Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain NADK 65220 genome.wustl.edu 37 1 1685086 1685086 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_023018.3 -1 validated p.I368 0.999 63 0% 36 16.7% 91 30.7% - - - HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513) ACTRT2 140625 genome.wustl.edu 37 1 2939371 2939371 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080431.4 +1 reviewed p.R374I 1.000 82 0% 60 25% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain PRDM16 63976 genome.wustl.edu 37 1 3313069 3313069 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022114.3 +1 reviewed p.V196 1.000 139 0% 90 17.8% 0 - - - - HMMSmart_SM00317,superfamily_SET domain NPHP4 261734 genome.wustl.edu 37 1 5926462 5926462 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015102.2 -1 reviewed p.E1205D 0.994 95 0% 72 11.1% 9 11.1% possibly_damaging(0.544) tolerated(0.2) neutral(0.233) NULL RNF207 388591 genome.wustl.edu 37 1 6271107 6271107 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207396.2 +1 validated p.F346 0.991 26 0% 20 20% 13 15.3% - - - NULL PIK3CD 5293 genome.wustl.edu 37 1 9777681 9777681 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005026.3 +1 validated p.M339I 1.000 144 0% 114 33.3% 12 8.3% benign(0.039) tolerated(0.22) neutral(0.044) HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB TARDBP 23435 genome.wustl.edu 37 1 11077011 11077011 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007375.3 +1 reviewed p.E117K 1.000 205 0% 212 22.6% 15 20% possibly_damaging(0.704) deleterious(0) deleterious(0.698) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD MTOR 2475 genome.wustl.edu 37 1 11189845 11189845 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004958.3 -1 reviewed p.F1888L 1.000 156 0% 115 25.2% 72 37.5% possibly_damaging(0.476) deleterious(0.01) deleterious(0.562) HMMPfam_FAT,superfamily_ARM-type_fold C1orf187 374946 genome.wustl.edu 37 1 11766689 11766689 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198545.3 +1 validated p.R125Q 0.004 40 0% 41 22% 1 0% benign(0.011) tolerated(0.42) neutral(0.015) NULL MTHFR 4524 genome.wustl.edu 37 1 11860307 11860307 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005957.4 -1 reviewed p.R183Q 1.000 197 0% 162 27.8% 11 36.3% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_MTHFR,superfamily_FAD-linked oxidoreductase VPS13D 55187 genome.wustl.edu 37 1 12364627 12364627 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015378.2 +1 reviewed p.T2094M 0.000 105 0% 107 14% 1 0% benign(0) tolerated(0.18) neutral(0.056) NULL VPS13D 55187 genome.wustl.edu 37 1 12371534 12371534 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015378.2 +1 reviewed p.D2225G 1.000 87 0% 98 12.2% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRAMEF12 390999 genome.wustl.edu 37 1 12835917 12835917 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080830.1 +1 provisional p.K173N 0.000 319 0% 246 16.3% 0 - benign(0.012) deleterious(0.01) neutral(0.406) superfamily_SSF52047 ARHGEF19 128272 genome.wustl.edu 37 1 16531378 16531378 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153213.3 -1 provisional p.R595W 1.000 51 0% 27 14.8% 83 38.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ARHGEF10L 55160 genome.wustl.edu 37 1 17945930 17945930 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018125.3 +1 validated p.S311N 1.000 21 0% 16 25% 20 50% possibly_damaging(0.872) deleterious(0.01) deleterious(0.745) superfamily_DBL homology domain (DH-domain) IGSF21 84966 genome.wustl.edu 37 1 18703297 18703297 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032880.3 +1 validated p.E369K 1.000 33 0% 34 20.6% 0 - possibly_damaging(0.81) tolerated(0.07) deleterious(0.624) HMMSmart_IG,superfamily_SSF48726 ALDH4A1 8659 genome.wustl.edu 37 1 19199402 19199402 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003748.3 -1 reviewed p.S543 0.290 110 0% 76 13.2% 28 28.5% - - - HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH EIF4G3 8672 genome.wustl.edu 37 1 21154190 21154190 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003760.3 -1 validated p.E1341* 1.000 115 0% 100 17% 3 0% - - - NULL EIF4G3 8672 genome.wustl.edu 37 1 21268653 21268653 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003760.3 -1 validated p.R276* 0.689 234 0% 214 19.6% 15 6.6% - - - NULL NBPF3 84224 genome.wustl.edu 37 1 21800014 21800014 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032264.2 +1 validated p.V292 0.000 440 0.2% 320 26.3% 5 40% - - - HMMPfam_DUF1220 RHD 6007 genome.wustl.edu 37 1 25617161 25617161 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016124.3 +1 reviewed p.S122L 0.003 485 0.2% 322 20.5% 0 - possibly_damaging(0.598) deleterious(0.01) deleterious(0.613) HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909) UBXN11 91544 genome.wustl.edu 37 1 26620710 26620710 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_183008.2 -1 reviewed p.K182T 1.000 136 0% 80 27.5% 44 59% probably_damaging(0.998) tolerated(0.5) deleterious(0.484) NULL ARID1A 8289 genome.wustl.edu 37 1 27106354 27106354 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006015.4 +1 reviewed p.R1989* 1.000 155 0% 126 13.5% 74 31% - - - NULL PTAFR 5724 genome.wustl.edu 37 1 28476507 28476507 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000952.4 -1 validated p.N342K 0.352 58 0% 47 12.8% 10 20% benign(0.003) tolerated(0.06) neutral(0.323) NULL SNRNP40 9410 genome.wustl.edu 37 1 31762266 31762266 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004814.2 -1 reviewed p.S122 1.000 150 0% 164 36% 103 48.5% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 TINAGL1 64129 genome.wustl.edu 37 1 32050329 32050329 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022164.2 +1 validated p.E211D 0.987 68 0% 72 36.1% 59 49.1% benign(0.004) tolerated(0.66) neutral(0.003) HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases BSDC1 55108 genome.wustl.edu 37 1 32832252 32832252 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143888.1 -1 validated p.E439K 1.000 30 0% 22 22.7% 37 13.5% possibly_damaging(0.927) deleterious(0.01) deleterious(0.780) NULL SYNC 81493 genome.wustl.edu 37 1 33161204 33161204 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030786.2 -1 reviewed p.E165D 0.426 138 0% 95 29.5% 0 - benign(0) tolerated(0.08) neutral(0.300) NULL ZMYM6 9204 genome.wustl.edu 37 1 35453320 35453320 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007167.3 -1 validated p.S1121 1.000 67 0% 86 27.9% 0 - - - - NULL EIF2C3 192669 genome.wustl.edu 37 1 36505935 36505935 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024852.2 +1 reviewed p.R689* 1.000 133 1.5% 145 20% 2 50% - - - HMMPfam_Piwi,superfamily_RNaseH_fold CSF3R 1441 genome.wustl.edu 37 1 36932415 36932415 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_156039.2 -1 reviewed p.L712P 1.000 38 0% 33 18.2% 9 0% probably_damaging(0.999) tolerated(0.05) deleterious(0.836) NULL GRIK3 2899 genome.wustl.edu 37 1 37282846 37282846 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000831.3 -1 reviewed p.R636C 0.927 138 0% 156 30.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850 SF3A3 10946 genome.wustl.edu 37 1 38453296 38453296 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006802.2 -1 reviewed p.F84L 1.000 137 0% 104 26.9% 3 66.6% possibly_damaging(0.94) deleterious(0) deleterious(0.830) NULL GJA9 81025 genome.wustl.edu 37 1 39340268 39340268 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030772.3 -1 provisional p.T501 0.936 89 0% 101 24.8% 0 - - - - NULL MACF1 23499 genome.wustl.edu 37 1 39800731 39800731 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033044.2 +1 reviewed p.E1264G 0.555 158 0% 174 29.3% 0 - benign(0) - - superfamily_SSF75399 MACF1 23499 genome.wustl.edu 37 1 39898788 39898788 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000372925 +1 known p.L2784I 1.000 208 0% 173 35.3% 7 28.5% - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat MACF1 23499 genome.wustl.edu 37 1 39908227 39908227 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000372925 +1 known p.R3309C 0.014 41 0% 39 30.8% 15 40% - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SMAP2 64744 genome.wustl.edu 37 1 40872452 40872452 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022733.1 +1 provisional p.R50* 1.000 109 0% 111 35.1% 24 20.8% - - - HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain SLFNL1 200172 genome.wustl.edu 37 1 41481811 41481811 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144990.3 -1 validated p.H397 0.000 55 0% 57 22.8% 3 0% - - - NULL HIVEP3 59269 genome.wustl.edu 37 1 42050260 42050260 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024503.3 -1 validated p.S70F 1.000 93 0% 95 18.9% 0 - possibly_damaging(0.888) deleterious(0.01) deleterious(0.753) PatternScan_AIPM_HOMOCIT_SYNTH_1 WDR65 149465 genome.wustl.edu 37 1 43647376 43647376 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152498.3 +1 validated p.F110C 0.996 133 0% 129 23.3% 1 0% probably_damaging(1) tolerated(0.12) deleterious(0.760) superfamily_WD40_like ST3GAL3 6487 genome.wustl.edu 37 1 44303915 44303915 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_174963.2 +1 reviewed p.Y147 0.991 102 0% 96 42.7% 2 50% - - - NULL PIK3R3 8503 genome.wustl.edu 37 1 46597552 46597552 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001114172.1 -1 validated p.E25* 1.000 130 0% 150 16.7% 24 45.8% - - - NULL LURAP1 541468 genome.wustl.edu 37 1 46685389 46685389 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001013615.2 +1 validated p.D73N 1.000 57 0% 47 23.4% 2 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL BEND5 79656 genome.wustl.edu 37 1 49193581 49193581 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024603.2 -1 validated p.E415* 1.000 481 0.2% 428 32% 0 - - - - NULL FAF1 11124 genome.wustl.edu 37 1 50941250 50941250 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007051.2 -1 reviewed p.F585L 1.000 80 0% 74 31.1% 13 30.7% benign(0.16) tolerated(0.36) neutral(0.035) HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like FAF1 11124 genome.wustl.edu 37 1 50957422 50957422 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007051.2 -1 reviewed p.R516C 1.000 232 0% 238 16.8% 41 21.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZFYVE9 9372 genome.wustl.edu 37 1 52704341 52704341 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004799.2 +1 reviewed p.E418* 1.000 56 0% 39 25.6% 6 0% - - - NULL ZFYVE9 9372 genome.wustl.edu 37 1 52747450 52747450 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004799.2 +1 reviewed p.F996C 1.000 181 0% 193 19.2% 9 66.6% possibly_damaging(0.947) deleterious(0) deleterious(0.835) NULL ORC1 4998 genome.wustl.edu 37 1 52859241 52859241 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004153.2 -1 reviewed p.R319I 0.994 353 0% 319 30.1% 1 0% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) NULL ZCCHC11 23318 genome.wustl.edu 37 1 52940803 52940803 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001009881.1 -1 validated p.P810T 0.984 157 0% 186 17.7% 2 0% benign(0.002) tolerated(0.18) neutral(0.056) NULL SLC1A7 6512 genome.wustl.edu 37 1 53556427 53556427 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006671.4 -1 validated p.I361 0.559 84 0% 66 24.2% 0 - - - - HMMPfam_SDF HSPB11 51668 genome.wustl.edu 37 1 54387365 54387365 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016126.2 -1 provisional p.V132I 0.049 191 0% 163 24.5% 19 15.7% benign(0) tolerated(0.55) neutral(0.007) NULL HEATR8 374977 genome.wustl.edu 37 1 55139740 55139740 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039464.2 +1 validated p.H618Y 0.985 178 0% 162 32.1% 0 - benign(0) tolerated(0.06) neutral(0.323) superfamily_ARM repeat BSND 7809 genome.wustl.edu 37 1 55472814 55472814 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_057176.2 +1 reviewed p.P139 0.000 57 0% 59 16.9% 0 - - - - NULL OMA1 115209 genome.wustl.edu 37 1 58971763 58971763 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145243.3 -1 provisional p.R445Q 1.000 213 0% 170 11.2% 15 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M48 C1orf87 127795 genome.wustl.edu 37 1 60505660 60505660 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152377.1 -1 predicted p.E226* 0.011 152 0% 200 32% 0 - - - - superfamily_EF-hand KANK4 163782 genome.wustl.edu 37 1 62739623 62739623 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181712.4 -1 validated p.R385* 0.743 167 0% 148 23.6% 1 0% - - - NULL ROR1 4919 genome.wustl.edu 37 1 64515641 64515641 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005012.2 +1 validated p.V148I 1.000 139 0% 89 19.1% 2 0% probably_damaging(0.982) deleterious(0.05) deleterious(0.772) HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin LEPR 3953 genome.wustl.edu 37 1 66102247 66102247 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002303.4 +1 reviewed p.K1016T 0.001 50 0% 69 33.3% 0 - benign(0.077) deleterious(0.03) neutral(0.370) NULL INSL5 10022 genome.wustl.edu 37 1 67263855 67263855 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005478.3 -1 reviewed p.P83 0.000 132 0% 113 22.1% 1 100% - - - HMMSmart_IlGF,superfamily_Insulin-like MIR1262 100302279 genome.wustl.edu 37 1 68649229 68649229 + RNA SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000408276 -1 known NULL 0.000 176 0% 164 15.9% 0 - - - - - LRRC7 57554 genome.wustl.edu 37 1 70226019 70226019 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020794.2 +1 validated p.F44 0.999 178 0.6% 138 28.3% 0 - - - - superfamily_L domain-like LRRC40 55631 genome.wustl.edu 37 1 70644664 70644664 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017768.4 -1 validated p.L225S 1.000 86 0% 120 27.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRR_1,superfamily_SSF52058 LRRC40 55631 genome.wustl.edu 37 1 70652957 70652957 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017768.4 -1 validated p.L133R 1.000 179 0% 201 17.4% 3 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_LRR_1,superfamily_SSF52058 LRRIQ3 127255 genome.wustl.edu 37 1 74540390 74540390 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001105659.1 -1 provisional p.D318Y 0.962 205 0% 225 28.4% 0 - unknown(0) - - NULL C1orf173 127254 genome.wustl.edu 37 1 75097441 75097441 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001002912.4 -1 validated p.R259C 0.998 465 0% 464 19.8% 1 100% probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL MSH4 4438 genome.wustl.edu 37 1 76343984 76343984 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002440.2 +1 validated p.E507D 1.000 188 0% 154 19.5% 0 - possibly_damaging(0.672) deleterious(0) deleterious(0.682) HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV ZZZ3 26009 genome.wustl.edu 37 1 78098546 78098546 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015534.4 -1 provisional p.R165Q 1.000 208 0.5% 192 34.9% 5 80% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL LPHN2 23266 genome.wustl.edu 37 1 82402423 82402423 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012302.2 +1 reviewed p.R100Q 1.000 381 0% 269 32% 14 35.7% probably_damaging(1) tolerated(0.07) deleterious(0.819) HMMPfam_Gal_Lectin TTLL7 79739 genome.wustl.edu 37 1 84412924 84412924 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024686.4 -1 validated p.R130Q 1.000 261 0% 250 28.8% 0 - benign(0.309) tolerated(0.1) neutral(0.383) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like RPF1 80135 genome.wustl.edu 37 1 84961130 84961130 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025065.6 +1 validated p.E231* 1.000 188 0% 199 16.1% 7 0% - - - HMMPfam_Brix C1orf52 148423 genome.wustl.edu 37 1 85718341 85718341 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198077.3 -1 validated p.P174S 1.000 372 0% 346 22.3% 8 25% benign(0.013) tolerated(0.99) neutral(0.001) NULL ZNHIT6 54680 genome.wustl.edu 37 1 86171989 86171989 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017953.3 -1 validated p.R258* 0.999 363 0% 323 34.1% 3 33.3% - - - NULL CLCA2 9635 genome.wustl.edu 37 1 86913199 86913199 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006536.5 +1 reviewed p.H574 0.729 84 0% 86 22.1% 0 - - - - HMMPfam_DUF1973 GBP3 2635 genome.wustl.edu 37 1 89477439 89477439 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018284.2 -1 reviewed p.K380N 0.373 95 0% 97 21.6% 6 33.3% benign(0.16) tolerated(0.13) neutral(0.267) HMMPfam_GBP_C,superfamily_GBP GBP5 115362 genome.wustl.edu 37 1 89730585 89730585 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134486.1 -1 validated p.E311D 0.997 184 0% 125 20.8% 27 14.8% probably_damaging(0.999) tolerated(0.19) deleterious(0.540) HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain LRRC8D 55144 genome.wustl.edu 37 1 90399282 90399282 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134479.1 +1 validated p.E219K 1.000 67 0% 74 10.8% 5 0% probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL LRRC8D 55144 genome.wustl.edu 37 1 90400674 90400674 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134479.1 +1 validated p.K683Q 1.000 83 0% 105 33.3% 7 57.1% benign(0.046) tolerated(0.32) neutral(0.026) superfamily_SSF52058 EPHX4 253152 genome.wustl.edu 37 1 92518159 92518159 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173567.4 +1 validated p.V267 0.479 178 0% 195 9.7% 0 - - - - HMMPfam_Abhydrolase_1,superfamily_SSF53474 RPL5 6125 genome.wustl.edu 37 1 93303039 93303039 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000969.3 +1 reviewed p.S185F 1.000 158 0% 161 16.8% 2017 30.6% benign(0.403) tolerated(0.07) neutral(0.449) superfamily_Translational machinery components ABCA4 24 genome.wustl.edu 37 1 94526126 94526126 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000350.2 -1 reviewed p.S709 0.018 103 0% 76 18.4% 0 - - - - NULL ARHGAP29 9411 genome.wustl.edu 37 1 94639452 94639452 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004815.3 -1 validated p.L1253 0.911 102 0% 95 11.6% 1 0% - - - NULL SLC44A3 126969 genome.wustl.edu 37 1 95358065 95358065 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001114106.1 +1 validated p.E617* 1.000 267 0% 251 18.3% 9 33.3% - - - HMMPfam_DUF580 TMEM56 148534 genome.wustl.edu 37 1 95609537 95609537 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152487.2 +1 validated p.S27N 0.999 317 0% 339 28.3% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL SASS6 163786 genome.wustl.edu 37 1 100572978 100572978 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_194292.1 -1 validated p.Q426 0.886 153 0% 151 18.5% 0 - - - - NULL DBT 1629 genome.wustl.edu 37 1 100676260 100676260 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001918.2 -1 reviewed p.I336R 1.000 309 0% 314 29.3% 1 100% possibly_damaging(0.913) deleterious(0) deleterious(0.809) HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases CDC14A 8556 genome.wustl.edu 37 1 100949997 100949997 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033312.2 +1 reviewed p.R376Q 0.998 148 0% 128 33.6% 3 33.3% benign(0.034) tolerated(0.18) neutral(0.058) NULL VCAM1 7412 genome.wustl.edu 37 1 101198147 101198147 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001078.2 +1 reviewed p.I567L 0.000 55 0% 64 29.7% 0 - benign(0.006) tolerated(0.77) neutral(0.001) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin SLC25A24 29957 genome.wustl.edu 37 1 108703869 108703869 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013386.3 -1 validated p.D149N 1.000 206 0% 186 16.7% 11 18.1% benign(0.085) deleterious(0.03) neutral(0.370) superfamily_EF-hand SLC6A17 388662 genome.wustl.edu 37 1 110740725 110740725 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001010898.2 +1 validated p.N615H 1.000 88 0% 51 29.4% 0 - benign(0.186) tolerated(0.25) neutral(0.054) HMMPfam_SNF KCNA3 3738 genome.wustl.edu 37 1 111216985 111216985 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002232.3 -1 reviewed p.F149 1.000 35 0% 37 16.2% 1 0% - - - HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold KCND3 3752 genome.wustl.edu 37 1 112323370 112323370 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004980.3 -1 reviewed p.S438L 1.000 78 0% 60 31.7% 1 100% benign(0.045) deleterious(0.02) neutral(0.386) NULL WNT2B 7482 genome.wustl.edu 37 1 113057617 113057617 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024494.2 +1 reviewed p.E102K 1.000 59 0% 40 40% 2 100% possibly_damaging(0.659) tolerated(0.68) neutral(0.235) HMMPfam_wnt,HMMSmart_SM00097 ST7L 54879 genome.wustl.edu 37 1 113126649 113126649 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017744.4 -1 reviewed p.I267M 1.000 236 0% 206 21.4% 4 50% probably_damaging(0.978) tolerated(0.23) neutral(0.462) HMMPfam_ST7 LOC128322 128322 genome.wustl.edu 37 1 113290846 113290846 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_060943.1 +1 model p.R44* 1.000 38 0% 34 14.7% 0 - - - - HMMPfam_NTF2,superfamily_NTF2-like MAGI3 260425 genome.wustl.edu 37 1 114165484 114165484 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142782.1 +1 validated p.R410* 0.978 258 0% 236 33.1% 3 0% - - - HMMPfam_PDZ,superfamily_PDZ PTPN22 26191 genome.wustl.edu 37 1 114380974 114380974 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015967.4 -1 reviewed p.E350* 0.001 495 0% 425 29.9% 2 0% - - - NULL TRIM33 51592 genome.wustl.edu 37 1 114973522 114973522 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015906.3 -1 reviewed p.V351 1.000 377 0% 316 17.1% 0 - - - - HMMSmart_SM00502 GDAP2 54834 genome.wustl.edu 37 1 118439577 118439577 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017686.3 -1 validated p.V277 0.992 204 0% 213 21.6% 4 50% - - - NULL GJA8 2703 genome.wustl.edu 37 1 147380898 147380898 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005267.4 +1 reviewed p.E272D 1.000 55 0% 85 29.4% 0 - benign(0.021) tolerated(0.24) neutral(0.038) HMMPfam_Connexin50 MTMR11 10903 genome.wustl.edu 37 1 149906973 149906973 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181873.3 -1 validated p.K53T 1.000 36 0% 45 33.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_SSF50729 PRPF3 9129 genome.wustl.edu 37 1 150318904 150318904 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004698.2 +1 reviewed p.F594V 1.000 151 0% 156 29.5% 17 58.8% probably_damaging(0.993) deleterious(0.01) deleterious(0.856) HMMPfam_PRP3 GABPB2 126626 genome.wustl.edu 37 1 151065743 151065743 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144618.2 +1 validated p.D118Y 1.000 198 0% 168 23.8% 7 14.2% benign(0.382) deleterious(0.02) deleterious(0.505) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK PIP5K1A 8394 genome.wustl.edu 37 1 151204767 151204767 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135638.1 +1 validated p.R138C 1.000 333 0% 271 31.4% 45 42.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00330,superfamily_SAICAR synthase-like RORC 6097 genome.wustl.edu 37 1 151780029 151780029 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005060.3 -1 reviewed p.I492 0.940 122 0% 133 12.8% 23 0% - - - HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain HRNR 388697 genome.wustl.edu 37 1 152193663 152193663 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001009931.1 -1 validated p.L148I 0.000 167 0% 213 21.1% 0 - benign(0.126) - - NULL FLG 2312 genome.wustl.edu 37 1 152282835 152282835 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002016.1 -1 reviewed p.V1509 0.001 447 0% 343 29.7% 0 - - - - NULL CRNN 49860 genome.wustl.edu 37 1 152383193 152383193 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016190.2 -1 reviewed p.E122A 0.004 102 0% 84 13.1% 0 - benign(0.101) tolerated(0.73) neutral(0.009) NULL KPRP 448834 genome.wustl.edu 37 1 152732460 152732460 + Silent SNP C C T rs146826460 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001025231.1 +1 provisional p.F132 0.032 166 0% 136 19.9% 0 - - - - NULL S100A12 6283 genome.wustl.edu 37 1 153346500 153346500 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000368736 -1 known p.K52N 0.000 81 0% 81 19.8% 0 - probably_damaging(0.999) tolerated(0.1) deleterious(0.777) superfamily_SSF47473 CHTOP 26097 genome.wustl.edu 37 1 153615768 153615768 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015607.2 +1 provisional p.R157* 1.000 181 0% 183 37.2% 69 2.8% - - - NULL TPM3 7170 genome.wustl.edu 37 1 154143145 154143145 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152263.2 -1 reviewed p.L229I 1.000 235 0% 254 37.8% 92 55.4% benign(0.328) deleterious(0.01) deleterious(0.509) HMMPfam_Tropomyosin ASH1L 55870 genome.wustl.edu 37 1 155450046 155450046 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018489.2 -1 reviewed p.I872S 1.000 132 0% 149 12.1% 2 0% benign(0.037) tolerated(0.24) neutral(0.040) NULL ISG20L2 81875 genome.wustl.edu 37 1 156693997 156693997 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030980.1 -1 provisional p.E297D 0.995 175 0% 125 28% 31 45.1% possibly_damaging(0.873) tolerated(0.11) deleterious(0.611) HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T HDGF 3068 genome.wustl.edu 37 1 156714904 156714904 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001126050.1 -1 reviewed p.E83K 1.000 139 0% 120 10.8% 89 4.4% benign(0) tolerated(0.42) neutral(0.014) HMMPfam_PWWP,superfamily_SSF63748 INSRR 3645 genome.wustl.edu 37 1 156814386 156814386 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014215.1 -1 validated p.R869* 0.453 43 0% 52 26.9% 1 0% - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like PEAR1 375033 genome.wustl.edu 37 1 156880120 156880120 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080471.1 +1 provisional p.E591D 0.002 58 0% 33 18.2% 1 100% benign(0.136) tolerated(0.59) neutral(0.016) HMMSmart_EGF,HMMPfam_EGF_2 LRRC71 149499 genome.wustl.edu 37 1 156902271 156902271 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144702.2 +1 validated p.Q499H 0.996 67 0% 39 15.4% 22 31.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_RNI-like CD1E 913 genome.wustl.edu 37 1 158325110 158325110 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030893.2 +1 reviewed p.L126 0.015 115 0% 110 22.7% 0 - - - - superfamily_MHC antigen-recognition domain OR10T2 128360 genome.wustl.edu 37 1 158368817 158368817 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004475.1 -1 provisional p.S147Y 0.005 95 0% 83 22.9% 0 - possibly_damaging(0.513) tolerated(0.17) neutral(0.231) HMMPfam_7tm_1,superfamily_SSF81321 OR10X1 128367 genome.wustl.edu 37 1 158548992 158548992 + Missense_Mutation SNP G G C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004477.1 -1 provisional p.T233S 0.850 160 0% 84 17.9% 0 - probably_damaging(0.998) tolerated(1) deleterious(0.474) HMMPfam_7tm_1,superfamily_SSF81321 MNDA 4332 genome.wustl.edu 37 1 158812191 158812191 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002432.1 +1 reviewed p.R83Q 0.000 122 0% 135 31.1% 0 - benign(0.236) deleterious(0.02) neutral(0.407) HMMPfam_PAAD_DAPIN DARC 2532 genome.wustl.edu 37 1 159175365 159175365 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001122951.1 +1 reviewed p.E48K 0.001 126 0% 57 42.1% 20 0% possibly_damaging(0.46) deleterious(0.04) deleterious(0.500) NULL FCER1A 2205 genome.wustl.edu 37 1 159273839 159273839 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002001.2 +1 reviewed p.H66 0.666 108 0% 88 27.3% 0 - - - - HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 IGSF9 57549 genome.wustl.edu 37 1 159901259 159901259 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135050.1 -1 validated p.T499 0.000 56 0% 43 23.3% 34 61.7% - - - superfamily_SSF48726 CASQ1 844 genome.wustl.edu 37 1 160165306 160165306 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001231.4 +1 reviewed p.F205 1.000 204 0% 148 15.5% 0 - - - - HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd LY9 4063 genome.wustl.edu 37 1 160769745 160769745 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002348.2 +1 validated p.I109 0.001 127 0% 82 14.6% 0 - - - - HMMSmart_SM00409,superfamily_Immunoglobulin CD244 51744 genome.wustl.edu 37 1 160801181 160801181 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016382.3 -1 reviewed p.R352* 0.011 174 0% 191 34.6% 0 - - - - NULL ATF6 22926 genome.wustl.edu 37 1 161833097 161833097 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007348.2 +1 validated p.R572* 1.000 206 0% 192 19.3% 36 11.1% - - - NULL HSD17B7 51478 genome.wustl.edu 37 1 162775260 162775260 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016371.2 +1 validated p.R294I 0.009 235 0% 176 10.2% 0 - benign(0.156) tolerated(0.1) neutral(0.300) NULL LMX1A 4009 genome.wustl.edu 37 1 165175228 165175228 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_177398.3 -1 validated p.M287I 1.000 147 0% 119 27.7% 0 - benign(0.009) deleterious(0.04) neutral(0.349) NULL DCAF6 55827 genome.wustl.edu 37 1 167956812 167956812 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018442.2 +1 validated p.I173T 1.000 221 0% 227 21.1% 28 39.2% benign(0.011) tolerated(0.69) neutral(0.003) superfamily_WD40_like GPR161 23432 genome.wustl.edu 37 1 168066065 168066065 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153832.1 -1 provisional p.V260 0.989 49 0% 33 42.4% 12 50% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like DPT 1805 genome.wustl.edu 37 1 168665805 168665805 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001937.3 -1 reviewed p.C196 0.941 269 0% 195 29.2% 0 - - - - NULL F5 2153 genome.wustl.edu 37 1 169487731 169487731 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000130.4 -1 reviewed p.K2088N 0.983 388 0% 392 27.3% 0 - probably_damaging(0.996) tolerated(0.07) deleterious(0.780) HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like SELP 6403 genome.wustl.edu 37 1 169578790 169578790 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003005.3 -1 reviewed p.R429W 0.000 124 0% 105 17.1% 2 0% benign(0.022) deleterious(0.01) neutral(0.407) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain TNR 7143 genome.wustl.edu 37 1 175325554 175325554 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003285.2 -1 validated p.R1007W 1.000 243 0% 168 38.1% 0 - possibly_damaging(0.893) deleterious(0.03) deleterious(0.716) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ASTN1 460 genome.wustl.edu 37 1 176857271 176857271 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004319.1 -1 validated p.R1004* 1.000 103 0% 85 38.8% 2 0% - - - NULL SOAT1 6646 genome.wustl.edu 37 1 179322776 179322776 + Nonstop_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003101.4 +1 provisional p.*551Y 1.000 400 0% 386 26.7% 18 44.4% - - - NULL AXDND1 126859 genome.wustl.edu 37 1 179351863 179351863 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144696.4 +1 validated p.E204* 1.000 211 0% 196 36.2% 0 - - - - NULL CEP350 9857 genome.wustl.edu 37 1 180049679 180049679 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014810.4 +1 reviewed p.S2003P 0.999 142 0% 143 16.1% 4 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CEP350 9857 genome.wustl.edu 37 1 180061964 180061964 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014810.4 +1 reviewed p.L2242I 0.001 75 0% 71 9.9% 0 - possibly_damaging(0.521) tolerated(0.16) neutral(0.235) NULL CACNA1E 777 genome.wustl.edu 37 1 181702853 181702853 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000721.2 +1 reviewed p.V1077M 0.984 18 5.6% 12 41.7% 0 - benign(0.005) deleterious(0.03) neutral(0.364) superfamily_Voltage-gated potassium channels CACNA1E 777 genome.wustl.edu 37 1 181750634 181750634 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000721.2 +1 reviewed p.R1780I 1.000 65 0% 64 23.4% 0 - probably_damaging(0.984) deleterious(0) deleterious(0.875) NULL GLUL 2752 genome.wustl.edu 37 1 182356278 182356278 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001033044.2 -1 reviewed p.R106* 1.000 100 0% 72 12.5% 147 0.6% - - - superfamily_Glutamine synthetase N-terminal domain LAMC2 3918 genome.wustl.edu 37 1 183200138 183200138 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005562.2 +1 reviewed p.R586Q 0.871 313 0% 229 23.1% 193 31% benign(0.402) tolerated(0.7) neutral(0.131) HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181 HMCN1 83872 genome.wustl.edu 37 1 185878628 185878628 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031935.2 +1 reviewed p.R261C 1.000 322 0% 299 23.1% 0 - probably_damaging(0.968) deleterious(0) deleterious(0.855) NULL HMCN1 83872 genome.wustl.edu 37 1 185892647 185892647 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031935.2 +1 reviewed p.R383* 0.986 339 0% 333 29.4% 0 - - - - NULL HMCN1 83872 genome.wustl.edu 37 1 185939559 185939559 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031935.2 +1 reviewed p.D769N 0.998 200 0% 194 19.1% 0 - probably_damaging(0.98) tolerated(0.5) neutral(0.434) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin TPR 7175 genome.wustl.edu 37 1 186337033 186337033 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003292.2 -1 reviewed p.L138F 1.000 455 0% 385 27.3% 0 - benign(0.308) deleterious(0.01) deleterious(0.502) NULL PLA2G4A 5321 genome.wustl.edu 37 1 186919790 186919790 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024420.2 +1 reviewed p.E422D 1.000 34 0% 37 35.1% 8 12.5% probably_damaging(0.992) tolerated(0.36) neutral(0.468) HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like CFH 3075 genome.wustl.edu 37 1 196714946 196714946 + Splice_Site SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000186.3 +1 reviewed e21-1 0.448 321 0.6% 267 10.5% 0 - - - - - ASPM 259266 genome.wustl.edu 37 1 197055972 197055972 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018136.4 -1 reviewed p.F3431C 0.971 329 0% 304 30.9% 0 - benign(0.003) tolerated(0.1) neutral(0.286) NULL ASPM 259266 genome.wustl.edu 37 1 197072076 197072076 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018136.4 -1 reviewed p.S2102Y 1.000 94 0% 93 24.7% 1 100% possibly_damaging(0.691) deleterious(0) deleterious(0.692) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases ASPM 259266 genome.wustl.edu 37 1 197073079 197073079 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018136.4 -1 reviewed p.R1768W 0.000 97 0% 113 22.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF14 9928 genome.wustl.edu 37 1 200562829 200562829 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014875.2 -1 validated p.G873E 1.000 360 0% 345 25.5% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA NAV1 89796 genome.wustl.edu 37 1 201762974 201762974 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020443.4 +1 reviewed p.R1126* 1.000 140 0% 114 32.5% 8 0% - - - NULL ATP2B4 493 genome.wustl.edu 37 1 203667374 203667374 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001684.3 +1 reviewed p.E95* 1.000 171 0.6% 181 24.3% 3 0% - - - HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M PIK3C2B 5287 genome.wustl.edu 37 1 204394825 204394825 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002646.3 -1 reviewed p.I1544M 0.997 468 0% 414 20.3% 3 33.3% benign(0.375) tolerated(0.09) neutral(0.416) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) NFASC 23114 genome.wustl.edu 37 1 204956555 204956555 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015090.3 +1 reviewed p.A930V 1.000 200 0% 216 22.7% 0 - benign(0.002) tolerated(0.6) neutral(0.004) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like SLC26A9 115019 genome.wustl.edu 37 1 205895723 205895723 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_134325.2 -1 reviewed p.K443N 1.000 233 0% 206 35% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sulfate_transp SRGAP2 23380 genome.wustl.edu 37 1 206589255 206589255 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000414359 +1 known p.K378Q 1.000 96 0% 92 40.2% 2 0% probably_damaging(0.974) tolerated(0.35) neutral(0.436) NULL FCAMR 83953 genome.wustl.edu 37 1 207133097 207133097 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001122979.2 -1 validated p.S233Y 0.022 210 0% 146 10.3% 0 - unknown(0) - - NULL CD55 1604 genome.wustl.edu 37 1 207498083 207498083 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001114752.1 +1 reviewed p.E156K 0.027 121 0% 116 19.8% 22 22.7% possibly_damaging(0.869) deleterious(0.03) deleterious(0.702) HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module HSD11B1 3290 genome.wustl.edu 37 1 209905842 209905842 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005525.2 +1 reviewed p.F193L 0.998 361 0% 249 20.5% 1 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains C1orf74 148304 genome.wustl.edu 37 1 209956246 209956246 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152485.2 -1 predicted p.R245Q 0.001 101 0% 92 22.8% 1 100% benign(0.036) tolerated(0.17) neutral(0.061) NULL SLC30A1 7779 genome.wustl.edu 37 1 211749439 211749439 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021194.2 -1 validated p.S272Y 0.997 97 0% 80 28.7% 9 44.4% benign(0) tolerated(0.61) neutral(0.004) HMMPfam_Cation_efflux USH2A 7399 genome.wustl.edu 37 1 215955471 215955471 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_206933.2 -1 reviewed p.F3551L 0.935 174 0% 161 33.5% 0 - probably_damaging(0.996) deleterious(0.03) deleterious(0.826) HMMSmart_SM00060,superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 215987234 215987234 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_206933.2 -1 reviewed p.G3195R 0.645 187 0% 177 24.