37 17 41244935 41244935 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007294.3 -1 reviewed p.P871 0.991 124 0% 123 40.7% 7 28.5% - - - NULL HDAC5 10014 genome.wustl.edu 37 17 42169645 42169645 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001015053.1 -1 reviewed p.S310 0.843 191 0% 126 85.7% 21 100% - - - NULL GPATCH8 23131 genome.wustl.edu 37 17 42478300 42478300 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001002909.1 -1 validated p.R382Q 1.000 129 0% 81 95.1% 12 100% unknown(0) tolerated(0.36) - NULL GPATCH8 23131 genome.wustl.edu 37 17 42483365 42483365 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001002909.1 -1 validated p.R183C 1.000 177 0% 112 95.5% 13 84.6% unknown(0) deleterious(0.01) - NULL FZD2 2535 genome.wustl.edu 37 17 42635789 42635789 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001466.2 +1 reviewed p.R245C 1.000 50 0% 30 96.7% 27 100% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Frizzled DBF4B 80174 genome.wustl.edu 37 17 42818788 42818788 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145663.1 +1 validated p.A266 0.001 223 0% 165 15.8% 12 25% - - - NULL KANSL1 284058 genome.wustl.edu 37 17 44111532 44111532 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015443.2 -1 validated p.T887 0.743 364 0% 272 94.9% 35 100% - - - NULL NPEPPS 9520 genome.wustl.edu 37 17 45663518 45663518 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006310.3 +1 reviewed p.A285V 1.000 208 0.5% 133 13.5% 36 22.2% possibly_damaging(0.943) deleterious(0) deleterious(0.832) HMMPfam_Peptidase_M1,superfamily_SSF55486 IGF2BP1 10642 genome.wustl.edu 37 17 47122409 47122409 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006546.3 +1 reviewed p.P459 0.985 363 0% 313 47.3% 0 - - - - HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) ZNF652 22834 genome.wustl.edu 37 17 47390147 47390147 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145365.1 -1 validated p.V321I 1.000 210 0% 155 16.1% 2 50% probably_damaging(0.99) tolerated(0.45) neutral(0.454) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SPOP 8405 genome.wustl.edu 37 17 47696461 47696461 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007226.1 -1 reviewed p.R121Q 1.000 187 0% 141 93.6% 28 100% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like KAT7 11143 genome.wustl.edu 37 17 47899044 47899044 + Missense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007067.3 +1 provisional p.K426N 1.000 278 0% 236 91.5% 24 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat) COL1A1 1277 genome.wustl.edu 37 17 48272099 48272099 + Missense_Mutation SNP C C T rs72648344 TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000088.3 -1 reviewed p.G482R 1.000 35 0% 26 92.3% 140 0.7% unknown(0) deleterious(0) - HMMPfam_Collagen MYCBPAP 84073 genome.wustl.edu 37 17 48604688 48604688 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032133.4 +1 validated p.A780V 0.951 73 0% 65 55.4% 0 - probably_damaging(0.978) tolerated(0.54) neutral(0.428) NULL CACNA1G 8913 genome.wustl.edu 37 17 48677100 48677100 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018896.3 +1 validated p.R1190 0.325 49 0% 32 100% 0 - - - - NULL MSI2 124540 genome.wustl.edu 37 17 55339543 55339543 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138962.2 +1 reviewed p.A101V 1.000 417 0% 330 50.6% 27 44.4% benign(0.054) tolerated(0.1) neutral(0.290) NULL EPX 8288 genome.wustl.edu 37 17 56274530 56274530 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000502.4 +1 reviewed p.N344 0.092 166 0% 110 48.2% 0 - - - - HMMPfam_An_peroxidase,superfamily_Peroxidase_super EPX 8288 genome.wustl.edu 37 17 56277639 56277639 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000502.4 +1 reviewed p.R531S 0.931 90 0% 55 30.9% 0 - possibly_damaging(0.927) tolerated(0.52) neutral(0.384) HMMPfam_An_peroxidase,superfamily_Peroxidase_super CLTC 1213 genome.wustl.edu 37 17 57760463 57760463 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004859.3 +1 reviewed p.G1294V 1.000 309 0.3% 212 50% 196 52% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat PPM1D 8493 genome.wustl.edu 37 17 58734161 58734161 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003620.2 +1 reviewed p.C407R 0.001 154 0% 119 26.1% 31 38.7% benign(0.027) deleterious(0) neutral(0.446) NULL PSMC5 5705 genome.wustl.edu 37 17 61907825 61907825 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002805.4 +1 reviewed p.P172 0.999 120 0% 95 14.7% 225 14.2% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ERN1 2081 genome.wustl.edu 37 17 62130262 62130262 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001433.3 -1 reviewed p.D711N 1.000 128 0% 104 52.9% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ERN1 2081 genome.wustl.edu 37 17 62144103 62144103 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001433.3 -1 reviewed p.S257F 1.000 116 0% 91 51.6% 0 - probably_damaging(0.982) tolerated(0.07) deleterious(0.746) NULL HELZ 9931 genome.wustl.edu 37 17 65184512 65184512 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014877.3 -1 validated p.R362H 1.000 146 0% 111 21.6% 6 16.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL KIF19 124602 genome.wustl.edu 37 17 72342563 72342563 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153209.3 +1 validated p.R275H 1.000 77 0% 50 92% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases USH1G 124590 genome.wustl.edu 37 17 72916503 72916503 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173477.2 -1 reviewed p.A143V 1.000 46 0% 31 93.5% 0 - possibly_damaging(0.642) deleterious(0.04) deleterious(0.574) superfamily_ANK TSEN54 283989 genome.wustl.edu 37 17 73518243 73518243 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207346.2 +1 reviewed p.Q361* 0.000 16 0% 17 29.4% 52 5.7% - - - NULL TSEN54 283989 genome.wustl.edu 37 17 73518349 73518349 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207346.2 +1 reviewed p.R396Q 0.000 2 0.000 5 1.000 43 95.3% probably_damaging(0.998) tolerated(0.17) deleterious(0.533) NULL ITGB4 3691 genome.wustl.edu 37 17 73746787 73746787 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000213.3 +1 reviewed p.S1167 0.001 27 0% 27 29.6% 157 47.7% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MRPL38 64978 genome.wustl.edu 37 17 73895358 73895358 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032478.3 -1 reviewed p.R296Q 0.958 98 0% 59 50.8% 129 53.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PBP,superfamily_PEBP UBE2O 63893 genome.wustl.edu 37 17 74392354 74392354 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022066.3 -1 validated p.K888N 1.000 140 0% 92 45.7% 22 40.9% possibly_damaging(0.707) tolerated(0.69) neutral(0.257) NULL DNAH17 8632 genome.wustl.edu 37 17 76548779 76548779 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000389840 -1 known p.G763C 1.000 267 0.4% 167 20.4% 0 - possibly_damaging(0.77) deleterious(0.04) deleterious(0.635) HMMPfam_DHC_N1 GAA 2548 genome.wustl.edu 37 17 78087028 78087028 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000152.3 +1 reviewed p.P684 0.002 57 0% 41 41.5% 61 49.1% - - - HMMPfam_Glyco_hydro_31 CARD14 79092 genome.wustl.edu 37 17 78162327 78162327 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024110.2 +1 reviewed p.S276L 0.816 106 0% 77 49.4% 0 - probably_damaging(0.995) tolerated(0.06) deleterious(0.780) NULL SGSH 6448 genome.wustl.edu 37 17 78185891 78185891 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000199.3 -1 reviewed p.E310K 1.000 73 0% 50 52% 40 50% benign(0) tolerated(0.83) neutral(0.001) HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core LOC388428 388428 genome.wustl.edu 37 17 79152785 79152785 + RNA SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NR_027255.1 +1 validated NULL 0.213 53 0% 48 60.4% 0 - - - - - BAHCC1 57597 genome.wustl.edu 37 17 79422325 79422325 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000436173 +1 known p.A1493V 0.112 38 0% 14 50% 7 28.5% possibly_damaging(0.908) deleterious(0.02) deleterious(0.744) NULL TSPAN10 83882 genome.wustl.edu 37 17 79612402 79612402 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000328585 +1 known p.G141C 1.000 57 0% 37 24.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Tetraspannin,PatternScan_TM4_1 C17orf90 339229 genome.wustl.edu 37 17 79632418 79632418 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001039842.1 -1 predicted p.P86L 0.964 37 0% 30 96.7% 93 95.6% benign(0.022) tolerated(0.17) neutral(0.060) NULL GCGR 2642 genome.wustl.edu 37 17 79771366 79771366 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000400723 +1 known p.R412Q 0.000 33 0% 21 57.1% 0 - benign(0.098) tolerated(0.32) neutral(0.032) superfamily_SSF81321 P4HB 5034 genome.wustl.edu 37 17 79805125 79805125 + Silent SNP G G A rs142657365 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000439918 -1 known p.R28* 0.000 222 0% 154 48.7% 389 49.6% - - - superfamily_Thioredoxin-like ALYREF 10189 genome.wustl.edu 37 17 79847171 79847171 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005782.3 -1 reviewed p.A135V 0.993 207 0% 146 46.6% 383 45.1% possibly_damaging(0.867) deleterious(0) deleterious(0.781) HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 PYCR1 5831 genome.wustl.edu 37 17 79892203 79892203 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006907.2 -1 reviewed p.R266W 0.995 37 0% 33 100% 57 98.2% possibly_damaging(0.454) deleterious(0.02) deleterious(0.531) NULL STRA13 201254 genome.wustl.edu 37 17 79977781 79977781 + Missense_Mutation SNP A A C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144998.2 -1 validated p.L14R 1.000 40 0% 23 60.9% 56 28.5% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_DUF2008 DUS1L 64118 genome.wustl.edu 37 17 80022090 80022090 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022156.3 -1 validated p.E86D 0.950 87 0% 62 41.9% 121 42.1% benign(0.004) tolerated(0.91) - HMMPfam_Dus,superfamily_SSF51395 HEXDC 284004 genome.wustl.edu 37 17 80398967 80398967 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173620.2 +1 validated p.S359 0.000 102 0% 59 25.4% 11 81.8% - - - NULL NDC80 10403 genome.wustl.edu 37 18 2573022 2573022 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006101.2 +1 validated p.R13H 1.000 201 0% 148 25.7% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ndc80_HEC SMCHD1 23347 genome.wustl.edu 37 18 2694682 2694682 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015295.2 +1 validated p.R344Q 1.000 171 0% 138 46.4% 6 33.3% probably_damaging(1) tolerated(0.25) deleterious(0.537) NULL EMILIN2 84034 genome.wustl.edu 37 18 2891856 2891856 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032048.2 +1 validated p.R577 0.000 93 0% 83 44.6% 8 50% - - - NULL EMILIN2 84034 genome.wustl.edu 37 18 2909723 2909723 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032048.2 +1 validated p.A910 0.023 211 0% 148 43.2% 7 14.2% - - - HMMPfam_C1q,superfamily_TNF_like SLC35G4 646000 genome.wustl.edu 37 18 11644392 11644392 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000424015 +1 known p.Q195* 0.217 113 0% 68 27.9% 0 - - - - NULL CIDEA 1149 genome.wustl.edu 37 18 12264409 12264409 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198289.2 +1 reviewed p.N130S 1.000 200 0% 183 11.5% 0 - probably_damaging(0.999) tolerated(0.05) deleterious(0.836) HMMPfam_CIDE-N,HMMSmart_CAD,superfamily_SSF54277 GREB1L 80000 genome.wustl.edu 37 18 19034409 19034409 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142966.1 +1 provisional p.A689 0.161 205 0% 171 55.6% 0 - - - - PatternScan_ASP_PROTEASE TTC39C 125488 genome.wustl.edu 37 18 21708875 21708875 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135993.1 +1 validated p.S482 0.988 648 0.2% 493 48.5% 20 35% - - - HMMPfam_Deme6,superfamily_TPR-like ZNF521 25925 genome.wustl.edu 37 18 22804549 22804549 + Silent SNP G G A rs34380309 byCluster;byFrequency;by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015461.2 -1 validated p.P1111 0.998 230 0% 156 43.6% 3 0% - - - NULL DSG4 147409 genome.wustl.edu 37 18 28979343 28979343 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001134453.1 +1 reviewed p.V372M 0.988 295 0% 209 43.5% 1 100% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin FAM59A 64762 genome.wustl.edu 37 18 29867059 29867059 + Nonsense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022751.1 -1 provisional p.G501* 0.574 135 0% 89 48.3% 0 - - - - NULL ZNF24 7572 genome.wustl.edu 37 18 32917479 32917479 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006965.2 -1 validated p.G275E 1.000 202 0% 178 41.6% 31 51.6% possibly_damaging(0.884) deleterious(0) deleterious(0.789) superfamily_SSF57667 RPRD1A 55197 genome.wustl.edu 37 18 33606960 33606960 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018170.3 -1 provisional p.A231V 1.000 182 0.5% 109 43.1% 52 30.7% benign(0.171) deleterious(0.02) neutral(0.399) NULL FHOD3 80206 genome.wustl.edu 37 18 34289279 34289279 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025135.2 +1 validated p.S645P 1.000 65 0% 38 23.7% 0 - probably_damaging(0.996) tolerated(0.1) deleterious(0.748) NULL LOXHD1 125336 genome.wustl.edu 37 18 44140269 44140269 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000441551 -1 known p.R927* 0.017 166 0% 105 59% 0 - - - - NULL PIAS2 9063 genome.wustl.edu 37 18 44470843 44470843 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004671.2 -1 validated p.R67* 0.830 82 1.2% 60 45% 20 60% - - - NULL TCEB3B 51224 genome.wustl.edu 37 18 44560610 44560610 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016427.2 -1 reviewed p.N342 0.000 87 0% 67 40.3% 0 - - - - NULL HDHD2 84064 genome.wustl.edu 37 18 44641547 44641547 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032124.4 -1 validated p.R190W 1.000 146 0% 124 45.2% 46 56.5% probably_damaging(0.988) deleterious(0.02) deleterious(0.821) HMMPfam_Hydrolase,superfamily_HAD-like RPL17 6139 genome.wustl.edu 37 18 47015859 47015859 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000985.3 -1 reviewed p.R126H 1.000 141 0% 160 57.5% 682 0% benign(0.013) deleterious(0) neutral(0.445) HMMPfam_Ribosomal_L22,superfamily_Ribosomal protein L22,PatternScan_RIBOSOMAL_L22 LIPG 9388 genome.wustl.edu 37 18 47095862 47095862 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006033.2 +1 reviewed p.A172V 1.000 97 0% 72 56.9% 11 72.