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00060,superfamily_Fibronectin type III SPATA17 128153 genome.wustl.edu 37 1 217975157 217975157 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138796.2 +1 provisional p.R324 0.996 176 0% 186 31.2% 4 75% - - - NULL IARS2 55699 genome.wustl.edu 37 1 220320949 220320949 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018060.3 +1 validated p.R1004Q 0.971 159 0% 158 20.3% 58 18.9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_zf-FPG_IleRS DUSP10 11221 genome.wustl.edu 37 1 221875889 221875889 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007207.3 -1 reviewed p.V438 1.000 266 0% 228 17.5% 24 20.8% - - - HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II DUSP10 11221 genome.wustl.edu 37 1 221912353 221912353 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007207.3 -1 reviewed p.R245Q 1.000 207 0% 169 29.6% 13 53.8% possibly_damaging(0.512) tolerated(0.55) neutral(0.179) HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase HHIPL2 79802 genome.wustl.edu 37 1 222716939 222716939 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024746.3 -1 validated p.R305Q 0.999 105 0% 90 17.8% 0 - probably_damaging(1) tolerated(0.17) deleterious(0.559) superfamily_Quino_gluc_DH CAPN2 824 genome.wustl.edu 37 1 223905507 223905507 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001748.4 +1 reviewed p.R94H 1.000 73 0% 57 14% 22 4.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases DNAH14 127602 genome.wustl.edu 37 1 225142781 225142781 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001373.1 +1 validated p.L66F 0.077 118 0% 135 17% 0 - probably_damaging(0.991) tolerated(0.1) deleterious(0.730) NULL DNAH14 127602 genome.wustl.edu 37 1 225230773 225230773 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001373.1 +1 validated p.K575N 0.000 89 0% 126 23.8% 0 - unknown(0) deleterious(0) - NULL ENAH 55740 genome.wustl.edu 37 1 225742715 225742715 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001008493.1 -1 validated p.R81Q 1.000 285 0% 241 11.6% 93 4.3% unknown(0) deleterious(0.02) - HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like LIN9 286826 genome.wustl.edu 37 1 226453972 226453972 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173083.2 -1 provisional p.R309Q 0.938 214 0% 257 26.5% 0 - benign(0.029) tolerated(0.35) neutral(0.022) NULL LIN9 286826 genome.wustl.edu 37 1 226483622 226483622 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173083.2 -1 provisional p.R78Q 1.000 282 0% 312 26.6% 0 - probably_damaging(0.996) tolerated(0.05) deleterious(0.807) NULL ZNF678 339500 genome.wustl.edu 37 1 227843477 227843477 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178549.3 +1 validated p.R509I 0.979 96 0% 88 25% 1 0% benign(0.005) tolerated(0.12) neutral(0.261) superfamily_SSF57667 OBSCN 84033 genome.wustl.edu 37 1 228548105 228548105 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052843.2 +1 reviewed p.I6504 0.072 12 0% 19 36.8% 4 50% - - - NULL COG2 22796 genome.wustl.edu 37 1 230804483 230804483 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007357.2 +1 reviewed p.H183N 1.000 295 0% 281 30.6% 10 50% possibly_damaging(0.799) tolerated(0.21) neutral(0.345) NULL EXOC8 149371 genome.wustl.edu 37 1 231472303 231472303 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175876.3 -1 validated p.E397K 1.000 36 0% 39 43.6% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GGPS1 9453 genome.wustl.edu 37 1 235505796 235505796 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001037277.1 +1 reviewed p.F204 1.000 134 0% 161 19.3% 2 50% - - - HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth NID1 4811 genome.wustl.edu 37 1 236189398 236189398 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002508.2 -1 reviewed p.P594 0.013 83 0% 56 28.6% 34 8.8% - - - HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like ACTN2 88 genome.wustl.edu 37 1 236902617 236902617 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001103.2 +1 reviewed p.R298C 1.000 92 0% 78 35.9% 0 - possibly_damaging(0.951) deleterious(0) deleterious(0.839) HMMPfam_Spectrin,superfamily_Spectrin repeat MTR 4548 genome.wustl.edu 37 1 237037109 237037109 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000254.2 +1 reviewed p.K814N 1.000 318 0% 328 26.2% 5 40% benign(0.108) deleterious(0.03) neutral(0.373) HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain RYR2 6262 genome.wustl.edu 37 1 237659842 237659842 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001035.2 +1 reviewed p.E665* 1.000 97 0% 80 28.7% 0 - - - - NULL CEP170 9859 genome.wustl.edu 37 1 243362459 243362459 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000336415 -1 known p.G80D 0.999 298 0% 300 16.3% 0 - - - - NULL C1orf150 148823 genome.wustl.edu 37 1 247729240 247729240 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145278.3 +1 provisional p.E49D 0.024 96 1% 127 14.2% 0 - benign(0.018) tolerated(0.14) neutral(0.250) NULL OR2M2 391194 genome.wustl.edu 37 1 248343467 248343467 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004688.1 +1 provisional p.Y60* 0.837 707 0% 576 11.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR2M3 127062 genome.wustl.edu 37 1 248366669 248366669 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004689.1 +1 provisional p.Q100H 0.295 601 0% 415 34% 0 - benign(0.078) deleterious(0.02) neutral(0.389) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR2M3 127062 genome.wustl.edu 37 1 248366960 248366960 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004689.1 +1 provisional p.K197N 0.000 453 0% 349 29.8% 0 - benign(0) tolerated(0.32) neutral(0.024) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR2T12 127064 genome.wustl.edu 37 1 248458026 248458026 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004692.1 -1 provisional p.P285 0.542 269 0% 224 17.4% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR2T27 403239 genome.wustl.edu 37 1 248813409 248813409 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001824.1 -1 provisional p.Y259 0.000 163 0% 115 22.6% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 TPO 7173 genome.wustl.edu 37 2 1497624 1497624 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000547.5 +1 reviewed p.A607T 0.001 49 0% 40 20% 0 - benign(0) tolerated(0.52) neutral(0.009) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases PXDN 7837 genome.wustl.edu 37 2 1680796 1680796 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012293.1 -1 validated p.E251K 1.000 72 0% 71 15.5% 3 0% benign(0.129) tolerated(0.18) neutral(0.067) HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like MYT1L 23040 genome.wustl.edu 37 2 1795762 1795762 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015025.2 -1 validated p.Q1144H 1.000 258 0% 291 12.7% 0 - probably_damaging(0.983) tolerated(0.06) deleterious(0.752) NULL KIDINS220 57498 genome.wustl.edu 37 2 8943200 8943200 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020738.2 -1 validated p.E221* 1.000 332 0.3% 368 17.4% 1 0% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat MBOAT2 129642 genome.wustl.edu 37 2 9098719 9098719 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138799.2 -1 validated p.R43Q 1.000 155 0% 127 13.4% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TAF1B 9014 genome.wustl.edu 37 2 10059911 10059911 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005680.2 +1 reviewed p.N509K 0.944 127 0% 112 25% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GRHL1 29841 genome.wustl.edu 37 2 10101455 10101455 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000324907 +1 known p.D187N 1.000 98 2% 73 26% 2 100% possibly_damaging(0.951) deleterious(0.03) deleterious(0.758) NULL RAD51AP2 729475 genome.wustl.edu 37 2 17697618 17697618 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099218.2 -1 provisional p.P689S 0.384 50 2% 57 24.6% 0 - benign(0.316) deleterious(0) deleterious(0.543) NULL RAD51AP2 729475 genome.wustl.edu 37 2 17698107 17698107 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099218.2 -1 provisional p.D526Y 0.073 50 0% 74 21.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL RAD51AP2 729475 genome.wustl.edu 37 2 17698778 17698778 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099218.2 -1 provisional p.R302K 1.000 402 0% 414 32.9% 0 - possibly_damaging(0.792) tolerated(0.94) neutral(0.297) NULL APOB 338 genome.wustl.edu 37 2 21230434 21230434 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000384.2 -1 reviewed p.F3102L 0.998 196 0% 188 18.6% 0 - probably_damaging(0.982) - - NULL ITSN2 50618 genome.wustl.edu 37 2 24509155 24509155 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006277.2 -1 reviewed p.E597* 1.000 280 0% 302 22.8% 0 - - - - NULL OTOF 9381 genome.wustl.edu 37 2 26684959 26684959 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_194248.2 -1 reviewed p.F1761 1.000 79 0% 52 28.8% 0 - - - - HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) C2orf70 339778 genome.wustl.edu 37 2 26802180 26802180 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000409392 +1 known p.E148* 0.018 132 0% 127 11% 9 0% - - - NULL NRBP1 29959 genome.wustl.edu 37 2 27663269 27663269 + Splice_Site SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013392.2 +1 validated e11-1 1.000 101 0% 111 23.4% 4 75% - - - - C2orf16 84226 genome.wustl.edu 37 2 27803796 27803796 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032266.3 +1 validated p.R1453* 0.003 74 0% 63 28.6% 1 0% - - - NULL FAM179A 165186 genome.wustl.edu 37 2 29245073 29245073 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_199280.2 +1 validated p.E470D 0.988 154 0% 156 35.3% 4 75% possibly_damaging(0.477) deleterious(0.05) deleterious(0.503) superfamily_ARM repeat YPEL5 51646 genome.wustl.edu 37 2 30381506 30381506 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127399.1 +1 validated p.E55K 1.000 181 0% 167 17.4% 84 21.4% benign(0.062) tolerated(0.35) neutral(0.025) HMMPfam_Yippee MEMO1 51072 genome.wustl.edu 37 2 32145881 32145881 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015955.2 -1 validated p.R104L 1.000 82 0% 100 15% 2 50% benign(0) tolerated(0.25) neutral(0.037) HMMPfam_Memo NLRC4 58484 genome.wustl.edu 37 2 32463350 32463350 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000360906 -1 known p.K791T 0.986 211 0% 217 21.2% 0 - probably_damaging(0.999) tolerated(0.3) deleterious(0.519) superfamily_RNI-like NLRC4 58484 genome.wustl.edu 37 2 32475303 32475303 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000360906 -1 known p.E544* 0.718 335 0% 291 30.9% 1 0% - - - NULL BIRC6 57448 genome.wustl.edu 37 2 32770803 32770803 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016252.3 +1 reviewed p.D4229G 1.000 403 0% 310 17.4% 56 37.5% benign(0.186) deleterious(0.01) neutral(0.423) NULL RASGRP3 25780 genome.wustl.edu 37 2 33745690 33745690 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001139488.1 +1 validated p.R103W 0.880 393 0% 336 29.8% 1 0% probably_damaging(0.98) tolerated(0.24) neutral(0.461) HMMSmart_SM00229,superfamily_Ras GEF FAM98A 25940 genome.wustl.edu 37 2 33812360 33812360 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015475.3 -1 validated p.P184S 1.000 122 0% 117 36.8% 0 - benign(0.002) tolerated(0.66) neutral(0.003) HMMPfam_DUF2465 CCDC75 253635 genome.wustl.edu 37 2 37319178 37319178 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_174931.2 +1 validated p.R146* 1.000 113 0% 167 27.5% 0 - - - - NULL GALM 130589 genome.wustl.edu 37 2 38903139 38903139 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138801.2 +1 reviewed p.G92 0.998 202 0% 147 15.6% 34 11.7% - - - HMMPfam_Aldose_epim,superfamily_Galactose mutarotase-like TMEM178 130733 genome.wustl.edu 37 2 39934244 39934244 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152390.2 +1 validated p.C190 0.795 141 0% 113 22.1% 45 15.5% - - - NULL SLC8A1 6546 genome.wustl.edu 37 2 40366566 40366566 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000359719 -1 known p.R247C 0.999 95 0% 78 35.9% 8 0% - - - HMMPfam_Na_Ca_ex THADA 63892 genome.wustl.edu 37 2 43793890 43793890 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001083953.1 -1 validated p.F753C 1.000 169 0% 163 15.3% 4 50% probably_damaging(0.997) tolerated(0.16) deleterious(0.526) superfamily_ARM repeat CAMKMT 79823 genome.wustl.edu 37 2 44993576 44993576 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024766.3 +1 validated p.A257V 1.000 207 0.5% 185 34.1% 6 33.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases PRKCE 5581 genome.wustl.edu 37 2 46372292 46372292 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005400.2 +1 reviewed p.F551 0.942 205 0% 167 26.9% 8 25% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ATP6V1E2 90423 genome.wustl.edu 37 2 46739833 46739833 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080653.3 -1 validated p.V6 0.002 92 0% 101 23.8% 0 - - - - NULL STON1 11037 genome.wustl.edu 37 2 48822376 48822376 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006873.2 +1 reviewed p.E715* 1.000 263 0% 239 31.4% 0 - - - - NULL C2orf73 129852 genome.wustl.edu 37 2 54562099 54562099 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001100396.1 +1 validated p.N58D 1.000 194 0% 182 15.4% 0 - probably_damaging(0.995) tolerated(0.14) deleterious(0.707) NULL EML6 400954 genome.wustl.edu 37 2 55195416 55195416 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039753.2 +1 validated p.F1917C 1.000 149 0% 118 21.2% 0 - probably_damaging(0.991) tolerated(0.17) deleterious(0.503) HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40 CCDC104 112942 genome.wustl.edu 37 2 55762977 55762977 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000403007 +1 known p.K205N 0.088 141 0% 192 12.5% 0 - unknown(0) - - NULL AFTPH 54812 genome.wustl.edu 37 2 64819028 64819028 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_203437.2 +1 validated p.P890 0.995 99 0% 103 12.6% 46 13% - - - NULL ETAA1 54465 genome.wustl.edu 37 2 67626758 67626758 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019002.3 +1 validated p.Q143H 1.000 119 0.8% 126 18.3% 2 0% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) NULL APLF 200558 genome.wustl.edu 37 2 68753219 68753219 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173545.2 +1 validated p.E217* 0.984 112 0% 138 20.3% 1 0% - - - NULL ANTXR1 84168 genome.wustl.edu 37 2 69397410 69397410 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032208.2 +1 reviewed p.E360K 0.978 189 0% 176 29% 32 43.7% possibly_damaging(0.936) tolerated(0.37) neutral(0.401) NULL GFPT1 2673 genome.wustl.edu 37 2 69575347 69575347 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002056.2 -1 reviewed p.R304Q 1.000 211 0.5% 193 22.3% 39 35.8% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL AAK1 22848 genome.wustl.edu 37 2 69769767 69769767 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014911.3 -1 reviewed p.R141H 1.000 142 0% 113 24.8% 2 100% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ANXA4 307 genome.wustl.edu 37 2 70043309 70043309 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001153.3 +1 reviewed p.R204Q 1.000 290 0% 221 31.7% 43 37.2% probably_damaging(1) tolerated(0.14) deleterious(0.750) superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX ZNF638 27332 genome.wustl.edu 37 2 71591334 71591334 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001014972.1 +1 reviewed p.R557* 0.972 156 0% 118 37.3% 4 0% - - - NULL EXOC6B 23233 genome.wustl.edu 37 2 72802678 72802678 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015189.1 -1 validated p.P263 0.998 491 0.2% 420 27.4% 0 - - - - NULL NAT8 9027 genome.wustl.edu 37 2 73868634 73868634 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003960.3 -1 reviewed p.R41Q 0.006 80 0% 73 28.8% 0 - benign(0.01) tolerated(0.33) neutral(0.025) superfamily_Acyl_CoA_acyltransferase C2orf78 388960 genome.wustl.edu 37 2 74043300 74043300 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080474.1 +1 predicted p.F650L 0.587 52 0% 65 24.6% 0 - benign(0) tolerated(0.49) neutral(0.011) NULL TET3 200424 genome.wustl.edu 37 2 74273580 74273580 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144993.1 +1 provisional p.K44T 1.000 31 0% 27 22.2% 0 - possibly_damaging(0.918) deleterious(0.01) deleterious(0.774) NULL MTHFD2 10797 genome.wustl.edu 37 2 74435765 74435765 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006636.3 +1 reviewed p.I160S 0.996 539 0.2% 493 31.6% 24 4.1% benign(0.001) tolerated(0.12) neutral(0.261) HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-bd,superfamily_SSF53223 LRRTM4 80059 genome.wustl.edu 37 2 77745564 77745564 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134745.1 -1 validated p.M477I 1.000 181 0% 166 18.7% 0 - benign(0) deleterious(0.05) neutral(0.345) NULL CTNNA2 1496 genome.wustl.edu 37 2 80874766 80874766 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004389.3 +1 validated p.V829 0.991 160 0% 133 28.6% 18 55.5% - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin DNAH6 1768 genome.wustl.edu 37 2 84881796 84881796 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001370.1 +1 validated p.R1883W 0.031 379 0% 295 20% 4 25% probably_damaging(0.989) deleterious(0.03) deleterious(0.804) HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases LOC100132330 100132330 genome.wustl.edu 37 2 89117790 89117790 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001719152.1 -1 model p.L69I 0.993 40 0% 44 13.6% 0 - - - - HMMPfam_MARVEL IGKV6D-41 28869 genome.wustl.edu 37 2 90109079 90109079 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390271 +1 known p.P115L 0.041 122 0% 104 20.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF48726 LOC400986 400986 genome.wustl.edu 37 2 96555590 96555590 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001717763.2 -1 model p.P623 0.000 386 0% 330 32.7% 1 0% - - - NULL LOC400986 400986 genome.wustl.edu 37 2 96587379 96587379 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001717763.2 -1 model p.K426Q 0.010 251 0% 250 17.6% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL NCAPH 23397 genome.wustl.edu 37 2 97033035 97033035 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015341.3 +1 reviewed p.K641T 1.000 78 0% 97 10.3% 8 12.5% probably_damaging(0.955) deleterious(0.01) deleterious(0.804) HMMPfam_Barren ANKRD36 375248 genome.wustl.edu 37 2 97856888 97856888 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000461153 +1 known p.E739* 0.003 263 0% 339 26% 0 - - - - NULL NMS 129521 genome.wustl.edu 37 2 101095876 101095876 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001011717.1 +1 provisional p.R108I 0.008 119 0% 106 22.6% 0 - possibly_damaging(0.501) deleterious(0.04) deleterious(0.516) NULL PDCL3 79031 genome.wustl.edu 37 2 101188051 101188051 + Splice_Site SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024065.4 +1 validated e5-1 1.000 350 0.3% 362 19.3% 0 - - - - - NPAS2 4862 genome.wustl.edu 37 2 101549440 101549440 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002518.3 +1 reviewed p.E84* 1.000 162 0% 149 14.8% 7 0% - - - HMMSmart_PAS,HMMPfam_PAS IL1R1 3554 genome.wustl.edu 37 2 102793090 102793090 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000877.2 +1 reviewed p.K527N 0.987 105 0% 91 25.3% 22 40.9% benign(0.013) tolerated(0.56) neutral(0.007) HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain SLC9A4 389015 genome.wustl.edu 37 2 103130618 103130618 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001011552.3 +1 validated p.I543M 0.962 255 0% 209 17.2% 0 - possibly_damaging(0.92) deleterious(0) deleterious(0.816) NULL RGPD3 653489 genome.wustl.edu 37 2 107075738 107075738 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001144013.1 -1 validated p.E41D 1.000 281 0% 281 6.8% 0 - possibly_damaging(0.948) deleterious(0) deleterious(0.836) superfamily_SSF48452 SULT1C4 27233 genome.wustl.edu 37 2 109002692 109002692 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006588.2 +1 reviewed p.K220 0.110 88 0% 102 18.6% 0 - - - - HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases GCC2 9648 genome.wustl.edu 37 2 109068866 109068866 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181453.3 +1 reviewed p.E54* 1.000 250 0% 280 16.1% 0 - - - - NULL BCL2L11 10018 genome.wustl.edu 37 2 111886262 111886262 + Silent SNP C C T rs182430759 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207002.2 +1 reviewed p.G91 0.002 426 0% 370 19.5% 0 - - - - NULL MERTK 10461 genome.wustl.edu 37 2 112740461 112740461 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006343.2 +1 reviewed p.E396A 0.017 320 0% 273 34.4% 5 80% benign(0.228) tolerated(0.19) neutral(0.072) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like MERTK 10461 genome.wustl.edu 37 2 112758829 112758829 + Missense_Mutation SNP G G T rs67199299 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006343.2 +1 reviewed p.K552N 1.000 239 0% 238 10.5% 0 - probably_damaging(0.992) deleterious(0.02) deleterious(0.831) NULL CLASP1 23332 genome.wustl.edu 37 2 122260772 122260772 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015282.2 -1 validated p.K228T 1.000 252 0% 238 21.8% 0 - possibly_damaging(0.793) tolerated(0.2) neutral(0.347) superfamily_ARM repeat WDR33 55339 genome.wustl.edu 37 2 128479461 128479461 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018383.3 -1 reviewed p.E540D 1.000 693 0% 699 20% 4 50% unknown(0) tolerated(0.07) - superfamily_WD40_like SAP130 79595 genome.wustl.edu 37 2 128735653 128735653 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000259234 -1 known p.R656W 1.000 115 0% 88 20.5% 30 13.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RAB6C 84084 genome.wustl.edu 37 2 130737824 130737824 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032144.2 +1 validated p.I46L 0.999 400 0% 326 10.7% 0 - benign(0.262) deleterious(0) deleterious(0.472) HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 TUBA3E 112714 genome.wustl.edu 37 2 130951947 130951947 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207312.2 -1 validated p.R156 0.998 209 0% 140 25.7% 4 0% - - - HMMPfam_Tubulin,superfamily_Tubulin_FtsZ CCDC115 84317 genome.wustl.edu 37 2 131098508 131098508 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032357.2 -1 provisional p.R135C 0.985 86 0% 70 31.4% 14 21.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PTPN18 26469 genome.wustl.edu 37 2 131127394 131127394 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014369.3 +1 reviewed p.F180L 1.000 284 0% 200 10% 64 18.7% probably_damaging(0.997) tolerated(0.25) deleterious(0.503) HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799 LOC150786 150786 genome.wustl.edu 37 2 132120918 132120918 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001077637.1 -1 validated p.N126H 1.000 670 0% 514 19.1% 0 - - - - HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540 GPR39 2863 genome.wustl.edu 37 2 133174961 133174961 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001508.2 +1 validated p.E116K 1.000 148 0% 102 17.6% 37 32.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CCNT2 905 genome.wustl.edu 37 2 135677452 135677452 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_058241.1 +1 reviewed p.F77L 1.000 478 0% 405 17% 1 100% probably_damaging(0.955) deleterious(0.01) deleterious(0.804) HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like RAB3GAP1 22930 genome.wustl.edu 37 2 135872873 135872873 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012233.2 +1 reviewed p.F190 0.997 151 0% 200 12% 19 5.2% - - - NULL R3HDM1 23518 genome.wustl.edu 37 2 136473239 136473239 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015361.2 +1 provisional p.F917L 1.000 378 0% 269 26.8% 50 48% probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL LOC440917 440917 genome.wustl.edu 37 2 139045690 139045690 + RNA SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_041289.2 -1 model NULL 0.997 325 0% 298 13.4% 0 - - - - - GTDC1 79712 genome.wustl.edu 37 2 144966241 144966241 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001006636.3 -1 validated p.K36N 1.000 192 0% 199 21.1% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ZEB2 9839 genome.wustl.edu 37 2 145158815 145158815 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000419938 -1 known p.R178K 1.000 279 0% 231 12.6% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers EPC2 26122 genome.wustl.edu 37 2 149447847 149447847 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015630.3 +1 validated p.V73G 1.000 325 0.3% 269 30.5% 8 37.5% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) HMMPfam_EPL1 EPC2 26122 genome.wustl.edu 37 2 149520360 149520360 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015630.3 +1 validated p.C313R 1.000 199 0% 199 17.6% 0 - possibly_damaging(0.556) tolerated(0.4) neutral(0.206) NULL KIF5C 3800 genome.wustl.edu 37 2 149793838 149793838 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000435030 +1 known p.R111Q 1.000 94 0% 85 23.5% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases KIF5C 3800 genome.wustl.edu 37 2 149847535 149847535 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000435030 +1 known p.V576 1.000 72 0% 46 37% 0 - - - - NULL RIF1 55183 genome.wustl.edu 37 2 152317694 152317694 + Missense_Mutation SNP C C A rs150890694 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018151.4 +1 reviewed p.L1040I 0.925 106 0% 103 28.2% 0 - benign(0.007) deleterious(0.04) neutral(0.349) superfamily_ARM repeat PRPF40A 55660 genome.wustl.edu 37 2 153532998 153532998 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017892.3 -1 validated p.T318A 1.000 217 0% 167 12% 30 50% benign(0.079) tolerated(0.46) neutral(0.018) NULL GALNT13 114805 genome.wustl.edu 37 2 155295239 155295239 + Splice_Site SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052917.2 +1 validated e10+1 1.000 243 0% 245 30.2% 0 - - - - - ERMN 57471 genome.wustl.edu 37 2 158178025 158178025 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001009959.1 -1 validated p.E218* 1.000 198 0% 189 37% 2 0% - - - NULL CYTIP 9595 genome.wustl.edu 37 2 158287392 158287392 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004288.4 -1 reviewed p.H121R 0.996 116 0% 99 14.1% 10 0% possibly_damaging(0.926) tolerated(0.15) deleterious(0.615) HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ TANC1 85461 genome.wustl.edu 37 2 160082257 160082257 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033394.2 +1 validated p.Q1290H 1.000 319 0% 216 16.7% 3 33.3% benign(0.382) tolerated(0.08) neutral(0.422) HMMSmart_SM00028 SLC4A10 57282 genome.wustl.edu 37 2 162735688 162735688 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022058.3 +1 reviewed p.S302 0.922 204 0% 183 25.1% 0 - - - - HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein SLC4A10 57282 genome.wustl.edu 37 2 162820723 162820723 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022058.3 +1 reviewed p.R951* 1.000 224 0.4% 225 12.9% 0 - - - - HMMPfam_HCO3_cotransp SCN3A 6328 genome.wustl.edu 37 2 165986676 165986676 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006922.3 -1 reviewed p.V899A 1.000 281 0% 248 17.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_SSF81324 SCN2A 6326 genome.wustl.edu 37 2 166164373 166164373 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040142.1 +1 reviewed p.L134 1.000 333 0% 269 26.4% 0 - - - - superfamily_Voltage-gated potassium channels SCN7A 6332 genome.wustl.edu 37 2 167277771 167277771 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002976.2 -1 validated p.E1022* 0.994 117 0% 175 30.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels XIRP2 129446 genome.wustl.edu 37 2 168105294 168105294 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152381.4 +1 validated p.K2464N 0.018 124 0% 94 30.9% 0 - possibly_damaging(0.566) deleterious(0) deleterious(0.638) NULL LRP2 4036 genome.wustl.edu 37 2 170062108 170062108 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004525.2 -1 reviewed p.I2532 0.856 69 0% 79 21.5% 4 75% - - - HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 PPIG 9360 genome.wustl.edu 37 2 170492609 170492609 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004792.2 +1 validated p.R342Q 1.000 159 0% 140 23.6% 17 35.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL SLC25A12 8604 genome.wustl.edu 37 2 172669865 172669865 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003705.3 -1 reviewed p.F385L 1.000 133 0% 153 15.7% 0 - benign(0.047) tolerated(0.23) neutral(0.045) superfamily_Mitoch_carrier,HMMPfam_Mito_carr RAPGEF4 11069 genome.wustl.edu 37 2 173850190 173850190 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007023.3 +1 validated p.I373M 0.974 314 0% 304 11.2% 1 0% benign(0.285) tolerated(0.14) neutral(0.337) HMMSmart_SM00100,superfamily_cAMP-binding domain-like LOC643997 643997 genome.wustl.edu 37 2 174350985 174350985 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_292963.7 -1 model p.F36V 1.000 20 0% 26 42.3% 0 - - - - HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like SCRN3 79634 genome.wustl.edu 37 2 175287648 175287648 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024583.3 +1 validated p.R264* 1.000 195 0% 185 29.2% 0 - - - - NULL TTC30B 150737 genome.wustl.edu 37 2 178416698 178416698 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152517.2 -1 validated p.R265K 0.963 112 0% 89 29.2% 5 40% benign(0) tolerated(1) - superfamily_TPR-like TTN 7273 genome.wustl.edu 37 2 179393279 179393279 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133378.4 -1 reviewed p.S33165L 0.648 108 0% 90 35.6% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179399891 179399891 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.E31247D 0.998 153 0% 135 24.4% 0 - benign(0.001) - - NULL TTN 7273 genome.wustl.edu 37 2 179402629 179402629 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133378.4 -1 reviewed p.E30534* 1.000 100 0% 78 43.6% 0 - probably_damaging(0.983) - - NULL TTN 7273 genome.wustl.edu 37 2 179426604 179426604 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133378.4 -1 reviewed p.A25517V 1.000 95 0% 76 35.5% 0 - - - - NULL TTN 7273 genome.wustl.edu 37 2 179431565 179431565 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.R23862* 0.979 36 0% 29 17.2% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179433610 179433610 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.R23180Q 0.993 157 0% 145 33.8% 0 - benign(0.423) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179438298 179438298 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133378.4 -1 reviewed p.S21619Y 0.267 204 0% 207 39.6% 1 0% - - - NULL TTN 7273 genome.wustl.edu 37 2 179442499 179442499 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133378.4 -1 reviewed p.R20317* 0.258 262 0% 252 23.8% 0 - benign(0.027) - - NULL TTN 7273 genome.wustl.edu 37 2 179454216 179454216 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.K18176Q 0.998 168 0% 157 14.6% 0 - benign(0.29) - - HMMPfam_fn3,HMMSmart_SM00060 TTN 7273 genome.wustl.edu 37 2 179565880 179565880 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.E8973K 1.000 523 0% 459 21.4% 0 - unknown(0) deleterious(0.02) - NULL TTN 7273 genome.wustl.edu 37 2 179585804 179585804 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.E6404K 1.000 190 0% 152 25% 0 - unknown(0) - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179592993 179592993 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.E5276* 1.000 129 0.8% 123 27.6% 0 - - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179595359 179595359 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.F4723L 1.000 211 0% 149 24.2% 0 - unknown(0) - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179599205 179599205 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000356127 -1 known p.R3872* 1.000 99 0% 94 31.9% 0 - - - - HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set TTN 7273 genome.wustl.edu 37 2 179615150 179615150 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133379.3 -1 reviewed p.H3993N 0.097 241 0% 196 19.9% 0 - benign(0.29) tolerated(0.54) neutral(0.097) HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726 CCDC141 285025 genome.wustl.edu 37 2 179742696 179742696 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173648.2 -1 provisional p.N57H 0.993 198 0% 189 27% 0 - possibly_damaging(0.882) deleterious(0.04) deleterious(0.694) NULL ZNF385B 151126 genome.wustl.edu 37 2 180409606 180409606 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152520.4 -1 validated p.S115Y 1.000 194 0% 142 25.4% 0 - possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) NULL ITGA4 3676 genome.wustl.edu 37 2 182360536 182360536 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000885.4 +1 reviewed p.A471V 1.000 250 0% 190 12.6% 4 0% benign(0.001) tolerated(0.76) neutral(0.001) HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains CERKL 375298 genome.wustl.edu 37 2 182423343 182423343 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001030311.2 -1 reviewed p.R283Q 0.000 168 0% 139 17.3% 14 14.2% benign(0.312) tolerated(0.34) neutral(0.120) HMMPfam_DAGK_cat NEUROD1 4760 genome.wustl.edu 37 2 182543494 182543494 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002500.2 -1 reviewed p.E32K 1.000 251 0% 160 20.6% 0 - benign(0.028) tolerated(0.18) neutral(0.058) NULL PDE1A 5136 genome.wustl.edu 37 2 183050537 183050537 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000456212 -1 known p.F549C 0.000 122 0% 118 28.8% 0 - unknown(0) - - NULL ZSWIM2 151112 genome.wustl.edu 37 2 187692719 187692719 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182521.2 -1 validated p.Q632* 0.998 67 0% 87 19.5% 0 - - - - NULL CALCRL 10203 genome.wustl.edu 37 2 188243720 188243720 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005795.4 -1 validated p.H149 1.000 247 0% 241 27.8% 4 25% - - - HMMPfam_7tm_2,superfamily_SSF111418 COL3A1 1281 genome.wustl.edu 37 2 189851792 189851792 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000090.3 +1 reviewed p.S152Y 1.000 212 0% 196 22.4% 57 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL COL3A1 1281 genome.wustl.edu 37 2 189872637 189872637 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000090.3 +1 reviewed p.I1130 0.001 55 0% 39 17.9% 226 0.4% - - - HMMPfam_Collagen ANKAR 150709 genome.wustl.edu 37 2 190541302 190541302 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000431575 +1 known p.R29I 1.000 84 0% 87 33.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MSTN 2660 genome.wustl.edu 37 2 190922264 190922264 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005259.2 -1 reviewed p.R283H 1.000 128 0.8% 112 45.