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases MEX3C 51320 genome.wustl.edu 37 18 48703280 48703280 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016626.4 -1 reviewed p.S474N 1.000 159 0% 102 46.1% 66 60.6% benign(0.205) tolerated(0.3) neutral(0.049) NULL DCC 1630 genome.wustl.edu 37 18 50994318 50994318 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005215.3 +1 reviewed p.A1225D 1.000 138 0% 85 42.4% 0 - probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_Neogenin_C ZNF532 55205 genome.wustl.edu 37 18 56585747 56585747 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018181.4 +1 validated p.G76 0.001 164 0% 104 43.3% 16 50% - - - NULL ZNF532 55205 genome.wustl.edu 37 18 56646391 56646391 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018181.4 +1 validated p.Y1085 0.997 86 0% 69 29% 13 0% - - - HMMSmart_ZnF_C2H2 SOCS6 9306 genome.wustl.edu 37 18 67992142 67992142 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004232.3 +1 reviewed p.R80W 1.000 135 0% 79 38% 15 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM69C 125704 genome.wustl.edu 37 18 72103914 72103914 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001044369.2 -1 validated p.P361H 0.000 57 0% 47 29.8% 1 0% possibly_damaging(0.7) tolerated(0.1) deleterious(0.538) NULL ZNF516 9658 genome.wustl.edu 37 18 74091425 74091425 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000443185 -1 known p.P882H 0.001 30 0% 18 50% 41 78% possibly_damaging(0.684) deleterious(0) deleterious(0.689) NULL KCNG2 26251 genome.wustl.edu 37 18 77659090 77659090 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012283.1 +1 reviewed p.C225 0.998 40 0% 17 47.1% 0 - - - - HMMPfam_Ion_trans,superfamily_SSF81324 SHC2 25759 genome.wustl.edu 37 19 434832 434832 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012435.2 -1 validated p.D329 0.682 46 0% 26 26.9% 3 33.3% - - - NULL BSG 682 genome.wustl.edu 37 19 580728 580728 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001728.2 +1 reviewed p.S246 0.001 68 0% 47 10.6% 1841 14.1% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin POLRMT 5442 genome.wustl.edu 37 19 619263 619263 + Frame_Shift_Del DEL G G - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005035.3 -1 reviewed p.R1034fs 0.025 - - - - - - - - - HMMPfam_RNA_pol,superfamily_SSF56672 POLRMT 5442 genome.wustl.edu 37 19 624851 624851 + Silent SNP G G A rs189292153 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005035.3 -1 reviewed p.A336 0.000 58 0% 40 60% 35 20% - - - NULL C19orf21 126353 genome.wustl.edu 37 19 757198 757198 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173481.2 +1 predicted p.S84 0.706 29 0% 11 54.5% 86 52.3% - - - NULL PTBP1 5725 genome.wustl.edu 37 19 805011 805011 + Splice_Site SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002819.4 +1 reviewed e8-2 0.977 73 0% 41 41.5% 3 100% - - - - SBNO2 22904 genome.wustl.edu 37 19 1122968 1122968 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014963.2 -1 validated p.T235 0.989 163 0% 92 26.1% 45 11.1% - - - NULL MIDN 90007 genome.wustl.edu 37 19 1254454 1254454 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_177401.4 +1 validated p.A225T 0.983 62 0% 37 59.5% 227 42.2% benign(0.031) tolerated(0.52) neutral(0.010) NULL TCF3 6929 genome.wustl.edu 37 19 1621856 1621856 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003200.2 -1 validated p.S312 0.008 13 0.000 9 0.444 155 49.6% - - - NULL REXO1 57455 genome.wustl.edu 37 19 1819118 1819118 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020695.3 -1 validated p.R888H 0.828 18 0% 22 40.9% 34 41.1% probably_damaging(0.96) tolerated(0.36) neutral(0.423) NULL KLF16 83855 genome.wustl.edu 37 19 1854498 1854498 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031918.3 -1 validated p.A240V 0.561 17 0% 16 50% 7 57.1% unknown(0) tolerated(0.12) - NULL GNG7 2788 genome.wustl.edu 37 19 2515097 2515097 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_052847.2 -1 validated p.R44W 0.999 106 0% 74 50% 0 - probably_damaging(0.982) deleterious(0.03) deleterious(0.791) HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like TLE2 7089 genome.wustl.edu 37 19 3019708 3019708 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003260.4 -1 validated p.S120G 1.000 42 0% 24 50% 21 38% benign(0.001) tolerated(0.12) neutral(0.261) HMMPfam_TLE_N FSD1 79187 genome.wustl.edu 37 19 4317277 4317277 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024333.2 +1 reviewed p.A267S 1.000 152 0% 94 52.1% 0 - probably_damaging(0.999) tolerated(0.62) deleterious(0.494) superfamily_FN_III-like UBXN6 80700 genome.wustl.edu 37 19 4446053 4446053 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025241.2 -1 validated p.C398Y 1.000 31 0% 20 30% 203 13.7% probably_damaging(0.998) tolerated(0.39) deleterious(0.490) HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like UBXN6 80700 genome.wustl.edu 37 19 4454056 4454056 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_025241.2 -1 validated p.A40T 0.041 251 0.4% 144 47.2% 75 52% possibly_damaging(0.449) tolerated(0.57) neutral(0.153) NULL KDM4B 23030 genome.wustl.edu 37 19 5077430 5077430 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015015.2 +1 validated p.M243I 1.000 58 0% 41 43.9% 29 41.3% possibly_damaging(0.548) deleterious(0.01) deleterious(0.592) HMMSmart_SM00558,HMMPfam_JmjC PTPRS 5802 genome.wustl.edu 37 19 5210566 5210566 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002850.3 -1 reviewed p.R1801C 1.000 160 0% 118 47.5% 152 49.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II PTPRS 5802 genome.wustl.edu 37 19 5240289 5240289 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002850.3 -1 reviewed p.T542M 0.399 30 0% 19 31.6% 60 50% benign(0.001) tolerated(0.11) neutral(0.272) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III RFX2 5990 genome.wustl.edu 37 19 6002804 6002804 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000635.3 -1 reviewed p.A526 0.107 88 0% 48 58.3% 3 100% - - - NULL SLC25A23 79085 genome.wustl.edu 37 19 6442025 6442025 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024103.2 -1 validated p.Y456 1.000 55 0% 29 48.3% 75 33.3% - - - superfamily_Mitochondrial carrier,HMMPfam_Mito_carr C3 718 genome.wustl.edu 37 19 6707176 6707176 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000064.2 -1 reviewed p.A719V 0.000 21 0% 27 55.6% 59 55.9% benign(0.092) tolerated(0.27) neutral(0.041) HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,superfamily_Anaphylotoxins (complement system) INSR 3643 genome.wustl.edu 37 19 7125350 7125350 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000208.2 -1 reviewed p.R1068W 1.000 79 0% 59 49.2% 8 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) ARHGEF18 23370 genome.wustl.edu 37 19 7505299 7505299 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130955.1 +1 reviewed p.G158D 1.000 39 0% 24 37.5% 16 12.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL MCOLN1 57192 genome.wustl.edu 37 19 7593142 7593142 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020533.2 +1 reviewed p.H292 0.707 71 0% 44 40.9% 24 50% - - - NULL PNPLA6 10908 genome.wustl.edu 37 19 7614881 7614881 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006702.4 +1 reviewed p.A527V 0.995 71 0% 42 42.9% 40 45% benign(0) tolerated(0.7) neutral(0.002) HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding CAMSAP3 57662 genome.wustl.edu 37 19 7680162 7680162 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080429.2 +1 validated p.Q949K 1.000 41 0% 37 21.6% 15 20% possibly_damaging(0.794) tolerated(0.28) neutral(0.330) NULL STXBP2 6813 genome.wustl.edu 37 19 7707169 7707169 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006949.2 +1 reviewed p.T248 0.810 77 0% 54 42.6% 116 49.1% - - - HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins HNRNPM 4670 genome.wustl.edu 37 19 8550657 8550657 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005968.3 +1 validated p.R449C 1.000 33 0% 19 52.6% 400 53.7% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TMEM205 374882 genome.wustl.edu 37 19 11453601 11453601 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145416.1 -1 validated p.R154C 0.607 143 0% 94 37.2% 230 49.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL CNN1 1264 genome.wustl.edu 37 19 11660463 11660463 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001299.4 +1 validated p.S249 1.000 36 0% 19 42.1% 0 - - - - HMMPfam_Calponin,PatternScan_CALPONIN_1 ZNF823 55552 genome.wustl.edu 37 19 11833230 11833230 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080493.2 -1 validated p.S373 0.000 322 0% 252 47.6% 8 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF700 90592 genome.wustl.edu 37 19 12060967 12060967 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144566.1 +1 provisional p.G710R 1.000 159 0% 106 49.1% 13 53.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF564 163050 genome.wustl.edu 37 19 12637528 12637528 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144976.3 -1 validated p.R465Q 0.000 312 0.6% 205 44.9% 14 35.7% possibly_damaging(0.922) tolerated(1) neutral(0.371) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DHPS 1725 genome.wustl.edu 37 19 12791010 12791010 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001930.2 -1 reviewed p.R113C 1.000 316 0% 238 40.8% 102 42.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain ASNA1 439 genome.wustl.edu 37 19 12856259 12856259 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004317.2 +1 validated p.S126 1.000 56 0% 45 53.3% 129 47.2% - - - HMMPfam_ArsA_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases RFX1 5989 genome.wustl.edu 37 19 14076450 14076450 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002918.4 -1 validated p.R701W 1.000 91 0% 57 40.4% 32 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL LPHN1 22859 genome.wustl.edu 37 19 14272342 14272342 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001008701.2 -1 reviewed p.R436Q 1.000 123 0.8% 94 46.8% 26 46.1% benign(0.005) tolerated(0.05) neutral(0.345) NULL CD97 976 genome.wustl.edu 37 19 14499567 14499567 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_078481.2 +1 reviewed p.R43C 0.002 298 0% 188 46.8% 39 46.1% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) HMMSmart_SM00181 BRD4 23476 genome.wustl.edu 37 19 15365050 15365050 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_058243.2 -1 reviewed p.G691S 0.999 79 0% 46 56.5% 49 42.8% possibly_damaging(0.948) deleterious(0.04) deleterious(0.740) NULL WIZ 58525 genome.wustl.edu 37 19 15538137 15538137 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021241.2 -1 validated p.P246L 0.323 32 0% 35 60% 65 35.3% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) NULL OR10H2 26538 genome.wustl.edu 37 19 15839202 15839202 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013939.2 +1 validated p.V117I 0.868 378 0.3% 238 40.3% 0 - benign(0.006) tolerated(0.1) neutral(0.286) HMMPfam_7tm_1,superfamily_SSF81321 OR10H1 26539 genome.wustl.edu 37 19 15918845 15918845 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013940.2 -1 validated p.M1I 0.229 250 0% 159 49.7% 0 - benign(0.183) deleterious(0) neutral(0.462) superfamily_SSF81321 CYP4F11 57834 genome.wustl.edu 37 19 16038149 16038149 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128932.1 -1 reviewed p.G133V 1.000 174 0% 133 41.4% 1 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_p450,superfamily_Cytochrome P450 CALR3 125972 genome.wustl.edu 37 19 16594786 16594786 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145046.3 -1 validated p.P211 0.000 477 0% 377 47.2% 0 - - - - HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl,superfamily_Calret_calnex_P NWD1 284434 genome.wustl.edu 37 19 16910748 16910748 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001007525.2 +1 validated p.G1036R 0.250 57 0% 48 45.8% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00320,superfamily_WD40 repeat-like CPAMD8 27151 genome.wustl.edu 37 19 17004057 17004057 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000443236 -1 known p.R1898Q 0.010 64 0% 40 52.5% 1 0% - - - NULL SLC27A1 376497 genome.wustl.edu 37 19 17615412 17615412 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198580.1 +1 provisional p.F644 0.001 54 0% 45 46.7% 41 48.7% - - - NULL B3GNT3 10331 genome.wustl.edu 37 19 17922515 17922515 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014256.3 +1 reviewed p.V235M 0.186 100 0% 74 47.3% 48 35.4% possibly_damaging(0.78) deleterious(0.01) deleterious(0.697) HMMPfam_Galactosyl_T MAST3 23031 genome.wustl.edu 37 19 18254617 18254617 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015016.1 +1 validated p.S766L 0.000 46 0% 45 33.3% 5 60% benign(0.039) tolerated(0.2) neutral(0.051) NULL KIAA1683 80726 genome.wustl.edu 37 19 18376172 18376172 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145304.1 -1 validated p.A726 0.000 150 0% 111 52.3% 4 50% - - - NULL DDX49 54555 genome.wustl.edu 37 19 19038784 19038784 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_019070.4 +1 validated p.A401V 0.777 169 0% 106 53.8% 113 41.5% benign(0.056) tolerated(0.09) neutral(0.300) superfamily_SSF52540 TMEM161A 54929 genome.wustl.edu 37 19 19230881 19230881 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017814.1 -1 provisional p.R433Q 0.001 28 0% 16 50% 54 50% benign(0.002) tolerated(1) - HMMPfam_Tmemb_161AB GATAD2A 54815 genome.wustl.edu 37 19 19576391 19576391 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017660.3 +1 provisional p.G79 0.000 53 0% 42 45.2% 73 50.6% - - - NULL ZNF101 94039 genome.wustl.edu 37 19 19790113 19790113 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033204.2 +1 provisional p.S105 0.001 115 0% 118 46.6% 8 50% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF93 81931 genome.wustl.edu 37 19 20044084 20044084 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031218.3 +1 validated p.G107E 0.280 303 0% 240 44.2% 12 41.6% benign(0.182) tolerated(0.41) neutral(0.032) NULL TSHZ3 57616 genome.wustl.edu 37 19 31768987 31768987 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020856.2 -1 validated p.T571M 0.794 178 0% 110 49.1% 0 - possibly_damaging(0.91) deleterious(0.03) deleterious(0.727) NULL ANKRD27 84079 genome.wustl.edu 37 19 33098636 33098636 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032139.2 -1 validated p.I760V 0.004 33 0% 29 41.4% 30 46.6% benign(0) tolerated(1) - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK CEP89 84902 genome.wustl.edu 37 19 33409243 33409243 + Missense_Mutation SNP C C T rs182600896 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032816.3 -1 validated p.R424H 0.005 153 0% 132 47.7% 9 33.3% benign(0.003) tolerated(0.22) neutral(0.042) NULL LRP3 4037 genome.wustl.edu 37 19 33693792 33693792 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002333.3 +1 validated p.R54C 0.993 45 0% 32 43.8% 65 40% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB LRP3 4037 genome.wustl.edu 37 19 33697585 33697585 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002333.3 +1 validated p.I557 0.553 116 0% 65 49.2% 125 45.6% - - - NULL PEPD 5184 genome.wustl.edu 37 19 33902607 33902607 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000285.3 -1 reviewed p.N263 0.985 65 0% 47 40.4% 69 57.9% - - - HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core CHST8 64377 genome.wustl.edu 37 19 34263234 34263234 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001127895.1 +1 validated p.V181M 1.000 20 0.000 7 0.714 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Sulfotransfer_2 GPI 2821 genome.wustl.edu 37 19 34887543 34887543 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000175.3 +1 reviewed p.R417Q 1.000 74 0% 62 43.5% 531 44% benign(0.031) tolerated(0.14) neutral(0.251) HMMPfam_PGI,superfamily_SSF53697 PDCD2L 84306 genome.wustl.edu 37 19 34912478 34912478 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032346.1 +1 provisional p.T284 0.004 140 0% 115 50.4% 25 52% - - - HMMPfam_PDCD2_C LSR 51599 genome.wustl.edu 37 19 35758278 35758279 + In_Frame_Ins INS - - GGG novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_205834.2 +1 validated p.520in_frame_insG 0.995:0.996 - - - - - - - - - NULL FFAR3 2865 genome.wustl.edu 37 19 35849825 35849825 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005304.3 +1 validated p.S11 0.000 205 1% 151 29.1% 0 - - - - NULL GAPDHS 26330 genome.wustl.edu 37 19 36027728 36027728 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014364.4 +1 reviewed p.P27 0.224 289 0% 255 47.8% 0 - - - - NULL TMEM147 10430 genome.wustl.edu 37 19 36038233 36038233 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032635.2 +1 provisional p.V187I 1.000 116 0% 61 39.3% 289 51.2% benign(0.002) tolerated(0.4) neutral(0.016) NULL NFKBID 84807 genome.wustl.edu 37 19 36381327 36381327 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_139239.1 -1 provisional p.Q224 0.993 64 1.6% 44 40.9% 8 25% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat NFKBID 84807 genome.wustl.edu 37 19 36387012 36387012 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_139239.1 -1 provisional p.T159M 1.000 266 0% 187 50.3% 3 0% possibly_damaging(0.705) tolerated(0.22) neutral(0.296) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat LRFN3 79414 genome.wustl.edu 37 19 36430892 36430892 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024509.1 +1 provisional p.H189N 1.000 22 0.000 9 0.778 31 41.9% probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_SSF52058 YIF1B 90522 genome.wustl.edu 37 19 38798271 38798271 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001039672.2 -1 validated p.D221N 1.000 98 0% 62 46.8% 82 43.9% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) HMMPfam_YIF1 RYR1 6261 genome.wustl.edu 37 19 38939101 38939101 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000540.2 +1 reviewed p.A303T 1.000 46 0% 20 35% 0 - benign(0.02) - - HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472 RYR1 6261 genome.wustl.edu 37 19 38951182 38951182 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000540.2 +1 reviewed p.R843H 1.000 42 0% 17 47.1% 0 - benign(0.431) - - NULL RYR1 6261 genome.wustl.edu 37 19 38993258 38993258 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000540.2 +1 reviewed p.A2576T 1.000 35 0% 29 51.7% 0 - probably_damaging(0.967) - - NULL RYR1 6261 genome.wustl.edu 37 19 39034442 39034442 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000540.2 +1 reviewed p.A3980V 1.000 128 0% 94 40.4% 0 - benign(0.054) - - HMMPfam_RIH_assoc HNRNPL 3191 genome.wustl.edu 37 19 39334654 39334654 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001533.2 -1 reviewed p.Y267 0.967 222 0% 183 44.3% 400 49% - - - superfamily_SSF54928 FBXO17 115290 genome.wustl.edu 37 19 39435614 39435614 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_148169.1 -1 reviewed p.R239* 0.996 87 0% 57 40.4% 0 - - - - HMMPfam_FBA,superfamily_Galactose-binding domain-like PLEKHG2 64857 genome.wustl.edu 37 19 39906077 39906077 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000205135 +1 known p.A56V 1.000 80 0% 44 34.1% 15 0% - - - HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) PLEKHG2 64857 genome.wustl.edu 37 19 39912757 39912757 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000205135 +1 known p.T370M 0.998 96 0% 63 57.1% 20 60% - - - NULL LOC100289588 100289588 genome.wustl.edu 37 19 40362824 40362824 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343681.1 +1 model p.R98C 0.001 20 0% 11 72.7% 37 16.2% - - - NULL FCGBP 8857 genome.wustl.edu 37 19 40377028 40377028 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003890.2 -1 validated p.D3798 0.001 166 0% 91 26.4% 14 0% - - - HMMPfam_VWD,HMMSmart_VWD FCGBP 8857 genome.wustl.edu 37 19 40421286 40421286 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003890.2 -1 validated p.R879C 0.003 45 0% 28 50% 1 0% probably_damaging(1) tolerated(0.13) deleterious(0.752) HMMPfam_VWD,HMMSmart_VWD PSMC4 5704 genome.wustl.edu 37 19 40486259 40486259 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006503.2 +1 reviewed p.R329C 1.000 200 0% 131 38.2% 164 44.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF780B 163131 genome.wustl.edu 37 19 40554703 40554703 + Nonsense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001005851.2 -1 validated p.G4* 0.995 514 0% 395 43.3% 2 0% - - - superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF780A 284323 genome.wustl.edu 37 19 40580866 40580866 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001142577.1 -1 validated p.H496Y 1.000 233 0% 171 49.7% 8 62.5% possibly_damaging(0.837) deleterious(0) deleterious(0.764) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers C19orf47 126526 genome.wustl.edu 37 19 40842027 40842027 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178830.2 -1 predicted p.V41A 1.000 153 0% 99 49.5% 23 56.5% possibly_damaging(0.572) deleterious(0) deleterious(0.641) NULL SPTBN4 57731 genome.wustl.edu 37 19 41060521 41060521 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020971.2 +1 reviewed p.R1685W 1.000 26 0% 18 61.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SHKBP1 92799 genome.wustl.edu 37 19 41089388 41089388 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138392.3 +1 validated p.V349M 0.265 66 1.5% 37 56.8% 60 46.6% possibly_damaging(0.801) deleterious(0) deleterious(0.746) superfamily_WD40 repeat-like SHKBP1 92799 genome.wustl.edu 37 19 41089541 41089541 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138392.3 +1 validated p.N361 0.787 155 0% 75 41.3% 79 45.5% - - - superfamily_WD40 repeat-like LTBP4 8425 genome.wustl.edu 37 19 41128310 41128310 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042544.1 +1 reviewed p.R1141H 0.064 21 0% 12 33.3% 202 47.5% - - - NULL NUMBL 9253 genome.wustl.edu 37 19 41183256 41183256 + Missense_Mutation SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004756.3 -1 validated p.K204R 1.000 28 0% 14 57.1% 8 75% possibly_damaging(0.772) tolerated(0.07) deleterious(0.606) HMMSmart_PTB CYP2A6 1548 genome.wustl.edu 37 19 41355831 41355831 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000762.5 -1 reviewed p.V79M 0.975 244 0% 190 41.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_p450,superfamily_Cytochrome P450 CYP2S1 29785 genome.wustl.edu 37 19 41712380 41712380 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030622.6 +1 reviewed p.T501M 0.000 125 0% 101 53.5% 0 - unknown(0) - - NULL HNRNPUL1 11100 genome.wustl.edu 37 19 41800572 41800572 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007040.3 +1 reviewed p.R500H 1.000 179 0% 109 45% 232 47.