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines STAT1 6772 genome.wustl.edu 37 2 191844575 191844575 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007315.3 -1 reviewed p.K550N 1.000 143 0% 203 22.2% 19 47.3% probably_damaging(1) deleterious(0.03) deleterious(0.865) superfamily_p53-like transcription factors,HMMPfam_STAT_bind SLC39A10 57181 genome.wustl.edu 37 2 196581642 196581642 + Missense_Mutation SNP G G T rs186318919 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127257.1 +1 validated p.D660Y 1.000 193 0% 155 15.5% 24 33.3% probably_damaging(0.989) deleterious(0.02) deleterious(0.823) HMMPfam_Zip STK17B 9262 genome.wustl.edu 37 2 197002222 197002222 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004226.3 -1 validated p.F356 0.991 244 0% 214 19.2% 5 0% - - - NULL SF3B1 23451 genome.wustl.edu 37 2 198265007 198265007 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012433.2 -1 reviewed p.R957Q 1.000 192 0% 190 18.4% 91 20.8% probably_damaging(0.997) tolerated(0.09) deleterious(0.762) HMMPfam_HEAT,superfamily_ARM repeat RFTN2 130132 genome.wustl.edu 37 2 198480650 198480650 + Splice_Site SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000414909 -1 known e3-1 0.996 191 0% 145 20.7% 1 0% - - - - SGOL2 151246 genome.wustl.edu 37 2 201437527 201437527 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152524.5 +1 validated p.P820T 0.224 114 0% 103 11.7% 0 - benign(0.003) tolerated(0.35) neutral(0.021) NULL CASP8 841 genome.wustl.edu 37 2 202131261 202131261 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080125.1 +1 reviewed p.D77Y 0.312 133 0% 92 20.7% 5 0% possibly_damaging(0.861) deleterious(0) deleterious(0.778) HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain ALS2CR12 130540 genome.wustl.edu 37 2 202172323 202172323 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000415745 -1 known p.S41L 1.000 267 0% 260 15.8% 0 - - - - NULL ALS2CR11 151254 genome.wustl.edu 37 2 202352430 202352430 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152525.5 -1 validated p.R593* 0.947 359 0% 412 21.8% 0 - - - - NULL ALS2CR11 151254 genome.wustl.edu 37 2 202356661 202356661 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000439140 -1 known p.E1468A 0.983 400 0% 394 11.4% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL ALS2CR11 151254 genome.wustl.edu 37 2 202358588 202358588 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000439140 -1 known p.E826K 0.000 67 0% 83 22.9% 0 - possibly_damaging(0.535) - - NULL PARD3B 117583 genome.wustl.edu 37 2 205986592 205986592 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152526.4 +1 validated p.P362S 0.999 195 0% 135 33.3% 0 - benign(0.059) tolerated(0.66) neutral(0.007) superfamily_PDZ ZDBF2 57683 genome.wustl.edu 37 2 207170663 207170663 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020923.1 +1 validated p.E471* 0.459 81 0% 76 31.6% 0 - - - - NULL ZDBF2 57683 genome.wustl.edu 37 2 207175414 207175414 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020923.1 +1 validated p.E2054 0.993 46 0% 42 38.1% 0 - - - - NULL ADAM23 8745 genome.wustl.edu 37 2 207310144 207310144 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003812.2 +1 reviewed p.E110* 1.000 152 0% 115 19.1% 0 - - - - HMMPfam_Pep_M12B_propep DYTN 391475 genome.wustl.edu 37 2 207564524 207564524 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001093730.1 -1 provisional p.L216 0.005 196 0% 201 18.4% 0 - - - - HMMPfam_efhand_2,superfamily_SSF47473 PIKFYVE 200576 genome.wustl.edu 37 2 209190495 209190495 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015040.3 +1 reviewed p.Q987R 0.073 73 0% 86 40.7% 0 - possibly_damaging(0.7) tolerated(0.06) deleterious(0.574) NULL MAP2 4133 genome.wustl.edu 37 2 210557456 210557456 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002374.3 +1 reviewed p.P188S 1.000 56 0% 81 18.5% 0 - possibly_damaging(0.952) tolerated(0.07) deleterious(0.715) NULL UNC80 285175 genome.wustl.edu 37 2 210642075 210642075 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032504.1 +1 validated p.R131Q 0.664 58 0% 50 10% 0 - possibly_damaging(0.813) tolerated(0.63) neutral(0.310) NULL ATIC 471 genome.wustl.edu 37 2 216203539 216203539 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004044.6 +1 reviewed p.R379Q 1.000 181 0% 126 19% 26 34.6% probably_damaging(0.976) deleterious(0) deleterious(0.863) HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly FN1 2335 genome.wustl.edu 37 2 216262506 216262506 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_212482.1 -1 reviewed p.I1138 0.385 207 0% 185 20.5% 64 7.8% - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III USP37 57695 genome.wustl.edu 37 2 219353050 219353050 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020935.2 -1 validated p.D523Y 1.000 225 0% 245 30.2% 1 0% benign(0.37) deleterious(0.02) deleterious(0.500) HMMPfam_UCH,superfamily_Cysteine proteinases ASIC4 55515 genome.wustl.edu 37 2 220402745 220402745 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018674.4 +1 reviewed p.L660I 1.000 71 0% 54 25.9% 0 - possibly_damaging(0.568) tolerated(0.22) neutral(0.237) NULL SCG2 7857 genome.wustl.edu 37 2 224463184 224463184 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003469.3 -1 reviewed p.E273* 0.209 311 0% 301 18.3% 0 - - - - HMMPfam_Granin AP1S3 130340 genome.wustl.edu 37 2 224623458 224623458 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039569.1 -1 validated p.E147K 1.000 278 0.4% 268 16.8% 1 0% benign(0) tolerated(0.06) neutral(0.323) NULL DOCK10 55619 genome.wustl.edu 37 2 225796376 225796376 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014689.2 -1 validated p.P45S 1.000 174 0% 156 16.7% 2 0% possibly_damaging(0.948) tolerated(0.09) deleterious(0.688) NULL COL4A4 1286 genome.wustl.edu 37 2 227924334 227924334 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000092.4 -1 reviewed p.R724S 0.483 53 0% 60 16.7% 0 - possibly_damaging(0.951) tolerated(0.1) deleterious(0.680) NULL WDR69 164781 genome.wustl.edu 37 2 228786257 228786257 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178821.1 +1 provisional p.K398T 0.917 114 0% 95 20% 0 - benign(0.001) tolerated(0.4) neutral(0.016) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 SPHKAP 80309 genome.wustl.edu 37 2 228884419 228884419 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142644.1 -1 validated p.G384V 0.993 246 0.4% 258 30.6% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL SP140 11262 genome.wustl.edu 37 2 231112673 231112673 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007237.4 +1 validated p.S262N 0.000 421 0.5% 346 19.1% 3 0% possibly_damaging(0.767) deleterious(0.05) deleterious(0.630) NULL CAB39 51719 genome.wustl.edu 37 2 231663533 231663533 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001130849.1 +1 validated p.S163L 1.000 164 0% 197 15.7% 6 0% probably_damaging(0.997) deleterious(0.04) deleterious(0.815) HMMPfam_Mo25,superfamily_ARM repeat B3GNT7 93010 genome.wustl.edu 37 2 232263162 232263162 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145236.2 +1 validated p.F244 0.993 67 0% 49 14.3% 17 0% - - - HMMPfam_Galactosyl_T LOC729898 729898 genome.wustl.edu 37 2 232298714 232298714 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001134101.1 -1 model p.R124I 1.000 235 0% 239 13% 0 - - - - HMMPfam_DUF101 SAG 6295 genome.wustl.edu 37 2 234247328 234247328 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000541.4 +1 reviewed p.K317 0.995 227 0% 201 23.4% 0 - - - - HMMPfam_Arrestin_C,superfamily_Ig_E-set UGT1A8 54576 genome.wustl.edu 37 2 234526493 234526493 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019076.4 +1 reviewed p.K47T 0.988 132 0% 87 27.6% 0 - benign(0.064) deleterious(0.01) neutral(0.410) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase TRPM8 79054 genome.wustl.edu 37 2 234847739 234847739 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024080.4 +1 validated p.T149I 1.000 28 0% 21 23.8% 0 - probably_damaging(1) tolerated(0.24) deleterious(0.537) NULL IQCA1 79781 genome.wustl.edu 37 2 237396653 237396653 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024726.3 -1 provisional p.R213H 0.001 148 0% 133 21.1% 1 0% possibly_damaging(0.911) tolerated(0.22) neutral(0.405) NULL CXCR7 57007 genome.wustl.edu 37 2 237489774 237489774 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020311.2 +1 reviewed p.A222 0.000 45 0% 33 36.4% 203 37.9% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like COL6A3 1293 genome.wustl.edu 37 2 238242190 238242190 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004369.3 -1 reviewed p.K3077N 0.825 168 0% 152 32.9% 26 0% unknown(0) - - NULL COL6A3 1293 genome.wustl.edu 37 2 238275493 238275493 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004369.3 -1 reviewed p.R1779 0.979 111 0% 83 33.7% 32 0% - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like UBE2F 140739 genome.wustl.edu 37 2 238925174 238925174 + Splice_Site SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000448502 +1 known e4-1 0.995 78 0% 99 32.3% 0 - - - - - FLJ45964 401040 genome.wustl.edu 37 2 240500088 240500088 + RNA SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_041563.1 +1 model NULL 0.279 54 0% 40 20% 0 - - - - - KIF1A 547 genome.wustl.edu 37 2 241697851 241697851 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004321.4 -1 reviewed p.I827 0.057 74 0% 50 12% 45 11.1% - - - NULL PPP1R7 5510 genome.wustl.edu 37 2 242099761 242099761 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002712.1 +1 provisional p.S150Y 1.000 103 0% 107 22.4% 8 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like CNTN4 152330 genome.wustl.edu 37 3 3084090 3084090 + Missense_Mutation SNP G G A rs183942017 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175607.1 +1 reviewed p.R832Q 1.000 255 0.4% 207 22.2% 0 - probably_damaging(0.999) tolerated(0.3) deleterious(0.519) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III LRRN1 57633 genome.wustl.edu 37 3 3887187 3887187 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020873.5 +1 validated p.R288W 0.223 88 0% 96 28.1% 1 100% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) superfamily_SSF52058 SETMAR 6419 genome.wustl.edu 37 3 4358243 4358243 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006515.3 +1 validated p.L456 0.983 24 0% 21 28.6% 7 28.5% - - - NULL GRM7 2917 genome.wustl.edu 37 3 7503406 7503406 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181874.2 +1 reviewed p.L504 0.989 118 0.8% 91 11% 3 0% - - - superfamily_SSF53822 CPNE9 151835 genome.wustl.edu 37 3 9759824 9759824 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153635.2 +1 validated p.K348T 1.000 67 0% 58 12.1% 1 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300 CAMK1 8536 genome.wustl.edu 37 3 9809366 9809366 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003656.3 -1 reviewed p.R23Q 0.936 113 0% 96 27.1% 5 40% possibly_damaging(0.782) tolerated(0.26) neutral(0.327) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase C3orf24 115795 genome.wustl.edu 37 3 10146326 10146326 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173472.1 -1 validated p.D45N 1.000 482 0% 362 28.2% 0 - benign(0.145) deleterious(0) neutral(0.457) NULL ATP2B2 491 genome.wustl.edu 37 3 10420042 10420042 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001331.2 -1 reviewed p.A365 0.891 35 0% 19 26.3% 1 0% - - - HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M SLC6A11 6538 genome.wustl.edu 37 3 10974899 10974899 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014229.1 +1 provisional p.F478 0.989 243 0% 181 19.9% 0 - - - - HMMPfam_SNF SLC6A1 6529 genome.wustl.edu 37 3 11075338 11075338 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003042.3 +1 validated p.F480L 1.000 159 0% 120 36.7% 0 - benign(0.004) tolerated(0.13) neutral(0.253) HMMPfam_SNF CAND2 23066 genome.wustl.edu 37 3 12858166 12858166 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012298.2 +1 validated p.R486C 1.000 19 0.000 9 0.444 2 50% probably_damaging(0.988) deleterious(0) deleterious(0.882) superfamily_ARM-type_fold FGD5 152273 genome.wustl.edu 37 3 14862129 14862129 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152536.3 +1 validated p.E517D 0.000 33 0% 27 22.2% 6 50% benign(0.001) tolerated(1) - NULL GALNTL2 117248 genome.wustl.edu 37 3 16216853 16216853 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_054110.4 +1 validated p.Q65H 1.000 129 0% 104 36.5% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) NULL OXNAD1 92106 genome.wustl.edu 37 3 16344944 16344944 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138381.2 +1 validated p.D272Y 0.016 200 0% 156 23.1% 1 0% possibly_damaging(0.609) deleterious(0.04) deleterious(0.560) HMMPfam_NAD_binding_1,superfamily_SSF52343 RAB5A 5868 genome.wustl.edu 37 3 20017656 20017656 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004162.4 +1 validated p.F145V 1.000 146 0% 112 23.2% 11 36.3% benign(0.049) tolerated(0.54) neutral(0.010) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases NKIRAS1 28512 genome.wustl.edu 37 3 23934596 23934596 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020345.3 -1 validated p.S190F 0.011 186 0% 163 25.8% 0 - benign(0.135) deleterious(0.05) neutral(0.357) NULL NEK10 152110 genome.wustl.edu 37 3 27215980 27215980 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000396636 -1 known p.S909L 0.955 173 0% 171 31.6% 1 0% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL SLC4A7 9497 genome.wustl.edu 37 3 27444713 27444713 + Silent SNP G G A rs144859662 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003615.3 -1 validated p.Y737 0.721 81 0% 81 38.3% 1 100% - - - HMMPfam_HCO3_cotransp SLC4A7 9497 genome.wustl.edu 37 3 27460084 27460084 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003615.3 -1 validated p.D509Y 1.000 172 0% 183 12.6% 1 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein ZNF860 344787 genome.wustl.edu 37 3 32031158 32031158 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001137674.1 +1 provisional p.S196Y 0.952 134 0% 150 36% 0 - probably_damaging(0.961) tolerated(1) neutral(0.404) NULL ZNF860 344787 genome.wustl.edu 37 3 32032244 32032244 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001137674.1 +1 provisional p.R558I 0.969 163 0% 144 16.7% 1 0% possibly_damaging(0.884) tolerated(0.16) neutral(0.404) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ARPP21 10777 genome.wustl.edu 37 3 35723339 35723339 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016300.4 +1 validated p.E32D 0.928 157 0% 158 36.7% 0 - benign(0.019) tolerated(0.05) neutral(0.346) NULL ARPP21 10777 genome.wustl.edu 37 3 35778739 35778739 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016300.4 +1 validated p.R510Q 0.977 45 0% 43 37.2% 0 - probably_damaging(1) tolerated(0.16) deleterious(0.559) NULL MIR128-2 406916 genome.wustl.edu 37 3 35786003 35786003 + RNA SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000384893 +1 known NULL 1.000 78 0% 57 12.3% 0 - - - - - MLH1 4292 genome.wustl.edu 37 3 37055924 37055924 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000249.3 +1 reviewed p.E227* 1.000 111 0.9% 129 11.6% 11 0% - - - HMMPfam_DNA_mis_repair,superfamily_Ribosomal_S5_D2-typ_fold SCN5A 6331 genome.wustl.edu 37 3 38595795 38595795 + Silent SNP G G A rs141789366 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099404.1 -1 reviewed p.F1596 0.997 188 0% 134 29.9% 6 50% - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels SCN11A 11280 genome.wustl.edu 37 3 38961476 38961476 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014139.2 -1 validated p.K303N 0.818 250 0% 275 34.5% 0 - possibly_damaging(0.903) tolerated(0.56) neutral(0.364) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels TTC21A 199223 genome.wustl.edu 37 3 39170604 39170604 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001105513.2 +1 validated p.F654 0.999 78 0% 52 13.5% 34 32.3% - - - superfamily_TPR-like ENTPD3 956 genome.wustl.edu 37 3 40468797 40468797 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001248.2 +1 validated p.Y463C 1.000 87 0% 78 17.9% 21 23.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GDA1_CD39 CCBP2 1238 genome.wustl.edu 37 3 42906582 42906582 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001296.4 +1 reviewed p.H196 0.000 64 0% 64 18.8% 6 16.6% - - - HMMPfam_7tm_1,superfamily_SSF81321 C3orf77 375337 genome.wustl.edu 37 3 44284775 44284775 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145030.1 +1 validated p.F259L 0.067 124 0% 96 26% 0 - benign(0) tolerated(0.56) neutral(0.006) NULL C3orf77 375337 genome.wustl.edu 37 3 44285556 44285556 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145030.1 +1 validated p.R520C 0.216 155 0% 185 31.4% 0 - benign(0.003) tolerated(0.07) neutral(0.319) NULL C3orf77 375337 genome.wustl.edu 37 3 44312244 44312244 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145030.1 +1 validated p.R1105H 0.989 169 0% 183 36.6% 0 - probably_damaging(0.995) tolerated(0.08) deleterious(0.758) NULL ZNF502 91392 genome.wustl.edu 37 3 44762971 44762971 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134440.1 +1 validated p.R221Q 0.000 108 0% 103 27.2% 1 100% benign(0.001) tolerated(0.59) neutral(0.004) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 TMEM42 131616 genome.wustl.edu 37 3 44905741 44905741 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144638.1 +1 provisional p.S82Y 0.712 501 0% 339 22.1% 8 37.5% probably_damaging(0.995) deleterious(0.03) deleterious(0.822) NULL LARS2 23395 genome.wustl.edu 37 3 45527276 45527276 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015340.3 +1 reviewed p.D371N 1.000 179 0% 159 32.7% 5 80% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_ValRS_IleRS_edit,superfamily_SSF52374 CCR2 729230 genome.wustl.edu 37 3 46399384 46399384 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001123041.2 +1 validated p.I122 0.000 407 0% 435 18.4% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like NBEAL2 23218 genome.wustl.edu 37 3 47039982 47039982 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015175.1 +1 validated p.R1050W 0.402 65 0% 59 25.4% 46 32.6% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL SCAP 22937 genome.wustl.edu 37 3 47456366 47456366 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012235.2 -1 reviewed p.K1086T 1.000 46 0% 37 21.6% 106 44.3% possibly_damaging(0.809) tolerated(0.19) neutral(0.354) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 MAP4 4134 genome.wustl.edu 37 3 47957505 47957505 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002375.4 -1 reviewed p.D604E 0.557 218 0% 213 36.2% 33 42.4% unknown(0) tolerated(0.14) - NULL CDC25A 993 genome.wustl.edu 37 3 48205814 48205814 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001789.2 -1 reviewed p.S435 0.616 128 0% 96 33.3% 4 75% - - - HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase CELSR3 1951 genome.wustl.edu 37 3 48698283 48698283 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001407.2 -1 reviewed p.I595 0.863 40 0% 32 21.9% 1 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like LAMB2 3913 genome.wustl.edu 37 3 49169730 49169730 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002292.3 -1 reviewed p.R120W 0.812 169 0% 139 23% 114 27.1% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Laminin_N,HMMSmart_LamNT CAMKV 79012 genome.wustl.edu 37 3 49896822 49896822 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024046.3 -1 validated p.A479T 1.000 115 0% 101 16.8% 0 - benign(0.135) deleterious(0.01) neutral(0.417) NULL RBM6 10180 genome.wustl.edu 37 3 50098640 50098640 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005777.2 +1 validated p.R780Q 1.000 386 0% 311 33.8% 16 56.2% benign(0.066) deleterious(0) neutral(0.449) superfamily_SSF54928 DOCK3 1795 genome.wustl.edu 37 3 51367625 51367625 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004947.3 +1 validated p.D1153 0.939 74 0% 65 33.8% 0 - - - - NULL DNAH1 25981 genome.wustl.edu 37 3 52409985 52409985 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015512.4 +1 validated p.E2392* 1.000 159 0% 126 30.2% 2 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases PBRM1 55193 genome.wustl.edu 37 3 52678795 52678795 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018165.4 -1 validated p.S275* 1.000 117 0% 185 21.6% 0 - - - - HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain SFMBT1 51460 genome.wustl.edu 37 3 52950218 52950218 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005158.1 -1 reviewed p.S476 0.703 70 0% 48 54.2% 3 0% - - - NULL ERC2 26059 genome.wustl.edu 37 3 56468947 56468947 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015576.1 -1 validated p.R30Q 1.000 183 0.5% 174 25.9% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL CCDC66 285331 genome.wustl.edu 37 3 56653888 56653888 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001141947.1 +1 validated p.R907* 0.998 230 0% 179 15.6% 5 20% - - - NULL ASB14 142686 genome.wustl.edu 37 3 57322249 57322249 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000389601 -1 known p.G83S 1.000 228 0% 161 27.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00248,superfamily_Ankyrin repeat DNAH12 201625 genome.wustl.edu 37 3 57443649 57443649 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178504.4 -1 validated p.K1022N 1.000 182 0% 204 23.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DHC_N2 SLMAP 7871 genome.wustl.edu 37 3 57893681 57893681 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000416658 +1 known p.R115* 0.983 179 0% 150 24% 2 0% - - - NULL PXK 54899 genome.wustl.edu 37 3 58385103 58385103 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000479134 +1 known p.C148* 1.000 227 0% 204 22.5% 4 25% probably_damaging(0.999) tolerated(0.1) deleterious(0.777) superfamily_Protein kinase-like (PK-like) CADPS 8618 genome.wustl.edu 37 3 62751571 62751571 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003716.3 -1 reviewed p.M177T 1.000 142 0% 78 10.3% 1 0% benign(0.055) tolerated(0.39) neutral(0.019) NULL PROK2 60675 genome.wustl.edu 37 3 71821970 71821970 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001126128.1 -1 reviewed p.F99L 0.854 115 0% 105 21% 0 - benign(0.001) tolerated(0.67) neutral(0.003) HMMPfam_Prokineticin,superfamily_Colipase-like EBLN2 55096 genome.wustl.edu 37 3 73111877 73111877 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018029.3 +1 provisional p.M215I 0.000 91 0% 82 32.9% 1 100% possibly_damaging(0.444) deleterious(0.01) deleterious(0.550) HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir ROBO2 6092 genome.wustl.edu 37 3 77530263 77530263 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002942.3 +1 reviewed p.K187T 1.000 222 0% 204 22.1% 15 33.3% probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin POU1F1 5449 genome.wustl.edu 37 3 87313486 87313486 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001122757.1 -1 reviewed p.E157* 1.000 191 0% 185 21.1% 0 - - - - HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA ZNF654 55279 genome.wustl.edu 37 3 88189245 88189245 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018293.2 +1 validated p.H262P 1.000 142 0% 108 20.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers EPHA3 2042 genome.wustl.edu 37 3 89462293 89462293 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005233.5 +1 reviewed p.K589Q 1.000 148 0% 112 31.2% 0 - benign(0.028) tolerated(0.31) neutral(0.029) NULL PROS1 5627 genome.wustl.edu 37 3 93603712 93603712 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000313.3 -1 reviewed p.R451Q 1.000 196 0% 142 25.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1 OR5H6 79295 genome.wustl.edu 37 3 97983879 97983879 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005479.1 +1 provisional p.R251* 0.000 162 0% 169 20.1% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 NIT2 56954 genome.wustl.edu 37 3 100065064 100065064 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020202.4 +1 validated p.R157Q 1.000 440 0% 312 39.7% 24 37.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse ABI3BP 25890 genome.wustl.edu 37 3 100645227 100645227 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015429.3 -1 validated p.L67I 1.000 485 0% 393 19.8% 8 75% possibly_damaging(0.625) tolerated(0.52) neutral(0.227) NULL RG9MTD1 54931 genome.wustl.edu 37 3 101283714 101283714 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017819.2 +1 provisional p.R30I 0.076 231 0% 267 17.6% 2 0% possibly_damaging(0.92) deleterious(0.05) deleterious(0.716) NULL CEP97 79598 genome.wustl.edu 37 3 101443560 101443560 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024548.2 +1 provisional p.E14K 1.000 73 0% 73 30.1% 3 33.3% benign(0.003) deleterious(0) neutral(0.445) NULL CEP97 79598 genome.wustl.edu 37 3 101483873 101483873 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024548.2 +1 provisional p.E692D 0.995 192 0.5% 228 20.2% 1 100% possibly_damaging(0.521) deleterious(0.04) deleterious(0.524) NULL MYH15 22989 genome.wustl.edu 37 3 108124192 108124192 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014981.1 -1 validated p.N1597H 0.998 97 0% 110 29.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Myosin_tail_1 MORC1 27136 genome.wustl.edu 37 3 108725917 108725917 + Missense_Mutation SNP C C T rs138435095 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014429.3 -1 reviewed p.E576K 0.001 151 0% 158 21.5% 0 - benign(0) tolerated(0.73) neutral(0.002) NULL GCET2 257144 genome.wustl.edu 37 3 111842308 111842308 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152785.3 -1 reviewed p.H177Q 0.001 156 0% 142 34.5% 1 0% possibly_damaging(0.92) deleterious(0.02) deleterious(0.754) NULL SLC9A10 285335 genome.wustl.edu 37 3 111873861 111873861 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_183061.1 -1 validated p.E1134* 0.000 329 0% 312 26.6% 0 - - - - NULL SLC9A10 285335 genome.wustl.edu 37 3 111983118 111983118 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_183061.1 -1 validated p.H317 0.042 114 0% 122 9.8% 0 - - - - HMMPfam_Na_H_Exchanger ZDHHC23 254887 genome.wustl.edu 37 3 113675205 113675205 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173570.3 +1 validated p.E298* 1.000 418 0% 413 29.8% 1 0% - - - HMMPfam_zf-DHHC TMEM39A 55254 genome.wustl.edu 37 3 119151054 119151054 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018266.1 -1 provisional p.F414C 1.000 74 0% 73 30.1% 22 59% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Tmp39 NR1I2 8856 genome.wustl.edu 37 3 119534204 119534204 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022002.2 +1 reviewed p.L363 0.997 45 0% 42 38.1% 0 - - - - HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor HGD 3081 genome.wustl.edu 37 3 120363206 120363206 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000187.3 -1 reviewed p.V245A 1.000 118 0.8% 102 34.3% 145 52.4% possibly_damaging(0.725) deleterious(0) deleterious(0.708) HMMPfam_HgmA,superfamily_RmlC-like cupins POLQ 10721 genome.wustl.edu 37 3 121212507 121212507 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_199420.3 -1 validated p.Q780H 1.000 148 0% 165 13.9% 0 - possibly_damaging(0.541) tolerated(0.1) deleterious(0.470) NULL ARGFX 503582 genome.wustl.edu 37 3 121303897 121303897 + Silent SNP G G A rs185718718 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001012659.1 +1 validated p.P118 0.000 130 0% 90 42.2% 0 - - - - HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1 GOLGB1 2804 genome.wustl.edu 37 3 121413816 121413816 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004487.3 -1 validated p.E1847* 0.995 101 0% 97 36.1% 3 66.6% - - - NULL GOLGB1 2804 genome.wustl.edu 37 3 121414662 121414662 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004487.3 -1 validated p.L1565F 1.000 282 0% 275 30.2% 1 100% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL WDR5B 54554 genome.wustl.edu 37 3 122134062 122134062 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019069.3 -1 reviewed p.K105T 1.000 173 0% 191 24.6% 1 0% benign(0.013) tolerated(0.1) neutral(0.287) HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 SEMA5B 54437 genome.wustl.edu 37 3 122647440 122647440 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001031702.2 -1 validated p.R187Q 0.999 62 0% 35 28.6% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain PDIA5 10954 genome.wustl.edu 37 3 122842977 122842977 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000316218 +1 known p.R225H 0.925 81 0% 61 32.8% 49 57.1% probably_damaging(0.995) tolerated(0.14) deleterious(0.707) superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin PDIA5 10954 genome.wustl.edu 37 3 122880293 122880293 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000469649 +1 known p.R75* 0.966 87 0% 57 10.5% 22 0% - - - superfamily_Thioredoxin-like PTPLB 201562 genome.wustl.edu 37 3 123301169 123301169 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198402.3 -1 provisional p.V55F 0.999 108 0% 124 25.8% 8 12.5% benign(0.008) tolerated(0.42) neutral(0.014) NULL UMPS 7372 genome.wustl.edu 37 3 124456609 124456609 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000373.3 +1 reviewed p.R169C 0.943 224 0% 184 33.2% 33 27.2% benign(0.045) deleterious(0.01) neutral(0.408) superfamily_PRTase-like RHO 6010 genome.wustl.edu 37 3 129249801 129249801 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000511172 +1 known p.R91W 0.953 98 0% 85 14.1% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like COL6A5 256076 genome.wustl.edu 37 3 130095474 130095474 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153264.5 +1 validated p.S154 0.000 148 0% 136 20.6% 0 - - - - HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 COL6A5 256076 genome.wustl.edu 37 3 130095664 130095664 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153264.5 +1 validated p.D218N 0.001 89 0% 97 29.9% 0 - benign(0.002) - - NULL COL6A5 256076 genome.wustl.edu 37 3 130188096 130188096 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000512836 +1 known p.R668* 0.691 211 0% 143 17.5% 0 - - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like NUDT16 131870 genome.wustl.edu 37 3 131102043 131102043 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152395.2 +1 validated p.R116Q 1.000 200 0% 145 20.7% 75 29.3% benign(0.151) tolerated(0.36) neutral(0.034) superfamily_Nudix DNAJC13 23317 genome.wustl.edu 37 3 132192017 132192017 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015268.3 +1 validated p.R746Q 1.000 144 1.4% 142 22.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat TF 7018 genome.wustl.edu 37 3 133485147 133485147 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001063.3 +1 reviewed p.K452N 0.956 440 0% 331 17.2% 0 - probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II MSL2 55167 genome.wustl.edu 37 3 135870346 135870346 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018133.3 -1 validated p.K459N 1.000 128 0% 100 27% 7 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL DZIP1L 199221 genome.wustl.edu 37 3 137811259 137811259 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173543.2 -1 validated p.K279T 0.262 236 0% 295 34.2% 0 - possibly_damaging(0.767) deleterious(0.02) deleterious(0.667) NULL ARMC8 25852 genome.wustl.edu 37 3 137940835 137940835 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015396.3 +1 validated p.P50S 1.000 377 0% 369 22.5% 6 50% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold PIK3CB 5291 genome.wustl.edu 37 3 138374245 138374245 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006219.1 -1 provisional p.D1067Y 1.000 140 0% 156 28.8% 16 81.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_PI3Kc TFDP2 7029 genome.wustl.edu 37 3 141678639 141678639 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006286.4 -1 reviewed p.D250Y 1.000 220 0.5% 189 19% 15 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DP XRN1 54464 genome.wustl.edu 37 3 142142427 142142427 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019001.3 -1 validated p.R229* 1.000 453 0% 466 23.4% 0 - - - - NULL PLS1 5357 genome.wustl.edu 37 3 142430379 142430379 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145319.1 +1 reviewed p.L556V 1.000 229 0% 226 26.5% 14 42.8% possibly_damaging(0.694) tolerated(0.54) neutral(0.257) HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology SLC9A9 285195 genome.wustl.edu 37 3 143513874 143513874 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173653.3 -1 reviewed p.L168V 0.999 160 0.6% 122 27% 2 0% benign(0) tolerated(0.54) neutral(0.007) HMMPfam_Na_H_Exchanger SERP1 27230 genome.wustl.edu 37 3 150263564 150263564 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014445.3 -1 validated p.R29I 1.000 172 0% 148 32.4% 410 41.9% benign(0.427) deleterious(0) deleterious(0.584) HMMPfam_RAMP4 MED12L 116931 genome.wustl.edu 37 3 150874030 150874030 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_053002.4 +1 reviewed p.G213 0.853 122 0% 136 18.4% 0 - - - - NULL P2RY14 9934 genome.wustl.edu 37 3 150931428 150931428 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001081455.1 -1 reviewed p.S226L 0.024 183 0% 180 30.6% 0 - benign(0.177) tolerated(0.25) neutral(0.053) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like P2RY12 64805 genome.wustl.edu 37 3 151056273 151056273 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022788.3 -1 reviewed p.D121N 1.000 107 0% 98 37.8% 0 - probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMPfam_7tm_1,superfamily_SSF81321 MED12L 116931 genome.wustl.edu 37 3 151090493 151090493 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_053002.4 +1 reviewed p.S1233F 1.000 175 0% 134 34.3% 0 - probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL AADACL2 344752 genome.wustl.edu 37 3 151475056 151475056 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207365.3 +1 validated p.D294Y 0.000 149 0% 140 15.7% 0 - possibly_damaging(0.776) deleterious(0.02) deleterious(0.672) HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases GMPS 8833 genome.wustl.edu 37 3 155628636 155628636 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003875.2 +1 reviewed p.R228* 0.998 127 0% 145 21.4% 13 0% - - - superfamily_Class I glutamine amidotransferase-like,superfamily_Adenine nucleotide alpha hydrolases-like IL12A 3592 genome.wustl.edu 37 3 159710816 159710816 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000882.2 +1 reviewed p.E94D 0.503 167 0% 126 25.4% 1 100% benign(0.001) tolerated(0.3) neutral(0.029) HMMPfam_IL12,superfamily_4_helix_cytokine PPM1L 151742 genome.wustl.edu 37 3 160474291 160474291 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139245.2 +1 provisional p.E65D 1.000 126 0% 92 26.1% 9 33.3% possibly_damaging(0.882) tolerated(0.48) neutral(0.355) NULL PPM1L 151742 genome.wustl.edu 37 3 160786805 160786805 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139245.2 +1 provisional p.R315* 0.998 112 0% 71 14.1% 0 - - - - HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C SLITRK3 22865 genome.wustl.edu 37 3 164906440 164906440 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014926.2 -1 validated p.L727I 0.000 50 0% 48 25% 0 - benign(0.008) tolerated(0.41) neutral(0.015) NULL SLITRK3 22865 genome.wustl.edu 37 3 164908029 164908029 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014926.2 -1 validated p.S197Y 1.000 138 0% 138 37.7% 0 - probably_damaging(0.982) tolerated(0.14) deleterious(0.676) superfamily_SSF52058 ZBBX 79740 genome.wustl.edu 37 3 166958590 166958590 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024687.2 -1 validated p.K798N 0.002 309 0% 230 19.1% 5 40% possibly_damaging(0.495) deleterious(0) deleterious(0.610) NULL ZBBX 79740 genome.wustl.edu 37 3 167000193 167000193 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024687.2 -1 validated p.R657Q 0.001 211 0% 192 10.9% 1 100% benign(0.07) deleterious(0) neutral(0.450) NULL ZBBX 79740 genome.wustl.edu 37 3 167040008 167040008 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024687.2 -1 validated p.E294K 1.000 227 0% 207 24.2% 1 100% probably_damaging(0.971) deleterious(0) deleterious(0.857) NULL PDCD10 11235 genome.wustl.edu 37 3 167402162 167402162 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007217.3 -1 reviewed p.F191 1.000 201 0% 187 15.5% 7 28.5% - - - NULL GOLIM4 27333 genome.wustl.edu 37 3 167762666 167762666 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014498.3 -1 reviewed p.D106Y 1.000 135 0% 134 11.9% 7 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC2A2 6514 genome.wustl.edu 37 3 170723772 170723772 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000340.1 -1 reviewed p.Y245* 0.997 202 0% 146 25.3% 0 - - - - HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter SLC2A2 6514 genome.wustl.edu 37 3 170732374 170732374 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000340.1 -1 reviewed p.E85D 0.002 365 0% 332 38.3% 0 - probably_damaging(0.973) tolerated(0.18) deleterious(0.471) HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter TNIK 23043 genome.wustl.edu 37 3 170819392 170819392 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015028.2 -1 validated p.E813* 1.000 728 0% 587 30.8% 1 0% - - - NULL MIR569 693154 genome.wustl.edu 37 3 170824481 170824481 + RNA SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000385228 -1 known NULL 1.000 341 0% 260 21.2% 0 - - - - - TNIK 23043 genome.wustl.edu 37 3 171087420 171087420 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015028.2 -1 validated p.Q38K 1.000 225 0% 229 17% 0 - possibly_damaging(0.869) tolerated(0.06) deleterious(0.659) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase ECT2 1894 genome.wustl.edu 37 3 172520673 172520673 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018098.4 +1 reviewed p.R639Q 1.000 154 0% 157 26.1% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_PH domain-like PEX5L 51555 genome.wustl.edu 37 3 179597886 179597886 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016559.1 -1 provisional p.L112 0.988 432 0% 417 19.9% 0 - - - - NULL ATP11B 23200 genome.wustl.edu 37 3 182553928 182553928 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014616.1 +1 validated p.R141W 1.000 300 0% 252 28.6% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_E1-E2_ATPase,superfamily_SSF81653 ATP11B 23200 genome.wustl.edu 37 3 182563301 182563301 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014616.1 +1 validated p.E254* 1.000 86 0% 116 23.3% 0 - - - - superfamily_SSF81653 ATP11B 23200 genome.wustl.edu 37 3 182577014 182577014 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014616.1 +1 validated p.S356* 1.000 241 0% 252 13.9% 1 0% - - - NULL ATP11B 23200 genome.wustl.edu 37 3 182591616 182591616 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014616.1 +1 validated p.R689* 1.000 208 0% 202 22.3% 1 0% - - - HMMPfam_Hydrolase,superfamily_SSF56784 KLHL24 54800 genome.wustl.edu 37 3 183368618 183368618 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017644.3 +1 validated p.F158L 1.000 164 0% 172 11.6% 7 14.