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_P-loop containing nucleoside triphosphate hydrolases BCKDHA 593 genome.wustl.edu 37 19 41925187 41925187 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000709.3 +1 reviewed p.T211M 1.000 153 0% 112 45.5% 63 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_E1_dh,superfamily_SSF52518 CEACAM5 1048 genome.wustl.edu 37 19 42218963 42218963 + Silent SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000398599 +1 known p.L163M 0.001 301 0% 206 45.1% 2 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin CEACAM5 1048 genome.wustl.edu 37 19 42224931 42224931 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004363.2 +1 validated p.P621T 0.157 396 0% 257 49.4% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin DMRTC2 63946 genome.wustl.edu 37 19 42354752 42354752 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040283.1 +1 validated p.H325 1.000 60 0% 35 60% 0 - - - - NULL POU2F2 5452 genome.wustl.edu 37 19 42599726 42599726 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002698.2 -1 validated p.R293C 1.000 53 0% 25 48% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like ERF 2077 genome.wustl.edu 37 19 42754535 42754535 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006494.2 -1 validated p.V69I 0.998 68 0% 44 54.5% 60 38.3% possibly_damaging(0.776) tolerated(0.21) neutral(0.333) HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785 CIC 23152 genome.wustl.edu 37 19 42793060 42793060 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015125.3 +1 validated p.V318I 0.230 30 0% 11 63.6% 39 46.1% benign(0.007) tolerated(0.2) neutral(0.049) NULL MEGF8 1954 genome.wustl.edu 37 19 42860014 42860014 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001410.2 +1 validated p.V1350I 0.999 47 0% 20 60% 10 30% possibly_damaging(0.902) tolerated(0.25) neutral(0.394) NULL LIPE 3991 genome.wustl.edu 37 19 42914539 42914539 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005357.2 -1 reviewed p.E447K 0.091 33 0% 25 40% 3 33.3% benign(0.361) tolerated(0.07) neutral(0.433) HMMPfam_HSL_N ZNF224 7767 genome.wustl.edu 37 19 44605020 44605020 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013398.2 +1 validated p.A28T 0.063 533 0% 464 44.6% 11 36.3% benign(0.003) tolerated(0.16) neutral(0.059) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF225 7768 genome.wustl.edu 37 19 44636457 44636457 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013362.2 +1 validated p.G564R 0.997 203 0% 209 46.9% 3 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_C2H2 and C2HC zinc fingers ZNF235 9310 genome.wustl.edu 37 19 44792827 44792827 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004234.4 -1 reviewed p.R254H 0.000 240 0% 195 49.2% 2 50% benign(0) tolerated(0.67) neutral(0.003) superfamily_C2H2 and C2HC zinc fingers CLASRP 11129 genome.wustl.edu 37 19 45562618 45562618 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007056.2 +1 validated p.V236I 1.000 108 0% 83 49.4% 46 39.1% unknown(0) tolerated(0.31) - NULL CLASRP 11129 genome.wustl.edu 37 19 45565423 45565423 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007056.2 +1 validated p.R292Q 1.000 276 0.4% 214 43.5% 25 60% unknown(0) deleterious(0.01) - NULL KLC3 147700 genome.wustl.edu 37 19 45848910 45848910 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_177417.2 +1 reviewed p.L37 0.998 14 0% 20 35% 7 42.8% - - - NULL FOSB 2354 genome.wustl.edu 37 19 45976019 45976019 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006732.2 +1 reviewed p.L256 1.000 37 0% 33 42.4% 6 66.6% - - - NULL GPR4 2828 genome.wustl.edu 37 19 46094209 46094209 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005282.2 -1 validated p.R306C 0.999 124 0% 100 52% 6 0% probably_damaging(0.997) tolerated(0.07) deleterious(0.785) superfamily_SSF81321 CCDC8 83987 genome.wustl.edu 37 19 46914771 46914771 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032040.3 -1 validated p.R433W 0.000 191 0% 116 48.3% 32 53.1% probably_damaging(0.972) deleterious(0.04) deleterious(0.763) NULL ENSG00000230510 0 genome.wustl.edu 37 19 47029022 47029022 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000414155 -1 known p.S82 0.978 53 0% 48 39.6% 1 100% - - - HMMPfam_PPP5 DHX34 9704 genome.wustl.edu 37 19 47870312 47870312 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014681.5 +1 reviewed p.T556 0.007 303 0% 217 42.4% 22 54.5% - - - HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases DHX34 9704 genome.wustl.edu 37 19 47883211 47883211 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014681.5 +1 reviewed p.S984N 1.000 54 0% 36 47.2% 39 41% benign(0.057) tolerated(0.39) neutral(0.019) NULL SLC8A2 6543 genome.wustl.edu 37 19 47935431 47935431 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015063.2 -1 validated p.S794 0.998 141 0% 75 50.7% 0 - - - - HMMPfam_Na_Ca_ex NAPA 8775 genome.wustl.edu 37 19 48003993 48003993 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003827.2 -1 reviewed p.A64 0.014 52 0% 44 40.9% 136 53.6% - - - superfamily_TPR-like GLTSCR2 29997 genome.wustl.edu 37 19 48254313 48254313 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015710.4 +1 validated p.G183R 0.055 17 0% 19 52.6% 738 48.5% possibly_damaging(0.492) tolerated(0.42) neutral(0.178) HMMPfam_Nop53 DBP 1628 genome.wustl.edu 37 19 49134255 49134255 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001352.3 -1 validated p.R273C 0.961 57 0% 41 26.8% 12 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00338,HMMPfam_bZIP_2 PLEKHA4 57664 genome.wustl.edu 37 19 49357520 49357520 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020904.2 -1 validated p.P350L 0.986 147 0% 118 49.2% 40 45% probably_damaging(0.991) deleterious(0.02) deleterious(0.827) NULL TEAD2 8463 genome.wustl.edu 37 19 49863319 49863319 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003598.1 -1 provisional p.R5Q 1.000 94 0% 64 46.9% 22 54.5% possibly_damaging(0.928) tolerated(0.27) neutral(0.409) NULL CCDC155 147872 genome.wustl.edu 37 19 49912245 49912245 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144688.4 +1 validated p.R339C 0.992 299 0% 181 48.6% 0 - possibly_damaging(0.937) tolerated(0.06) deleterious(0.706) NULL CCDC155 147872 genome.wustl.edu 37 19 49920450 49920450 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144688.4 +1 validated p.P492S 0.989 55 0% 36 16.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NOSIP 51070 genome.wustl.edu 37 19 50060501 50060501 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015953.3 -1 provisional p.Y88 0.548 41 0% 16 37.5% 161 49% - - - superfamily_SSF57850 PRR12 57479 genome.wustl.edu 37 19 50103065 50103065 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020719.1 +1 validated p.L1405 0.168 49 0% 33 48.5% 30 50% - - - NULL BCL2L12 83596 genome.wustl.edu 37 19 50173592 50173592 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138639.1 +1 reviewed p.P267 0.010 20 0% 14 50% 33 48.4% - - - NULL PNKP 11284 genome.wustl.edu 37 19 50365045 50365045 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007254.2 -1 provisional p.A428T 0.000 37 0% 28 64.3% 71 56.3% benign(0.001) tolerated(0.45) neutral(0.012) superfamily_SSF52540 NUP62 23636 genome.wustl.edu 37 19 50412396 50412396 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012346.3 -1 reviewed p.A223 0.011 189 0% 128 60.2% 85 42.3% - - - NULL VRK3 51231 genome.wustl.edu 37 19 50500823 50500823 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016440.3 -1 reviewed p.A206V 1.000 108 0% 64 37.5% 40 40% possibly_damaging(0.663) tolerated(0.17) neutral(0.293) HMMSmart_SM00220 LRRC4B 94030 genome.wustl.edu 37 19 51021678 51021678 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001080457.1 -1 provisional p.T431M 1.000 40 0% 39 64.1% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 ETFB 2109 genome.wustl.edu 37 19 51856534 51856534 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001014763.1 -1 reviewed p.R167H 1.000 60 0% 40 32.5% 149 47.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ETF,superfamily_SSF52402 SIGLEC10 89790 genome.wustl.edu 37 19 51919242 51919242 + Missense_Mutation SNP C C A rs184604120 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033130.4 -1 validated p.G312W 0.000 74 0% 28 50% 0 - benign(0.081) tolerated(0.12) neutral(0.267) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin ZNF432 9668 genome.wustl.edu 37 19 52536998 52536998 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014650.2 -1 provisional p.R645Q 0.024 193 0% 153 49.7% 9 44.4% benign(0.214) deleterious(0.04) neutral(0.370) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PPP2R1A 5518 genome.wustl.edu 37 19 52714672 52714672 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014225.5 +1 reviewed p.R144C 1.000 28 0% 26 50% 296 42.5% probably_damaging(1) deleterious(0.03) deleterious(0.865) superfamily_ARM repeat PPP2R1A 5518 genome.wustl.edu 37 19 52716328 52716328 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014225.5 +1 reviewed p.R258C 1.000 38 0% 31 45.2% 330 36% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HEAT,superfamily_ARM repeat ZNF321P 399669 genome.wustl.edu 37 19 53432482 53432482 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_203307.2 -1 validated p.E57K 0.001 458 0% 306 48.7% 13 53.8% probably_damaging(0.999) tolerated(0.52) deleterious(0.499) NULL NLRP12 91662 genome.wustl.edu 37 19 54327315 54327315 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144687.2 -1 reviewed p.L38 0.330 91 0% 63 27% 0 - - - - HMMPfam_PAAD_DAPIN,superfamily_DEATH domain CNOT3 4849 genome.wustl.edu 37 19 54655998 54655998 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000457463 +1 known p.G79R 0.824 52 0% 40 22.5% 58 22.4% - - - NULL MBOAT7 79143 genome.wustl.edu 37 19 54691192 54691192 + Splice_Site SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000495968 -1 known NULL 0.000 126 0% 82 52.4% 0 - - - - - LILRA2 11027 genome.wustl.edu 37 19 55098751 55098751 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130917.1 +1 validated p.G464R 0.000 236 0% 165 41.8% 0 - benign(0.019) tolerated(0.06) neutral(0.324) NULL ZNF628 89887 genome.wustl.edu 37 19 55993156 55993156 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033113.2 +1 validated p.T195M 1.000 25 0% 11 45.5% 8 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_C2H2 and C2HC zinc fingers FIZ1 84922 genome.wustl.edu 37 19 56104887 56104887 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032836.2 -1 reviewed p.P140 0.001 37 0% 15 40% 13 46.1% - - - NULL U2AF2 11338 genome.wustl.edu 37 19 56180829 56180829 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007279.2 +1 reviewed p.P355H 0.974 98 0% 97 60.8% 398 52.5% possibly_damaging(0.949) deleterious(0.05) deleterious(0.738) NULL EPN1 29924 genome.wustl.edu 37 19 56196840 56196840 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130071.1 +1 validated p.V214M 0.982 53 0% 28 60.7% 225 47.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273 NLRP4 147945 genome.wustl.edu 37 19 56369169 56369169 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_134444.4 +1 validated p.R137H 0.000 179 0% 135 46.7% 0 - benign(0) tolerated(0.22) neutral(0.042) superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF471 57573 genome.wustl.edu 37 19 57037094 57037094 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020813.2 +1 validated p.S553N 0.148 207 0.5% 174 44.8% 0 - possibly_damaging(0.942) tolerated(0.14) deleterious(0.637) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PEG3 5178 genome.wustl.edu 37 19 57325360 57325360 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006210.2 -1 reviewed p.G1484S 0.003 210 0% 136 47.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL AURKC 6795 genome.wustl.edu 37 19 57743436 57743436 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001015878.1 +1 reviewed p.R47H 0.996 135 0% 78 48.7% 0 - benign(0.411) deleterious(0) deleterious(0.578) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase LOC100131296 100131296 genome.wustl.edu 37 19 57862898 57862898 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_001725645.2 -1 model p.R78 0.000 38 0% 23 43.5% 0 - - - - NULL ZNF17 7565 genome.wustl.edu 37 19 57932225 57932225 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006959.2 +1 validated p.F455 0.000 191 0% 132 47.7% 4 75% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF776 284309 genome.wustl.edu 37 19 58265495 58265495 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_173632.3 +1 validated p.R333C 0.000 256 0.4% 178 41% 9 22.2% benign(0.002) deleterious(0.01) neutral(0.406) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF417 147687 genome.wustl.edu 37 19 58420997 58420997 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152475.2 -1 validated p.R217C 0.000 505 0% 355 36.1% 6 33.3% benign(0.002) tolerated(1) - superfamily_C2H2 and C2HC zinc fingers LOC100288459 100288459 genome.wustl.edu 37 19 58596562 58596562 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343664.1 +1 model p.R95C 0.001 16 0% 11 63.6% 33 33.3% - - - NULL ZNF329 79673 genome.wustl.edu 37 19 58640731 58640732 + Frame_Shift_Del DEL AA AA - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 AA AA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024620.3 -1 validated p.L47fs 0.015:0.000 - - - - - - - - - NULL ZSCAN22 342945 genome.wustl.edu 37 19 58850058 58850058 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181846.2 +1 validated p.S281L 0.000 79 0% 71 42.3% 2 50% possibly_damaging(0.915) tolerated(0.06) deleterious(0.689) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 TRIB3 57761 genome.wustl.edu 37 20 376933 376933 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021158.3 +1 reviewed p.V226M 1.000 34 0% 26 57.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_Kinase_like,HMMPfam_Pkinase SIRPA 140885 genome.wustl.edu 37 20 1903212 1903212 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001040022.1 +1 reviewed p.D336 0.002 235 0% 160 43.1% 0 - - - - HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726 TGM6 343641 genome.wustl.edu 37 20 2376022 2376022 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_198994.2 +1 validated p.R122C 0.571 127 0% 91 40.7% 0 - probably_damaging(0.974) tolerated(0.07) deleterious(0.735) superfamily_E set domains TMC2 117532 genome.wustl.edu 37 20 2604936 2604936 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080751.2 +1 validated p.D734N 1.000 133 0% 101 42.6% 0 - benign(0.018) tolerated(0.24) neutral(0.038) NULL FASTKD5 60493 genome.wustl.edu 37 20 3128843 3128843 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021826.4 -1 validated p.R292C 1.000 70 1.4% 55 29.1% 10 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SLC4A11 83959 genome.wustl.edu 37 20 3209830 3209830 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032034.3 -1 reviewed p.S659 0.429 37 0% 35 45.7% 26 50% - - - HMMPfam_HCO3_cotransp RASSF2 9770 genome.wustl.edu 37 20 4776526 4776526 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014737.2 -1 reviewed p.N74 0.431 250 0.8% 173 12.7% 2 0% - - - NULL RRBP1 6238 genome.wustl.edu 37 20 17616305 17616305 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042576.1 -1 reviewed p.R348Q 0.986 69 0% 41 36.6% 150 47.3% probably_damaging(0.997) tolerated(0.27) deleterious(0.500) NULL CSRP2BP 57325 genome.wustl.edu 37 20 18163907 18163907 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020536.4 +1 reviewed p.T650M 1.000 188 0% 133 38.3% 26 53.8% possibly_damaging(0.909) deleterious(0.01) deleterious(0.768) superfamily_Acyl_CoA_acyltransferase C20orf26 26074 genome.wustl.edu 37 20 20056184 20056184 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015585.3 +1 validated p.T164M 0.000 172 0% 147 53.1% 1 0% benign(0.083) tolerated(0.14) neutral(0.256) NULL SSTR4 6754 genome.wustl.edu 37 20 23016520 23016520 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001052.2 +1 validated p.V134I 1.000 74 0% 49 53.1% 0 - benign(0.183) tolerated(1) neutral(0.017) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 HM13 81502 genome.wustl.edu 37 20 30126012 30126012 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178581.1 +1 reviewed p.L105 1.000 260 0% 182 44.5% 100 40% - - - HMMSmart_PSN,HMMPfam_Peptidase_A22B POFUT1 23509 genome.wustl.edu 37 20 30818680 30818680 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015352.1 +1 reviewed p.P265L 1.000 53 0% 62 38.7% 54 53.7% probably_damaging(0.964) deleterious(0) deleterious(0.851) HMMPfam_O-FucT BPIFB4 149954 genome.wustl.edu 37 20 31671282 31671282 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_182519.2 +1 validated p.N93 0.030 78 0% 67 53.7% 0 - - - - NULL BPIFA3 128861 genome.wustl.edu 37 20 31813020 31813020 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_178466.3 +1 validated p.E168G 0.796 270 0% 168 44% 0 - probably_damaging(0.995) tolerated(0.13) deleterious(0.710) HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI NECAB3 63941 genome.wustl.edu 37 20 32260221 32260221 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031232.3 -1 reviewed p.R46H 1.000 91 0% 59 42.4% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand NCOA6 23054 genome.wustl.edu 37 20 33329159 33329159 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014071.2 -1 reviewed p.A1634V 1.000 174 0.6% 160 42.5% 32 37.5% benign(0) tolerated(1) - NULL CPNE1 8904 genome.wustl.edu 37 20 34214270 34214270 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003915.4 -1 reviewed p.A508T 1.000 113 0% 77 51.9% 238 49.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL RBM12 10137 genome.wustl.edu 37 20 34242510 34242510 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006047.4 -1 reviewed p.P245 0.836 162 0.6% 123 23.6% 61 29.5% - - - NULL C20orf4 25980 genome.wustl.edu 37 20 34828214 34828214 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015511.3 +1 predicted p.E142K 0.948 107 0.9% 86 47.7% 57 45.6% benign(0.004) tolerated(0.25) neutral(0.037) HMMPfam_AAR2 MYL9 10398 genome.wustl.edu 37 20 35173421 35173421 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006097.3 +1 reviewed p.R45H 1.000 193 0% 163 44.2% 14 0% benign(0.397) deleterious(0.05) deleterious(0.473) HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand TGIF2 60436 genome.wustl.edu 37 20 35219749 35219749 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021809.5 +1 reviewed p.A210V 1.000 50 0% 37 16.2% 48 10.4% benign(0.109) tolerated(0.06) neutral(0.331) NULL SOGA1 140710 genome.wustl.edu 37 20 35467712 35467712 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_199181.2 -1 validated p.R36W 1.000 42 0% 24 25% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SRC 6714 genome.wustl.edu 37 20 36026157 36026157 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005417.3 +1 reviewed p.P253 0.000 56 0% 40 72.5% 8 25% - - - superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain KIAA1755 85449 genome.wustl.edu 37 20 36852005 36852005 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001029864.1 -1 predicted p.A735T 0.994 213 0% 158 47.5% 0 - probably_damaging(0.976) deleterious(0.02) deleterious(0.801) superfamily_Spectrin repeat RALGAPB 57148 genome.wustl.edu 37 20 37187086 37187086 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020336.2 +1 validated p.T1174M 1.000 202 0% 148 44.6% 10 70% possibly_damaging(0.859) tolerated(0.11) deleterious(0.604) superfamily_Rap/Ran-GAP (Pfam 02145) ACTR5 79913 genome.wustl.edu 37 20 37400215 37400215 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024855.3 +1 validated p.S527L 0.824 109 0% 65 56.9% 27 44.4% benign(0) tolerated(0.25) neutral(0.037) HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 L3MBTL1 26013 genome.wustl.edu 37 20 42168797 42168797 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015478.5 +1 reviewed p.T637M 0.026 116 0% 72 51.4% 2 100% possibly_damaging(0.782) tolerated(0.1) deleterious(0.579) NULL HNF4A 3172 genome.wustl.edu 37 20 43030037 43030037 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000457.3 +1 reviewed p.D9N 1.000 119 0.8% 70 40% 0 - possibly_damaging(0.922) deleterious(0.02) deleterious(0.754) NULL HNF4A 3172 genome.wustl.edu 37 20 43043177 43043177 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000457.3 +1 reviewed p.D175N 1.000 124 0% 90 48.9% 1 100% possibly_damaging(0.541) tolerated(0.08) deleterious(0.483) superfamily_Nuclear receptor ligand-binding domain MMP9 4318 genome.wustl.edu 37 20 44640332 44640332 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004994.2 +1 reviewed p.A315T 0.999 32 0% 32 46.9% 5 0% benign(0.119) deleterious(0) neutral(0.454) "HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain" SULF2 55959 genome.wustl.edu 37 20 46365639 46365639 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018837.3 -1 validated p.G75W 1.000 239 0% 180 47.8% 12 41.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like PREX1 57580 genome.wustl.edu 37 20 47266012 47266012 + Missense_Mutation SNP C C G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020820.3 -1 reviewed p.G1044A 0.022 88 0% 64 31.2% 3 33.3% benign(0.054) deleterious(0.01) neutral(0.409) NULL SPATA2 9825 genome.wustl.edu 37 20 48522895 48522895 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135773.1 -1 validated p.R275Q 1.000 27 0% 21 57.1% 17 47% probably_damaging(0.997) deleterious(0.02) deleterious(0.849) NULL ADNP 23394 genome.wustl.edu 37 20 49508030 49508030 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015339.2 -1 reviewed p.G1074V 1.000 187 0% 142 39.4% 133 48.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ATP9A 10079 genome.wustl.edu 37 20 50217872 50217872 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006045.1 -1 validated p.A1008T 0.999 162 0% 116 43.1% 35 51.4% benign(0) tolerated(0.44) neutral(0.013) NULL BMP7 655 genome.wustl.edu 37 20 55777547 55777547 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000433911 -1 known p.G170S 0.005 27 0% 24 16.7% 0 - - - - HMMPfam_TGFb_propeptide CTCFL 140690 genome.wustl.edu 37 20 56087731 56087731 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_080618.2 -1 reviewed p.R470C 1.000 158 0% 87 12.6% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PMEPA1 56937 genome.wustl.edu 37 20 56227159 56227159 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020182.3 -1 validated p.A272T 0.997 71 0% 45 53.3% 19 31.5% benign(0) tolerated(1) - NULL VAPB 9217 genome.wustl.edu 37 20 57016116 57016116 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004738.3 +1 reviewed p.R184W 0.998 262 0% 188 47.9% 35 37.1% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL NPEPL1 79716 genome.wustl.edu 37 20 57287556 57287556 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024663.3 +1 validated p.A308T 1.000 238 0% 158 24.1% 17 17.6% benign(0.11) tolerated(0.27) neutral(0.042) HMMPfam_Peptidase_M17,superfamily_Zn-dependent exopeptidases CDH4 1002 genome.wustl.edu 37 20 60485482 60485482 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001794.2 +1 reviewed p.A398V 0.023 85 0% 36 47.2% 0 - benign(0.005) tolerated(0.52) neutral(0.009) HMMPfam_Cadherin,superfamily_Cadherin CDH4 1002 genome.wustl.edu 37 20 60511915 60511915 + Missense_Mutation SNP G G C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001794.2 +1 reviewed p.G889R 1.000 72 0% 35 34.3% 0 - probably_damaging(0.98) deleterious(0.02) deleterious(0.807) HMMPfam_Cadherin_C TAF4 6874 genome.wustl.edu 37 20 60581663 60581663 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003185.3 -1 reviewed p.T709M 1.000 30 0% 20 75% 20 40% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL HRH3 11255 genome.wustl.edu 37 20 60794807 60794807 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007232.2 -1 validated p.L74F 1.000 34 0% 30 50% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LAMA5 3911 genome.wustl.edu 37 20 60898623 60898623 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005560.3 -1 reviewed p.D1985N 1.000 20 0% 10 60% 69 44.9% probably_damaging(0.996) tolerated(0.16) deleterious(0.521) HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_EGF/Laminin LAMA5 3911 genome.wustl.edu 37 20 60904036 60904036 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005560.3 -1 reviewed p.P1437 0.025 25 0% 24 54.2% 65 60% - - - NULL DIDO1 11083 genome.wustl.edu 37 20 61525857 61525857 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033081.1 -1 reviewed p.A827V 0.011 198 0.5% 157 47.1% 9 66.6% probably_damaging(0.979) deleterious(0.02) deleterious(0.805) NULL DIDO1 11083 genome.wustl.edu 37 20 61536912 61536912 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000266071 -1 known p.A544T 0.000 5 0.000 11 0.818 44 31.8% benign(0.164) - - NULL COL20A1 57642 genome.wustl.edu 37 20 61951496 61951496 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020882.2 +1 validated p.V1008I 0.746 13 0% 13 84.6% 0 - benign(0.002) tolerated(0.94) - HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases KCNQ2 3785 genome.wustl.edu 37 20 62065190 62065190 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_172107.2 -1 reviewed p.E364K 1.000 136 0% 81 45.7% 0 - probably_damaging(0.984) tolerated(0.12) deleterious(0.691) NULL PRIC285 85441 genome.wustl.edu 37 20 62195343 62195343 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001037335.2 -1 reviewed p.R1611H 0.000 34 0% 35 45.7% 18 27.7% benign(0.032) tolerated(0.34) neutral(0.025) HMMPfam_RNB GMEB2 26205 genome.wustl.edu 37 20 62221470 62221470 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012384.3 -1 reviewed p.A522V 0.197 9 0.000 11 0.455 15 73.3% benign(0.033) tolerated(0.1) neutral(0.288) NULL ZNF512B 57473 genome.wustl.edu 37 20 62599275 62599275 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020713.1 -1 provisional p.R10H 1.000 113 0% 52 36.5% 9 22.