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB TMEM41A 90407 genome.wustl.edu 37 3 185214713 185214713 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080652.3 -1 validated p.R59Q 0.998 60 0% 38 18.4% 8 25% benign(0.151) tolerated(0.46) neutral(0.026) NULL C3orf65 646600 genome.wustl.edu 37 3 185434239 185434239 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000296270 +1 known p.K24N 0.226 152 0% 138 18.1% 0 - possibly_damaging(0.952) - - NULL KNG1 3827 genome.wustl.edu 37 3 186435504 186435504 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001102416.2 +1 reviewed p.R58H 0.978 153 0% 105 18.1% 0 - probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin BCL6 604 genome.wustl.edu 37 3 187446312 187446312 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001130845.1 -1 reviewed p.R459H 1.000 55 0% 35 11.4% 36 0% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL CLDN16 10686 genome.wustl.edu 37 3 190105994 190105994 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006580.3 +1 reviewed p.K29T 0.000 162 0% 126 31% 0 - possibly_damaging(0.931) deleterious(0) deleterious(0.822) NULL ACAP2 23527 genome.wustl.edu 37 3 195047656 195047656 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000439758 -1 known p.E105* 1.000 390 0% 439 23.9% 5 0% benign(0.086) tolerated(0.44) neutral(0.019) NULL MUC4 4585 genome.wustl.edu 37 3 195493607 195493607 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000470451 -1 known p.R4429* 0.000 96 0% 85 16.5% 15 0% - - - NULL MFI2 4241 genome.wustl.edu 37 3 196736579 196736579 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005929.4 -1 reviewed p.G479S 0.016 33 0% 33 12.1% 5 0% benign(0.201) deleterious(0.03) neutral(0.384) HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II KIAA0226 9711 genome.wustl.edu 37 3 197423898 197423898 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145642.2 -1 validated p.K383N 0.960 157 0% 134 28.4% 11 27.2% benign(0) tolerated(0.31) neutral(0.027) NULL LRCH3 84859 genome.wustl.edu 37 3 197541907 197541907 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032773.2 +1 provisional p.T131P 1.000 108 0% 138 34.8% 2 50% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_LRR_1,superfamily_SSF52058 LMLN 89782 genome.wustl.edu 37 3 197717491 197717491 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136049.2 +1 reviewed p.R331* 1.000 298 0.3% 287 19.2% 2 0% - - - "HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain" LMLN 89782 genome.wustl.edu 37 3 197765604 197765604 + RNA SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_026786.1 +1 reviewed NULL 0.000 141 0% 148 25% 3 0% - - - - ENSG00000186777 0 genome.wustl.edu 37 4 264504 264504 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000414523 -1 known p.K434T 0.002 26 0% 38 13.2% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF141 7700 genome.wustl.edu 37 4 367391 367391 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000240499 +1 known p.H389N 1.000 60 0% 49 16.3% 0 - possibly_damaging(0.941) deleterious(0) deleterious(0.831) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF721 170960 genome.wustl.edu 37 4 435518 435518 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133474.2 -1 validated p.K913T 0.603 220 0% 193 19.2% 2 50% benign(0.406) tolerated(0.26) neutral(0.165) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers POLN 353497 genome.wustl.edu 37 4 2087415 2087415 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181808.2 -1 validated p.L708V 0.998 75 0% 58 15.5% 0 - possibly_damaging(0.452) tolerated(0.37) neutral(0.167) HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases HAUS3 79441 genome.wustl.edu 37 4 2240473 2240473 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024511.5 -1 provisional p.R403C 0.554 191 0.5% 201 22.4% 1 100% possibly_damaging(0.827) deleterious(0) deleterious(0.758) NULL HAUS3 79441 genome.wustl.edu 37 4 2242008 2242008 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024511.5 -1 provisional p.F222L 1.000 94 0% 105 23.8% 0 - possibly_damaging(0.743) deleterious(0) deleterious(0.717) NULL KIAA0232 9778 genome.wustl.edu 37 4 6862935 6862935 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001100590.1 +1 validated p.R276* 0.990 82 0% 106 21.7% 3 0% - - - NULL LOC100288554 100288554 genome.wustl.edu 37 4 9424063 9424063 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002342446.1 +1 model p.L58I 0.999 515 0% 518 22.6% 0 - - - - NULL DEFB131 644414 genome.wustl.edu 37 4 9452112 9452112 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040448.2 +1 validated p.C29R 0.058 119 0% 103 31.1% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL BOD1L 259282 genome.wustl.edu 37 4 13602068 13602068 + Silent SNP G G A rs139854434 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_148894.2 -1 validated p.F2152 0.011 44 0% 54 11.1% 6 33.3% - - - superfamily_SSF81995 FAM184B 27146 genome.wustl.edu 37 4 17710886 17710886 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015688.1 -1 validated p.R175W 0.091 30 0% 15 26.7% 0 - possibly_damaging(0.909) deleterious(0.03) deleterious(0.726) NULL NCAPG 64151 genome.wustl.edu 37 4 17830003 17830003 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022346.3 +1 validated p.E586K 1.000 181 0.6% 178 35.4% 2 0% benign(0.313) tolerated(0.25) neutral(0.135) superfamily_ARM-type_fold SLIT2 9353 genome.wustl.edu 37 4 20525786 20525786 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004787.1 +1 provisional p.K475T 1.000 108 0% 111 28.8% 2 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like SLIT2 9353 genome.wustl.edu 37 4 20543147 20543147 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004787.1 +1 provisional p.R683I 1.000 207 0% 206 24.8% 4 50% benign(0.127) tolerated(0.08) neutral(0.310) HMMSmart_SM00082,superfamily_L domain-like SLIT2 9353 genome.wustl.edu 37 4 20555489 20555489 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004787.1 +1 provisional p.K875E 0.999 246 0% 236 32.6% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00082 SEL1L3 23231 genome.wustl.edu 37 4 25769178 25769178 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015187.3 -1 validated p.F938L 1.000 307 0% 275 20% 50 36% benign(0) tolerated(0.57) neutral(0.006) superfamily_HCP-like CCKAR 886 genome.wustl.edu 37 4 26483761 26483761 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000730.2 -1 reviewed p.K262N 0.000 100 0% 75 25.3% 0 - benign(0.001) tolerated(0.34) neutral(0.023) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ARAP2 116984 genome.wustl.edu 37 4 36122870 36122870 + Silent SNP C C T rs182096270 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015230.2 -1 reviewed p.T1275 0.980 164 0% 157 16.6% 1 0% - - - HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP DTHD1 401124 genome.wustl.edu 37 4 36296524 36296524 + Silent SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136536.3 +1 validated p.T212 0.957 397 0% 407 32.9% 2 50% - - - NULL KIAA1239 57495 genome.wustl.edu 37 4 37447780 37447780 + Missense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001144990.1 +1 validated p.E1390D 1.000 55 0% 59 22% 0 - possibly_damaging(0.948) tolerated(0.09) deleterious(0.688) HMMSmart_WD40,superfamily_WD40_like TLR10 81793 genome.wustl.edu 37 4 38776305 38776305 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001017388.1 -1 reviewed p.K303Q 0.727 178 0% 166 27.1% 1 0% possibly_damaging(0.81) deleterious(0.01) deleterious(0.711) superfamily_SSF52058 WDR19 57728 genome.wustl.edu 37 4 39254826 39254826 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025132.3 +1 reviewed p.I930 1.000 112 0% 133 22.6% 6 50% - - - HMMPfam_Clathrin,superfamily_TPR-like RFC1 5981 genome.wustl.edu 37 4 39290387 39290387 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002913.3 -1 reviewed p.K1146N 0.997 270 0% 352 20.2% 2 50% possibly_damaging(0.45) tolerated(0.13) neutral(0.400) NULL KLB 152831 genome.wustl.edu 37 4 39439365 39439365 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175737.3 +1 validated p.I452T 0.195 320 0% 244 10.2% 0 - benign(0.024) deleterious(0.01) neutral(0.407) HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat APBB2 323 genome.wustl.edu 37 4 40818228 40818228 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173075.4 -1 reviewed p.R698* 0.744 346 0.3% 342 34.8% 15 26.6% - - - NULL TMEM33 55161 genome.wustl.edu 37 4 41941236 41941236 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018126.2 +1 validated p.Y55C 1.000 119 0% 94 18.1% 52 44.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UPF0121 DCAF4L1 285429 genome.wustl.edu 37 4 41984086 41984086 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001029955.3 +1 validated p.E93K 0.980 102 0% 78 43.6% 0 - benign(0.003) tolerated(1) - superfamily_WD40 repeat-like SLC30A9 10463 genome.wustl.edu 37 4 42041010 42041010 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006345.3 +1 validated p.S226Y 0.825 332 0.3% 325 33.8% 4 25% benign(0.003) deleterious(0.04) neutral(0.349) NULL GRXCR1 389207 genome.wustl.edu 37 4 42965083 42965083 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080476.1 +1 provisional p.E187K 1.000 289 0% 229 31.9% 0 - possibly_damaging(0.799) deleterious(0.04) deleterious(0.650) HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd GABRA2 2555 genome.wustl.edu 37 4 46264027 46264027 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000807.2 -1 reviewed p.F325L 1.000 237 0% 202 14.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore GABRA4 2557 genome.wustl.edu 37 4 46930528 46930528 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000809.2 -1 reviewed p.R460Q 0.001 148 0% 132 10.6% 0 - benign(0) tolerated(0.32) neutral(0.024) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM SCFD2 152579 genome.wustl.edu 37 4 54218822 54218822 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152540.3 -1 validated p.L317P 0.991 278 0% 238 32.4% 4 50% possibly_damaging(0.951) tolerated(0.13) deleterious(0.647) NULL KIT 3815 genome.wustl.edu 37 4 55570008 55570008 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000222.2 +1 reviewed p.A292V 1.000 216 0% 192 10.9% 0 - possibly_damaging(0.91) deleterious(0.04) deleterious(0.712) HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 KIT 3815 genome.wustl.edu 37 4 55592206 55592206 + Splice_Site SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001093772.1 +1 reviewed e9+2 1.000 119 0% 105 22.9% 1 100% - - - - EXOC1 55763 genome.wustl.edu 37 4 56750025 56750025 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001024924.1 +1 reviewed p.E421* 1.000 118 0% 130 23.1% 3 0% - - - HMMPfam_Sec3 AASDH 132949 genome.wustl.edu 37 4 57221514 57221514 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181806.2 -1 validated p.R313* 1.000 184 0% 141 14.9% 1 0% - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ARL9 132946 genome.wustl.edu 37 4 57384882 57384882 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_206919.1 +1 validated p.Y19H 0.986 421 0% 311 16.7% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases REST 5978 genome.wustl.edu 37 4 57797430 57797430 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005612.3 +1 reviewed p.E802 0.001 68 0% 78 19.2% 0 - - - - NULL CENPC1 1060 genome.wustl.edu 37 4 68378280 68378280 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001812.2 -1 reviewed p.K484N 0.397 214 0% 233 21.9% 0 - probably_damaging(0.957) deleterious(0) deleterious(0.845) NULL TMPRSS11F 389208 genome.wustl.edu 37 4 68939690 68939690 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207407.2 -1 validated p.R107Q 0.165 138 0% 119 25.2% 0 - possibly_damaging(0.883) tolerated(1) neutral(0.345) HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671 UGT2B17 7367 genome.wustl.edu 37 4 69433545 69433545 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001077.3 -1 reviewed p.Y220D 0.956 106 0% 77 20.8% 0 - possibly_damaging(0.626) tolerated(0.14) neutral(0.468) HMMPfam_UDPGT,superfamily_SSF53756 UGT2B15 7366 genome.wustl.edu 37 4 69528805 69528805 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001076.2 -1 validated p.S309Y 0.996 585 0.2% 512 22.1% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT2B28 54490 genome.wustl.edu 37 4 70146620 70146620 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_053039.1 +1 provisional p.K134N 0.163 265 0% 271 31.4% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase SULT1B1 27284 genome.wustl.edu 37 4 70620910 70620910 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014465.3 -1 reviewed p.R9Q 0.051 133 0% 140 21.4% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) NULL MUC7 4589 genome.wustl.edu 37 4 71347468 71347468 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145006.1 +1 reviewed p.S336L 0.000 501 0% 410 18.3% 0 - possibly_damaging(0.873) tolerated(0.12) deleterious(0.600) NULL ENAM 10117 genome.wustl.edu 37 4 71509909 71509909 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031889.2 +1 reviewed p.I922 0.000 114 0% 93 33.3% 0 - - - - NULL UTP3 57050 genome.wustl.edu 37 4 71555757 71555757 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020368.2 +1 validated p.R455C 1.000 186 0% 162 13.6% 13 7.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sas10_Utp3_C GRSF1 2926 genome.wustl.edu 37 4 71701931 71701931 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002092.3 -1 reviewed p.R153Q 1.000 121 0% 108 24.1% 95 30.5% possibly_damaging(0.57) deleterious(0.02) deleterious(0.578) HMMSmart_SM00360,superfamily_RNA-binding domain RBD ANKRD17 26057 genome.wustl.edu 37 4 73957526 73957526 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032217.3 -1 reviewed p.S1940L 1.000 77 0% 89 20.2% 21 47.6% possibly_damaging(0.662) tolerated(0.09) deleterious(0.530) NULL AFP 174 genome.wustl.edu 37 4 74302892 74302892 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134.1 +1 reviewed p.S34Y 0.998 385 0% 334 17.7% 0 - probably_damaging(0.996) tolerated(0.05) deleterious(0.807) superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN AFM 173 genome.wustl.edu 37 4 74364849 74364849 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001133.2 +1 reviewed p.T436 0.749 273 0% 238 33.2% 0 - - - - superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103 SDAD1 55153 genome.wustl.edu 37 4 76877273 76877273 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018115.2 -1 validated p.R624Q 1.000 564 0% 528 22% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SDA1 ENSG00000207307 0 genome.wustl.edu 37 4 77453395 77453395 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000384577 -1 novel NULL 0.073 38 0% 32 34.4% 0 - - - - - SOWAHB 345079 genome.wustl.edu 37 4 77818086 77818086 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001029870.1 -1 provisional p.T306N 0.876 24 0% 23 17.4% 1 100% probably_damaging(0.996) tolerated(0.06) deleterious(0.784) NULL BMP2K 55589 genome.wustl.edu 37 4 79808355 79808355 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198892.1 +1 reviewed p.D660A 1.000 229 0% 211 20.9% 0 - unknown(0) deleterious(0) - NULL RASGEF1B 153020 genome.wustl.edu 37 4 82377810 82377810 + Missense_Mutation SNP C C T rs144258756 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152545.1 -1 provisional p.E145K 0.999 215 0% 205 34.1% 7 28.5% benign(0.026) tolerated(0.22) neutral(0.043) HMMSmart_SM00229,superfamily_Ras GEF SEC31A 22872 genome.wustl.edu 37 4 83787987 83787987 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001077207.1 -1 reviewed p.R391* 1.000 150 0.7% 172 16.9% 21 0% - - - superfamily_WD40 repeat-like CDS1 1040 genome.wustl.edu 37 4 85540554 85540554 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001263.3 +1 reviewed p.L150I 1.000 203 0% 200 25% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_CTP_transf_1 WDFY3 23001 genome.wustl.edu 37 4 85654599 85654599 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014991.4 -1 reviewed p.R2386Q 1.000 160 0% 130 20.8% 4 0% possibly_damaging(0.951) tolerated(0.21) neutral(0.438) superfamily_Cyclin-like ABCG2 9429 genome.wustl.edu 37 4 89028403 89028403 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004827.2 -1 reviewed p.V404I 0.000 192 0% 175 18.3% 0 - benign(0) tolerated(1) - HMMPfam_ABC2_membrane PPM1K 152926 genome.wustl.edu 37 4 89190013 89190013 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152542.3 -1 validated p.R196Q 1.000 282 0.4% 215 25.6% 1 0% possibly_damaging(0.952) tolerated(0.3) neutral(0.424) HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C HERC6 55008 genome.wustl.edu 37 4 89349753 89349753 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017912.3 +1 validated p.M653V 0.000 116 0% 122 27.9% 1 100% benign(0.013) tolerated(0.09) neutral(0.297) NULL MMRN1 22915 genome.wustl.edu 37 4 90857582 90857582 + Missense_Mutation SNP C C A rs185952075 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007351.2 +1 reviewed p.F917L 0.974 152 0% 139 16.5% 0 - benign(0.001) tolerated(0.64) neutral(0.003) NULL GRID2 2895 genome.wustl.edu 37 4 94693573 94693573 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001510.2 +1 validated p.S983* 1.000 76 0% 85 18.8% 0 - - - - NULL MTTP 4547 genome.wustl.edu 37 4 100534293 100534293 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000253.2 +1 reviewed p.S738Y 0.999 281 0.4% 231 39.4% 0 - probably_damaging(0.996) tolerated(0.37) deleterious(0.481) NULL BANK1 55024 genome.wustl.edu 37 4 102839325 102839325 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017935.4 +1 reviewed p.K395N 0.999 55 0% 63 27% 0 - probably_damaging(0.988) tolerated(0.05) deleterious(0.783) superfamily_Ankyrin repeat MANBA 4126 genome.wustl.edu 37 4 103635610 103635610 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005908.3 -1 reviewed p.F220L 0.936 168 0% 156 15.4% 3 66.6% benign(0.003) tolerated(0.51) neutral(0.009) NULL SLC9B2 133308 genome.wustl.edu 37 4 103988684 103988684 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178833.4 -1 validated p.I8M 0.000 426 0% 396 22.5% 0 - benign(0) deleterious(0.02) neutral(0.383) NULL CENPE 1062 genome.wustl.edu 37 4 104041446 104041446 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001813.2 -1 validated p.S2396 0.050 405 0% 365 11.2% 0 - - - - NULL CENPE 1062 genome.wustl.edu 37 4 104053868 104053868 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001813.2 -1 validated p.F2302L 0.996 172 0% 185 18.4% 0 - possibly_damaging(0.888) deleterious(0) deleterious(0.792) NULL CENPE 1062 genome.wustl.edu 37 4 104061538 104061538 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001813.2 -1 validated p.R1930C 0.986 234 0% 253 26.9% 0 - probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL CENPE 1062 genome.wustl.edu 37 4 104080010 104080010 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001813.2 -1 validated p.T879A 0.950 128 0% 152 23% 0 - possibly_damaging(0.564) tolerated(0.59) neutral(0.197) NULL SGMS2 166929 genome.wustl.edu 37 4 108829850 108829850 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136257.1 +1 reviewed p.R286Q 1.000 249 0% 172 33.7% 27 40.7% probably_damaging(0.986) deleterious(0.01) deleterious(0.840) NULL CYP2U1 113612 genome.wustl.edu 37 4 108868531 108868531 + Splice_Site SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_183075.2 +1 reviewed e3-1 1.000 74 0% 69 24.6% 0 - - - - - CFI 3426 genome.wustl.edu 37 4 110670693 110670693 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000204.3 -1 reviewed p.R336* 0.993 303 0% 285 20.7% 203 3.4% - - - superfamily_Trypsin-like serine proteases EGF 1950 genome.wustl.edu 37 4 110885599 110885599 + Missense_Mutation SNP G G A rs185277473 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001963.4 +1 reviewed p.R494Q 1.000 368 0% 327 16.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF63825 ENPEP 2028 genome.wustl.edu 37 4 111480820 111480820 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001977.3 +1 validated p.R887I 1.000 301 0% 318 30.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ANK2 287 genome.wustl.edu 37 4 114208820 114208820 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001148.4 +1 reviewed p.I713 0.963 235 0% 190 10.5% 1 0% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK PRSS12 8492 genome.wustl.edu 37 4 119204145 119204145 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003619.2 -1 reviewed p.D721N 0.674 313 0.3% 205 35.6% 11 81.8% benign(0.103) tolerated(0.39) neutral(0.024) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases USP53 54532 genome.wustl.edu 37 4 120192462 120192462 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019050.2 +1 validated p.E483* 0.996 37 0% 58 15.5% 1 0% - - - NULL PRDM5 11107 genome.wustl.edu 37 4 121720897 121720897 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018699.2 -1 reviewed p.H317N 1.000 146 0.7% 148 17.6% 0 - probably_damaging(0.984) deleterious(0) deleterious(0.875) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers NDNF 79625 genome.wustl.edu 37 4 121957872 121957872 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024574.3 -1 validated p.L418 1.000 63 0% 76 42.1% 1 0% - - - HMMPfam_DUF2369 QRFPR 84109 genome.wustl.edu 37 4 122261627 122261627 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198179.2 -1 validated p.R160Q 0.761 190 0% 142 30.3% 0 - benign(0) tolerated(0.6) neutral(0.004) HMMPfam_7tm_1,superfamily_SSF81321 BBS7 55212 genome.wustl.edu 37 4 122770018 122770018 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_176824.1 -1 reviewed p.I305 0.052 236 0% 206 25.7% 1 0% - - - NULL ANKRD50 57182 genome.wustl.edu 37 4 125592189 125592189 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020337.2 -1 validated p.G748D 1.000 143 0% 144 13.2% 14 64.2% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK ANKRD50 57182 genome.wustl.edu 37 4 125593522 125593522 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020337.2 -1 validated p.L304I 1.000 136 0% 118 32.2% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ANKRD50 57182 genome.wustl.edu 37 4 125600053 125600053 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020337.2 -1 validated p.L174I 1.000 116 0.9% 90 25.6% 1 100% probably_damaging(0.972) tolerated(0.21) neutral(0.458) NULL FAT4 79633 genome.wustl.edu 37 4 126239097 126239097 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024582.4 +1 validated p.R511C 1.000 87 0% 79 35.4% 1 0% probably_damaging(0.989) tolerated(0.17) deleterious(0.498) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like HSPA4L 22824 genome.wustl.edu 37 4 128722949 128722949 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014278.2 +1 provisional p.A180V 1.000 258 0.4% 253 28.1% 1 100% probably_damaging(0.973) deleterious(0.02) deleterious(0.798) HMMPfam_HSP70,superfamily_SSF53067 TBC1D9 23158 genome.wustl.edu 37 4 141600907 141600907 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015130.2 -1 validated p.L151 1.000 207 0% 174 24.7% 1 100% - - - HMMPfam_GRAM,HMMSmart_SM00568 RNF150 57484 genome.wustl.edu 37 4 141832470 141832470 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020724.1 -1 validated p.F342 0.685 132 0% 115 19.1% 7 28.5% - - - NULL HHIP 64399 genome.wustl.edu 37 4 145635477 145635477 + Missense_Mutation SNP C C G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022475.1 +1 reviewed p.S508R 0.999 362 0% 327 28.4% 2 0% probably_damaging(1) tolerated(0.63) deleterious(0.503) superfamily_Soluble quinoprotein glucose dehydrogenase C4orf51 646603 genome.wustl.edu 37 4 146601389 146601389 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080531.1 +1 inferred p.L12I 0.021 265 0% 201 36.8% 0 - possibly_damaging(0.936) - - NULL TTC29 83894 genome.wustl.edu 37 4 147824873 147824873 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031956.2 -1 validated p.E137K 1.000 111 0% 102 26.5% 1 0% probably_damaging(0.99) tolerated(0.33) neutral(0.466) superfamily_TPR-like LRBA 987 genome.wustl.edu 37 4 151749774 151749774 + Splice_Site SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006726.2 -1 validated e29-1 0.916 172 0% 129 27.9% 0 - - - - - PET112 5188 genome.wustl.edu 37 4 152629190 152629190 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004564.2 -1 validated p.R276Q 1.000 126 0% 92 20.7% 12 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GatB_N FBXW7 55294 genome.wustl.edu 37 4 153244091 153244091 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033632.2 -1 reviewed p.R689Q 1.000 361 0.3% 302 22.2% 15 6.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00320 TIGD4 201798 genome.wustl.edu 37 4 153690664 153690664 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145720.2 -1 reviewed p.S498Y 1.000 51 0% 52 34.6% 0 - possibly_damaging(0.733) deleterious(0.01) deleterious(0.673) NULL TLR2 7097 genome.wustl.edu 37 4 154626130 154626130 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003264.3 +1 reviewed p.D691Y 1.000 110 0% 96 28.1% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR FGA 2243 genome.wustl.edu 37 4 155508048 155508048 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000508.3 -1 reviewed p.R178Q 1.000 146 0% 123 33.3% 3 100% probably_damaging(0.965) deleterious(0) deleterious(0.851) HMMPfam_Fib_alpha GRIA2 2891 genome.wustl.edu 37 4 158257528 158257528 + Splice_Site SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000826.3 +1 reviewed e11-1 1.000 162 0% 164 21.3% 0 - - - - - FAM198B 51313 genome.wustl.edu 37 4 159076911 159076911 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001128424.1 -1 validated p.S326Y 1.000 183 0% 136 30.9% 7 28.5% possibly_damaging(0.546) deleterious(0.02) deleterious(0.569) NULL RAPGEF2 9693 genome.wustl.edu 37 4 160271321 160271321 + Missense_Mutation SNP C C A rs186800143 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014247.2 +1 validated p.L1088I 1.000 103 0% 112 34.8% 1 100% possibly_damaging(0.766) deleterious(0.02) deleterious(0.667) NULL TMA16 55319 genome.wustl.edu 37 4 164440507 164440507 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000509657 +1 known p.E190* 1.000 113 0% 109 23.9% 3 0% probably_damaging(1) tolerated(0.15) deleterious(0.741) NULL CLCN3 1182 genome.wustl.edu 37 4 170628251 170628251 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173872.2 +1 validated p.R661 0.998 242 0% 194 28.4% 25 44% - - - HMMPfam_CBS GPM6A 2823 genome.wustl.edu 37 4 176561963 176561963 + Splice_Site SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000510747 -1 known e3-1 1.000 268 0% 277 18.8% 0 - benign(0.086) tolerated(0.1) neutral(0.293) - WDR17 116966 genome.wustl.edu 37 4 177046474 177046474 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_170710.4 +1 reviewed p.V277A 1.000 263 0% 233 22.7% 0 - possibly_damaging(0.823) deleterious(0.01) deleterious(0.717) HMMSmart_WD40,superfamily_Amine_DH_B_like WDR17 116966 genome.wustl.edu 37 4 177067288 177067288 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_170710.4 +1 reviewed p.L582I 0.996 225 0% 217 28.1% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 WDR17 116966 genome.wustl.edu 37 4 177072989 177072989 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000443118 +1 known p.Q44K 1.000 265 0% 245 13.1% 1 100% - - - NULL AGA 175 genome.wustl.edu 37 4 178360774 178360774 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000027.3 -1 reviewed p.K117T 1.000 230 0% 235 35.7% 30 6.6% benign(0.076) tolerated(0.4) neutral(0.021) HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases) ODZ3 55714 genome.wustl.edu 37 4 183710327 183710327 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080477.1 +1 provisional p.L1796I 1.000 90 0% 76 25% 0 - benign(0.247) tolerated(0.15) neutral(0.266) superfamily_ConA_like_lec_gl ODZ3 55714 genome.wustl.edu 37 4 183713952 183713952 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080477.1 +1 provisional p.L2043 1.000 106 0% 74 37.8% 0 - - - - NULL ODZ3 55714 genome.wustl.edu 37 4 183717847 183717847 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080477.1 +1 provisional p.F2424C 1.000 232 0% 202 33.7% 0 - probably_damaging(0.98) deleterious(0.05) deleterious(0.769) NULL TRAPPC11 60684 genome.wustl.edu 37 4 184601289 184601289 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021942.4 +1 validated p.D328Y 1.000 143 0% 165 32.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL PDLIM3 27295 genome.wustl.edu 37 4 186435941 186435941 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001114107.2 -1 reviewed p.S145L 1.000 192 0% 143 24.5% 0 - benign(0.313) deleterious(0.02) deleterious(0.481) HMMSmart_ZM KLKB1 3818 genome.wustl.edu 37 4 187155125 187155125 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000892.3 +1 reviewed p.D81N 1.000 263 0% 233 24.5% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1 ZFP42 132625 genome.wustl.edu 37 4 188924605 188924605 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_174900.3 +1 validated p.R215Q 0.988 152 0% 120 21.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_C2H2 and C2HC zinc fingers SLC9A3 6550 genome.wustl.edu 37 5 488464 488464 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004174.2 -1 validated p.F214 0.961 24 0% 19 47.4% 1 100% - - - HMMPfam_Na_H_Exchanger IRX4 50805 genome.wustl.edu 37 5 1879775 1879775 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016358.2 -1 validated p.F193 0.998 151 0% 106 16% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1 KIAA0947 23379 genome.wustl.edu 37 5 5463178 5463178 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015325.1 +1 validated p.S1244L 0.000 79 0% 73 19.2% 0 - benign(0.039) deleterious(0.04) neutral(0.351) NULL UBE2QL1 134111 genome.wustl.edu 37 5 6491376 6491376 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145161.1 +1 provisional p.R134C 1.000 125 0% 115 25.2% 3 33.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like CTNND2 1501 genome.wustl.edu 37 5 11082812 11082812 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001332.2 -1 validated p.L928 0.995 91 0% 79 20.3% 9 44.4% - - - superfamily_ARM repeat DNAH5 1767 genome.wustl.edu 37 5 13870926 13870926 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001369.2 -1 reviewed p.E1262* 1.000 192 0.5% 213 21.6% 0 - - - - superfamily_Spectrin CDH18 1016 genome.wustl.edu 37 5 19838916 19838916 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004934.3 -1 reviewed p.F60 1.000 290 0% 254 23.6% 0 - - - - superfamily_Cadherin PDZD2 23037 genome.wustl.edu 37 5 31799520 31799520 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178140.2 +1 reviewed p.S55 0.000 72 0% 64 10.9% 0 - - - - NULL PDZD2 23037 genome.wustl.edu 37 5 32090728 32090728 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178140.2 +1 reviewed p.L2392 0.975 59 0% 31 25.8% 1 0% - - - NULL TTC23L 153657 genome.wustl.edu 37 5 34864600 34864600 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144725.3 +1 validated p.E199* 0.303 176 0.6% 202 24.3% 0 - - - - superfamily_TPR-like AGXT2 64902 genome.wustl.edu 37 5 34998865 34998865 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031900.3 -1 reviewed p.R502C 0.953 655 0% 578 10.6% 0 - benign(0.051) deleterious(0.01) neutral(0.409) superfamily_PyrdxlP-dep_Trfase_major SPEF2 79925 genome.wustl.edu 37 5 35759764 35759764 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024867.3 +1 validated p.F1188C 0.929 140 0% 108 17.6% 0 - possibly_damaging(0.94) tolerated(0.18) neutral(0.441) NULL UGT3A1 133688 genome.wustl.edu 37 5 35965779 35965779 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152404.3 -1 validated p.V184 0.890 150 0% 154 27.3% 0 - - - - HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase UGT3A2 167127 genome.wustl.edu 37 5 36039639 36039639 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_174914.3 -1 validated p.D339N 0.835 140 0% 108 28.7% 0 - possibly_damaging(0.922) deleterious(0.02) deleterious(0.754) HMMPfam_UDPGT,superfamily_SSF53756 SLC1A3 6507 genome.wustl.edu 37 5 36608597 36608597 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004172.4 +1 reviewed p.K24 0.879 137 0% 143 23.1% 1 0% - - - NULL NIPBL 25836 genome.wustl.edu 37 5 37059185 37059185 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133433.3 +1 reviewed p.E2535K 1.000 282 0% 295 32.5% 3 0% possibly_damaging(0.724) tolerated(0.17) neutral(0.322) NULL C5orf42 65250 genome.wustl.edu 37 5 37224780 37224780 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000508244 -1 known p.R785Q 0.001 326 0.3% 304 21.7% 0 - benign(0.006) tolerated(0.79) neutral(0.001) NULL LIFR 3977 genome.wustl.edu 37 5 38489298 38489298 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127671.1 -1 reviewed p.S739 0.003 238 0% 211 21.8% 0 - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III LIFR 3977 genome.wustl.edu 37 5 38502875 38502875 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127671.1 -1 reviewed p.E488D 0.381 113 0% 95 28.4% 0 - benign(0.002) tolerated(0.5) neutral(0.010) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III C9 735 genome.wustl.edu 37 5 39316095 39316095 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001737.3 -1 reviewed p.E218K 1.000 169 0% 145 22.8% 0 - probably_damaging(0.979) deleterious(0.02) deleterious(0.805) NULL PRKAA1 5562 genome.wustl.edu 37 5 40765114 40765114 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_206907.3 -1 reviewed p.D365Y 1.000 171 0% 146 15.1% 4 75% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL PRKAA1 5562 genome.wustl.edu 37 5 40798287 40798287 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_206907.3 -1 reviewed p.R2H 1.000 48 0% 40 35% 0 - possibly_damaging(0.865) deleterious(0) deleterious(0.780) superfamily_Kinase_like CARD6 84674 genome.wustl.edu 37 5 40843572 40843572 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032587.3 +1 reviewed p.E201A 0.995 85 0% 69 33.3% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL C6 729 genome.wustl.edu 37 5 41159278 41159278 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000065.2 -1 reviewed p.E588* 0.001 273 0% 204 26% 3 0% - - - HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1 ZNF131 7690 genome.wustl.edu 37 5 43173452 43173452 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003432.1 +1 validated p.E329* 1.000 177 0% 150 29.3% 2 0% - - - HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667 MRPS30 10884 genome.wustl.edu 37 5 44811233 44811233 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016640.3 +1 reviewed p.R242* 1.000 217 0.5% 189 31.2% 7 14.2% - - - HMMPfam_PDCD9 ITGA1 3672 genome.wustl.edu 37 5 52157295 52157295 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181501.1 +1 reviewed p.S66Y 1.000 334 0% 307 33.6% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_Int_alpha,superfamily_SSF69318 ITGA1 3672 genome.wustl.edu 37 5 52216207 52216207 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181501.1 +1 reviewed p.R734Q 1.000 197 0% 170 17.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Integrin_alpha2,superfamily_SSF69179 HSPB3 8988 genome.wustl.edu 37 5 53751676 53751676 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006308.1 +1 provisional p.E19D 0.975 105 0% 80 12.5% 0 - possibly_damaging(0.533) tolerated(0.19) neutral(0.229) superfamily_HSP20-like chaperones SNX18 112574 genome.wustl.edu 37 5 53814696 53814696 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052870.2 +1 reviewed p.T305M 1.000 49 0% 34 11.8% 54 7.