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CXADR 1525 genome.wustl.edu 37 21 18919449 18919449 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001338.3 +1 reviewed p.Q50K 1.000 172 0% 123 49.6% 32 43.7% benign(0.032) tolerated(0.71) neutral(0.003) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin BTG3 10950 genome.wustl.edu 37 21 18970965 18970965 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001130914.1 -1 reviewed p.S207 0.000 162 0% 124 41.9% 56 58.9% - - - NULL SCAF4 57466 genome.wustl.edu 37 21 33044112 33044112 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020706.2 -1 reviewed p.R1015Q 1.000 290 0% 215 46.5% 35 51.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SCAF4 57466 genome.wustl.edu 37 21 33074171 33074171 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020706.2 -1 reviewed p.S173Y 1.000 264 0% 203 46.3% 32 50% unknown(0) tolerated(0.1) - NULL SYNJ1 8867 genome.wustl.edu 37 21 34003782 34003782 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003895.3 -1 validated p.N1415 1.000 136 0% 98 37.8% 1 100% - - - NULL SON 6651 genome.wustl.edu 37 21 34924580 34924580 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138927.1 +1 reviewed p.R1015C 1.000 231 0% 198 14.1% 49 12.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ITSN1 6453 genome.wustl.edu 37 21 35107496 35107496 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000456489 +1 known p.R51C 0.955 150 0% 103 43.7% 12 75% - - - NULL KCNE1 3753 genome.wustl.edu 37 21 35821559 35821559 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000219.3 -1 reviewed p.T125M 0.000 16 0% 16 68.8% 0 - benign(0) tolerated(0.27) neutral(0.034) HMMPfam_ISK_Channel DOPEY2 9980 genome.wustl.edu 37 21 37617754 37617754 + Missense_Mutation SNP C C T rs147966121 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005128.2 +1 validated p.S1159L 0.001 42 0% 25 36% 16 31.2% benign(0.086) tolerated(0.1) neutral(0.293) NULL HLCS 3141 genome.wustl.edu 37 21 38269365 38269365 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000411.5 -1 reviewed p.G416S 0.989 157 0% 100 65% 6 83.3% benign(0) tolerated(0.9) - NULL TTC3 7267 genome.wustl.edu 37 21 38538120 38538120 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001894.1 +1 validated p.R1202* 0.036 186 0% 107 40.2% 53 22.6% - - - superfamily_Spectrin,superfamily_SSF48452 ERG 2078 genome.wustl.edu 37 21 39762931 39762931 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136154.1 -1 validated p.R309H 1.000 293 0% 207 44.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL MX1 4599 genome.wustl.edu 37 21 42813698 42813698 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144925.1 +1 reviewed p.D262 0.928 236 0% 144 20.1% 51 17.6% - - - HMMPfam_Dynamin_M,HMMSmart_DYNc,superfamily_SSF52540 LOC100288232 100288232 genome.wustl.edu 37 21 43274682 43274682 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343752.1 +1 model p.A130T 0.000 30 0% 29 55.2% 1 100% - - - NULL UBASH3A 53347 genome.wustl.edu 37 21 43838559 43838559 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018961.2 +1 validated p.T296M 0.994 85 0% 63 46% 0 - benign(0.002) tolerated(0.13) neutral(0.253) HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain PDE9A 5152 genome.wustl.edu 37 21 44180951 44180951 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002606.2 +1 reviewed p.T340M 0.758 134 0% 105 45.7% 21 57.1% benign(0.001) tolerated(0.38) neutral(0.018) HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like TRAPPC10 7109 genome.wustl.edu 37 21 45502719 45502719 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003274.4 +1 reviewed p.H592N 0.160 248 0% 173 42.8% 26 50% benign(0.001) tolerated(0.54) neutral(0.007) NULL PWP2 5822 genome.wustl.edu 37 21 45548493 45548493 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005049.2 +1 validated p.D857 0.389 68 0% 39 48.7% 59 40.6% - - - HMMPfam_PWP2 TSPEAR 54084 genome.wustl.edu 37 21 45947271 45947271 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_144991.2 -1 provisional p.S351 0.114 554 0.2% 408 44.1% 1 100% - - - NULL SUMO3 6612 genome.wustl.edu 37 21 46226848 46226848 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000397898 -1 known p.P127L 0.000 44 0% 43 41.9% 183 54% unknown(0) - - NULL PTTG1IP 754 genome.wustl.edu 37 21 46271448 46271448 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000445724 -1 known p.P88L 0.001 184 0% 148 45.3% 350 50% possibly_damaging(0.877) deleterious(0) deleterious(0.786) NULL ITGB2 3689 genome.wustl.edu 37 21 46311770 46311770 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000211.3 -1 reviewed p.R456C 0.000 63 0% 44 45.5% 12 0% possibly_damaging(0.946) tolerated(0.05) deleterious(0.736) superfamily_SSF57196 COL18A1 80781 genome.wustl.edu 37 21 46876305 46876305 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_130444.2 +1 reviewed p.G287 0.000 49 0% 46 39.1% 1 100% - - - NULL COL6A2 1292 genome.wustl.edu 37 21 47538942 47538942 + Splice_Site SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001849.3 +1 reviewed e13-2 0.996 69 0% 46 37% 0 - - - - - MCM3AP 8888 genome.wustl.edu 37 21 47663397 47663397 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003906.3 -1 reviewed p.R1760W 0.019 65 0% 36 66.7% 42 52.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MCM3AP 8888 genome.wustl.edu 37 21 47665030 47665030 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003906.3 -1 reviewed p.E1577K 1.000 83 0% 56 50% 52 32.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL MCM3AP 8888 genome.wustl.edu 37 21 47695123 47695123 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003906.3 -1 reviewed p.E659K 1.000 121 0% 86 43% 21 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DIP2A 23181 genome.wustl.edu 37 21 47954584 47954584 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015151.3 +1 reviewed p.A542 0.034 73 0% 45 51.1% 8 12.5% - - - superfamily_Acetyl-CoA synthetase-like DIP2A 23181 genome.wustl.edu 37 21 47986589 47986589 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015151.3 +1 reviewed p.A1486T 1.000 159 1.3% 114 46.5% 14 42.8% benign(0.001) tolerated(0.31) neutral(0.027) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like MICAL3 57553 genome.wustl.edu 37 22 18299536 18299536 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015241.2 -1 provisional p.R1789C 0.971 44 0% 24 50% 16 43.7% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL DGCR2 9993 genome.wustl.edu 37 22 19029425 19029425 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005137.2 -1 reviewed p.V352I 1.000 71 0% 47 48.9% 126 46.8% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) NULL DGCR2 9993 genome.wustl.edu 37 22 19052453 19052453 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005137.2 -1 reviewed p.L152 0.235 59 0% 36 33.3% 48 14.5% - - - HMMSmart_CLECT,superfamily_C-type_lectin_fold TSSK2 23617 genome.wustl.edu 37 22 19119640 19119640 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_053006.4 +1 validated p.C243Y 0.003 51 0% 40 50% 2 50% benign(0) deleterious(0.04) neutral(0.349) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase DGCR14 8220 genome.wustl.edu 37 22 19121815 19121815 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022719.2 -1 reviewed p.P442L 0.998 278 0% 220 45.5% 41 46.3% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL DGCR14 8220 genome.wustl.edu 37 22 19125775 19125775 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022719.2 -1 reviewed p.P293H 1.000 93 0% 59 25.4% 20 15% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Es2 CLTCL1 8218 genome.wustl.edu 37 22 19213812 19213812 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007098.3 -1 reviewed p.A626V 1.000 278 0% 192 50.5% 5 80% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat MRPL40 64976 genome.wustl.edu 37 22 19422320 19422320 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003776.2 +1 reviewed p.R67C 0.965 180 0% 168 49.4% 58 41.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MRP-L28 C22orf29 79680 genome.wustl.edu 37 22 19839194 19839194 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024627.5 -1 validated p.P197 0.000 50 0% 32 40.6% 9 55.5% - - - NULL TRMT2A 27037 genome.wustl.edu 37 22 20102877 20102877 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022727.4 -1 validated p.G268R 0.999 25 0% 18 55.6% 62 58% probably_damaging(0.987) deleterious(0) deleterious(0.881) superfamily_S-adenosyl-L-methionine-dependent methyltransferases RIMBP3 85376 genome.wustl.edu 37 22 20457633 20457633 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015672.1 -1 validated p.P1223 0.039 217 0% 168 29.8% 0 - - - - NULL RIMBP3 85376 genome.wustl.edu 37 22 20458315 20458315 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015672.1 -1 validated p.P996H 0.993 271 0% 176 26.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Fibronectin type III KLHL22 84861 genome.wustl.edu 37 22 20819385 20819385 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032775.2 -1 validated p.T291M 0.998 71 0% 55 29.1% 29 48.2% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Galactose oxidase central domain MED15 51586 genome.wustl.edu 37 22 20937419 20937419 + Frame_Shift_Del DEL G G - novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001003891.1 +1 reviewed p.M519fs 1.000 - - - - - - - - - NULL SERPIND1 3053 genome.wustl.edu 37 22 21134170 21134170 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000185.3 +1 reviewed p.S190 1.000 162 0% 129 41.1% 0 - - - - HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins SNAP29 9342 genome.wustl.edu 37 22 21224794 21224794 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004782.3 +1 reviewed p.G136D 0.998 129 0% 88 48.9% 53 47.1% possibly_damaging(0.731) tolerated(0.54) neutral(0.275) NULL PI4KAP2 375133 genome.wustl.edu 37 22 21842304 21842304 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000450651 -1 known p.V46 1.000 105 0% 64 31.2% 16 18.7% - - - NULL CCDC116 164592 genome.wustl.edu 37 22 21989160 21989160 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152612.2 +1 provisional p.R270* 0.000 39 0% 21 42.9% 0 - - - - NULL CCDC116 164592 genome.wustl.edu 37 22 21989343 21989343 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152612.2 +1 provisional p.D331N 0.000 51 0% 21 66.7% 0 - benign(0.073) tolerated(0.29) neutral(0.034) NULL LOC100287891 100287891 genome.wustl.edu 37 22 23241807 23241807 + Missense_Mutation SNP C C T rs190433268 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b XM_002343769.1 -1 model p.E102K 0.530 713 0% 496 42.7% 0 - - - - NULL GNAZ 2781 genome.wustl.edu 37 22 23438544 23438544 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002073.2 +1 reviewed p.A221V 1.000 212 0% 136 53.7% 3 33.3% possibly_damaging(0.878) deleterious(0.01) deleterious(0.748) HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases DERL3 91319 genome.wustl.edu 37 22 24181129 24181129 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001135751.1 -1 reviewed p.V16M 1.000 16 0% 11 45.5% 2 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_DER1 SLC2A11 66035 genome.wustl.edu 37 22 24226125 24226125 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000407566 +1 known p.R101H 0.000 184 0% 93 36.6% 3 66.6% benign(0.024) deleterious(0) neutral(0.446) NULL ADORA2A 135 genome.wustl.edu 37 22 24837244 24837244 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000675.4 +1 reviewed p.P342 0.000 35 0% 23 43.5% 0 - - - - NULL KREMEN1 83999 genome.wustl.edu 37 22 29534665 29534665 + Missense_Mutation SNP G G A rs141945870 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032045.4 +1 reviewed p.E340K 0.995 172 0% 135 50.4% 3 33.3% probably_damaging(0.958) tolerated(0.1) deleterious(0.688) NULL RHBDD3 25807 genome.wustl.edu 37 22 29659833 29659833 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012265.1 -1 provisional p.G175S 1.000 28 0% 22 45.5% 74 47.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Rhomboid NEFH 4744 genome.wustl.edu 37 22 29885534 29885534 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021076.3 +1 reviewed p.P635 0.000 297 0% 226 44.7% 0 - - - - HMMPfam_DUF1388 OSBP2 23762 genome.wustl.edu 37 22 31285622 31285622 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030758.3 +1 reviewed p.P541L 1.000 92 0% 74 45.9% 4 75% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Oxysterol_BP SMTN 6525 genome.wustl.edu 37 22 31484539 31484539 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_134270.1 +1 reviewed p.R81W 0.040 30 0% 20 45% 2 50% unknown(0) deleterious(0) - NULL PRR14L 253143 genome.wustl.edu 37 22 32108443 32108443 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000330495 -1 known p.P97T 0.043 232 0% 164 32.9% 18 27.7% - - - NULL DEPDC5 9681 genome.wustl.edu 37 22 32198757 32198757 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014662.2 +1 validated p.P338 0.037 398 0% 264 43.6% 5 60% - - - NULL DEPDC5 9681 genome.wustl.edu 37 22 32210985 32210985 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014662.2 +1 validated p.R485* 1.000 118 0% 73 15.1% 7 14.2% - - - NULL SYN3 8224 genome.wustl.edu 37 22 32937657 32937657 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003490.3 -1 reviewed p.V273M 1.000 368 0% 291 47.8% 0 - unknown(0) deleterious(0.01) - HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like HMOX1 3162 genome.wustl.edu 37 22 35789530 35789530 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002133.1 +1 reviewed p.R269Q 0.575 255 0% 182 48.9% 9 11.1% benign(0.405) tolerated(0.17) neutral(0.190) NULL APOL2 23780 genome.wustl.edu 37 22 36624251 36624251 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_030882.2 -1 reviewed p.H71 0.000 73 0% 52 40.4% 70 57.1% - - - HMMPfam_ApoL C1QTNF6 114904 genome.wustl.edu 37 22 37581375 37581375 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031910.3 -1 validated p.R58W 0.999 32 0% 20 60% 20 40% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CARD10 29775 genome.wustl.edu 37 22 37891895 37891895 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014550.3 -1 reviewed p.C725 0.929 88 0% 58 41.4% 61 55.7% - - - NULL C22orf23 84645 genome.wustl.edu 37 22 38340511 38340511 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_032561.2 -1 predicted p.I165 0.983 251 0% 168 43.5% 11 72.7% - - - HMMPfam_UPF0193 SOX10 6663 genome.wustl.edu 37 22 38379425 38379425 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006941.3 -1 reviewed p.A123T 1.000 25 0% 21 38.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box SUN2 25777 genome.wustl.edu 37 22 39146290 39146290 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015374.1 -1 validated p.R154W 0.000 29 0% 26 57.7% 46 36.9% unknown(0) deleterious(0.03) - NULL CBX7 23492 genome.wustl.edu 37 22 39530585 39530585 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_175709.3 -1 validated p.R140H 1.000 37 0% 23 56.5% 3 100% benign(0.082) deleterious(0.02) neutral(0.389) NULL TAB1 10454 genome.wustl.edu 37 22 39826209 39826209 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006116.2 +1 reviewed p.S499 0.903 94 0% 73 49.3% 44 43.1% - - - NULL TNRC6B 23112 genome.wustl.edu 37 22 40711300 40711300 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000446273 +1 known p.I1250T 1.000 283 0% 183 49.7% 26 61.5% - - - NULL ADSL 158 genome.wustl.edu 37 22 40742683 40742683 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000026.2 +1 reviewed p.Q41* 1.000 46 0% 21 52.4% 20 10% - - - HMMPfam_Lyase_1,superfamily_L-aspartase-like MKL1 57591 genome.wustl.edu 37 22 40859267 40859267 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000422851 -1 known p.R16C 1.000 164 0% 108 46.3% 22 36.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_RPEL XPNPEP3 63929 genome.wustl.edu 37 22 41305142 41305142 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022098.2 +1 validated p.R291Q 1.000 393 0% 313 40.6% 10 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase L3MBTL2 83746 genome.wustl.edu 37 22 41621037 41621037 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031488.4 +1 validated p.L440M 0.997 425 0% 285 50.2% 26 46.1% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT ACO2 50 genome.wustl.edu 37 22 41920900 41920900 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001098.2 +1 reviewed p.T511 0.164 104 1% 74 44.6% 184 50.5% - - - superfamily_Aconitase_N EFCAB6 64800 genome.wustl.edu 37 22 44107499 44107499 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_022785.2 -1 validated p.S296L 0.000 113 0% 71 47.9% 1 0% benign(0.059) tolerated(0.23) neutral(0.045) superfamily_EF-hand PRR5-ARHGAP8 553158 genome.wustl.edu 37 22 45204215 45204215 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_181334.4 +1 reviewed p.V102I 1.000 130 0% 132 47.7% 17 47% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMSmart_SEC14,superfamily_CRAL_TRIO_C PHF21B 112885 genome.wustl.edu 37 22 45309959 45309959 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138415.3 -1 validated p.R192C 0.001 43 0% 17 52.9% 0 - benign(0) deleterious(0.03) neutral(0.364) NULL SELO 83642 genome.wustl.edu 37 22 50644929 50644929 + Silent SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_031454.1 +1 reviewed p.R246 0.328 140 0% 80 45% 32 68.7% - - - HMMPfam_UPF0061 TUBGCP6 85378 genome.wustl.edu 37 22 50671749 50671749 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020461.3 -1 reviewed p.C371Y 1.000 27 0% 12 41.7% 11 63.6% possibly_damaging(0.929) tolerated(1) neutral(0.376) HMMPfam_Spc97_Spc98 MAPK11 5600 genome.wustl.edu 37 22 50703786 50703786 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002751.5 -1 reviewed p.V327I 0.030 57 0% 62 40.3% 9 66.6% benign(0) deleterious(0.05) neutral(0.345) superfamily_Protein kinase-like (PK-like) PLXNB2 23654 genome.wustl.edu 37 22 50719370 50719370 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012401.2 -1 validated p.D1266N 1.000 112 0% 64 51.6% 460 46% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SBF1 6305 genome.wustl.edu 37 22 50898711 50898711 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002972.2 -1 validated p.D1091 0.980 207 0.5% 112 38.4% 32 31.2% - - - NULL ACR 49 genome.wustl.edu 37 22 51178320 51178320 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001097.2 +1 reviewed p.P160 0.000 77 0% 58 50% 2 50% - - - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys ENSG00000211459 0 genome.wustl.edu 37 MT 1147 1147 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000389680 +1 known NULL NULL 5 0.000 6 1.000 1960 98.8% - - - - ENSG00000210176 0 genome.wustl.edu 37 MT 12166 12166 + RNA SNP T T C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000387441 +1 novel NULL NULL 6 0.000 5 1.000 78 97.4% - - - - GTPBP6 8225 genome.wustl.edu 37 X 221755 221755 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000429643 -1 known p.L307I 1.000 560 0% 336 44.3% 55 34.5% possibly_damaging(0.832) tolerated(0.34) neutral(0.340) NULL PPP2R3B 28227 genome.wustl.edu 37 X 299399 299399 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_013239.4 -1 reviewed p.A506V 1.000 200 0% 145 45.5% 32 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL AKAP17A 8227 genome.wustl.edu 37 X 1712942 1712942 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005088.2 +1 validated p.R196Q 0.992 101 0% 59 44.1% 33 48.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZBED1 9189 genome.wustl.edu 37 X 2407160 2407160 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004729.3 -1 reviewed p.R534Q 0.000 53 0% 36 50% 28 60.7% benign(0) tolerated(0.58) neutral(0.005) NULL ZBED1 9189 genome.wustl.edu 37 X 2407351 2407351 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004729.3 -1 reviewed p.N470 1.000 204 0% 162 40.1% 30 43.3% - - - NULL PRKX 5613 genome.wustl.edu 37 X 3530280 3530280 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005044.4 -1 reviewed p.P346 0.012 168 0% 139 38.8% 56 41% - - - HMMSmart_S_TK_X SHROOM2 357 genome.wustl.edu 37 X 9900563 9900563 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001649.2 +1 reviewed p.G1080 0.000 43 0% 26 50% 5 100% - - - NULL FRMPD4 9758 genome.wustl.edu 37 X 12734690 12734690 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014728.3 +1 reviewed p.E704 0.056 54 0% 64 54.7% 0 - - - - NULL TXLNG 55787 genome.wustl.edu 37 X 16859706 16859706 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018360.2 +1 reviewed p.A468 0.001 154 0% 125 47.2% 14 28.5% - - - NULL PHKA2 5256 genome.wustl.edu 37 X 18924631 18924631 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000292.2 -1 reviewed p.R930W 0.920 51 0% 33 39.4% 16 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PHK_AB MAP3K15 389840 genome.wustl.edu 37 X 19387274 19387274 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001001671.3 -1 validated p.A630V 0.000 90 1.1% 49 46.9% 0 - benign(0) tolerated(0.3) neutral(0.029) NULL SMS 6611 genome.wustl.edu 37 X 21985431 21985431 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004595.2 +1 reviewed p.G56D 1.000 184 0% 141 53.2% 139 98.5% probably_damaging(1) tolerated(0.1) deleterious(0.786) NULL ENSG00000249566 0 genome.wustl.edu 37 X 23094916 23094916 + RNA SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000508288 -1 novel NULL 0.003 266 0% 247 44.1% 13 0% - - - - ZFX 7543 genome.wustl.edu 37 X 24229432 24229432 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003410.3 +1 reviewed p.R786Q 1.000 85 0% 75 46.7% 16 62.5% probably_damaging(0.965) deleterious(0.01) deleterious(0.812) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers DCAF8L2 347442 genome.wustl.edu 37 X 27765469 27765469 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136533.1 +1 provisional p.P153T 0.000 43 0% 26 50% 0 - - - - superfamily_WD40 repeat-like DCAF8L2 347442 genome.wustl.edu 37 X 27765667 27765667 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001136533.1 +1 provisional p.R219C 0.014 123 0% 88 46.6% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 FAM47B 170062 genome.wustl.edu 37 X 34962518 34962518 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152631.2 +1 validated p.R524W 0.000 206 0.5% 156 39.1% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL BCOR 54880 genome.wustl.edu 37 X 39923700 39923700 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001123385.1 -1 reviewed p.R1131W 1.000 110 0% 48 45.8% 19 73.6% probably_damaging(0.958) deleterious(0) deleterious(0.846) NULL BCOR 54880 genome.wustl.edu 37 X 39934047 39934047 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001123385.1 -1 reviewed p.A184 1.000 209 0% 134 20.1% 7 42.8% - - - NULL KDM6A 7403 genome.wustl.edu 37 X 44879905 44879905 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021140.2 +1 reviewed p.R165Q 1.000 392 0% 296 43.6% 6 50% possibly_damaging(0.921) tolerated(0.13) deleterious(0.623) superfamily_SSF48452 ZNF157 7712 genome.wustl.edu 37 X 47272965 47272965 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003446.3 +1 reviewed p.R498H 0.000 80 0% 59 59.3% 0 - benign(0.056) tolerated(0.15) neutral(0.244) NULL SYN1 6853 genome.wustl.edu 37 X 47435995 47435995 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006950.3 -1 reviewed p.V294 0.309 200 0% 145 52.4% 0 - - - - HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like CFP 5199 genome.wustl.edu 37 X 47489030 47489030 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145252.1 -1 reviewed p.S40 0.000 55 0% 24 37.5% 0 - - - - NULL SLC38A5 92745 genome.wustl.edu 37 X 48325240 48325240 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_033518.2 -1 validated p.A89T 0.993 157 0% 96 42.7% 0 - benign(0.009) tolerated(0.14) neutral(0.250) HMMPfam_Aa_trans MAGIX 79917 genome.wustl.edu 37 X 49022529 49022529 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024859.2 +1 validated p.R266W 0.005 37 0% 21 47.6% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL AKAP4 8852 genome.wustl.edu 37 X 49958703 49958703 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003886.2 -1 reviewed p.V221I 1.000 386 0.3% 321 48.6% 0 - benign(0.001) tolerated(0.16) neutral(0.059) HMMPfam_RII_binding_1,HMMSmart_SM00807 CXorf67 340602 genome.wustl.edu 37 X 51150443 51150443 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000342995 +1 known p.S192L 0.000 30 0% 30 30% 0 - probably_damaging(0.974) tolerated(0.31) neutral(0.443) NULL NUDT11 55190 genome.wustl.edu 37 X 51239180 51239180 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000375992 -1 known p.S39 0.993 142 0% 122 47.5% 0 - - - - HMMPfam_NUDIX,superfamily_NUDIX_hydrolase PHF8 23133 genome.wustl.edu 37 X 53965674 53965674 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015107.2 -1 reviewed p.R998C 1.000 290 0% 174 17.2% 25 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FGD1 2245 genome.wustl.edu 37 X 54475638 54475638 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004463.2 -1 reviewed p.R738C 0.999 230 0% 114 57.9% 12 100% benign(0.001) tolerated(0.1) neutral(0.286) HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF TRO 7216 genome.wustl.edu 37 X 54956374 54956374 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001039705.1 +1 reviewed p.V1073I 0.000 39 0% 28 28.6% 4 75% benign(0.094) tolerated(0.53) neutral(0.014) NULL APEX2 27301 genome.wustl.edu 37 X 55033665 55033665 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014481.2 +1 reviewed p.R452W 0.048 70 0% 52 38.5% 84 98.8% probably_damaging(0.972) deleterious(0.02) deleterious(0.797) NULL ARHGEF9 23229 genome.wustl.edu 37 X 62875390 62875390 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015185.2 -1 reviewed p.Q428H 1.000 734 0% 590 41.7% 5 100% benign(0.004) deleterious(0.03) neutral(0.364) superfamily_SSF50729 FAM123B 139285 genome.wustl.edu 37 X 63410349 63410349 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_152424.3 -1 reviewed p.W940R 0.963 109 0% 73 47.9% 7 14.2% possibly_damaging(0.896) deleterious(0) deleterious(0.798) NULL PJA1 64219 genome.wustl.edu 37 X 68381347 68381347 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_145119.3 -1 reviewed p.E579K 0.772 97 0% 95 49.5% 52 0% possibly_damaging(0.942) tolerated(0.06) deleterious(0.710) superfamily_RING/U-box FAM155B 27112 genome.wustl.edu 37 X 68725269 68725269 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_015686.2 +1 validated p.A48 0.998 14 0% 14 28.6% 1 100% - - - NULL MED12 9968 genome.wustl.edu 37 X 70348198 70348198 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005120.2 +1 reviewed p.L1088 0.980 306 0% 208 17.8% 29 0% - - - NULL TAF1 6872 genome.wustl.edu 37 X 70608189 70608189 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_004606.3 +1 reviewed p.R864W 1.000 143 0% 100 48% 6 83.