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain CDC20B 166979 genome.wustl.edu 37 5 54416281 54416281 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152623.2 -1 validated p.S438N 0.851 237 0% 228 20.2% 30 53.3% benign(0.001) tolerated(0.43) neutral(0.013) superfamily_WD40_like IL6ST 3572 genome.wustl.edu 37 5 55250735 55250735 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002184.2 -1 reviewed p.K451N 0.032 198 0% 161 25.5% 6 0% benign(0) tolerated(0.68) neutral(0.002) PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III ADAMTS6 11174 genome.wustl.edu 37 5 64766614 64766614 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_197941.2 -1 reviewed p.C151 1.000 122 0% 139 20.1% 1 100% - - - HMMPfam_Pep_M12B_propep PIK3R1 5295 genome.wustl.edu 37 5 67588951 67588951 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181523.1 +1 reviewed p.R348* 1.000 218 0% 205 31.7% 37 32.4% - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain PIK3R1 5295 genome.wustl.edu 37 5 67591146 67591146 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181523.1 +1 reviewed p.Y580C 1.000 315 0% 270 14.4% 98 33.6% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL CCDC125 202243 genome.wustl.edu 37 5 68581262 68581262 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_176816.3 -1 validated p.G378R 0.995 158 0% 136 23.5% 4 75% probably_damaging(0.995) deleterious(0.05) deleterious(0.803) NULL ZNF366 167465 genome.wustl.edu 37 5 71757279 71757279 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152625.1 -1 provisional p.F15 0.001 8 0.000 16 0.438 1 0% - - - NULL RGNEF 64283 genome.wustl.edu 37 5 73190251 73190251 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080479.2 +1 reviewed p.A1231V 0.053 185 0.5% 130 12.3% 5 20% benign(0.012) tolerated(0.23) neutral(0.042) NULL ENC1 8507 genome.wustl.edu 37 5 73931885 73931885 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003633.2 -1 validated p.K142N 1.000 73 0% 57 21.1% 14 50% benign(0.012) deleterious(0.01) neutral(0.406) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB NSA2 10412 genome.wustl.edu 37 5 74069801 74069801 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014886.3 +1 provisional p.L211V 0.098 182 0% 178 16.9% 138 29.7% probably_damaging(0.974) deleterious(0) deleterious(0.861) HMMPfam_Ribosomal_S8e FAM169A 26049 genome.wustl.edu 37 5 74077762 74077762 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015566.1 -1 validated p.E512D 0.881 66 0% 68 26.5% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SV2C 22987 genome.wustl.edu 37 5 75427709 75427709 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014979.1 +1 provisional p.S45F 1.000 274 0% 247 32.8% 0 - probably_damaging(0.957) deleterious(0) deleterious(0.845) superfamily_MFS_gen_substrate_transporter AGGF1 55109 genome.wustl.edu 37 5 76342240 76342240 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018046.3 +1 validated p.F313 0.875 151 0% 137 24.8% 0 - - - - NULL ARSB 411 genome.wustl.edu 37 5 78181427 78181427 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000046.3 -1 reviewed p.F374 0.999 93 0% 62 35.5% 12 16.6% - - - HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core CMYA5 202333 genome.wustl.edu 37 5 79030828 79030828 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153610.3 +1 validated p.E2080 0.001 38 0% 41 12.2% 0 - - - - NULL ZFYVE16 9765 genome.wustl.edu 37 5 79733161 79733161 + Nonsense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001105251.1 +1 validated p.Y219* 0.946 18 0% 42 21.4% 1 0% - - - NULL ZFYVE16 9765 genome.wustl.edu 37 5 79773161 79773161 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001105251.1 +1 validated p.E1529* 1.000 208 0% 171 19.9% 2 50% - - - NULL ANKRD34B 340120 genome.wustl.edu 37 5 79854371 79854371 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004441.2 -1 validated p.E490* 1.000 140 0% 114 33.3% 0 - - - - NULL RASGRF2 5924 genome.wustl.edu 37 5 80497155 80497155 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006909.1 +1 validated p.E934K 1.000 114 0% 97 32% 0 - possibly_damaging(0.858) deleterious(0.02) deleterious(0.714) HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF GPR98 84059 genome.wustl.edu 37 5 90040938 90040938 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032119.3 +1 reviewed p.V3542A 0.197 430 0.2% 376 20.2% 0 - benign(0.069) tolerated(0.1) neutral(0.291) NULL GPR98 84059 genome.wustl.edu 37 5 90074406 90074406 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032119.3 +1 reviewed p.R4277* 0.229 77 0% 60 33.3% 1 0% - - - HMMPfam_Calx-beta,HMMSmart_SM00237 GPR98 84059 genome.wustl.edu 37 5 90106339 90106339 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032119.3 +1 reviewed p.E5088* 0.997 59 0% 54 20.4% 0 - - - - HMMPfam_Calx-beta,HMMSmart_SM00237 KIAA0825 285600 genome.wustl.edu 37 5 93739393 93739393 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145678.1 -1 validated p.S923Y 0.000 199 0% 160 13.8% 0 - probably_damaging(0.982) deleterious(0.03) deleterious(0.791) NULL TTC37 9652 genome.wustl.edu 37 5 94805499 94805499 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014639.2 -1 provisional p.R1494H 0.988 123 0% 125 24% 20 30% probably_damaging(0.965) tolerated(0.16) neutral(0.466) NULL GIN1 54826 genome.wustl.edu 37 5 102433119 102433119 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017676.2 -1 validated p.H303N 0.001 197 0% 205 19.5% 0 - benign(0) tolerated(0.33) neutral(0.024) NULL PPIP5K2 23262 genome.wustl.edu 37 5 102484981 102484981 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015216.2 +1 provisional p.E290D 1.000 204 0.5% 204 18.6% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF56059 MAN2A1 4124 genome.wustl.edu 37 5 109120509 109120509 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002372.2 +1 reviewed p.L548I 1.000 211 0% 227 32.6% 1 0% benign(0.045) tolerated(0.41) neutral(0.017) HMMPfam_Alpha-mann_mid,superfamily_SSF88688 APC 324 genome.wustl.edu 37 5 112176873 112176873 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000038.4 +1 reviewed p.S1861Y 1.000 300 0% 313 10.9% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_APC_crr APC 324 genome.wustl.edu 37 5 112179312 112179312 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000038.4 +1 reviewed p.S2674Y 1.000 101 0% 103 33% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_EB1_binding CCDC112 153733 genome.wustl.edu 37 5 114605433 114605433 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040440.2 -1 validated p.Q465H 1.000 483 0% 560 18.6% 0 - benign(0.025) deleterious(0.01) neutral(0.407) NULL FEM1C 56929 genome.wustl.edu 37 5 114860292 114860292 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020177.2 -1 validated p.V523I 1.000 211 0% 205 25.4% 18 38.8% benign(0.003) deleterious(0.01) neutral(0.406) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK DMXL1 1657 genome.wustl.edu 37 5 118451946 118451946 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005509.4 +1 validated p.E220* 1.000 237 0% 227 35.2% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like DMXL1 1657 genome.wustl.edu 37 5 118483022 118483022 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005509.4 +1 validated p.L923R 0.001 154 0% 165 24.2% 0 - benign(0.002) tolerated(0.6) neutral(0.004) superfamily_WD40 repeat-like DMXL1 1657 genome.wustl.edu 37 5 118485628 118485628 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005509.4 +1 validated p.R1369H 0.990 166 0.6% 142 14.1% 2 0% possibly_damaging(0.925) deleterious(0.03) deleterious(0.738) NULL ZNF474 133923 genome.wustl.edu 37 5 121487909 121487909 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207317.1 +1 provisional p.R75I 0.000 48 0% 74 20.3% 0 - probably_damaging(0.99) tolerated(0.08) deleterious(0.742) NULL CSNK1G3 1456 genome.wustl.edu 37 5 122893236 122893236 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001044723.1 +1 validated p.F89 1.000 142 0% 208 31.7% 3 33.3% - - - superfamily_Kinase_like,HMMPfam_Pkinase CTXN3 613212 genome.wustl.edu 37 5 126993275 126993275 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001048252.2 +1 validated p.S21Y 1.000 120 0% 114 28.1% 0 - benign(0) tolerated(1) - NULL ADAMTS19 171019 genome.wustl.edu 37 5 128932270 128932270 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133638.3 +1 reviewed p.G458E 1.000 223 0% 259 36.7% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" FNIP1 96459 genome.wustl.edu 37 5 131007511 131007511 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133372.2 -1 validated p.K876Q 0.998 182 0% 168 20.8% 0 - benign(0.344) tolerated(0.24) neutral(0.146) NULL ACSL6 23305 genome.wustl.edu 37 5 131312412 131312412 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001009185.1 -1 validated p.N307D 1.000 70 0% 80 37.5% 0 - benign(0) tolerated(0.31) neutral(0.027) HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801 HSPA4 3308 genome.wustl.edu 37 5 132422479 132422479 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002154.3 +1 validated p.K305T 1.000 257 0% 265 33.6% 23 39.1% benign(0.11) tolerated(0.08) neutral(0.308) HMMPfam_HSP70,superfamily_SSF53067 LECT2 3950 genome.wustl.edu 37 5 135287028 135287028 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002302.2 -1 reviewed p.I58S 0.965 200 0% 165 36.4% 0 - benign(0.07) deleterious(0) neutral(0.450) HMMPfam_Peptidase_M23 TRPC7 57113 genome.wustl.edu 37 5 135561813 135561813 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000513104 -1 known p.R724I 1.000 261 0.4% 230 27.8% 0 - benign(0.065) tolerated(0.2) neutral(0.053) NULL ETF1 2107 genome.wustl.edu 37 5 137844488 137844488 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004730.2 -1 validated p.E367 1.000 278 0% 260 34.2% 9 88.8% - - - HMMPfam_eRF1_3,superfamily_L30e-like CTNNA1 1495 genome.wustl.edu 37 5 138240092 138240092 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001903.2 +1 validated p.R451* 1.000 287 0% 243 28.8% 94 2.1% - - - HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin TMEM173 340061 genome.wustl.edu 37 5 138858075 138858075 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198282.2 -1 validated p.R180Q 0.000 102 0% 69 18.8% 116 39.6% benign(0.001) tolerated(0.71) neutral(0.002) NULL PCDHA8 56140 genome.wustl.edu 37 5 140222682 140222682 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018911.2 +1 reviewed p.A592 0.382 72 0% 45 35.6% 0 - - - - HMMPfam_Cadherin,superfamily_Cadherin-like PCDHA8 56140 genome.wustl.edu 37 5 140223265 140223265 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018911.2 +1 reviewed p.E787K 0.001 87 0% 64 18.8% 0 - benign(0.009) tolerated(0.59) neutral(0.005) NULL PCDHA9 9752 genome.wustl.edu 37 5 140228494 140228494 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031857.1 +1 reviewed p.K138N 0.008 177 0% 119 26.9% 0 - benign(0.055) tolerated(0.3) neutral(0.032) HMMPfam_Cadherin,superfamily_Cadherin-like PCDHA12 56137 genome.wustl.edu 37 5 140256263 140256263 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018903.2 +1 reviewed p.K402N 0.967 105 0% 82 22% 0 - probably_damaging(0.974) deleterious(0.04) deleterious(0.765) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHAC1 56135 genome.wustl.edu 37 5 140307027 140307027 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018898.3 +1 reviewed p.E184K 0.992 25 0% 41 17.1% 2 0% possibly_damaging(0.932) tolerated(0.07) deleterious(0.698) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHAC2 56134 genome.wustl.edu 37 5 140347479 140347479 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018899.5 +1 reviewed p.E376D 1.000 37 0% 36 13.9% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Cadherin,superfamily_Cadherin-like PCDHB6 56130 genome.wustl.edu 37 5 140531026 140531026 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018939.2 +1 reviewed p.E396D 0.001 180 0% 138 21.7% 0 - benign(0.016) tolerated(0.38) neutral(0.018) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB10 56126 genome.wustl.edu 37 5 140573643 140573643 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018930.3 +1 reviewed p.I506 1.000 129 0% 99 10.1% 7 57.1% - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB13 56123 genome.wustl.edu 37 5 140595020 140595020 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018933.2 +1 reviewed p.A442V 0.487 144 0% 101 29.7% 2 50% benign(0) deleterious(0.01) neutral(0.406) HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin TAF7 6879 genome.wustl.edu 37 5 140699581 140699581 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005642.2 -1 reviewed p.E11K 1.000 258 0% 175 36% 133 45.1% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PCDHGA4 56111 genome.wustl.edu 37 5 140735052 140735052 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018917.2 +1 reviewed p.L95 0.998 72 0% 71 28.2% 0 - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like PCDHGA5 56110 genome.wustl.edu 37 5 140745836 140745836 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018918.2 +1 reviewed p.E647K 0.714 31 0% 19 26.3% 3 33.3% benign(0) tolerated(1) - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA7 56108 genome.wustl.edu 37 5 140763276 140763276 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018920.2 +1 reviewed p.D270 0.961 64 1.6% 61 11.5% 5 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGA7 56108 genome.wustl.edu 37 5 140763305 140763305 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018920.2 +1 reviewed p.S280Y 1.000 71 0% 72 41.7% 2 0% benign(0.011) tolerated(0.13) neutral(0.253) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGB4 8641 genome.wustl.edu 37 5 140768003 140768003 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003736.2 +1 reviewed p.E184D 0.001 72 0% 76 11.8% 0 - benign(0.003) tolerated(0.45) neutral(0.012) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHGC3 5098 genome.wustl.edu 37 5 140856619 140856619 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002588.2 +1 reviewed p.F312 0.759 56 0% 42 26.2% 33 30.3% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH12 51294 genome.wustl.edu 37 5 141325240 141325240 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016580.2 -1 reviewed p.F1087L 1.000 47 0% 35 14.3% 9 0% probably_damaging(0.995) deleterious(0.04) deleterious(0.806) NULL NR3C1 2908 genome.wustl.edu 37 5 142662143 142662143 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001024094.1 -1 reviewed p.S725Y 1.000 204 0% 184 14.1% 0 - probably_damaging(1) tolerated(0.14) deleterious(0.750) HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor NR3C1 2908 genome.wustl.edu 37 5 142779985 142779985 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001024094.1 -1 reviewed p.K140N 1.000 85 0% 74 18.9% 2 0% probably_damaging(0.984) tolerated(0.45) neutral(0.443) HMMPfam_GCR RBM27 54439 genome.wustl.edu 37 5 145651214 145651214 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018989.1 +1 validated p.E989* 1.000 166 0% 130 36.2% 3 0% - - - NULL SPINK5 11005 genome.wustl.edu 37 5 147503468 147503468 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127698.1 +1 reviewed p.R871* 1.000 201 0% 164 27.4% 0 - - - - HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors ADRB2 154 genome.wustl.edu 37 5 148207410 148207410 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000024.5 +1 reviewed p.L339R 0.999 120 0% 100 21% 3 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Family A G protein-coupled receptor-like ABLIM3 22885 genome.wustl.edu 37 5 148577948 148577948 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014945.2 +1 validated p.F106 0.800 50 0% 36 16.7% 2 50% - - - HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) AFAP1L1 134265 genome.wustl.edu 37 5 148712350 148712350 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152406.2 +1 validated p.L690 1.000 35 0% 28 39.3% 5 20% - - - NULL NDST1 3340 genome.wustl.edu 37 5 149927918 149927918 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001543.4 +1 validated p.E762K 1.000 29 0% 19 21.1% 34 5.8% benign(0.042) deleterious(0.01) neutral(0.408) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases FAT2 2196 genome.wustl.edu 37 5 150922621 150922621 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001447.2 -1 reviewed p.P2689 0.934 88 0% 97 20.6% 0 - - - - HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases FAT2 2196 genome.wustl.edu 37 5 150925305 150925305 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001447.2 -1 reviewed p.E1795* 0.976 81 0% 93 25.8% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT2 2196 genome.wustl.edu 37 5 150947261 150947261 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001447.2 -1 reviewed p.R411Q 0.028 133 0% 117 18.8% 0 - benign(0.148) tolerated(0.53) neutral(0.020) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like FAT2 2196 genome.wustl.edu 37 5 150947852 150947852 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001447.2 -1 reviewed p.R214Q 0.000 55 0% 42 14.3% 2 50% probably_damaging(0.997) tolerated(0.35) deleterious(0.487) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like G3BP1 10146 genome.wustl.edu 37 5 151170476 151170476 + Missense_Mutation SNP A A C rs61732687 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005754.2 +1 reviewed p.Q68H 0.998 158 0% 124 15.3% 110 13.6% benign(0.153) deleterious(0) neutral(0.458) HMMPfam_NTF2,superfamily_NTF2-like NMUR2 56923 genome.wustl.edu 37 5 151784412 151784412 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020167.4 -1 reviewed p.A88V 0.999 87 0% 83 31.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like MFAP3 4238 genome.wustl.edu 37 5 153432575 153432575 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005927.4 +1 validated p.R131C 0.005 226 0% 241 31.5% 17 52.9% probably_damaging(0.967) tolerated(0.17) neutral(0.468) HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin CYFIP2 26999 genome.wustl.edu 37 5 156741400 156741400 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001037332.2 +1 validated p.R387C 1.000 109 0% 68 26.5% 14 50% benign(0.085) deleterious(0.04) neutral(0.355) HMMPfam_FragX_IP FNDC9 408263 genome.wustl.edu 37 5 156770166 156770166 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001343.3 -1 validated p.V127I 0.916 62 0% 39 30.8% 0 - benign(0.017) tolerated(0.54) neutral(0.008) NULL EBF1 1879 genome.wustl.edu 37 5 158141167 158141167 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024007.3 -1 validated p.A383 0.177 238 0% 186 16.7% 2 0% - - - NULL CCNJL 79616 genome.wustl.edu 37 5 159682662 159682662 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024565.5 -1 validated p.A261T 1.000 69 0% 79 13.9% 1 0% probably_damaging(0.996) tolerated(0.14) deleterious(0.711) HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like MIR146A 406938 genome.wustl.edu 37 5 159912382 159912382 + RNA SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000385201 +1 known NULL 1.000 164 0% 147 26.5% 1 100% - - - - ATP10B 23120 genome.wustl.edu 37 5 160039884 160039884 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025153.2 -1 validated p.I901S 1.000 88 0% 52 23.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_HAD-like DOCK2 1794 genome.wustl.edu 37 5 169139167 169139167 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004946.2 +1 validated p.K533 0.603 238 0% 198 22.2% 6 0% - - - NULL KCNIP1 30820 genome.wustl.edu 37 5 170159896 170159896 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001034837.1 +1 reviewed p.D187 0.745 109 0% 82 9.8% 0 - - - - HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand C5orf25 375484 genome.wustl.edu 37 5 175716912 175716912 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000420396 +1 known p.P110S 0.436 64 0% 61 18% 2 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL C5orf25 375484 genome.wustl.edu 37 5 175722101 175722101 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198567.4 +1 validated p.E66D 1.000 141 0% 125 20% 1 0% probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL C5orf25 375484 genome.wustl.edu 37 5 175763732 175763732 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198567.4 +1 validated p.F293L 1.000 226 0% 191 21.5% 2 100% benign(0.287) tolerated(0.8) neutral(0.089) NULL FAM193B 54540 genome.wustl.edu 37 5 176959483 176959483 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019057.3 -1 validated p.F299 1.000 25 0% 24 33.3% 21 42.8% - - - NULL ZNF354B 117608 genome.wustl.edu 37 5 178310561 178310561 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_058230.2 +1 validated p.R370C 0.212 212 0.5% 206 22.8% 2 0% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF354C 30832 genome.wustl.edu 37 5 178506423 178506423 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014594.1 +1 provisional p.C330 0.362 143 0% 105 19% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 RASGEF1C 255426 genome.wustl.edu 37 5 179548099 179548099 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175062.3 -1 validated p.F255L 1.000 171 0% 113 31.9% 1 100% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF CNOT6 57472 genome.wustl.edu 37 5 179996326 179996326 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015455.3 +1 reviewed p.S415Y 1.000 104 0% 135 14.1% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Exo_endo_phos,superfamily_DNase I-like HUS1B 135458 genome.wustl.edu 37 6 656329 656329 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_148959.3 -1 reviewed p.N206H 0.317 84 0% 109 18.3% 0 - probably_damaging(0.991) tolerated(0.14) deleterious(0.694) HMMPfam_Hus1 BPHL 670 genome.wustl.edu 37 6 3127554 3127554 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004332.2 +1 reviewed p.R97Q 0.999 214 0.5% 179 26.3% 15 13.3% probably_damaging(1) tolerated(0.29) deleterious(0.529) HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases PXDC1 221749 genome.wustl.edu 37 6 3723874 3723874 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000380277 -1 known p.S173L 0.505 180 0% 129 10.9% 18 0% - - - NULL FAM217A 222826 genome.wustl.edu 37 6 4069218 4069218 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173563.1 -1 predicted p.E413 0.252 223 0% 208 14.4% 0 - - - - NULL RREB1 6239 genome.wustl.edu 37 6 7229303 7229303 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001003699.3 +1 reviewed p.A324V 1.000 71 0% 50 16% 23 30.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 CAGE1 285782 genome.wustl.edu 37 6 7373959 7373959 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_205864.2 -1 validated p.I229L 0.991 332 0% 288 18.8% 0 - benign(0.016) tolerated(0.38) neutral(0.018) NULL DSP 1832 genome.wustl.edu 37 6 7584869 7584869 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004415.2 +1 reviewed p.K2458N 0.965 170 0% 149 12.1% 29 37.9% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Plectin,HMMSmart_SM00250 EEF1E1 9521 genome.wustl.edu 37 6 8102693 8102693 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004280.4 -1 reviewed p.K21T 1.000 140 0% 79 27.8% 16 56.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TFAP2A 7020 genome.wustl.edu 37 6 10398754 10398754 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003220.2 -1 reviewed p.E404K 1.000 223 0% 162 27.8% 7 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_TF_AP-2 ELOVL2 54898 genome.wustl.edu 37 6 10990671 10990671 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017770.3 -1 validated p.F170L 1.000 156 0% 110 29.1% 0 - probably_damaging(0.977) deleterious(0) deleterious(0.863) HMMPfam_ELO NEDD9 4739 genome.wustl.edu 37 6 11191135 11191135 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142393.1 -1 validated p.V323I 0.603 59 0% 61 34.4% 11 63.6% benign(0.001) tolerated(0.45) neutral(0.012) NULL TBC1D7 51256 genome.wustl.edu 37 6 13316874 13316874 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143964.1 -1 validated p.D150N 1.000 261 0% 200 17% 59 30.5% probably_damaging(0.993) tolerated(0.06) deleterious(0.772) NULL TBC1D7 51256 genome.wustl.edu 37 6 13327103 13327103 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143964.1 -1 validated p.R10C 1.000 209 0.5% 224 20.5% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TRIM38 10475 genome.wustl.edu 37 6 25969632 25969632 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006355.2 +1 reviewed p.R164Q 0.021 135 0% 132 20.5% 6 33.3% benign(0.001) tolerated(0.58) neutral(0.005) NULL HFE 3077 genome.wustl.edu 37 6 26091204 26091204 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000410.3 +1 reviewed p.R71Q 0.001 253 0.4% 197 36% 7 14.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain HIST1H1D 3007 genome.wustl.edu 37 6 26234935 26234935 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005320.2 -1 reviewed p.K76R 1.000 133 0% 111 24.3% 0 - possibly_damaging(0.849) deleterious(0.04) deleterious(0.675) "HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain" BTN3A1 11119 genome.wustl.edu 37 6 26406403 26406403 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007048.5 +1 validated p.A118T 0.069 395 0% 283 12% 71 2.8% possibly_damaging(0.895) tolerated(0.09) deleterious(0.649) HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin BTN3A3 10384 genome.wustl.edu 37 6 26444392 26444392 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006994.4 +1 validated p.S98L 0.000 432 0% 344 15.1% 134 5.9% benign(0.016) tolerated(0.1) neutral(0.287) HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 ZNF322 79692 genome.wustl.edu 37 6 26637844 26637844 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024639.3 -1 validated p.R313I 1.000 444 0% 346 18.8% 1 0% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMSmart_ZnF_C2H2,superfamily_SSF57667 POM121L2 94026 genome.wustl.edu 37 6 27277041 27277041 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000444565 -1 known p.A970V 1.000 103 0% 85 11.8% 0 - probably_damaging(0.995) deleterious(0.03) deleterious(0.822) NULL ZNF192P1 651302 genome.wustl.edu 37 6 28134733 28134733 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145129.1 +1 provisional p.C133R 0.988 221 0% 168 19.6% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PGBD1 84547 genome.wustl.edu 37 6 28268962 28268962 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032507.3 +1 reviewed p.S444Y 1.000 288 0% 210 21% 0 - probably_damaging(0.991) tolerated(0.13) deleterious(0.697) NULL ZNF323 64288 genome.wustl.edu 37 6 28294230 28294230 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135215.1 -1 validated p.R312* 0.000 90 1.1% 68 27.9% 36 41.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 GPX6 257202 genome.wustl.edu 37 6 28473553 28473553 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182701.1 -1 reviewed p.V129A 1.000 162 0% 166 19.3% 0 - possibly_damaging(0.807) tolerated(0.58) neutral(0.309) HMMPfam_GSHPx,superfamily_Thioredoxin-like OR2J3 442186 genome.wustl.edu 37 6 29079757 29079757 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005216.2 +1 validated p.I30 0.958 20 0% 21 28.6% 0 - - - - superfamily_SSF81321 MOG 4340 genome.wustl.edu 37 6 29635428 29635428 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002433.4 +1 reviewed p.R187* 0.184 366 0% 335 10.7% 0 - - - - NULL HLA-A 3105 genome.wustl.edu 37 6 29910631 29910631 + Silent SNP C C T rs41548421 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002116.6 +1 reviewed p.F57 0.994 121 0% 101 10.9% 3547 5% - - - HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain AGER 177 genome.wustl.edu 37 6 32148963 32148963 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136.3 -1 reviewed p.S391L 0.939 192 0% 162 32.1% 2 50% benign(0.071) deleterious(0.04) neutral(0.354) NULL COL11A2 1302 genome.wustl.edu 37 6 33156927 33156927 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080680.2 -1 reviewed p.R91W 0.998 79 0% 81 32.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00282,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 LHFPL5 222662 genome.wustl.edu 37 6 35773618 35773618 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182548.3 +1 reviewed p.P57 0.154 161 0% 119 21.8% 0 - - - - HMMPfam_L_HGMIC_fpl SLC26A8 116369 genome.wustl.edu 37 6 35919090 35919090 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052961.2 -1 reviewed p.F774L 1.000 179 0% 129 35.7% 0 - probably_damaging(0.995) deleterious(0.04) deleterious(0.806) HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa SLC26A8 116369 genome.wustl.edu 37 6 35927285 35927285 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052961.2 -1 reviewed p.K605N 0.000 125 0% 140 33.6% 0 - benign(0.049) deleterious(0.01) neutral(0.409) HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa MAPK14 1432 genome.wustl.edu 37 6 36070398 36070398 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001315.2 +1 reviewed p.A271 1.000 363 0% 297 15.8% 14 7.1% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CPNE5 57699 genome.wustl.edu 37 6 36712049 36712049 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020939.1 -1 reviewed p.F495 0.978 103 0% 69 20.3% 43 0% - - - HMMSmart_VWA,superfamily_SSF53300 RNF8 9025 genome.wustl.edu 37 6 37336437 37336437 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003958.3 +1 reviewed p.N140D 0.009 82 0% 87 29.9% 2 50% benign(0.139) tolerated(0.32) neutral(0.036) NULL FTSJD2 23070 genome.wustl.edu 37 6 37440242 37440242 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015050.2 +1 validated p.S556 1.000 220 0% 193 31.1% 16 31.2% - - - NULL KCNK17 89822 genome.wustl.edu 37 6 39271749 39271749 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031460.3 -1 reviewed p.F224 0.999 63 0% 59 32.2% 1 0% - - - HMMPfam_Ion_trans_2,superfamily_SSF81324 TRERF1 55809 genome.wustl.edu 37 6 42224839 42224839 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033502.2 -1 reviewed p.R780C 1.000 262 0% 272 16.9% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ZNF318 24149 genome.wustl.edu 37 6 43323214 43323214 + Missense_Mutation SNP G G T rs145555771 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014345.2 -1 validated p.H620N 1.000 103 0% 74 18.9% 15 53.3% possibly_damaging(0.902) deleterious(0.02) deleterious(0.740) NULL LRRC73 221424 genome.wustl.edu 37 6 43475245 43475245 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001012974.1 -1 predicted p.R277W 0.001 41 0% 34 35.3% 11 27.2% possibly_damaging(0.94) deleterious(0.02) deleterious(0.768) superfamily_SSF52047 HSP90AB1 3326 genome.wustl.edu 37 6 44219245 44219245 + Missense_Mutation SNP G G A rs3811820 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007355.2 +1 provisional p.R405H 1.000 124 0% 104 26% 96 37.5% benign(0.039) deleterious(0) neutral(0.447) superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90 SLC35B2 347734 genome.wustl.edu 37 6 44223056 44223056 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178148.2 -1 validated p.L229R 1.000 78 0% 68 26.5% 72 19.4% probably_damaging(0.981) deleterious(0) deleterious(0.870) HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE TDRD6 221400 genome.wustl.edu 37 6 46658405 46658405 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001010870.2 +1 validated p.V847G 0.926 162 0% 163 17.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748 CRISP1 167 genome.wustl.edu 37 6 49803073 49803073 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001131.2 -1 reviewed p.L236I 0.000 333 0% 268 20.9% 0 - benign(0.005) tolerated(0.16) neutral(0.059) HMMPfam_Crisp TFAP2B 7021 genome.wustl.edu 37 6 50791385 50791385 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003221.3 +1 reviewed p.S116L 0.923 98 0% 87 18.4% 0 - benign(0.014) tolerated(0.29) neutral(0.030) NULL HMGCLL1 54511 genome.wustl.edu 37 6 55378918 55378918 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019036.2 -1 validated p.S187F 1.000 168 0% 169 11.2% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_HMGL-like,superfamily_Aldolase HMGCLL1 54511 genome.wustl.edu 37 6 55406884 55406884 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019036.2 -1 validated p.P85S 1.000 247 0% 258 26% 0 - possibly_damaging(0.523) deleterious(0) deleterious(0.621) superfamily_Aldolase PHF3 23469 genome.wustl.edu 37 6 64408382 64408382 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015153.2 +1 provisional p.K957Q 1.000 72 0% 101 12.9% 1 100% possibly_damaging(0.732) tolerated(0.09) deleterious(0.564) HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510 EYS 346007 genome.wustl.edu 37 6 64694374 64694374 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142800.1 -1 reviewed p.F2319L 0.938 196 0% 172 37.8% 0 - benign(0.014) - - superfamily_Concanavalin A-like lectins/glucanases EYS 346007 genome.wustl.edu 37 6 65300172 65300172 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142800.1 -1 reviewed p.S1863F 0.001 174 0% 150 10.7% 0 - possibly_damaging(0.819) - - superfamily_Concanavalin A-like lectins/glucanases EYS 346007 genome.wustl.edu 37 6 65300455 65300455 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142800.1 -1 reviewed p.D1769Y 0.090 124 0% 113 17.7% 0 - probably_damaging(0.976) - - superfamily_Concanavalin A-like lectins/glucanases BAI3 577 genome.wustl.edu 37 6 69349111 69349111 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001704.2 +1 reviewed p.E182* 1.000 48 0% 39 25.6% 0 - - - - NULL BAI3 577 genome.wustl.edu 37 6 69666668 69666668 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001704.2 +1 reviewed p.E498* 1.000 318 0% 195 16.4% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat KCNQ5 56479 genome.wustl.edu 37 6 73834236 73834236 + Splice_Site SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019842.3 +1 reviewed e9+1 1.000 348 0% 312 21.2% 0 - - - - - PHIP 55023 genome.wustl.edu 37 6 79655764 79655764 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017934.5 -1 validated p.K1528N 0.998 268 0% 241 11.2% 0 - probably_damaging(0.978) tolerated(0.15) deleterious(0.661) NULL IBTK 25998 genome.wustl.edu 37 6 82924199 82924199 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015525.2 -1 reviewed p.R650I 1.000 190 0% 191 32.5% 0 - benign(0.022) tolerated(0.14) neutral(0.251) HMMSmart_SM00225 IBTK 25998 genome.wustl.edu 37 6 82924473 82924473 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015525.2 -1 reviewed p.E559* 1.000 83 0% 88 11.4% 1 0% - - - superfamily_POZ domain,HMMPfam_BTB ME1 4199 genome.wustl.edu 37 6 83937158 83937158 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002395.4 -1 reviewed p.L391I 1.000 218 0% 188 20.2% 1 100% benign(0) tolerated(0.53) neutral(0.007) HMMPfam_Malic_M,superfamily_NAD(P)-bd HTR1E 3354 genome.wustl.edu 37 6 87726079 87726079 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000865.2 +1 validated p.L343I 0.998 149 1.3% 126 28.6% 0 - benign(0.094) tolerated(1) neutral(0.007) HMMPfam_7tm_1,superfamily_SSF81321 ZNF292 23036 genome.wustl.edu 37 6 87971192 87971192 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015021.1 +1 validated p.P2615 0.891 75 0% 71 19.7% 1 0% - - - NULL RARS2 57038 genome.wustl.edu 37 6 88224733 88224733 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020320.3 -1 reviewed p.L531R 1.000 213 0% 165 33.9% 25 44% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases MDN1 23195 genome.wustl.edu 37 6 90422329 90422329 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014611.1 -1 provisional p.L2465 1.000 84 0% 72 25% 1 100% - - - NULL MDN1 23195 genome.wustl.edu 37 6 90500104 90500104 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014611.1 -1 provisional p.S291Y 0.972 88 0% 69 27.5% 1 0% probably_damaging(0.996) tolerated(0.23) deleterious(0.503) NULL KLHL32 114792 genome.wustl.edu 37 6 97423913 97423913 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052904.3 +1 validated p.E22K 0.994 99 1% 74 13.5% 0 - benign(0) tolerated(0.44) neutral(0.013) superfamily_POZ domain FAXC 84553 genome.wustl.edu 37 6 99790775 99790775 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032511.2 -1 validated p.Q134P 1.000 181 0% 145 26.2% 0 - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) superfamily_Thioredoxin-like,HMMPfam_Tom37 ASCC3 10973 genome.wustl.edu 37 6 101248367 101248367 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006828.2 -1 validated p.K312N 1.000 150 0% 202 21.3% 0 - benign(0.025) tolerated(0.41) neutral(0.016) NULL ASCC3 10973 genome.wustl.edu 37 6 101296284 101296284 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006828.2 -1 validated p.E181K 1.000 94 0% 105 19% 1 0% possibly_damaging(0.512) tolerated(0.54) neutral(0.179) NULL PRDM1 639 genome.wustl.edu 37 6 106543511 106543511 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001198.3 +1 reviewed p.E105* 1.000 233 0% 230 17.8% 2 0% - - - HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199 AIM1 202 genome.wustl.edu 37 6 106960230 106960230 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001624.2 +1 validated p.S5F 0.010 21 0% 18 38.9% 3 33.3% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL SEC63 11231 genome.wustl.edu 37 6 108222714 108222714 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007214.4 -1 reviewed p.I406S 1.000 77 0% 85 11.8% 6 0% possibly_damaging(0.939) deleterious(0) deleterious(0.829) HMMPfam_Sec63,HMMSmart_SEC63 CDC40 51362 genome.wustl.edu 37 6 110531922 110531922 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015891.2 +1 reviewed p.E215* 1.000 323 0.3% 323 23.5% 4 75% - - - NULL METTL24 728464 genome.wustl.edu 37 6 110620291 110620291 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001123364.1 -1 inferred p.R207H 1.000 126 0% 106 23.6% 18 55.5% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL CDK19 23097 genome.wustl.edu 37 6 110942423 110942423 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015076.3 -1 reviewed p.A421T 0.003 37 0% 28 25% 1 100% possibly_damaging(0.753) deleterious(0.04) deleterious(0.625) NULL SLC16A10 117247 genome.wustl.edu 37 6 111540097 111540097 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018593.4 +1 validated p.C389* 0.998 570 0.2% 462 19.5% 3 0% - - - HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter REV3L 5980 genome.wustl.edu 37 6 111694238 111694238 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002912.3 -1 validated p.K1774Q 1.000 312 0% 317 23% 6 83.3% probably_damaging(0.954) deleterious(0) deleterious(0.842) superfamily_Ribonuclease H-like ROS1 6098 genome.wustl.edu 37 6 117714464 117714464 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002944.2 -1 reviewed p.E395D 0.958 225 0% 244 25.4% 0 - benign(0.002) tolerated(0.62) neutral(0.004) HMMSmart_LY,superfamily_SSF63825 ROS1 6098 genome.wustl.edu 37 6 117718123 117718123 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002944.2 -1 reviewed p.R245I 1.000 297 0% 249 28.5% 0 - possibly_damaging(0.66) tolerated(0.1) deleterious(0.519) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like DCBLD1 285761 genome.wustl.edu 37 6 117861899 117861899 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173674.1 +1 provisional p.R390S 1.000 150 0% 125 24% 10 70% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like HSF2 3298 genome.wustl.edu 37 6 122752604 122752604 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004506.3 +1 validated p.K420N 1.000 81 0% 90 36.7% 9 66.6% probably_damaging(1) tolerated(0.45) deleterious(0.512) HMMPfam_Vert_HS_TF HSF2 3298 genome.wustl.edu 37 6 122753190 122753190 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004506.3 +1 validated p.K479T 1.000 195 0% 156 20.5% 9 11.1% probably_damaging(0.958) tolerated(0.15) deleterious(0.643) HMMPfam_Vert_HS_TF NCOA7 135112 genome.wustl.edu 37 6 126210647 126210647 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181782.3 +1 validated p.D483Y 0.992 90 0% 53 28.3% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL LOC728666 728666 genome.wustl.edu 37 6 126965156 126965156 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_015645.3 +1 model NULL 1.000 177 0.6% 158 20.3% 0 - - - - - LAMA2 3908 genome.wustl.edu 37 6 129634144 129634144 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000426.3 +1 reviewed p.L1105I 0.047 185 0% 143 41.3% 0 - benign(0.008) tolerated(0.51) neutral(0.009) HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,superfamily_ConA_like_lec_gl,superfamily_SSF57196 LAMA2 3908 genome.wustl.edu 37 6 129637094 129637094 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000426.3 +1 reviewed p.E1308A 1.000 137 0% 139 18.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl,HMMSmart_LamB L3MBTL3 84456 genome.wustl.edu 37 6 130413942 130413942 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032438.1 +1 validated p.S524Y 1.000 275 0% 241 31.5% 2 0% benign(0.339) tolerated(0.09) neutral(0.403) HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT LOC285735 285735 genome.wustl.edu 37 6 133421232 133421232 + RNA SNP G G A rs140784247 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_026969.1 +1 predicted NULL 0.004 335 0% 314 28.7% 0 - - - - - EYA4 2070 genome.wustl.edu 37 6 133827283 133827283 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004100.4 +1 reviewed p.E411* 1.000 166 0% 203 20.7% 0 - - - - HMMPfam_Hydrolase SGK1 6446 genome.wustl.edu 37 6 134498828 134498828 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143677.1 -1 reviewed p.E45* 1.000 318 0.3% 323 18.9% 0 - - - - NULL AHI1 54806 genome.wustl.edu 37 6 135751034 135751034 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134830.1 -1 reviewed p.I826M 1.000 150 0% 165 19.4% 1 0% benign(0.252) tolerated(0.18) neutral(0.082) superfamily_WD40 repeat-like ECT2L 345930 genome.wustl.edu 37 6 139223694 139223694 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001077706.1 +1 validated p.E882G 0.933 236 0.4% 233 24.9% 2 50% probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_SSF50729 GPR126 57211 genome.wustl.edu 37 6 142723792 142723792 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198569.2 +1 reviewed p.L594V 0.398 134 0% 134 23.1% 0 - benign(0.138) deleterious(0.04) neutral(0.360) NULL HIVEP2 3097 genome.wustl.edu 37 6 143093879 143093879 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006734.3 -1 provisional p.S666Y 0.215 362 0% 323 20.4% 5 20% benign(0.055) deleterious(0.04) neutral(0.352) NULL FBXO30 84085 genome.wustl.edu 37 6 146126124 146126124 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032145.4 -1 reviewed p.M473T 1.000 93 0% 87 24.1% 6 16.6% benign(0.005) tolerated(0.96) - NULL SHPRH 257218 genome.wustl.edu 37 6 146242464 146242464 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042683.2 -1 validated p.R1287* 1.000 206 0% 189 16.9% 1 0% - - - NULL GRM1 2911 genome.wustl.edu 37 6 146708075 146708075 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000838.3 +1 reviewed p.K551T 1.000 185 0% 159 36.5% 0 - possibly_damaging(0.95) tolerated(0.17) neutral(0.453) HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2 ADGB 79747 genome.wustl.edu 37 6 147061711 147061711 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024694.3 +1 provisional p.S1002Y 0.486 324 0% 281 27.4% 0 - benign(0.379) deleterious(0.01) deleterious(0.526) NULL RAET1L 154064 genome.wustl.edu 37 6 150343281 150343281 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_130900.2 -1 validated p.L62I 0.002 287 0% 229 30.6% 2 0% probably_damaging(0.974) deleterious(0.02) deleterious(0.799) superfamily_MHC_I/II-like_Ag-recog PLEKHG1 57480 genome.wustl.edu 37 6 151055067 151055067 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001029884.1 +1 provisional p.E84K 0.019 38 0% 35 25.7% 14 35.7% benign(0.086) deleterious(0.01) neutral(0.412) NULL AKAP12 9590 genome.wustl.edu 37 6 151670763 151670763 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005100.3 +1 reviewed p.E413* 0.012 85 0% 66 34.8% 0 - - - - NULL SYNE1 23345 genome.wustl.edu 37 6 152462373 152462373 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182961.2 -1 reviewed p.F8404C 0.998 183 0% 181 18.8% 5 20% benign(0.257) deleterious(0.04) neutral(0.376) superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152501274 152501274 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182961.2 -1 reviewed p.K7819N 0.985 349 0% 284 20.4% 0 - benign(0.096) deleterious(0.02) neutral(0.390) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat SYNE1 23345 genome.wustl.edu 37 6 152546970 152546970 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182961.2 -1 reviewed p.E7079D 1.000 419 0% 428 32% 0 - benign(0.307) tolerated(0.54) neutral(0.103) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat FBXO5 26271 genome.wustl.edu 37 6 153296353 153296353 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012177.3 -1 reviewed p.F169 0.006 286 0% 283 17.7% 5 0% - - - NULL SCAF8 22828 genome.wustl.edu 37 6 155154410 155154410 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014892.3 +1 validated p.D1233Y 1.000 141 0% 112 16.1% 10 30% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL TIAM2 26230 genome.wustl.edu 37 6 155485575 155485575 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012454.3 +1 reviewed p.E685 0.998 64 0% 43 30.2% 1 0% - - - NULL TIAM2 26230 genome.wustl.edu 37 6 155574087 155574087 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012454.3 +1 reviewed p.S1375 0.001 195 0% 156 23.1% 0 - - - - HMMSmart_SM00233,superfamily_PH domain-like TFB1M 51106 genome.wustl.edu 37 6 155632387 155632387 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016020.2 -1 validated p.L74I 1.000 220 0% 164 20.1% 8 0% probably_damaging(0.966) tolerated(0.19) neutral(0.457) HMMPfam_RrnaAD,PatternScan_RRNA_A_DIMETH,HMMSmart_rADc,superfamily_SSF53335 SNX9 51429 genome.wustl.edu 37 6 158296104 158296104 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016224.3 +1 reviewed p.D66Y 0.999 371 0% 285 30.9% 12 25% possibly_damaging(0.507) deleterious(0.05) deleterious(0.515) NULL ACAT2 39 genome.wustl.edu 37 6 160197209 160197209 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005891.2 +1 reviewed p.F221C 1.000 176 0% 157 29.9% 24 50% probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_Thiolase_N,superfamily_Thiolase-like MAS1 4142 genome.wustl.edu 37 6 160328626 160328626 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002377.2 +1 reviewed p.K213 1.000 165 0% 130 13.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 MLLT4 4301 genome.wustl.edu 37 6 168271065 168271065 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000400825 +1 known p.E102* 1.000 165 0% 134 26.1% 1 0% - - - HMMPfam_RA,HMMSmart_SM00314 THBS2 7058 genome.wustl.edu 37 6 169620332 169620332 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003247.2 -1 reviewed p.E1158* 1.000 146 0% 93 23.7% 3 0% - - - HMMPfam_TSP_C,superfamily_ConA_like_lec_gl THBS2 7058 genome.wustl.edu 37 6 169621618 169621618 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003247.2 -1 reviewed p.R1093Q 1.000 97 0% 78 21.8% 11 9% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_TSP_C,superfamily_ConA_like_lec_gl DLL1 28514 genome.wustl.edu 37 6 170597466 170597466 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005618.3 -1 reviewed p.F177 0.957 41 0% 28 46.4% 5 20% - - - HMMPfam_DSL,HMMSmart_SM00051 INTS1 26173 genome.wustl.edu 37 7 1524964 1524964 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080453.2 -1 validated p.D1040N 1.000 34 0% 31 19.4% 130 7.6% benign(0.01) tolerated(0.47) neutral(0.011) NULL INTS1 26173 genome.wustl.edu 37 7 1542569 1542569 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080453.2 -1 validated p.S106L 0.986 138 0% 124 17.7% 27 18.5% probably_damaging(0.969) tolerated(0.17) deleterious(0.470) NULL IQCE 23288 genome.wustl.edu 37 7 2649781 2649781 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152558.3 +1 validated p.K691N 0.000 52 0% 26 15.4% 49 6.1% possibly_damaging(0.819) - - NULL CARD11 84433 genome.wustl.edu 37 7 2959068 2959068 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032415.3 -1 validated p.C816 0.994 43 0% 43 14% 25 0% - - - NULL EIF2AK1 27102 genome.wustl.edu 37 7 6066420 6066420 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014413.3 -1 reviewed p.S568* 0.093 149 0% 171 28.7% 43 4.6% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZNF12 7559 genome.wustl.edu 37 7 6730965 6730965 + Silent SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016265.3 -1 reviewed p.L536 0.000 105 0% 97 30.9% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF12 7559 genome.wustl.edu 37 7 6731238 6731238 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016265.3 -1 reviewed p.F445L 0.068 172 0% 180 25.6% 3 0% benign(0.003) tolerated(0.1) neutral(0.286) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ENSG00000248675 0 genome.wustl.edu 37 7 10491794 10491794 + RNA SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000510654 -1 known NULL 0.988 71 0% 48 27.1% 0 - - - - - THSD7A 221981 genome.wustl.edu 37 7 11446979 11446979 + Silent SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015204.2 -1 validated p.S1290 0.972 121 0% 112 15.2% 1 0% - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat VWDE 221806 genome.wustl.edu 37 7 12420147 12420147 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135924.1 -1 provisional p.E252* 1.000 81 0% 77 29.9% 0 - - - - NULL DGKB 1607 genome.wustl.edu 37 7 14378214 14378214 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004080.2 -1 reviewed p.R684Q 0.991 362 0% 291 19.9% 0 - benign(0.122) tolerated(0.61) neutral(0.014) HMMPfam_DAGK_acc,HMMSmart_SM00045 AGMO 392636 genome.wustl.edu 37 7 15405188 15405188 + Missense_Mutation SNP C C T rs181773805 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004320.1 -1 provisional p.R405Q 0.002 173 0% 160 21.2% 0 - probably_damaging(0.985) deleterious(0.04) deleterious(0.781) NULL ANKMY2 57037 genome.wustl.edu 37 7 16649278 16649278 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020319.2 -1 validated p.R287* 1.000 196 0% 206 25.7% 4 0% - - - NULL AHR 196 genome.wustl.edu 37 7 17379527 17379527 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001621.4 +1 validated p.S693Y 0.001 163 0% 131 12.2% 18 55.5% benign(0.047) deleterious(0.01) neutral(0.409) NULL SNX13 23161 genome.wustl.edu 37 7 17843046 17843046 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015132.4 -1 reviewed p.F741C 1.000 246 0% 215 35.3% 10 90% possibly_damaging(0.874) tolerated(0.18) neutral(0.396) NULL ABCB5 340273 genome.wustl.edu 37 7 20685505 20685505 + Splice_Site SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000404938 +1 known e7+2 1.000 125 0% 132 22.7% 0 - - - - - DNAH11 8701 genome.wustl.edu 37 7 21603904 21603904 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003777.3 +1 reviewed p.I361 0.085 266 0% 245 18% 0 - - - - HMMPfam_DHC_N1 DNAH11 8701 genome.wustl.edu 37 7 21641066 21641066 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003777.3 +1 reviewed p.E1160* 0.814 137 0% 141 18.4% 0 - - - - NULL DNAH11 8701 genome.wustl.edu 37 7 21654888 21654888 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003777.3 +1 reviewed p.R1337* 0.603 374 0% 332 17.8% 0 - - - - HMMPfam_DHC_N2 DNAH11 8701 genome.wustl.edu 37 7 21723441 21723441 + Missense_Mutation SNP C C T rs180897552 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003777.3 +1 reviewed p.R1841C 1.000 385 0% 318 31.4% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DNAH11 8701 genome.wustl.edu 37 7 21894064 21894064 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003777.3 +1 reviewed p.F3738L 1.000 189 0% 211 10.9% 1 0% possibly_damaging(0.95) deleterious(0.01) deleterious(0.799) NULL DNAH11 8701 genome.wustl.edu 37 7 21907547 21907547 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003777.3 +1 reviewed p.E3928K 0.990 163 0.6% 186 32.3% 1 100% benign(0.002) tolerated(0.3) neutral(0.029) HMMPfam_Dynein_heavy CDCA7L 55536 genome.wustl.edu 37 7 21945150 21945150 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018719.4 -1 validated p.R341* 0.970 125 0% 117 24.8% 16 0% - - - NULL FAM126A 84668 genome.wustl.edu 37 7 22985597 22985597 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032581.3 -1 reviewed p.E393* 1.000 119 0% 124 29.8% 0 - - - - NULL NUPL2 11097 genome.wustl.edu 37 7 23239982 23239982 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007342.2 +1 validated p.S297L 0.922 194 0.5% 174 29.9% 5 80% probably_damaging(0.957) tolerated(0.12) deleterious(0.661) NULL STK31 56164 genome.wustl.edu 37 7 23811782 23811782 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031414.3 +1 reviewed p.I617T 0.530 101 0% 110 21.8% 0 - benign(0) tolerated(1) - NULL CBX3 11335 genome.wustl.edu 37 7 26245991 26245991 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007276.3 +1 reviewed p.K10Q 1.000 184 0% 195 17.9% 15 46.6% benign(0.132) tolerated(0.07) neutral(0.330) NULL HOXA1 3198 genome.wustl.edu 37 7 27134375 27134375 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005522.4 -1 reviewed p.A231V 1.000 84 0% 83 28.9% 0 - benign(0.038) tolerated(0.1) neutral(0.288) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like ENSG00000248357 0 genome.wustl.edu 37 7 27498300 27498300 + RNA SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000506075 +1 novel NULL 1.000 191 0% 169 23.1% 6 0% - - - - CREB5 9586 genome.wustl.edu 37 7 28857778 28857778 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182898.2 +1 reviewed p.E449* 1.000 179 0% 169 28.4% 8 50% - - - NULL WIPF3 644150 genome.wustl.edu 37 7 29943971 29943971 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000242140 +1 known p.N474T 0.997 161 0% 174 21.8% 2 50% possibly_damaging(0.806) deleterious(0) deleterious(0.748) NULL BMPER 168667 genome.wustl.edu 37 7 33976927 33976927 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133468.3 +1 validated p.E82D 1.000 119 0% 90 22.2% 0 - possibly_damaging(0.45) deleterious(0) deleterious(0.592) HMMSmart_VWC,PatternScan_VWFC_1 TXNDC3 51314 genome.wustl.edu 37 7 37907312 37907312 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016616.4 +1 reviewed p.F210 0.998 218 0% 213 29.1% 1 100% - - - superfamily_NDK TXNDC3 51314 genome.wustl.edu 37 7 37924818 37924818 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016616.4 +1 reviewed p.R404I 0.002 256 0% 274 25.2% 0 - benign(0.233) deleterious(0.05) neutral(0.369) HMMSmart_NDK,superfamily_NDK TRGC2 6967 genome.wustl.edu 37 7 38289070 38289070 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000436911 -1 known p.R35I 0.965 397 0% 362 30.7% 0 - benign(0.095) deleterious(0.01) neutral(0.413) HMMSmart_SM00407,superfamily_Immunoglobulin AMPH 273 genome.wustl.edu 37 7 38505847 38505847 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001635.2 -1 reviewed p.R198* 1.000 136 0% 136 18.4% 0 - - - - HMMPfam_BAR,HMMSmart_SM00721 CDK13 8621 genome.wustl.edu 37 7 40117616 40117616 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003718.4 +1 reviewed p.G931 0.999 436 0% 341 19.6% 8 12.5% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase C7orf44 55744 genome.wustl.edu 37 7 43687217 43687217 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018224.2 -1 validated p.R11Q 0.162 58 0% 69 27.5% 33 63.6% benign(0) tolerated(0.36) neutral(0.020) NULL POLM 27434 genome.wustl.edu 37 7 44118368 44118368 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013284.2 -1 validated p.R229W 0.001 147 0% 114 22.8% 9 22.2% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_POLXc,superfamily_DNApol_B_N_like CAMK2B 816 genome.wustl.edu 37 7 44260222 44260222 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001220.4 -1 reviewed p.F587 0.996 36 0% 46 10.9% 4 0% - - - HMMPfam_CaMKII_AD,superfamily_SSF54427 NACAD 23148 genome.wustl.edu 37 7 45120514 45120514 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000490531 -1 known p.G1500D 0.007 59 0% 30 40% 4 50% - - - NULL ADCY1 107 genome.wustl.edu 37 7 45697445 45697445 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021116.2 +1 reviewed p.V423A 1.000 68 0% 45 15.6% 17 11.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1 ABCA13 154664 genome.wustl.edu 37 7 48311763 48311763 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152701.3 +1 reviewed p.L834V 0.056 35 0% 51 25.5% 0 - possibly_damaging(0.896) - - NULL ABCA13 154664 genome.wustl.edu 37 7 48559828 48559828 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000453246 +1 known p.A929T 0.000 185 0% 152 21.1% 1 0% - - - NULL ZPBP 11055 genome.wustl.edu 37 7 50070739 50070739 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007009.2 -1 validated p.V219I 0.998 100 0% 115 34.8% 0 - possibly_damaging(0.937) tolerated(0.06) deleterious(0.706) HMMPfam_Sp38 IKZF1 10320 genome.wustl.edu 37 7 50459558 50459558 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000331340 +1 known p.L283I 1.000 106 0% 91 23.1% 5 0% benign(0) tolerated(0.36) neutral(0.020) NULL FIGNL1 63979 genome.wustl.edu 37 7 50513485 50513485 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042762.1 -1 validated p.E501K 1.000 84 0% 71 29.6% 7 42.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases ZNF479 90827 genome.wustl.edu 37 7 57188088 57188088 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033273.1 -1 provisional p.R345I 0.986 58 0% 64 12.5% 0 - benign(0.018) tolerated(0.28) neutral(0.032) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF479 90827 genome.wustl.edu 37 7 57188349 57188349 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033273.1 -1 provisional p.R258I 0.035 134 0% 122 19.7% 0 - benign(0.009) tolerated(0.15) neutral(0.241) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF716 441234 genome.wustl.edu 37 7 57529030 57529030 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000420713 +1 known p.R288I 0.502 100 0% 90 30% 0 - benign(0.018) tolerated(0.27) neutral(0.034) superfamily_C2H2 and C2HC zinc fingers ZNF716 441234 genome.wustl.edu 37 7 57529114 57529114 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000420713 +1 known p.R316I 0.995 105 0% 87 18.4% 0 - possibly_damaging(0.662) tolerated(0.31) neutral(0.261) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF679 168417 genome.wustl.edu 37 7 63726400 63726400 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153363.2 +1 validated p.S130I 0.001 379 0% 321 33.3% 0 - benign(0.001) tolerated(0.18) neutral(0.056) NULL ZNF679 168417 genome.wustl.edu 37 7 63726401 63726401 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153363.2 +1 validated p.S130R 0.000 376 0% 318 33.6% 0 - benign(0.001) tolerated(0.24) neutral(0.037) NULL ZNF680 340252 genome.wustl.edu 37 7 63982692 63982692 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178558.4 -1 validated p.R147I 0.001 182 0% 222 15.8% 1 0% benign(0.002) tolerated(0.57) neutral(0.006) NULL ZNF107 51427 genome.wustl.edu 37 7 64167137 64167137 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001013746.1 +1 validated p.R152I 0.210 35 0% 40 47.5% 0 - benign(0.207) tolerated(0.14) neutral(0.270) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF138 7697 genome.wustl.edu 37 7 64292353 64292353 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006524.2 +1 validated p.R188C 0.975 63 0% 78 11.5% 2 0% benign(0) deleterious(0.02) neutral(0.383) superfamily_SSF57667 ZNF117 51351 genome.wustl.edu 37 7 64439395 64439395 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015852.3 -1 validated p.R185I 0.908 79 0% 76 11.8% 1 0% benign(0.01) tolerated(0.2) neutral(0.050) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF117 51351 genome.wustl.edu 37 7 64439479 64439479 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015852.3 -1 validated p.R157I 0.857 117 0% 122 36.1% 0 - benign(0.26) tolerated(0.07) neutral(0.346) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ENSG00000245043 0 genome.wustl.edu 37 7 64534163 64534163 + RNA SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000501153 -1 known NULL 1.000 25 0% 19 47.4% 15 0% - - - - ZNF92 168374 genome.wustl.edu 37 7 64863946 64863946 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152626.2 +1 validated p.H307N 1.000 55 0% 65 21.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers WBSCR16 81554 genome.wustl.edu 37 7 74470140 74470140 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030798.3 -1 reviewed p.K367Q 1.000 117 0% 116 19% 25 32% possibly_damaging(0.94) tolerated(0.35) neutral(0.406) superfamily_RCC1/BLIP-II CCDC146 57639 genome.wustl.edu 37 7 76891535 76891535 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020879.2 +1 validated p.R362* 0.991 121 0% 109 16.5% 2 0% - - - NULL CCDC146 57639 genome.wustl.edu 37 7 76908289 76908289 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020879.2 +1 validated p.R522Q 0.919 141 0.7% 122 27.9% 0 - possibly_damaging(0.645) deleterious(0.02) deleterious(0.609) NULL SEMA3C 10512 genome.wustl.edu 37 7 80394557 80394557 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006379.2 -1 validated p.R453W 1.000 122 0% 95 25.3% 17 29.4% possibly_damaging(0.94) deleterious(0.02) deleterious(0.768) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema CACNA2D1 781 genome.wustl.edu 37 7 81624206 81624206 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000722.2 -1 reviewed p.T571N 1.000 236 0% 254 18.1% 0 - probably_damaging(0.965) deleterious(0.01) deleterious(0.812) HMMPfam_VGCC_alpha2 CACNA2D1 781 genome.wustl.edu 37 7 81624252 81624252 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000722.2 -1 reviewed p.R556* 1.000 273 0% 264 13.3% 0 - - - - HMMPfam_VGCC_alpha2 PCLO 27445 genome.wustl.edu 37 7 82584816 82584816 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033026.5 -1 validated p.R1818I 1.000 448 0% 433 19.6% 0 - probably_damaging(0.995) - - NULL SEMA3A 10371 genome.wustl.edu 37 7 83634804 83634804 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006080.2 -1 reviewed p.R404I 1.000 318 0% 284 19% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema ABCB1 5243 genome.wustl.edu 37 7 87173568 87173568 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000927.3 -1 reviewed p.S696 0.985 218 0% 205 28.8% 0 - - - - superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain SRI 6717 genome.wustl.edu 37 7 87838684 87838684 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003130.2 -1 validated p.A161T 0.996 244 0% 198 20.7% 317 35.6% benign(0.038) tolerated(0.69) neutral(0.004) superfamily_EF-hand AKAP9 10142 genome.wustl.edu 37 7 91632523 91632523 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005751.4 +1 reviewed p.E1098* 1.000 85 0% 109 15.6% 0 - - - - NULL ENSG00000240720 0 genome.wustl.edu 37 7 91794287 91794287 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000430130 -1 known p.R77I 0.000 242 0% 246 19.5% 0 - possibly_damaging(0.888) deleterious(0.04) deleterious(0.696) NULL ERVW-1 30816 genome.wustl.edu 37 7 92098764 92098764 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014590.3 -1 reviewed p.S311Y 0.107 451 0% 377 24.7% 0 - possibly_damaging(0.517) tolerated(1) neutral(0.174) HMMPfam_TLV_coat SAMD9 54809 genome.wustl.edu 37 7 92733543 92733543 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017654.2 -1 validated p.S623Y 0.998 212 0% 185 34.1% 1 100% probably_damaging(0.981) deleterious(0.01) deleterious(0.831) NULL SAMD9L 219285 genome.wustl.edu 37 7 92762802 92762802 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152703.2 -1 validated p.R828Q 0.001 131 0% 96 30.2% 0 - probably_damaging(0.999) tolerated(0.2) deleterious(0.539) NULL SAMD9L 219285 genome.wustl.edu 37 7 92764297 92764297 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152703.2 -1 validated p.D330Y 0.000 143 0% 139 35.3% 2 50% benign(0.156) tolerated(0.06) neutral(0.337) NULL PPP1R9A 55607 genome.wustl.edu 37 7 94539683 94539683 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017650.2 +1 validated p.K86N 0.988 106 0% 91 26.4% 0 - unknown(0) tolerated(0.29) - NULL PON1 5444 genome.wustl.edu 37 7 94940808 94940808 + Missense_Mutation SNP T T G rs112078575 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000446.5 -1 reviewed p.K151T 0.999 405 0% 423 19.4% 0 - benign(0.091) tolerated(0.51) neutral(0.015) superfamily_Calcium-dependent phosphotriesterase PON3 5446 genome.wustl.edu 37 7 95001491 95001491 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000940.2 -1 reviewed p.D121N 0.987 280 0% 250 30.8% 0 - probably_damaging(0.969) tolerated(0.12) deleterious(0.672) superfamily_Calcium-dependent phosphotriesterase DYNC1I1 1780 genome.wustl.edu 37 7 95726852 95726852 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004411.4 +1 validated p.R629C 0.998 206 0% 162 20.4% 1 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL KPNA7 402569 genome.wustl.edu 37 7 98775681 98775681 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145715.1 -1 validated p.E442D 0.995 181 0% 161 35.4% 1 100% benign(0) tolerated(0.28) neutral(0.032) superfamily_ARM-type_fold KPNA7 402569 genome.wustl.edu 37 7 98779667 98779667 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145715.1 -1 validated p.E386* 1.000 68 0% 64 26.6% 0 - - - - HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold ZAN 7455 genome.wustl.edu 37 7 100366313 100366313 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003386.1 +1 reviewed p.A1708T 0.006 58 0% 45 37.8% 0 - possibly_damaging(0.911) deleterious(0.03) deleterious(0.728) NULL MUC12 10071 genome.wustl.edu 37 7 100634707 100634707 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000379442 +1 known p.S431L 0.006 353 0% 270 18.9% 0 - benign(0.29) - - NULL MUC17 140453 genome.wustl.edu 37 7 100685796 100685796 + Missense_Mutation SNP C C T rs144234547 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040105.1 +1 provisional p.P3700L 0.000 171 0% 121 17.4% 0 - possibly_damaging(0.544) - - NULL MUC17 140453 genome.wustl.edu 37 7 100695125 100695125 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040105.1 +1 provisional p.V4329I 0.003 89 0% 78 29.5% 0 - unknown(0) - - NULL PSMC2 5701 genome.wustl.edu 37 7 103004748 103004748 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002803.2 +1 reviewed p.V250 0.970 140 0% 129 16.3% 49 4% - - - HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases RELN 5649 genome.wustl.edu 37 7 103163950 103163950 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005045.3 -1 reviewed p.Q2460K 1.000 122 0% 121 20.7% 5 20% probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL RELN 5649 genome.wustl.edu 37 7 103175899 103175899 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005045.3 -1 reviewed p.L2405 0.371 118 0% 121 28.1% 3 33.3% - - - NULL RELN 5649 genome.wustl.edu 37 7 103417060 103417060 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005045.3 -1 reviewed p.H163R 1.000 233 0% 201 15.9% 0 - benign(0.037) tolerated(0.33) neutral(0.026) HMMPfam_Reeler MLL5 55904 genome.wustl.edu 37 7 104752971 104752971 + Missense_Mutation SNP C C G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018682.3 +1 reviewed p.L1590V 1.000 261 0% 192 28.6% 72 37.5% benign(0.388) deleterious(0) deleterious(0.569) NULL ATXN7L1 222255 genome.wustl.edu 37 7 105260694 105260694 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000418537 -1 known p.S302L 0.954 233 0% 214 24.8% 9 55.5% - - - NULL PRKAR2B 5577 genome.wustl.edu 37 7 106797673 106797673 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002736.2 +1 reviewed p.R343* 0.887 224 0% 173 30.1% 1 0% - - - HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding HBP1 26959 genome.wustl.edu 37 7 106822967 106822967 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012257.3 +1 validated p.E107* 1.000 78 0% 57 26.3% 52 1.9% - - - NULL LRRN3 54674 genome.wustl.edu 37 7 110763655 110763655 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099658.1 +1 validated p.R276Q 1.000 28 0% 40 22.5% 0 - benign(0.009) tolerated(0.73) neutral(0.002) HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like ZNF277 11179 genome.wustl.edu 37 7 111970282 111970282 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000450657 +1 known p.S271Y 0.000 159 0% 146 32.9% 0 - unknown(0) - - NULL IFRD1 3475 genome.wustl.edu 37 7 112101963 112101963 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001007245.1 +1 validated p.D204Y 1.000 168 0% 199 12.6% 15 13.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_IFRD,superfamily_ARM repeat IFRD1 3475 genome.wustl.edu 37 7 112112911 112112911 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001007245.1 +1 validated p.E421K 1.000 264 0.4% 213 22.1% 11 18.1% benign(0.01) deleterious(0) neutral(0.445) HMMPfam_IFRD_C FOXP2 93986 genome.wustl.edu 37 7 114303569 114303569 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_148898.2 +1 reviewed p.L637 1.000 190 0% 257 18.3% 0 - - - - HMMPfam_Fork_head MET 4233 genome.wustl.edu 37 7 116340162 116340162 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127500.1 +1 reviewed p.L342I 1.000 69 0% 68 17.6% 5 60% benign(0.084) deleterious(0.01) neutral(0.412) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema CTTNBP2 83992 genome.wustl.edu 37 7 117431580 117431580 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033427.2 -1 reviewed p.S557Y 1.000 278 0% 245 19.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CortBP2 WNT16 51384 genome.wustl.edu 37 7 120971999 120971999 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_057168.1 +1 reviewed p.N205S 1.000 61 0% 51 31.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_wnt,HMMSmart_SM00097 SLC13A1 6561 genome.wustl.edu 37 7 122757604 122757604 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022444.3 -1 validated p.S524* 1.000 249 0% 226 27.4% 0 - - - - HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE NDUFA5 4698 genome.wustl.edu 37 7 123197308 123197308 + Silent SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000340034 -1 known p.P72 0.000 41 0% 41 12.2% 0 - - - - NULL ASB15 142685 genome.wustl.edu 37 7 123257785 123257785 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080928.3 +1 validated p.L149M 1.000 86 0% 99 30.3% 0 - probably_damaging(0.999) tolerated(0.12) deleterious(0.751) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat HYAL4 23553 genome.wustl.edu 37 7 123508855 123508855 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012269.2 +1 reviewed p.K176N 0.010 74 0% 81 19.8% 0 - benign(0.002) tolerated(0.3) neutral(0.029) HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat GCC1 79571 genome.wustl.edu 37 7 127222310 127222310 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024523.5 -1 reviewed p.R696C 0.044 216 0% 155 21.3% 52 40.3% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL CPA1 1357 genome.wustl.edu 37 7 130023271 130023271 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001868.2 +1 reviewed p.D175N 1.000 94 0% 79 25.3% 0 - possibly_damaging(0.947) tolerated(0.06) deleterious(0.713) HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,PatternScan_CARBOXYPEPT_ZN_1,superfamily_SSF53187 PLXNA4 91584 genome.wustl.edu 37 7 131844295 131844295 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020911.1 -1 validated p.L1533M 1.000 254 0% 183 27.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl PLXNA4 91584 genome.wustl.edu 37 7 132193081 132193081 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020911.1 -1 validated p.E124D 1.000 47 2.1% 27 18.5% 0 - benign(0) tolerated(0.63) neutral(0.004) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain CHCHD3 54927 genome.wustl.edu 37 7 132481210 132481210 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017812.2 -1 provisional p.A218V 1.000 221 0% 156 26.3% 30 10% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CHCHD3 54927 genome.wustl.edu 37 7 132709325 132709325 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017812.2 -1 provisional p.E78* 1.000 215 0% 231 14.7% 7 14.2% - - - HMMPfam_DUF737 AGBL3 340351 genome.wustl.edu 37 7 134678411 134678411 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178563.3 +1 provisional p.E98* 1.000 241 0% 197 37.1% 1 0% - - - NULL AKR1D1 6718 genome.wustl.edu 37 7 137791397 137791397 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005989.2 +1 validated p.F208C 1.000 200 0% 172 32% 0 - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red SVOPL 136306 genome.wustl.edu 37 7 138341226 138341226 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001139456.1 -1 validated p.T167 0.917 168 0% 161 41.6% 0 - - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter ZC3HAV1 56829 genome.wustl.edu 37 7 138774488 138774488 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020119.3 -1 reviewed p.S109Y 1.000 219 0% 219 11.9% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PARP12 64761 genome.wustl.edu 37 7 139724636 139724636 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022750.2 -1 provisional p.S610 0.000 40 0% 32 28.1% 239 44.3% - - - HMMPfam_PARP,superfamily_ADP-ribosylation JHDM1D 80853 genome.wustl.edu 37 7 139801846 139801846 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030647.1 -1 validated p.R515* 1.000 246 0% 191 35.1% 4 0% - - - NULL BRAF 673 genome.wustl.edu 37 7 140500260 140500260 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004333.4 -1 reviewed p.F294L 1.000 114 0% 90 12.2% 3 100% benign(0.205) tolerated(0.68) neutral(0.022) NULL BRAF 673 genome.wustl.edu 37 7 140501260 140501260 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004333.4 -1 reviewed p.R271H 1.000 136 0% 132 36.4% 2 50% benign(0.073) tolerated(0.52) neutral(0.014) HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain AGK 55750 genome.wustl.edu 37 7 141315346 141315346 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018238.3 +1 validated p.E167K 0.518 341 0% 321 21.2% 13 7.6% benign(0.122) tolerated(0.55) neutral(0.017) HMMPfam_DAGK_cat,HMMSmart_SM00046 MGAM 8972 genome.wustl.edu 37 7 141719073 141719073 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004668.2 +1 reviewed p.K134N 0.988 124 0% 97 28.9% 0 - benign(0) tolerated(0.5) neutral(0.010) NULL TRBV4-1 28617 genome.wustl.edu 37 7 142013362 142013362 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390357 +1 known p.L73I 0.000 172 0% 145 22.8% 0 - benign(0.224) tolerated(0.29) neutral(0.051) HMMPfam_V-set,superfamily_Immunoglobulin TRBV6-1 28606 genome.wustl.edu 37 7 142028546 142028546 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390353 +1 known p.S94P 0.000 157 0% 125 24.8% 3 0% benign(0) tolerated(1) - HMMPfam_V-set,superfamily_SSF48726 TRBV6-5 28602 genome.wustl.edu 37 7 142180920 142180920 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390368 -1 known p.L11V 0.000 152 0.7% 114 16.7% 5 0% benign(0.069) tolerated(0.08) neutral(0.304) NULL TRBC2 28638 genome.wustl.edu 37 7 142499083 142499083 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000466254 +1 known p.S120L 0.002 49 0% 34 29.4% 135 0% - - - superfamily_Immunoglobulin KEL 3792 genome.wustl.edu 37 7 142643301 142643301 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000420.2 -1 reviewed p.R436Q 0.063 53 0% 33 18.2% 0 - benign(0.001) tolerated(0.13) neutral(0.253) "HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain" TAS2R39 259285 genome.wustl.edu 37 7 142881347 142881347 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_176881.2 +1 provisional p.F279C 0.004 256 0% 190 17.4% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_TAS2R,superfamily_SSF81321 CLCN1 1180 genome.wustl.edu 37 7 143039081 143039081 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000083.2 +1 reviewed p.E548K 1.000 185 0% 147 21.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel OR2F1 26211 genome.wustl.edu 37 7 143657885 143657885 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012369.2 +1 provisional p.F274L 0.000 298 0% 212 20.8% 0 - benign(0) tolerated(0.39) neutral(0.016) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CNTNAP2 26047 genome.wustl.edu 37 7 146997332 146997332 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014141.5 +1 reviewed p.R483Q 0.998 205 0% 168 22.6% 0 - probably_damaging(1) tolerated(0.63) deleterious(0.503) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 CUL1 8454 genome.wustl.edu 37 7 148495742 148495742 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003592.2 +1 validated p.I703 0.806 381 0.3% 302 33.4% 22 36.3% - - - "HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain" ZNF282 8427 genome.wustl.edu 37 7 148903869 148903869 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003575.2 +1 validated p.Y223D 1.000 228 0% 175 26.3% 12 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box SSPO 23145 genome.wustl.edu 37 7 149515780 149515780 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000378016 +1 known p.R3894I 0.000 19 0% 19 36.8% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat SSPO 23145 genome.wustl.edu 37 7 149519212 149519212 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000378016 +1 known p.A4339V 0.003 27 0% 27 44.4% 0 - - - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat SMARCD3 6604 genome.wustl.edu 37 7 150939683 150939683 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001003801.1 -1 reviewed p.R155W 1.000 70 0% 58 15.5% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PRKAG2 51422 genome.wustl.edu 37 7 151483560 151483560 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016203.3 -1 reviewed p.R61Q 0.915 63 0% 37 40.5% 0 - benign(0.066) deleterious(0) neutral(0.449) NULL GALNTL5 168391 genome.wustl.edu 37 7 151680204 151680204 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145292.3 +1 validated p.E168* 0.993 155 0% 124 20.2% 0 - - - - HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases MLL3 58508 genome.wustl.edu 37 7 151859763 151859763 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000360104 -1 known p.D1139N 0.000 225 0% 204 10.3% 3 0% - - - NULL MLL3 58508 genome.wustl.edu 37 7 151902253 151902253 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_170606.2 -1 reviewed p.R1300K 1.000 381 0% 362 20.4% 1 0% probably_damaging(0.996) - - NULL DPP6 1804 genome.wustl.edu 37 7 154561155 154561155 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000377770 +1 known p.H304 1.000 102 0% 89 37.1% 1 0% - - - HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain HTR5A 3361 genome.wustl.edu 37 7 154875950 154875950 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024012.2 +1 reviewed p.R276Q 1.000 153 0% 122 32% 0 - probably_damaging(1) tolerated(0.13) deleterious(0.752) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like RBM33 155435 genome.wustl.edu 37 7 155499605 155499605 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_053043.2 +1 validated p.R264Q 0.998 57 0% 55 14.5% 11 36.3% unknown(0) deleterious(0) - NULL UBE3C 9690 genome.wustl.edu 37 7 157046990 157046990 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014671.2 +1 validated p.F979C 1.000 247 0% 193 23.8% 6 33.3% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain MIR595 693180 genome.wustl.edu 37 7 158325416 158325416 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000384905 -1 known NULL 0.000 119 0% 101 14.9% 0 - - - - - CSMD1 64478 genome.wustl.edu 37 8 2855536 2855536 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033225.5 -1 validated p.R2793* 0.521 54 0% 31 35.5% 0 - - - - superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 3015436 3015436 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033225.5 -1 validated p.P1967L 1.000 117 0% 86 26.7% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD1 64478 genome.wustl.edu 37 8 3076825 3076825 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033225.5 -1 validated p.R1543W 1.000 133 0% 98 25.5% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD1 64478 genome.wustl.edu 37 8 3256976 3256976 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033225.5 -1 validated p.S782Y 0.998 233 0.4% 239 31% 0 - probably_damaging(0.99) deleterious(0.01) deleterious(0.847) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain CSMD1 64478 genome.wustl.edu 37 8 3351157 3351157 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033225.5 -1 validated p.S480L 0.993 165 0.6% 127 27.6% 0 - benign(0.009) tolerated(0.06) neutral(0.323) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain PSD3 23362 genome.wustl.edu 37 8 18490285 18490285 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015310.3 -1 validated p.E750* 0.999 390 0% 351 20.2% 0 - - - - NULL LZTS1 11178 genome.wustl.edu 37 8 20112506 20112506 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021020.2 -1 reviewed p.E63K 1.000 110 0% 93 23.7% 0 - probably_damaging(0.996) tolerated(0.34) deleterious(0.485) NULL NEFL 4747 genome.wustl.edu 37 8 24813273 24813273 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000221169 -1 known p.D253N 1.000 85 0% 56 37.5% 0 - - - - HMMPfam_Filament DOCK5 80005 genome.wustl.edu 37 8 25156478 25156478 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024940.6 +1 validated p.D209N 1.000 217 0% 152 25% 6 50% benign(0.067) tolerated(0.34) neutral(0.028) NULL INTS9 55756 genome.wustl.edu 37 8 28669960 28669960 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018250.3 -1 reviewed p.Q210K 1.000 88 0% 85 45.9% 9 55.5% benign(0.001) tolerated(1) - NULL HMBOX1 79618 genome.wustl.edu 37 8 28837637 28837637 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135726.1 +1 validated p.R184W 1.000 420 0% 328 24.7% 1 0% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) superfamily_lambda repressor-like DNA-binding domains TEX15 56154 genome.wustl.edu 37 8 30700931 30700931 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031271.3 -1 validated p.F1868C 1.000 146 0% 155 17.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL TEX15 56154 genome.wustl.edu 37 8 30703790 30703790 + Missense_Mutation SNP C C A rs183773900 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031271.3 -1 validated p.R915I 0.920 163 0% 185 11.9% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL UNC5D 137970 genome.wustl.edu 37 8 35588575 35588575 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080872.2 +1 validated p.S576Y 0.999 235 0% 222 26.1% 0 - probably_damaging(0.989) tolerated(1) neutral(0.440) HMMPfam_ZU5,HMMSmart_SM00218 TACC1 6867 genome.wustl.edu 37 8 38677206 38677206 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006283.2 +1 reviewed p.I148 0.001 105 0% 83 20.5% 0 - - - - NULL ADAM18 8749 genome.wustl.edu 37 8 39486896 39486896 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014237.1 +1 reviewed p.K176Q 0.000 137 0% 165 17% 0 - - - - NULL IDO1 3620 genome.wustl.edu 37 8 39782262 39782262 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002164.4 +1 validated p.F226 0.998 448 0% 428 29.9% 81 45.6% - - - HMMPfam_IDO GINS4 84296 genome.wustl.edu 37 8 41399360 41399360 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032336.2 +1 validated p.L173 1.000 307 0% 278 22.3% 9 44.4% - - - HMMPfam_Sld5 ANK1 286 genome.wustl.edu 37 8 41557959 41557959 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142446.1 -1 reviewed p.I858M 0.999 323 0% 258 12.8% 0 - benign(0.123) tolerated(0.61) neutral(0.014) superfamily_ANK CHRNB3 1142 genome.wustl.edu 37 8 42585836 42585836 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000749.3 +1 validated p.L117I 1.000 175 0% 197 39.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like CHRNB3 1142 genome.wustl.edu 37 8 42587226 42587226 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000749.3 +1 validated p.S259L 1.000 179 0% 160 18.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore HGSNAT 138050 genome.wustl.edu 37 8 43013752 43013752 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152419.2 +1 reviewed p.S90N 0.017 216 0% 178 28.1% 8 50% possibly_damaging(0.889) tolerated(0.08) deleterious(0.649) NULL LOC100287980 100287980 genome.wustl.edu 37 8 48001307 48001307 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002342844.1 -1 model p.K204N 0.237 43 0% 47 27.7% 0 - - - - NULL PXDNL 137902 genome.wustl.edu 37 8 52252308 52252308 + Missense_Mutation SNP T T A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144651.4 -1 validated p.Q1341L 0.000 267 0% 288 24.3% 0 - benign(0.001) tolerated(0.29) neutral(0.029) NULL RB1CC1 9821 genome.wustl.edu 37 8 53558288 53558288 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014781.4 -1 reviewed p.R1321* 0.991 112 0% 138 23.2% 2 0% - - - NULL ATP6V1H 51606 genome.wustl.edu 37 8 54727287 54727287 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015941.2 -1 reviewed p.E154* 1.000 161 0.6% 227 20.3% 28 3.5% - - - HMMPfam_V-ATPase_H,superfamily_ARM repeat TCEA1 6917 genome.wustl.edu 37 8 54896935 54896935 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006756.2 -1 validated p.R222S 1.000 333 0% 339 29.2% 15 26.6% benign(0) tolerated(0.74) neutral(0.002) HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510 RP1 6101 genome.wustl.edu 37 8 55538707 55538707 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006269.1 +1 reviewed p.K755N 0.907 17 0% 30 20% 0 - probably_damaging(0.957) deleterious(0) deleterious(0.845) NULL UBXN2B 137886 genome.wustl.edu 37 8 59343194 59343194 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001077619.1 +1 validated p.E102G 1.000 140 0% 118 28% 6 50% possibly_damaging(0.786) tolerated(0.12) deleterious(0.555) NULL CHD7 55636 genome.wustl.edu 37 8 61750316 61750316 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017780.2 +1 reviewed p.F1425 0.981 169 0% 152 36.8% 3 33.3% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases ARFGEF1 10565 genome.wustl.edu 37 8 68170430 68170430 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006421.3 -1 reviewed p.F777 1.000 183 0.5% 165 29.7% 2 50% - - - HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold CPA6 57094 genome.wustl.edu 37 8 68334862 68334862 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020361.4 -1 validated p.F397 1.000 249 0% 248 14.9% 0 - - - - HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases EYA1 2138 genome.wustl.edu 37 8 72123486 72123486 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000503.4 -1 reviewed p.E535* 1.000 424 0% 347 21.3% 1 0% - - - HMMPfam_Hydrolase TRPA1 8989 genome.wustl.edu 37 8 72946550 72946550 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007332.2 -1 reviewed p.S873Y 0.710 135 0% 144 23.6% 0 - possibly_damaging(0.574) deleterious(0.02) deleterious(0.580) HMMPfam_Ion_trans LOC392232 392232 genome.wustl.edu 37 8 73140363 73140363 + Splice_Site SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_037363.2 -1 model NULL 1.000 66 0% 54 20.4% 0 - - - - - KCNB2 9312 genome.wustl.edu 37 8 73849914 73849914 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004770.2 +1 reviewed p.A775V 0.001 51 0% 49 20.4% 0 - benign(0) tolerated(0.18) neutral(0.056) NULL GDAP1 54332 genome.wustl.edu 37 8 75276516 75276516 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018972.2 +1 reviewed p.G331R 1.000 271 0% 200 15% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) NULL ZFHX4 79776 genome.wustl.edu 37 8 77617403 77617403 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024721.4 +1 validated p.F360 1.000 240 0% 242 21.9% 0 - - - - NULL ZFHX4 79776 genome.wustl.edu 37 8 77767954 77767954 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024721.4 +1 validated p.R2888* 0.478 93 0% 96 18.8% 0 - - - - HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like PMP2 5375 genome.wustl.edu 37 8 82357163 82357163 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002677.3 -1 validated p.K45N 1.000 505 0.2% 464 18.3% 0 - benign(0.12) tolerated(0.46) neutral(0.021) HMMPfam_Lipocalin,superfamily_Lipocalins CA1 759 genome.wustl.edu 37 8 86250541 86250541 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001128829.2 -1 reviewed p.E59* 0.938 573 0% 508 19.5% 0 - - - - HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd CNGB3 54714 genome.wustl.edu 37 8 87591039 87591039 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019098.4 -1 reviewed p.D661Y 0.998 360 0% 312 19.9% 0 - benign(0.002) deleterious(0.03) neutral(0.364) NULL CNGB3 54714 genome.wustl.edu 37 8 87656094 87656094 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019098.4 -1 reviewed p.R355* 1.000 252 0% 213 31% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels OTUD6B 51633 genome.wustl.edu 37 8 92082662 92082662 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016023.3 +1 validated p.R47I 1.000 282 0% 182 30.8% 5 40% possibly_damaging(0.952) tolerated(0.19) neutral(0.445) NULL SLC26A7 115111 genome.wustl.edu 37 8 92375719 92375719 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_134266.1 +1 reviewed p.K481Q 1.000 221 0% 296 17.9% 0 - benign(0.299) tolerated(0.36) neutral(0.113) NULL SLC26A7 115111 genome.wustl.edu 37 8 92406210 92406210 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_134266.1 +1 reviewed p.E626D 0.998 193 0.5% 175 18.3% 1 0% benign(0) tolerated(0.28) neutral(0.032) HMMPfam_STAS,superfamily_STAS INTS8 55656 genome.wustl.edu 37 8 95888711 95888711 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017864.2 +1 provisional p.Q955 1.000 156 0% 170 22.4% 7 42.8% - - - NULL GDF6 392255 genome.wustl.edu 37 8 97156938 97156938 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000435084 -1 known p.E324* 1.000 237 0% 165 17% 0 - - - - NULL MTERFD1 51001 genome.wustl.edu 37 8 97251734 97251734 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015942.3 -1 provisional p.F413L 1.000 110 0% 112 23.2% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL STK3 6788 genome.wustl.edu 37 8 99591893 99591893 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006281.2 -1 validated p.S316L 1.000 433 0% 489 10.6% 5 0% possibly_damaging(0.801) tolerated(0.07) deleterious(0.621) NULL STK3 6788 genome.wustl.edu 37 8 99718846 99718846 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006281.2 -1 validated p.R178H 1.000 205 0% 162 19.1% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase COX6C 1345 genome.wustl.edu 37 8 100904191 100904191 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004374.2 -1 reviewed p.R20Q 0.958 81 1.2% 89 34.8% 318 46.8% benign(0.258) tolerated(0.09) neutral(0.324) HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc RGS22 26166 genome.wustl.edu 37 8 101020698 101020698 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015668.3 -1 validated p.E756* 1.000 288 0% 311 19.3% 1 0% - - - superfamily_Regulator of G-protein signaling RGS RGS22 26166 genome.wustl.edu 37 8 101075907 101075907 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015668.3 -1 validated p.K363N 0.000 208 0% 288 16.7% 0 - possibly_damaging(0.566) deleterious(0.02) deleterious(0.577) NULL UBR5 51366 genome.wustl.edu 37 8 103299718 103299718 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015902.4 -1 reviewed p.D1634Y 1.000 280 0.4% 232 20.3% 30 13.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL UBR5 51366 genome.wustl.edu 37 8 103323594 103323594 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015902.4 -1 reviewed p.S850Y 1.000 87 0% 80 13.8% 2 50% benign(0.101) deleterious(0.03) neutral(0.372) NULL CTHRC1 115908 genome.wustl.edu 37 8 104388186 104388186 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138455.2 +1 provisional p.A124V 0.958 68 0% 77 20.8% 70 38.5% possibly_damaging(0.68) tolerated(1) neutral(0.242) NULL LRP12 29967 genome.wustl.edu 37 8 105507435 105507435 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013437.4 -1 reviewed p.S528* 1.000 137 0% 131 15.3% 1 0% - - - NULL TTC35 9694 genome.wustl.edu 37 8 109482343 109482343 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014673.3 +1 provisional p.E168* 1.000 103 0% 96 14.6% 11 0% - - - HMMPfam_TPR_2,superfamily_Prenyl_trans NUDCD1 84955 genome.wustl.edu 37 8 110308709 110308709 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032869.3 -1 validated p.F121 0.444 261 0% 201 35.8% 20 40% - - - NULL SYBU 55638 genome.wustl.edu 37 8 110587801 110587801 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099744.1 -1 validated p.F442 0.001 332 0% 243 11.9% 68 8.8% - - - NULL CSMD3 114788 genome.wustl.edu 37 8 113323299 113323299 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198123.1 -1 validated p.R2598Q 1.000 113 0% 96 11.5% 0 - probably_damaging(1) tolerated(0.42) deleterious(0.514) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain CSMD3 114788 genome.wustl.edu 37 8 113841997 113841997 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198123.1 -1 validated p.E593* 1.000 166 0% 174 24.1% 0 - - - - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ATAD2 29028 genome.wustl.edu 37 8 124358880 124358880 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014109.3 -1 reviewed p.F775V 0.651 82 0% 95 20% 0 - benign(0) tolerated(0.4) neutral(0.016) superfamily_P-loop containing nucleoside triphosphate hydrolases ATAD2 29028 genome.wustl.edu 37 8 124359507 124359507 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014109.3 -1 reviewed p.F679 0.969 166 0% 153 28.8% 2 100% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases MTSS1 9788 genome.wustl.edu 37 8 125580630 125580630 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014751.4 -1 validated p.R203Q 1.000 70 0% 81 21% 5 0% probably_damaging(0.998) tolerated(0.42) deleterious(0.488) HMMPfam_IMD MTSS1 9788 genome.wustl.edu 37 8 125603395 125603395 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014751.4 -1 validated p.S97L 1.000 155 0% 141 31.2% 1 100% benign(0.025) tolerated(0.09) neutral(0.297) HMMPfam_IMD ASAP1 50807 genome.wustl.edu 37 8 131149214 131149214 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018482.2 -1 validated p.S384Y 1.000 371 0% 328 18.6% 3 0% benign(0.002) deleterious(0.04) neutral(0.349) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 ADCY8 114 genome.wustl.edu 37 8 131862025 131862025 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001115.2 -1 reviewed p.F745L 1.000 199 0% 136 24.3% 0 - benign(0.026) tolerated(0.82) neutral(0.002) NULL EFR3A 23167 genome.wustl.edu 37 8 132982784 132982784 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015137.3 +1 validated p.F351 0.719 174 0% 157 38.2% 4 50% - - - superfamily_ARM repeat EFR3A 23167 genome.wustl.edu 37 8 132982823 132982823 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015137.3 +1 validated p.V364 0.251 174 0% 138 23.2% 6 33.3% - - - superfamily_ARM repeat ZFAT 57623 genome.wustl.edu 37 8 135545208 135545208 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020863.3 -1 reviewed p.R995H 1.000 179 0% 95 28.4% 15 33.3% probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FAM135B 51059 genome.wustl.edu 37 8 139158208 139158208 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015912.3 -1 validated p.K1178N 1.000 157 0% 148 31.8% 0 - possibly_damaging(0.811) tolerated(0.11) deleterious(0.577) HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases PTK2 5747 genome.wustl.edu 37 8 141900790 141900790 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005607.3 -1 reviewed p.S38L 0.682 86 0% 72 26.4% 20 30% possibly_damaging(0.858) tolerated(0.06) deleterious(0.653) NULL SLC45A4 57210 genome.wustl.edu 37 8 142227280 142227280 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080431.1 -1 provisional p.S495 0.967 61 0% 46 23.9% 21 9.5% - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter LY6K 54742 genome.wustl.edu 37 8 143783061 143783061 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017527.3 +1 validated p.E107D 0.031 249 0% 214 29.9% 8 100% possibly_damaging(0.892) - - superfamily_Snake toxin-like CYP11B1 1584 genome.wustl.edu 37 8 143957227 143957227 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000497.3 -1 reviewed p.R341H 1.000 33 0% 32 18.8% 0 - possibly_damaging(0.62) deleterious(0.03) deleterious(0.581) HMMPfam_p450,superfamily_Cytochrome_P450 CYP11B2 1585 genome.wustl.edu 37 8 143999218 143999218 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000498.3 -1 reviewed p.A13 0.001 60 0% 42 35.7% 0 - - - - NULL SCRIB 23513 genome.wustl.edu 37 8 144877279 144877279 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182706.3 -1 validated p.R1259W 0.000 16 0% 10 50% 40 37.5% probably_damaging(0.982) deleterious(0.05) deleterious(0.772) NULL ZNF7 7553 genome.wustl.edu 37 8 146068272 146068272 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003416.2 +1 validated p.S594A 0.000 117 0.9% 133 20.3% 3 66.6% probably_damaging(0.994) tolerated(0.14) deleterious(0.702) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 KIAA2026 158358 genome.wustl.edu 37 9 5920867 5920867 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001017969.2 -1 validated p.I1710T 1.000 134 0% 127 22.8% 7 28.5% possibly_damaging(0.918) deleterious(0) deleterious(0.813) NULL KIAA2026 158358 genome.wustl.edu 37 9 5921062 5921062 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001017969.2 -1 validated p.S1645Y 1.000 169 0% 170 30.6% 1 100% probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL GLDC 2731 genome.wustl.edu 37 9 6605220 6605220 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000170.2 -1 reviewed p.D258Y 1.000 208 0% 149 12.1% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P FREM1 158326 genome.wustl.edu 37 9 14750210 14750210 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144966.5 -1 reviewed p.V1824 1.000 357 0% 364 12.6% 0 - - - - NULL TTC39B 158219 genome.wustl.edu 37 9 15186968 15186968 + Silent SNP C C T rs192525613 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152574.2 -1 validated p.T421 0.666 280 0% 237 34.6% 7 71.4% - - - HMMPfam_Deme6,superfamily_TPR-like RRAGA 10670 genome.wustl.edu 37 9 19049949 19049949 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006570.4 +1 validated p.E98K 1.000 95 1.1% 78 28.2% 100 38% benign(0.199) deleterious(0.04) neutral(0.368) superfamily_P-loop containing nucleoside triphosphate hydrolases IFNA5 3442 genome.wustl.edu 37 9 21304974 21304974 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002169.2 -1 validated p.K94N 0.000 297 0% 263 14.8% 0 - benign(0.231) tolerated(0.07) neutral(0.342) HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine TEK 7010 genome.wustl.edu 37 9 27158095 27158095 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000459.3 +1 reviewed p.R107* 1.000 224 0% 179 18.4% 2 0% - - - HMMPfam_Ig_Tie2_1 TEK 7010 genome.wustl.edu 37 9 27228255 27228255 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000459.3 +1 reviewed p.S1084 0.994 243 0% 227 20.7% 3 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like ACO1 48 genome.wustl.edu 37 9 32430551 32430551 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002197.2 +1 reviewed p.D569N 0.964 191 0% 198 31.3% 4 75% benign(0.016) deleterious(0.04) neutral(0.349) superfamily_Aconitase iron-sulfur domain DDX58 23586 genome.wustl.edu 37 9 32488887 32488887 + Splice_Site SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014314.3 -1 reviewed e7-2 1.000 113 0% 116 15.5% 0 - - - - - TAF1L 138474 genome.wustl.edu 37 9 32634585 32634585 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153809.2 -1 provisional p.T331 0.999 355 0% 271 19.6% 0 - - - - NULL AQP7 364 genome.wustl.edu 37 9 33387046 33387046 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001170.1 -1 reviewed p.K63N 0.000 86 0% 88 20.5% 2 100% benign(0) tolerated(0.4) neutral(0.016) HMMPfam_MIP,superfamily_MIP TRBV20OR9-2 6962 genome.wustl.edu 37 9 33618237 33618237 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000379435 +1 known p.P41 0.015 65 0% 49 10.2% 0 - - - - HMMPfam_V-set,superfamily_SSF48726 ARID3C 138715 genome.wustl.edu 37 9 34625800 34625800 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001017363.1 -1 reviewed p.L110 0.997 274 0% 240 29.6% 0 - - - - HMMPfam_ARID,superfamily_ARID FAM205A 259308 genome.wustl.edu 37 9 34723944 34723944 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001141917.1 -1 validated p.R1098Q 0.000 103 0% 76 25% 0 - benign(0.301) tolerated(0.39) neutral(0.109) NULL LOC730110 730110 genome.wustl.edu 37 9 35148545 35148545 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002342891.1 -1 model p.A213T 0.000 107 0% 81 18.5% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RNF38 152006 genome.wustl.edu 37 9 36351115 36351115 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022781.4 -1 reviewed p.Y420 0.993 214 0% 166 10.8% 7 14.2% - - - NULL FBXO10 26267 genome.wustl.edu 37 9 37541343 37541343 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012166.2 -1 validated p.Y141 0.637 154 0% 123 15.4% 7 14.2% - - - superfamily_Pectin_lyas_like ANKRD18A 253650 genome.wustl.edu 37 9 38596351 38596351 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000399703 -1 known p.M329R 0.261 140 0% 130 16.9% 0 - possibly_damaging(0.526) tolerated(0.34) neutral(0.200) NULL LOC100288765 100288765 genome.wustl.edu 37 9 69830940 69830940 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002342925.1 +1 model p.V17 0.134 22 0% 20 20% 0 - - - - NULL LOC100288765 100288765 genome.wustl.edu 37 9 69846605 69846605 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002342925.1 +1 model p.I233M 0.879 22 0% 24 25% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers KLF9 687 genome.wustl.edu 37 9 73002723 73002723 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001206.2 -1 reviewed p.R235Q 0.994 73 0% 57 24.6% 1 0% probably_damaging(0.975) tolerated(0.06) deleterious(0.740) NULL TRPM6 140803 genome.wustl.edu 37 9 77442835 77442835 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017662.4 -1 reviewed p.P234T 1.000 239 0% 178 19.7% 0 - benign(0) tolerated(0.05) neutral(0.345) NULL PRUNE2 158471 genome.wustl.edu 37 9 79323525 79323525 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015225.2 -1 validated p.S1222F 0.918 127 0% 149 20.8% 0 - probably_damaging(0.998) tolerated(0.05) deleterious(0.820) NULL CEP78 84131 genome.wustl.edu 37 9 80880451 80880451 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098802.1 +1 validated p.N598H 0.846 159 0% 161 16.1% 5 100% possibly_damaging(0.63) deleterious(0) deleterious(0.664) NULL CEP78 84131 genome.wustl.edu 37 9 80881609 80881609 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098802.1 +1 validated p.K700N 0.000 142 0% 153 29.4% 3 0% unknown(0) tolerated(0.11) - NULL TLE1 7088 genome.wustl.edu 37 9 84199127 84199127 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005077.3 -1 provisional p.E767* 1.000 276 0% 270 34.1% 47 31.9% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 KIF27 55582 genome.wustl.edu 37 9 86518646 86518646 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017576.1 -1 provisional p.E263* 1.000 105 0% 92 25% 0 - - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases AGTPBP1 23287 genome.wustl.edu 37 9 88247611 88247611 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015239.2 -1 validated p.E621* 1.000 91 0% 85 21.2% 1 0% - - - NULL NFIL3 4783 genome.wustl.edu 37 9 94171922 94171922 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005384.2 -1 validated p.L365 0.003 97 0% 108 38% 4 25% - - - HMMPfam_Vert_IL3-reg_TF NOL8 55035 genome.wustl.edu 37 9 95069171 95069171 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017948.5 -1 validated p.F941C 1.000 324 0% 345 24.9% 2 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL ASPN 54829 genome.wustl.edu 37 9 95219688 95219688 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017680.3 -1 validated p.S342Y 1.000 284 0% 310 20% 0 - possibly_damaging(0.609) deleterious(0) deleterious(0.655) NULL BICD2 23299 genome.wustl.edu 37 9 95482641 95482641 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001003800.1 -1 reviewed p.D335N 0.997 73 1.4% 68 39.7% 18 44.4% possibly_damaging(0.54) tolerated(0.06) deleterious(0.506) HMMPfam_BicD ZNF484 83744 genome.wustl.edu 37 9 95609605 95609605 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031486.1 -1 provisional p.K488N 1.000 194 0% 171 25.1% 0 - probably_damaging(0.997) tolerated(0.14) deleterious(0.716) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PHF2 5253 genome.wustl.edu 37 9 96422789 96422789 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005392.3 +1 reviewed p.E549K 1.000 64 0% 36 13.9% 14 0% benign(0.313) deleterious(0.02) deleterious(0.481) NULL BARX1 56033 genome.wustl.edu 37 9 96715279 96715279 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021570.3 -1 reviewed p.K138 0.516 19 0% 21 42.9% 0 - - - - superfamily_Homeodomain-like C9orf102 375748 genome.wustl.edu 37 9 98735344 98735344 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000407474 +1 known p.S85L 0.000 182 0% 203 22.7% 1 0% benign(0.005) tolerated(0.38) neutral(0.018) NULL C9orf102 375748 genome.wustl.edu 37 9 98774646 98774646 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000407474 +1 known p.E253K 0.131 93 0% 125 13.6% 0 - possibly_damaging(0.489) tolerated(0.24) neutral(0.200) NULL SLC35D2 11046 genome.wustl.edu 37 9 99126756 99126756 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007001.2 -1 validated p.I90S 1.000 239 0% 236 26.7% 4 0% probably_damaging(0.978) deleterious(0) deleterious(0.865) PatternScan_PROTEIN_KINASE_ATP ZNF367 195828 genome.wustl.edu 37 9 99157130 99157130 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153695.3 -1 validated p.E222D 1.000 203 0% 151 31.1% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_C2H2 and C2HC zinc fingers AAED1 195827 genome.wustl.edu 37 9 99408290 99408290 + Silent SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000446045 -1 known p.K100Q 0.940 152 0% 168 19.6% 1 100% - - - NULL ZNF510 22869 genome.wustl.edu 37 9 99522233 99522233 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014930.1 -1 provisional p.K293N 0.000 251 0% 220 29.1% 0 - benign(0) deleterious(0.02) neutral(0.383) NULL C9orf174 100499483 genome.wustl.edu 37 9 100137785 100137785 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020893.1 +1 predicted p.L1575I 0.902 160 0% 179 29.6% 24 29.1% probably_damaging(0.962) tolerated(0.06) deleterious(0.728) NULL TDRD7 23424 genome.wustl.edu 37 9 100243217 100243217 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014290.2 +1 validated p.I803 0.993 449 0% 368 17.9% 9 44.4% - - - NULL LPPR1 54886 genome.wustl.edu 37 9 104048423 104048423 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017753.2 +1 reviewed p.S97* 1.000 178 0% 160 20% 0 - - - - NULL GRIN3A 116443 genome.wustl.edu 37 9 104433316 104433316 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133445.2 -1 reviewed p.E460K 1.000 162 0% 137 29.2% 0 - probably_damaging(0.971) tolerated(0.42) neutral(0.427) superfamily_SSF53822 SMC2 10592 genome.wustl.edu 37 9 106885512 106885512 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042550.1 +1 validated p.I752 1.000 224 0% 188 12.8% 1 100% - - - HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases OR13C4 138804 genome.wustl.edu 37 9 107288811 107288811 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001919.1 -1 provisional p.R227Q 0.000 207 0% 201 32.3% 0 - benign(0.141) tolerated(0.08) neutral(0.312) HMMPfam_7tm_1,superfamily_SSF81321 ABCA1 19 genome.wustl.edu 37 9 107565591 107565591 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005502.2 -1 reviewed p.K1522 1.000 439 0% 291 30.6% 1 0% - - - NULL ABCA1 19 genome.wustl.edu 37 9 107620889 107620889 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005502.2 -1 reviewed p.S212P 0.005 202 0% 192 16.7% 2 0% possibly_damaging(0.564) tolerated(0.16) neutral(0.252) NULL SLC44A1 23446 genome.wustl.edu 37 9 108118629 108118629 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080546.3 +1 validated p.E213* 1.000 243 0% 226 23% 15 0% - - - NULL ACTL7A 10881 genome.wustl.edu 37 9 111625720 111625720 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006687.2 +1 reviewed p.R373H 0.998 67 0% 36 11.1% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain PTPN3 5774 genome.wustl.edu 37 9 112199195 112199195 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002829.3 -1 reviewed p.D215N 1.000 139 0% 162 27.2% 4 25% possibly_damaging(0.604) deleterious(0) deleterious(0.654) PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729 SVEP1 79987 genome.wustl.edu 37 9 113251994 113251994 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153366.3 -1 validated p.I622 1.000 316 0% 273 17.9% 2 0% - - - HMMPfam_HYR SVEP1 79987 genome.wustl.edu 37 9 113275356 113275356 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153366.3 -1 validated p.E385K 1.000 291 0% 282 29.1% 0 - benign(0.4) tolerated(0.1) neutral(0.415) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Growth factor receptor domain,superfamily_Complement control module/SCR domain C9orf84 158401 genome.wustl.edu 37 9 114456527 114456527 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173521.3 -1 validated p.K1036T 0.858 144 0% 169 29% 0 - benign(0.006) tolerated(0.28) neutral(0.032) NULL C9orf84 158401 genome.wustl.edu 37 9 114462285 114462285 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173521.3 -1 validated p.I980M 0.998 143 0% 192 20.3% 0 - possibly_damaging(0.95) deleterious(0.03) deleterious(0.758) NULL C9orf84 158401 genome.wustl.edu 37 9 114489972 114489972 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173521.3 -1 validated p.R528Q 0.995 239 0% 258 27.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL C9orf84 158401 genome.wustl.edu 37 9 114490225 114490225 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173521.3 -1 validated p.E444* 0.847 260 0% 263 19.4% 0 - - - - NULL UGCG 7357 genome.wustl.edu 37 9 114677005 114677005 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003358.1 +1 reviewed p.F73L 1.000 151 0% 192 21.9% 5 20% possibly_damaging(0.812) tolerated(0.06) deleterious(0.628) superfamily_SSF53448 ZNF883 169834 genome.wustl.edu 37 9 115760358 115760358 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001101338.1 -1 validated p.R61I 0.966 145 0% 162 21% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ASTN2 23245 genome.wustl.edu 37 9 119738397 119738397 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198187.3 -1 reviewed p.L583I 1.000 171 0% 133 10.5% 0 - possibly_damaging(0.917) tolerated(0.16) neutral(0.427) NULL ASTN2 23245 genome.wustl.edu 37 9 119976963 119976963 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198187.3 -1 reviewed p.Q230R 1.000 34 0% 23 26.1% 1 0% benign(0.011) tolerated(1) neutral(0.001) NULL CDK5RAP2 55755 genome.wustl.edu 37 9 123182111 123182111 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018249.4 -1 reviewed p.N1378H 0.647 318 0.3% 265 23.4% 11 54.5% benign(0.223) deleterious(0.01) neutral(0.428) NULL CDK5RAP2 55755 genome.wustl.edu 37 9 123234078 123234078 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018249.4 -1 reviewed p.Q602H 0.487 200 0% 194 20.1% 6 33.3% possibly_damaging(0.66) deleterious(0.02) deleterious(0.616) NULL CDK5RAP2 55755 genome.wustl.edu 37 9 123301377 123301377 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018249.4 -1 reviewed p.R150Q 0.950 340 0% 361 35.7% 2 50% benign(0.017) tolerated(0.5) neutral(0.011) NULL DAB2IP 153090 genome.wustl.edu 37 9 124534954 124534954 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032552.2 +1 validated p.S688F 1.000 41 0% 25 24% 13 7.6% possibly_damaging(0.909) deleterious(0.03) deleterious(0.726) NULL OR1B1 347169 genome.wustl.edu 37 9 125391619 125391619 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004450.1 -1 provisional p.R66C 0.004 126 0% 86 33.7% 0 - possibly_damaging(0.588) tolerated(0.07) deleterious(0.522) HMMPfam_7tm_1,superfamily_SSF81321 ZBTB6 10773 genome.wustl.edu 37 9 125673591 125673591 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006626.4 -1 provisional p.S254* 1.000 152 0% 127 16.5% 4 25% - - - NULL SCAI 286205 genome.wustl.edu 37 9 127734010 127734010 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173690.4 -1 reviewed p.E528* 1.000 220 0.5% 236 30.1% 1 0% - - - NULL SCAI 286205 genome.wustl.edu 37 9 127828290 127828290 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173690.4 -1 reviewed p.R49I 0.064 171 0% 163 29.4% 0 - unknown(0) - - NULL FAM125B 89853 genome.wustl.edu 37 9 129243687 129243687 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033446.1 +1 validated p.S266Y 1.000 474 0.2% 445 18% 8 25% benign(0.025) deleterious(0.01) neutral(0.407) HMMPfam_DUF2464 LMX1B 4010 genome.wustl.edu 37 9 129458721 129458721 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002316.3 +1 reviewed p.F370 1.000 36 0% 39 28.2% 0 - - - - NULL GLE1 2733 genome.wustl.edu 37 9 131295925 131295925 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001003722.1 +1 reviewed p.E482D 1.000 150 0% 157 22.3% 8 37.5% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMPfam_GLE1 PRDM12 59335 genome.wustl.edu 37 9 133543581 133543581 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021619.2 +1 validated p.D151N 1.000 140 0.7% 93 32.3% 0 - probably_damaging(0.997) deleterious(0.04) deleterious(0.815) HMMSmart_SM00317,superfamily_SET domain LAMC3 10319 genome.wustl.edu 37 9 133927944 133927944 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006059.3 +1 reviewed p.P566L 0.114 44 0% 60 36.7% 5 0% benign(0.004) tolerated(0.2) neutral(0.049) HMMPfam_Laminin_B RAPGEF1 2889 genome.wustl.edu 37 9 134585033 134585033 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198679.1 -1 reviewed p.R13Q 0.939 168 0% 167 24.6% 0 - possibly_damaging(0.526) deleterious(0.04) deleterious(0.526) NULL AK8 158067 genome.wustl.edu 37 9 135602888 135602888 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152572.2 -1 validated p.I385 0.045 138 0% 107 34.6% 8 50% - - - HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases TSC1 7248 genome.wustl.edu 37 9 135782125 135782125 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000368.4 -1 reviewed p.K477N 0.999 343 0% 350 30.3% 0 - possibly_damaging(0.753) tolerated(0.07) deleterious(0.596) HMMPfam_Hamartin TMEM8C 389827 genome.wustl.edu 37 9 136384131 136384131 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080483.2 -1 validated p.F88 0.919 51 0% 37 21.6% 0 - - - - NULL VAV2 7410 genome.wustl.edu 37 9 136637093 136637093 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134398.1 -1 reviewed p.F737 0.992 268 0% 201 32.3% 36 41.6% - - - HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain COL5A1 1289 genome.wustl.edu 37 9 137623939 137623939 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000093.3 +1 reviewed p.K452T 1.000 213 0% 247 29.1% 5 0% unknown(0) deleterious(0) - NULL KCNT1 57582 genome.wustl.edu 37 9 138645825 138645825 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020822.2 +1 validated p.S159 0.054 62 0% 41 14.6% 0 - - - - NULL KCNT1 57582 genome.wustl.edu 37 9 138656879 138656879 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020822.2 +1 validated p.F346 0.982 58 0% 35 14.3% 0 - - - - HMMPfam_Ion_trans_2,superfamily_SSF81324 GRIN1 2902 genome.wustl.edu 37 9 140034094 140034094 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007327.3 +1 reviewed p.R52 0.914 32 0% 19 52.6% 0 - - - - superfamily_Periplasmic binding protein-like I TPRN 286262 genome.wustl.edu 37 9 140093786 140093786 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173691.3 -1 validated p.E399* 1.000 36 0% 42 26.2% 9 0% - - - NULL DIP2C 22982 genome.wustl.edu 37 10 428647 428647 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014974.2 -1 reviewed p.R644Q 0.993 90 0% 59 30.5% 5 60% possibly_damaging(0.92) deleterious(0.04) deleterious(0.720) superfamily_SSF56801 IDI2-AS1 55853 genome.wustl.edu 37 10 1089812 1089812 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_024628.1 +1 validated NULL 0.000 56 0% 48 27.1% 1 100% - - - - AKR1C4 1109 genome.wustl.edu 37 10 5254676 5254676 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001818.2 +1 reviewed p.R223Q 0.155 160 0.6% 154 33.8% 0 - probably_damaging(0.99) tolerated(0.06) deleterious(0.764) HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase PRKCQ 5588 genome.wustl.edu 37 10 6528025 6528025 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006257.2 -1 reviewed p.A291V 1.000 80 0% 51 33.3% 7 42.8% benign(0.175) tolerated(0.24) neutral(0.053) NULL ITIH2 3698 genome.wustl.edu 37 10 7785155 7785155 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002216.2 +1 validated p.K714N 0.999 150 0% 171 20.5% 0 - benign(0.002) tolerated(0.1) neutral(0.286) NULL CAMK1D 57118 genome.wustl.edu 37 10 12595237 12595237 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153498.2 +1 reviewed p.E36K 1.000 311 0% 296 19.6% 1 100% benign(0.044) tolerated(0.28) neutral(0.034) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase CAMK1D 57118 genome.wustl.edu 37 10 12811681 12811681 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153498.2 +1 reviewed p.L150I 1.000 246 0% 204 29.4% 2 0% possibly_damaging(0.604) deleterious(0.04) deleterious(0.558) HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PHYH 5264 genome.wustl.edu 37 10 13325800 13325800 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006214.3 -1 reviewed p.E240K 0.649 170 0% 191 26.7% 20 40% benign(0.001) tolerated(0.43) neutral(0.013) HMMPfam_PhyH PHYH 5264 genome.wustl.edu 37 10 13336522 13336522 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006214.3 -1 reviewed p.S107L 0.001 264 0% 229 40.2% 4 25% benign(0) tolerated(0.19) neutral(0.050) HMMPfam_PhyH OLAH 55301 genome.wustl.edu 37 10 15115213 15115213 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018324.2 +1 validated p.S314 0.000 170 1.2% 186 28% 0 - - - - NULL CUBN 8029 genome.wustl.edu 37 10 16893411 16893411 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001081.3 -1 reviewed p.T3162 0.002 148 0% 105 18.1% 0 - - - - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain MLLT10 8028 genome.wustl.edu 37 10 21962780 21962780 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004641.2 +1 validated p.K518T 1.000 141 0% 136 33.1% 4 25% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL COMMD3 23412 genome.wustl.edu 37 10 22606835 22606835 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000444869 +1 known p.R54* 0.997 121 0% 108 25% 46 26% - - - HMMPfam_HCaRG SPAG6 9576 genome.wustl.edu 37 10 22690107 22690107 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012443.2 +1 reviewed p.K405N 1.000 287 0% 276 20.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat PIP4K2A 5305 genome.wustl.edu 37 10 22830760 22830760 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005028.4 -1 reviewed p.D337N 1.000 73 0% 68 11.8% 26 7.6% probably_damaging(1) tolerated(0.1) deleterious(0.786) HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like ARMC3 219681 genome.wustl.edu 37 10 23248395 23248395 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173081.3 +1 validated p.K143N 1.000 89 0% 70 21.4% 5 20% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat ARHGAP21 57584 genome.wustl.edu 37 10 24909164 24909164 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020824.3 -1 validated p.R554* 1.000 141 0% 120 27.5% 2 50% - - - NULL GPR158 57512 genome.wustl.edu 37 10 25861594 25861594 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020752.2 +1 validated p.L511I 1.000 539 0% 509 29.3% 0 - possibly_damaging(0.913) tolerated(0.14) deleterious(0.614) HMMPfam_7tm_3 MYO3A 53904 genome.wustl.edu 37 10 26315388 26315388 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017433.4 +1 reviewed p.D294Y 1.000 179 0% 202 20.8% 0 - possibly_damaging(0.658) deleterious(0.03) deleterious(0.597) superfamily_Kinase_like,superfamily_SSF52540 ABI1 10006 genome.wustl.edu 37 10 27040543 27040543 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005470.3 -1 validated p.K445N 0.998 185 1.1% 169 30.2% 11 18.1% benign(0.148) deleterious(0.01) neutral(0.419) superfamily_SH3-domain YME1L1 10730 genome.wustl.edu 37 10 27431369 27431369 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139312.1 -1 reviewed p.R183Q 1.000 209 0% 231 21.6% 12 16.6% probably_damaging(0.974) deleterious(0.02) deleterious(0.799) NULL PTCHD3 374308 genome.wustl.edu 37 10 27687594 27687594 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001034842.3 -1 validated p.V645I 0.000 152 0% 143 16.1% 0 - benign(0.143) tolerated(0.19) neutral(0.062) HMMPfam_Patched PTCHD3 374308 genome.wustl.edu 37 10 27692236 27692236 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001034842.3 -1 validated p.S421Y 0.915 150 0% 123 18.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain PTCHD3 374308 genome.wustl.edu 37 10 27702873 27702873 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001034842.3 -1 validated p.E103K 0.000 29 0% 15 46.7% 0 - benign(0.35) tolerated(0.21) neutral(0.155) NULL WAC 51322 genome.wustl.edu 37 10 28872394 28872394 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016628.3 +1 reviewed p.S114Y 1.000 285 0% 290 20.3% 23 13% benign(0.09) deleterious(0) neutral(0.451) NULL SVIL 6840 genome.wustl.edu 37 10 29812790 29812790 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021738.2 -1 reviewed p.S918L 0.014 243 0.4% 206 17.5% 8 62.5% benign(0) deleterious(0.01) neutral(0.406) NULL NRP1 8829 genome.wustl.edu 37 10 33552596 33552596 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003873.5 -1 validated p.E212D 1.000 114 0% 83 19.3% 4 0% possibly_damaging(0.687) tolerated(0.72) neutral(0.247) HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ANKRD30A 91074 genome.wustl.edu 37 10 37425564 37425564 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052997.2 +1 validated p.R206L 0.000 156 0% 142 16.9% 0 - possibly_damaging(0.92) tolerated(0.05) deleterious(0.716) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ANKRD30A 91074 genome.wustl.edu 37 10 37438593 37438593 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052997.2 +1 validated p.P464T 0.001 775 0.1% 703 19.9% 0 - possibly_damaging(0.771) deleterious(0.01) deleterious(0.692) NULL ANKRD30A 91074 genome.wustl.edu 37 10 37505221 37505221 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052997.2 +1 validated p.K938N 0.714 197 0% 193 35.2% 0 - possibly_damaging(0.45) tolerated(1) neutral(0.147) NULL ZNF33A 7581 genome.wustl.edu 37 10 38305827 38305827 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006954.1 +1 validated p.S13* 0.980 277 0% 230 13.9% 7 28.5% - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF33A 7581 genome.wustl.edu 37 10 38345036 38345036 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006954.1 +1 validated p.E662* 1.000 228 0% 246 32.1% 1 0% - - - superfamily_C2H2 and C2HC zinc fingers ZNF33A 7581 genome.wustl.edu 37 10 38345326 38345326 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006954.1 +1 validated p.F758L 0.021 238 0% 217 26.3% 3 66.6% probably_damaging(0.964) deleterious(0) deleterious(0.851) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF33B 7582 genome.wustl.edu 37 10 43090003 43090003 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006955.1 -1 provisional p.S132Y 0.134 203 0% 203 27.6% 2 50% benign(0) tolerated(0.32) neutral(0.024) NULL HNRNPF 3185 genome.wustl.edu 37 10 43882424 43882424 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098204.1 -1 reviewed p.N303 0.973 59 0% 53 32.1% 212 36.7% - - - HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD WDFY4 57705 genome.wustl.edu 37 10 49939278 49939278 + Missense_Mutation SNP G G A rs148176877 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020945.1 +1 validated p.R418Q 0.119 111 0% 85 43.5% 1 0% probably_damaging(0.997) tolerated(0.07) deleterious(0.785) superfamily_ARM repeat C10orf71 118461 genome.wustl.edu 37 10 50530877 50530877 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135196.1 +1 validated p.A96V 0.998 107 0% 99 29.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL CHAT 1103 genome.wustl.edu 37 10 50856606 50856606 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020549.4 +1 reviewed p.F445 0.403 66 0% 41 39% 0 - - - - HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases PCDH15 65217 genome.wustl.edu 37 10 55581658 55581658 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142763.1 -1 reviewed p.G1950E 0.494 520 0% 414 27.3% 0 - unknown(0) tolerated(0.19) - NULL BICC1 80114 genome.wustl.edu 37 10 60556107 60556107 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080512.1 +1 reviewed p.I396S 1.000 266 0% 276 22.1% 7 57.1% probably_damaging(0.959) tolerated(0.06) deleterious(0.725) NULL ANK3 288 genome.wustl.edu 37 10 61819571 61819571 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000514197 -1 known p.S166L 0.760 179 0.6% 143 26.6% 15 20% - - - NULL ANK3 288 genome.wustl.edu 37 10 61926409 61926409 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020987.2 -1 reviewed p.R852C 1.000 168 0% 154 13.6% 5 0% benign(0.003) tolerated(0.14) neutral(0.249) superfamily_ANK RHOBTB1 9886 genome.wustl.edu 37 10 62637805 62637805 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014836.4 -1 reviewed p.P529 0.974 279 0.7% 272 21.7% 9 33.3% - - - HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB JMJD1C 221037 genome.wustl.edu 37 10 64966741 64966741 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032776.1 -1 validated p.K1563T 1.000 156 0% 177 29.4% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL JMJD1C 221037 genome.wustl.edu 37 10 64974909 64974909 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032776.1 -1 validated p.N340H 1.000 110 0% 138 15.2% 1 0% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL JMJD1C 221037 genome.wustl.edu 37 10 64975118 64975118 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032776.1 -1 validated p.R307I 1.000 853 0% 731 20.4% 9 0% possibly_damaging(0.904) deleterious(0) deleterious(0.803) NULL LRRTM3 347731 genome.wustl.edu 37 10 68687134 68687134 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178011.3 +1 validated p.R154W 1.000 82 1.2% 89 38.2% 0 - possibly_damaging(0.852) deleterious(0.05) deleterious(0.673) HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like CTNNA3 29119 genome.wustl.edu 37 10 69281633 69281633 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127384.1 -1 validated p.E182D 1.000 214 0% 240 15.4% 0 - benign(0.407) tolerated(0.62) neutral(0.136) HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin STOX1 219736 genome.wustl.edu 37 10 70645698 70645698 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001130161.2 +1 reviewed p.D716N 0.042 120 0% 113 36.3% 3 33.3% benign(0.008) tolerated(0.06) neutral(0.323) NULL STOX1 219736 genome.wustl.edu 37 10 70646106 70646106 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001130161.2 +1 reviewed p.E852K 0.570 133 0% 141 13.5% 2 0% benign(0.011) tolerated(0.84) neutral(0.001) NULL DDX50 79009 genome.wustl.edu 37 10 70673159 70673159 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024045.1 +1 reviewed p.R257Q 1.000 258 0.4% 224 37.1% 11 45.4% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases KIAA1279 26128 genome.wustl.edu 37 10 70775486 70775486 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015634.3 +1 reviewed p.E394* 1.000 219 0% 225 20.4% 1 100% - - - NULL HKDC1 80201 genome.wustl.edu 37 10 71025375 71025375 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025130.3 +1 validated p.L803 1.000 20 0% 18 22.2% 30 46.6% - - - HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain KIAA1274 27143 genome.wustl.edu 37 10 72294580 72294580 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014431.2 +1 validated p.R403Q 0.007 167 0% 127 28.3% 9 11.1% benign(0.034) tolerated(0.11) neutral(0.274) NULL C10orf27 219793 genome.wustl.edu 37 10 72531153 72531153 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000394982 -1 known p.E66K 0.000 288 0% 197 25.9% 0 - unknown(0) - - NULL C10orf55 414236 genome.wustl.edu 37 10 75671524 75671524 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001791.2 -1 validated p.K101 0.000 61 0% 50 28% 1 0% - - - NULL DLG5 9231 genome.wustl.edu 37 10 79567688 79567688 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004747.3 -1 reviewed p.D1554 0.042 48 0% 34 11.8% 59 5% - - - HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like RGR 5995 genome.wustl.edu 37 10 86012658 86012658 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002921.3 +1 reviewed p.V139A 0.997 139 0% 115 12.2% 0 - benign(0.045) tolerated(0.35) neutral(0.023) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LOC100131699 100131699 genome.wustl.edu 37 10 86320323 86320323 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001723921.2 -1 model p.S149Y 1.000 25 0% 35 20% 9 0% - - - NULL LOC100131699 100131699 genome.wustl.edu 37 10 86320773 86320773 + Silent SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001723921.2 -1 model p.T10 1.000 4 0.000 11 0.364 237 0% - - - NULL GRID1 2894 genome.wustl.edu 37 10 87898628 87898628 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017551.2 -1 reviewed p.R225H 1.000 95 0% 66 15.2% 0 - benign(0.241) tolerated(0.15) neutral(0.266) HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I MINPP1 9562 genome.wustl.edu 37 10 89312182 89312182 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004897.4 +1 validated p.T471A 0.036 72 0% 55 34.5% 0 - benign(0.071) tolerated(0.19) neutral(0.054) superfamily_Phosphoglycerate mutase-like PTEN 5728 genome.wustl.edu 37 10 89692905 89692905 + Missense_Mutation SNP G G A rs121913292 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000371953 +1 known p.R130Q 1.000 287 0% 287 32.8% 19 68.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89711983 89711983 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000371953 +1 known p.E201* 1.000 220 0% 208 33.7% 14 0% - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 ACTA2 59 genome.wustl.edu 37 10 90707098 90707098 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001141945.1 -1 reviewed p.E59K 1.000 637 0% 448 18.5% 84 1.1% benign(0.077) - - HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,superfamily_Actin-like ATPase domain SLC16A12 387700 genome.wustl.edu 37 10 91192943 91192943 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_213606.3 -1 validated p.E447* 0.998 168 0% 195 15.9% 3 0% - - - superfamily_MFS_gen_substrate_transporter KIF20B 9585 genome.wustl.edu 37 10 91468936 91468936 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016195.2 +1 validated p.E54K 0.999 88 0% 76 17.1% 0 - benign(0.066) tolerated(0.38) neutral(0.022) superfamily_P-loop containing nucleoside triphosphate hydrolases KIF20B 9585 genome.wustl.edu 37 10 91497373 91497373 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016195.2 +1 validated p.K885N 0.234 72 0% 79 11.4% 0 - benign(0) tolerated(0.07) neutral(0.319) NULL BTAF1 9044 genome.wustl.edu 37 10 93744020 93744020 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003972.2 +1 validated p.L762 0.960 147 0% 132 30.3% 2 100% - - - superfamily_ARM repeat MARCH5 54708 genome.wustl.edu 37 10 94070983 94070983 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017824.4 +1 validated p.H43N 1.000 250 0.4% 226 19% 52 44.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00744,HMMPfam_zf-C3HC4 MYOF 26509 genome.wustl.edu 37 10 95111509 95111509 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013451.3 -1 reviewed p.F1192 0.982 298 0% 315 21.6% 2 50% - - - HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) SLC35G1 159371 genome.wustl.edu 37 10 95660938 95660938 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001134658.1 +1 validated p.L263 0.045 264 0% 256 14.8% 3 33.3% - - - HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE HELLS 3070 genome.wustl.edu 37 10 96356657 96356657 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018063.3 +1 reviewed p.K763N 0.992 65 0% 92 16.3% 0 - benign(0.081) tolerated(0.44) neutral(0.019) NULL CYP2C8 1558 genome.wustl.edu 37 10 96827303 96827303 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000770.3 -1 reviewed p.R105I 0.000 344 0% 294 34.4% 1 0% - - - HMMPfam_p450,superfamily_Cytochrome_P450 SORBS1 10580 genome.wustl.edu 37 10 97111111 97111111 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001034954.1 -1 validated p.R746Q 1.000 172 0% 134 13.4% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL LCOR 84458 genome.wustl.edu 37 10 98714831 98714831 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032440.3 +1 validated p.P152S 1.000 75 0% 79 24.1% 2 50% benign(0.048) tolerated(0.2) neutral(0.052) NULL C10orf12 26148 genome.wustl.edu 37 10 98742644 98742644 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015652.2 +1 predicted p.F499L 0.000 26 0% 35 25.7% 0 - benign(0) tolerated(1) - NULL RRP12 23223 genome.wustl.edu 37 10 99132855 99132855 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015179.3 -1 validated p.R710H 1.000 52 0% 38 31.6% 35 45.7% probably_damaging(0.995) deleterious(0.01) deleterious(0.863) superfamily_ARM repeat RRP12 23223 genome.wustl.edu 37 10 99148023 99148023 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015179.3 -1 validated p.T335P 1.000 50 2% 54 35.2% 29 37.9% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat PGAM1 5223 genome.wustl.edu 37 10 99190736 99190736 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002629.2 +1 provisional p.E147K 1.000 163 0% 184 33.2% 138 44.9% benign(0.012) tolerated(0.71) neutral(0.002) HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like ENTPD7 57089 genome.wustl.edu 37 10 101458520 101458520 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020354.3 +1 validated p.E414K 1.000 133 0% 121 28.9% 8 37.5% possibly_damaging(0.857) tolerated(0.08) deleterious(0.631) HMMPfam_GDA1_CD39 ABCC2 1244 genome.wustl.edu 37 10 101571341 101571341 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000392.3 +1 reviewed p.S650L 0.000 185 0% 165 37% 1 0% benign(0) tolerated(0.38) neutral(0.018) superfamily_P-loop containing nucleoside triphosphate hydrolases ABCC2 1244 genome.wustl.edu 37 10 101578850 101578850 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000392.3 +1 reviewed p.R815Q 0.998 133 0% 108 22.2% 0 - probably_damaging(0.991) deleterious(0.02) deleterious(0.827) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCC2 1244 genome.wustl.edu 37 10 101591438 101591438 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000392.3 +1 reviewed p.A985V 0.000 216 0% 189 29.1% 0 - benign(0) tolerated(0.42) neutral(0.014) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain SEC31B 25956 genome.wustl.edu 37 10 102267212 102267212 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015490.3 -1 reviewed p.S251L 0.998 100 0% 60 20% 0 - benign(0.136) deleterious(0.02) neutral(0.395) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 BTRC 8945 genome.wustl.edu 37 10 103295126 103295126 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033637.2 +1 reviewed p.T455A 1.000 135 0% 161 15.5% 4 50% benign(0.215) deleterious(0.03) neutral(0.386) HMMSmart_SM00320,superfamily_WD40 repeat-like GBF1 8729 genome.wustl.edu 37 10 104136456 104136456 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004193.1 +1 provisional p.S1395L 1.000 76 0% 83 15.7% 94 29.7% possibly_damaging(0.932) deleterious(0) deleterious(0.823) NULL PDCD11 22984 genome.wustl.edu 37 10 105176274 105176274 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014976.1 +1 validated p.K515N 1.000 167 0% 141 12.1% 9 22.2% possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) HMMPfam_S1,superfamily_Nucleic_acid_OB,HMMSmart_S1 SH3PXD2A 9644 genome.wustl.edu 37 10 105561052 105561052 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014631.2 -1 validated p.F47L 1.000 143 0% 124 33.1% 1 100% possibly_damaging(0.88) tolerated(0.09) deleterious(0.639) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain SLK 9748 genome.wustl.edu 37 10 105762314 105762314 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014720.2 +1 provisional p.E460* 0.895 114 0% 132 25% 0 - - - - superfamily_Protein kinase-like (PK-like) WDR96 80217 genome.wustl.edu 37 10 105900610 105900610 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025145.5 -1 provisional p.S1474Y 0.997 140 0% 166 21.1% 1 0% probably_damaging(0.993) deleterious(0.01) deleterious(0.856) superfamily_WD40 repeat-like ADD3 120 genome.wustl.edu 37 10 111882009 111882009 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016824.3 +1 reviewed p.E368K 1.000 386 0% 338 21.6% 22 45.4% probably_damaging(0.994) deleterious(0.03) deleterious(0.817) NULL DUSP5 1847 genome.wustl.edu 37 10 112269977 112269977 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004419.3 +1 reviewed p.E316D 1.000 40 0% 34 29.4% 24 33.3% benign(0.004) tolerated(0.12) neutral(0.261) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 SMC3 9126 genome.wustl.edu 37 10 112360248 112360248 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005445.3 +1 reviewed p.R827* 1.000 112 2.7% 111 20.7% 0 - - - - HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases GPAM 57678 genome.wustl.edu 37 10 113941517 113941517 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020918.4 -1 validated p.G9D 1.000 305 0.3% 251 21.1% 2 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL ACSL5 51703 genome.wustl.edu 37 10 114181416 114181416 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016234.3 +1 reviewed p.W516* 1.000 147 0.7% 128 18% 145 2% - - - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like NRAP 4892 genome.wustl.edu 37 10 115413821 115413821 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198060.2 -1 validated p.E142K 0.992 197 0% 182 19.2% 0 - benign(0.011) tolerated(0.12) neutral(0.261) NULL ABLIM1 3983 genome.wustl.edu 37 10 116331101 116331101 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002313.5 -1 reviewed p.A210T 1.000 188 0% 165 26.1% 7 57.1% benign(0.406) tolerated(1) neutral(0.131) superfamily_Glucocorticoid receptor-like (DNA-binding domain) TRUB1 142940 genome.wustl.edu 37 10 116731930 116731930 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139169.4 +1 validated p.S211 0.965 265 0% 216 11.1% 0 - - - - HMMPfam_TruB_N,superfamily_PsdUridine_synth_cat_dom ATRNL1 26033 genome.wustl.edu 37 10 117045791 117045791 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207303.2 +1 validated p.E767* 1.000 215 0% 220 29.1% 0 - - - - HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like EIF3A 8661 genome.wustl.edu 37 10 120810755 120810755 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003750.2 -1 validated p.L759V 0.997 213 0% 206 18% 35 37.1% unknown(0) tolerated(0.28) - NULL DHX32 55760 genome.wustl.edu 37 10 127569154 127569154 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018180.2 -1 reviewed p.I80 0.291 193 0% 200 11.5% 13 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases C10orf90 118611 genome.wustl.edu 37 10 128192675 128192675 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004298.2 -1 validated p.S365Y 0.000 166 0% 123 25.2% 0 - probably_damaging(0.957) tolerated(0.22) neutral(0.443) NULL NPS 594857 genome.wustl.edu 37 10 129350793 129350793 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001030013.1 +1 provisional p.E54* 0.002 242 0% 222 12.2% 0 - - - - NULL PTPRE 5791 genome.wustl.edu 37 10 129881129 129881129 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006504.4 +1 reviewed p.D688Y 1.000 306 0.7% 293 26.3% 0 - benign(0.022) deleterious(0.03) neutral(0.365) HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II MKI67 4288 genome.wustl.edu 37 10 129901854 129901854 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002417.4 -1 reviewed p.T2750 0.000 249 0% 224 34.4% 15 26.6% - - - HMMPfam_K167R MKI67 4288 genome.wustl.edu 37 10 129905532 129905532 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002417.4 -1 reviewed p.F1524L 0.000 679 0.1% 546 28.8% 8 25% benign(0.009) tolerated(1) neutral(0.001) HMMPfam_K167R PPP2R2D 55844 genome.wustl.edu 37 10 133754154 133754154 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000455566 +1 known p.E114K 1.000 146 0% 139 12.9% 2 50% benign(0.08) tolerated(0.22) neutral(0.048) superfamily_WD40 repeat-like FRG2B 441581 genome.wustl.edu 37 10 135438926 135438926 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080998.1 -1 provisional p.R172* 0.191 409 0.2% 315 28.3% 0 - - - - NULL MUC5B 727897 genome.wustl.edu 37 11 1247910 1247910 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002458.1 +1 validated p.D89N 1.000 50 0% 26 23.1% 8 25% probably_damaging(1) - - HMMPfam_VWD,HMMSmart_SM00216 ENSG00000182208 0 genome.wustl.edu 37 11 1492564 1492564 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000399693 -1 known p.K151E 1.000 82 0% 48 37.5% 127 40.9% probably_damaging(1) tolerated(0.35) deleterious(0.520) HMMPfam_Mob1_phocein,superfamily_Mob1/phocein KRTAP5-3 387266 genome.wustl.edu 37 11 1629094 1629094 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001012708.2 -1 validated p.C174 0.998 210 0% 154 13.6% 0 - - - - PatternScan_VWFC_1 NAP1L4 4676 genome.wustl.edu 37 11 2993395 2993395 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005969.3 -1 reviewed p.F84L 1.000 292 0.3% 288 11.1% 20 15% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_NAP OR52K2 119774 genome.wustl.edu 37 11 4470956 4470956 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005172.2 +1 validated p.C129* 0.180 179 0% 145 25.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR52A1 23538 genome.wustl.edu 37 11 5173501 5173501 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012375.2 -1 validated p.F33L 1.000 81 0% 63 20.6% 0 - benign(0.034) tolerated(0.17) neutral(0.061) superfamily_Family A G protein-coupled receptor-like OR52H1 390067 genome.wustl.edu 37 11 5566278 5566278 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005289.1 -1 provisional p.R159Q 0.010 107 0% 91 25.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR52H1 390067 genome.wustl.edu 37 11 5566459 5566459 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005289.1 -1 provisional p.E99K 0.028 74 0% 65 13.8% 0 - benign(0.001) tolerated(0.1) neutral(0.286) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like TRIM22 10346 genome.wustl.edu 37 11 5717567 5717567 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006074.3 +1 reviewed p.C35 0.997 166 0% 120 23.3% 69 36.2% - - - HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box DNHD1 144132 genome.wustl.edu 37 11 6566506 6566506 + Missense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144666.2 +1 provisional p.K1446M 0.992 105 0% 56 10.7% 2 0% probably_damaging(0.981) deleterious(0.01) deleterious(0.831) HMMPfam_DHC_N2 DNHD1 144132 genome.wustl.edu 37 11 6578770 6578770 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144666.2 +1 provisional p.L2749 0.000 87 0% 65 20% 0 - - - - NULL TAF10 6881 genome.wustl.edu 37 11 6632529 6632529 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006284.2 -1 reviewed p.R153Q 1.000 184 0% 147 20.4% 512 29.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TFIID_30kDa DCHS1 8642 genome.wustl.edu 37 11 6655524 6655524 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003737.2 -1 reviewed p.D604G 1.000 57 0% 51 25.5% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin OR2D2 120776 genome.wustl.edu 37 11 6912941 6912941 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003700.1 -1 provisional p.S264Y 1.000 340 0% 271 17.3% 0 - probably_damaging(0.964) deleterious(0.05) deleterious(0.752) HMMPfam_7tm_1,superfamily_SSF81321 SYT9 143425 genome.wustl.edu 37 11 7334914 7334914 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175733.3 +1 validated p.I262 1.000 200 0% 169 17.2% 0 - - - - HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB NLRP10 338322 genome.wustl.edu 37 11 7982818 7982818 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_176821.3 -1 reviewed p.E114G 0.276 47 0% 36 25% 0 - possibly_damaging(0.471) deleterious(0.03) deleterious(0.520) NULL RIC3 79608 genome.wustl.edu 37 11 8148242 8148242 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024557.3 -1 validated p.E211* 1.000 310 0% 300 21.7% 0 - - - - NULL TRIM66 9866 genome.wustl.edu 37 11 8667371 8667371 + Missense_Mutation SNP G G A rs141069498 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014818.1 -1 validated p.R196C 1.000 150 0% 143 23.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00502 ENSG00000246273 0 genome.wustl.edu 37 11 9830567 9830567 + RNA SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000498905 +1 known NULL 0.000 109 0% 100 21% 1 0% - - - - SBF2 81846 genome.wustl.edu 37 11 9875182 9875182 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030962.3 -1 reviewed p.S814Y 1.000 218 0% 214 36% 1 100% possibly_damaging(0.476) tolerated(0.18) neutral(0.213) NULL ZBED5 58486 genome.wustl.edu 37 11 10875148 10875148 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143667.1 -1 reviewed p.R449C 1.000 70 0% 101 14.9% 3 33.3% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL SPON1 10418 genome.wustl.edu 37 11 14277324 14277324 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006108.2 +1 validated p.S408L 1.000 116 0% 92 39.1% 64 79.6% unknown(0) - - NULL SPON1 10418 genome.wustl.edu 37 11 14284333 14284333 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000310358 +1 known p.R690Q 1.000 73 0% 68 22.1% 75 61.3% unknown(0) - - HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat PDE3B 5140 genome.wustl.edu 37 11 14865419 14865419 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000922.3 +1 validated p.S789 0.577 480 0% 400 33.3% 2 0% - - - HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like MRGPRX1 259249 genome.wustl.edu 37 11 18955858 18955858 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_147199.3 -1 provisional p.W158* 0.001 375 0% 310 22.6% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 SLC6A5 9152 genome.wustl.edu 37 11 20623066 20623066 + Missense_Mutation SNP C C T rs34243519 byCluster;byFrequency;by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004211.3 +1 reviewed p.A132V 0.006 83 0% 66 24.2% 0 - possibly_damaging(0.794) tolerated(0.12) deleterious(0.558) NULL NELL1 4745 genome.wustl.edu 37 11 21592440 21592440 + Missense_Mutation SNP G G A rs147192308 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006157.3 +1 reviewed p.R704Q 1.000 230 0% 192 19.8% 9 0% possibly_damaging(0.768) tolerated(0.27) neutral(0.319) HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215 ANO5 203859 genome.wustl.edu 37 11 22261188 22261188 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_213599.2 +1 reviewed p.R279L 0.153 175 0% 158 20.9% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL GAS2 2620 genome.wustl.edu 37 11 22747918 22747918 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143830.1 +1 reviewed p.F116L 1.000 482 0% 486 35.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain GAS2 2620 genome.wustl.edu 37 11 22770804 22770804 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143830.1 +1 reviewed p.D204 1.000 173 0% 151 10.6% 1 0% - - - HMMPfam_GAS2,HMMSmart_SM00243 SLC5A12 159963 genome.wustl.edu 37 11 26694952 26694952 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178498.3 -1 validated p.E568 0.871 166 0% 138 22.5% 0 - - - - NULL KIF18A 81930 genome.wustl.edu 37 11 28080540 28080540 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031217.3 -1 validated p.N627 0.000 263 0% 203 12.3% 0 - - - - NULL KIF18A 81930 genome.wustl.edu 37 11 28104513 28104513 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031217.3 -1 validated p.I384M 1.000 191 0% 243 21.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF52540 HIPK3 10114 genome.wustl.edu 37 11 33362666 33362666 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005734.3 +1 validated p.R589I 1.000 100 0% 105 20% 7 28.5% possibly_damaging(0.446) tolerated(0.13) neutral(0.398) NULL C11orf41 25758 genome.wustl.edu 37 11 33596290 33596290 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012194.1 +1 validated p.E1134K 1.000 89 0% 79 12.7% 1 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL ELF5 2001 genome.wustl.edu 37 11 34504039 34504039 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198381.1 -1 reviewed p.D148 0.473 247 0% 213 19.2% 0 - - - - NULL PDHX 8050 genome.wustl.edu 37 11 35016492 35016492 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003477.2 +1 reviewed p.E427* 1.000 186 0% 144 36.1% 20 30% - - - HMMPfam_2-oxoacid_dh,superfamily_SSF52777 PAMR1 25891 genome.wustl.edu 37 11 35492215 35492215 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015430.2 -1 validated p.V216I 0.027 145 0% 96 21.9% 16 6.2% benign(0) tolerated(0.9) - HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB PAMR1 25891 genome.wustl.edu 37 11 35513654 35513654 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015430.2 -1 validated p.F106L 1.000 129 0% 126 23.8% 11 9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_EGF RAG1 5896 genome.wustl.edu 37 11 36597530 36597530 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000448.2 +1 reviewed p.M892I 1.000 182 0% 138 36.2% 1 0% probably_damaging(0.954) deleterious(0) deleterious(0.842) NULL RAG2 5897 genome.wustl.edu 37 11 36614523 36614523 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000536.3 -1 reviewed p.F399C 1.000 334 0% 289 30.4% 0 - benign(0.043) deleterious(0.01) neutral(0.408) HMMPfam_RAG2 TSPAN18 90139 genome.wustl.edu 37 11 44948254 44948254 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_130783.4 +1 validated p.F215 0.950 110 0% 83 36.1% 3 0% - - - superfamily_Tetraspanin,HMMPfam_Tetraspannin CHRM4 1132 genome.wustl.edu 37 11 46406905 46406905 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000741.2 -1 reviewed p.T401 1.000 128 0% 117 18.8% 3 33.3% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like F2 2147 genome.wustl.edu 37 11 46744971 46744971 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000446804 +1 known p.E4* 1.000 41 0% 35 22.9% 0 - - - - NULL CKAP5 9793 genome.wustl.edu 37 11 46817268 46817268 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001008938.1 -1 validated p.A509V 1.000 321 0% 271 29.5% 14 57.1% benign(0.024) deleterious(0.02) neutral(0.384) superfamily_ARM repeat KBTBD4 55709 genome.wustl.edu 37 11 47594631 47594631 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018095.4 -1 validated p.A486T 1.000 56 0% 51 45.1% 39 41% benign(0.195) tolerated(0.54) neutral(0.026) superfamily_Galactose oxidase central domain LOC120824 120824 genome.wustl.edu 37 11 49002528 49002528 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_062300.6 -1 model p.S146Y 0.006 31 0% 32 21.9% 0 - - - - NULL FOLH1 2346 genome.wustl.edu 37 11 49227652 49227652 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004476.1 -1 reviewed p.E64A 1.000 237 0% 235 38.3% 2 50% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL OR4C13 283092 genome.wustl.edu 37 11 49974554 49974554 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001955.2 +1 validated p.G194* 0.054 359 0.3% 305 31.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR4A5 81318 genome.wustl.edu 37 11 51411994 51411994 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005272.3 -1 validated p.M134I 0.993 211 0% 173 19.7% 0 - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR4A15 81328 genome.wustl.edu 37 11 55135385 55135385 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005275.1 +1 provisional p.K9T 0.002 44 0% 49 34.7% 0 - probably_damaging(0.988) - - NULL ENSG00000181943 0 genome.wustl.edu 37 11 55258794 55258794 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000314657 +1 known p.G26S 0.091 79 0% 65 24.6% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR5D13 390142 genome.wustl.edu 37 11 55541805 55541805 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001967.1 +1 provisional p.D298N 1.000 150 0% 136 16.9% 0 - possibly_damaging(0.948) deleterious(0.01) deleterious(0.796) superfamily_SSF81321 OR5D18 219438 genome.wustl.edu 37 11 55587411 55587411 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001952.1 +1 provisional p.F102L 0.114 277 0% 204 20.6% 0 - benign(0.085) tolerated(0.46) neutral(0.018) HMMPfam_7tm_1,superfamily_SSF81321 OR5D16 390144 genome.wustl.edu 37 11 55607088 55607088 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005496.1 +1 provisional p.L287F 0.170 155 0% 150 21.3% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,superfamily_SSF81321 OR5T3 390154 genome.wustl.edu 37 11 56019871 56019871 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004747.1 +1 provisional p.L66F 0.000 308 0% 249 29.3% 0 - probably_damaging(0.976) tolerated(0.07) deleterious(0.737) superfamily_SSF81321 OR5T1 390155 genome.wustl.edu 37 11 56043433 56043433 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004745.1 +1 provisional p.L107I 0.000 232 0% 205 33.7% 0 - benign(0.002) tolerated(0.43) neutral(0.013) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ENSG00000230416 0 genome.wustl.edu 37 11 56216349 56216349 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000415874 +1 known p.V69A 0.566 97 0% 86 17.4% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR5M8 219484 genome.wustl.edu 37 11 56258601 56258601 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005282.1 -1 provisional p.E82D 0.000 75 0% 66 43.9% 0 - possibly_damaging(0.604) tolerated(0.1) deleterious(0.496) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR4D6 219983 genome.wustl.edu 37 11 59224931 59224931 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004708.1 +1 provisional p.F166 0.483 464 0% 364 33% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR4D10 390197 genome.wustl.edu 37 11 59245746 59245746 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004705.1 +1 provisional p.L282F 0.070 294 0% 214 25.2% 0 - benign(0.392) deleterious(0.04) deleterious(0.474) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SYT7 9066 genome.wustl.edu 37 11 61295622 61295622 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004200.2 -1 validated p.E129 0.999 45 0% 44 20.5% 3 33.3% - - - superfamily_C2_CaLB GPHA2 170589 genome.wustl.edu 37 11 64702546 64702546 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_130769.3 -1 validated p.R69W 0.992 34 0% 32 15.6% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL EHBP1L1 254102 genome.wustl.edu 37 11 65349969 65349969 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099409.1 +1 validated p.E609G 0.004 43 0% 44 20.5% 4 25% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL MAP3K11 4296 genome.wustl.edu 37 11 65375136 65375136 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002419.3 -1 reviewed p.F407 1.000 58 0% 44 20.5% 46 15.2% - - - NULL MAP3K11 4296 genome.wustl.edu 37 11 65380717 65380717 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002419.3 -1 reviewed p.L171 1.000 25 0% 14 50% 117 38.4% - - - HMMSmart_TyrKc,superfamily_Kinase_like,HMMPfam_Pkinase NPAS4 266743 genome.wustl.edu 37 11 66190641 66190641 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178864.3 +1 validated p.S249* 1.000 132 0% 99 24.2% 0 - - - - HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785 RBM14 10432 genome.wustl.edu 37 11 66394094 66394094 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006328.3 +1 validated p.Y655* 1.000 67 0% 58 31% 24 33.3% - - - NULL SPTBN2 6712 genome.wustl.edu 37 11 66483313 66483313 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006946.2 -1 reviewed p.S99 0.004 142 0% 144 20.8% 3 66.6% - - - HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain KDM2A 22992 genome.wustl.edu 37 11 66995534 66995534 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012308.2 +1 reviewed p.F328 1.000 253 0% 239 25.1% 20 45% - - - superfamily_Clavaminate synthase-like CARNS1 57571 genome.wustl.edu 37 11 67186991 67186991 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020811.1 +1 validated p.G173W 0.838 42 2.4% 36 19.4% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PITPNM1 9600 genome.wustl.edu 37 11 67267237 67267237 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004910.2 -1 validated p.F376L 0.998 82 0% 69 11.6% 57 31.5% benign(0.001) tolerated(1) - NULL LAMTOR1 55004 genome.wustl.edu 37 11 71809401 71809401 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017907.1 -1 provisional p.P109 0.308 64 0% 42 26.2% 432 48.3% - - - NULL PPME1 51400 genome.wustl.edu 37 11 73933406 73933406 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016147.1 +1 provisional p.R113Q 1.000 593 0% 570 10.7% 49 10.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases POLD3 10714 genome.wustl.edu 37 11 74329805 74329805 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006591.1 +1 validated p.E206* 1.000 167 0% 178 20.8% 14 7.1% - - - HMMPfam_CDC27 RNF169 254225 genome.wustl.edu 37 11 74521238 74521238 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098638.1 +1 validated p.E196* 1.000 133 0% 137 28.5% 0 - - - - NULL PRKRIR 5612 genome.wustl.edu 37 11 76076939 76076939 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004705.2 -1 provisional p.R56Q