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CITED1 4435 genome.wustl.edu 37 X 71521945 71521945 + Silent SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144885.1 -1 reviewed p.G96 0.654 305 0% 185 36.2% 0 - - - - HMMPfam_CITED HDAC8 55869 genome.wustl.edu 37 X 71708853 71708853 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018486.2 -1 reviewed p.R223W 1.000 226 0% 166 45.8% 14 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase PHKA1 5255 genome.wustl.edu 37 X 71846860 71846860 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_002637.3 -1 reviewed p.A585V 1.000 490 0% 380 21.8% 1 0% benign(0.043) tolerated(0.64) neutral(0.005) HMMPfam_PHK_AB ATRX 546 genome.wustl.edu 37 X 76938907 76938907 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000489.3 -1 reviewed p.G614D 0.000 96 0% 69 62.3% 9 88.8% benign(0) tolerated(0.32) neutral(0.024) NULL BRWD3 254065 genome.wustl.edu 37 X 79945475 79945475 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153252.4 -1 reviewed p.R1240Q 1.000 220 0% 175 48.6% 7 85.7% possibly_damaging(0.525) tolerated(0.09) deleterious(0.473) HMMSmart_SM00297,superfamily_Bromodomain RPS6KA6 27330 genome.wustl.edu 37 X 83402051 83402051 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014496.4 -1 reviewed p.R119Q 1.000 419 0% 250 44% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SYTL4 94121 genome.wustl.edu 37 X 99946120 99946120 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001129896.2 -1 reviewed p.S209L 0.565 303 0% 201 43.8% 2 100% benign(0.344) tolerated(0.35) neutral(0.129) HMMPfam_RPH3A_effector NOX1 27035 genome.wustl.edu 37 X 100104924 100104924 + Splice_Site SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_007052.4 -1 reviewed e10-1 1.000 181 0% 142 44.4% 0 - - - - - ARMCX2 9823 genome.wustl.edu 37 X 100911496 100911496 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014782.5 -1 reviewed p.R360H 0.546 169 0% 94 52.1% 87 0% possibly_damaging(0.705) tolerated(0.13) deleterious(0.506) superfamily_ARM-type_fold FAM199X 139231 genome.wustl.edu 37 X 103434305 103434305 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_207318.2 +1 validated p.R338Q 1.000 152 0% 96 52.1% 25 0% benign(0.392) deleterious(0.03) deleterious(0.490) NULL ESX1 80712 genome.wustl.edu 37 X 103499160 103499160 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153448.3 -1 reviewed p.V61I 0.000 112 0% 70 47.1% 0 - benign(0.35) tolerated(0.53) neutral(0.118) NULL SERPINA7 6906 genome.wustl.edu 37 X 105277494 105277494 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000354.5 -1 reviewed p.A415 0.000 173 0% 110 24.5% 0 - - - - NULL MUM1L1 139221 genome.wustl.edu 37 X 105450110 105450110 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000337685 +1 known p.A229T 0.000 239 0% 195 43.1% 0 - benign(0.061) tolerated(0.59) neutral(0.009) NULL TBC1D8B 54885 genome.wustl.edu 37 X 106083300 106083300 + Missense_Mutation SNP A A C novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017752.2 +1 validated p.Q459P 1.000 256 0% 191 45.5% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) superfamily_Ypt/Rab-GAP domain of gyp1p MID2 11043 genome.wustl.edu 37 X 107084467 107084467 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012216.3 +1 reviewed p.R191Q 1.000 77 0% 43 58.1% 1 100% possibly_damaging(0.862) deleterious(0.02) deleterious(0.716) HMMPfam_zf-B_box,HMMSmart_SM00336 IRS4 8471 genome.wustl.edu 37 X 107978633 107978633 + Nonsense_Mutation SNP A A T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003604.2 -1 reviewed p.C314* 0.577 130 0% 82 39% 0 - - - - HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729 RGAG1 57529 genome.wustl.edu 37 X 109697530 109697530 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020769.2 +1 validated p.L1229I 0.074 145 0% 116 47.4% 0 - possibly_damaging(0.945) tolerated(0.34) neutral(0.413) NULL PAK3 5063 genome.wustl.edu 37 X 110366367 110366367 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001128168.1 +1 reviewed p.P12 1.000 239 0% 194 51% 0 - - - - NULL ALG13 79868 genome.wustl.edu 37 X 111002971 111002971 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b ENST00000394780 +1 known p.P1053L 0.003 231 0% 143 42% 22 0% benign(0.427) tolerated(0.16) neutral(0.199) NULL RBMXL3 139804 genome.wustl.edu 37 X 114425890 114425890 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001145346.1 +1 validated p.R629H 0.036 91 0% 75 42.7% 0 - benign(0.041) tolerated(0.22) neutral(0.045) NULL LUZP4 51213 genome.wustl.edu 37 X 114536677 114536677 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_016383.3 +1 validated p.R71H 0.000 191 0% 201 40.8% 0 - unknown(0) - - NULL NKAP 79576 genome.wustl.edu 37 X 119072723 119072723 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_024528.3 -1 reviewed p.W146* 1.000 143 0% 90 48.9% 13 0% - - - NULL THOC2 57187 genome.wustl.edu 37 X 122820444 122820444 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001081550.1 -1 validated p.P241L 1.000 234 0% 166 49.4% 9 100% benign(0.055) tolerated(0.36) neutral(0.024) NULL STAG2 10735 genome.wustl.edu 37 X 123181311 123181311 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001042749.1 +1 validated p.R259* 1.000 122 0% 103 58.3% 5 100% - - - HMMPfam_STAG,superfamily_ARM-type_fold XPNPEP2 7512 genome.wustl.edu 37 X 128886196 128886196 + Missense_Mutation SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003399.5 +1 reviewed p.M298V 0.264 225 0% 167 46.7% 0 - benign(0.012) tolerated(0.63) neutral(0.004) NULL XPNPEP2 7512 genome.wustl.edu 37 X 128894500 128894500 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003399.5 +1 reviewed p.R481C 0.219 336 0% 200 51% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core UTP14A 10813 genome.wustl.edu 37 X 129060301 129060301 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006649.3 +1 reviewed p.A677T 0.007 156 0.6% 90 58.9% 42 0% benign(0.3) tolerated(0.1) neutral(0.379) HMMPfam_Utp14 ZNF280C 55609 genome.wustl.edu 37 X 129349773 129349773 + Missense_Mutation SNP C C A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_017666.4 -1 validated p.K610N 0.908 420 0% 305 12.1% 7 14.2% benign(0.422) deleterious(0.04) deleterious(0.486) NULL IGSF1 3547 genome.wustl.edu 37 X 130408074 130408074 + Nonsense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001555.4 -1 reviewed p.W1286* 1.000 400 0% 307 47.6% 1 100% - - - NULL RAP2C 57826 genome.wustl.edu 37 X 131348204 131348204 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_021183.3 -1 provisional p.V182I 1.000 166 0% 124 42.7% 13 92.3% benign(0.002) tolerated(1) - NULL HS6ST2 90161 genome.wustl.edu 37 X 131763080 131763080 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001077188.1 -1 reviewed p.R370Q 1.000 150 0% 120 53.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HS6ST SAGE1 55511 genome.wustl.edu 37 X 134991797 134991797 + Splice_Site SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018666.2 +1 reviewed e13-1 0.031 201 0% 147 21.8% 0 - - - - - GPR112 139378 genome.wustl.edu 37 X 135429006 135429006 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153834.3 +1 reviewed p.V1047 0.001 259 0% 171 43.9% 0 - - - - NULL GPR112 139378 genome.wustl.edu 37 X 135429360 135429360 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_153834.3 +1 reviewed p.T1165 0.000 237 0% 201 54.2% 0 - - - - NULL HTATSF1 27336 genome.wustl.edu 37 X 135581912 135581912 + Silent SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_014500.4 +1 reviewed p.K114 0.960 227 0.4% 163 43.6% 43 0% - - - NULL MAGEC3 139081 genome.wustl.edu 37 X 140953339 140953339 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_138702.1 +1 reviewed p.G69E 0.000 450 0% 302 45% 0 - unknown(0) - - NULL SLITRK2 84631 genome.wustl.edu 37 X 144906070 144906070 + Silent SNP A A G novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001144003.2 +1 reviewed p.V709 0.994 100 0% 69 47.8% 0 - - - - NULL MAGEA12 4111 genome.wustl.edu 37 X 151900076 151900076 + Missense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005367.5 -1 reviewed p.P242H 0.021 413 0% 296 44.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_MAGE MAGEA3 4102 genome.wustl.edu 37 X 151935539 151935539 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_005362.3 -1 reviewed p.A210T 0.000 448 0% 299 44.1% 0 - possibly_damaging(0.559) deleterious(0.01) deleterious(0.596) HMMPfam_MAGE BCAP31 10134 genome.wustl.edu 37 X 152969516 152969516 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001139457.1 -1 reviewed p.Q192 1.000 155 0% 118 43.2% 284 0% - - - HMMPfam_Bap31 TMEM187 8269 genome.wustl.edu 37 X 153248166 153248166 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_003492.2 +1 reviewed p.R218H 0.000 144 0% 120 46.7% 57 49.1% benign(0.004) tolerated(0.55) neutral(0.007) NULL TKTL1 8277 genome.wustl.edu 37 X 153539311 153539311 + Nonsense_Mutation SNP G G T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_012253.3 +1 validated p.G159* 1.000 271 0% 189 41.3% 0 - - - - HMMPfam_Transketolase_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding) FLNA 2316 genome.wustl.edu 37 X 153581679 153581679 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001110556.1 -1 reviewed p.R2003C 1.000 74 0% 58 31% 447 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin FLNA 2316 genome.wustl.edu 37 X 153590869 153590869 + Missense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001110556.1 -1 reviewed p.R828C 1.000 95 0% 72 51.4% 262 0% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin FLNA 2316 genome.wustl.edu 37 X 153599478 153599478 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001110556.1 -1 reviewed p.Q46* 1.000 78 0% 33 24.2% 126 56.3% - - - PatternScan_ACTININ_1,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain RPL10 6134 genome.wustl.edu 37 X 153627724 153627724 + Silent SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_006013.3 +1 reviewed p.C23 1.000 243 0% 174 44.3% 1487 0% - - - HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e CTAG2 30848 genome.wustl.edu 37 X 153880610 153880610 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_020994.3 -1 reviewed p.E189K 0.000 259 0% 191 39.8% 0 - unknown(0) deleterious(0) - NULL DKC1 1736 genome.wustl.edu 37 X 154003515 154003515 + Silent SNP G G A rs189466923 by1000genomes TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_001363.3 +1 reviewed p.P435 0.000 145 0% 132 38.6% 87 95.4% - - - NULL F8 2157 genome.wustl.edu 37 X 154157159 154157159 + Nonsense_Mutation SNP G G A novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_000132.3 -1 reviewed p.Q1636* 0.028 405 0% 302 46.7% 0 - - - - NULL TMLHE 55217 genome.wustl.edu 37 X 154754197 154754197 + Missense_Mutation SNP C C T novel TCGA-D1-A167-01A-11D-A12J-09 TCGA-D1-A167-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6e105683-342b-4bac-b0ff-24ea97c003c3 a2f9968e-22a1-4771-a267-92d298c12f4b NM_018196.3 -1 reviewed p.R93H 0.997 213 0% 174 43.7% 68 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL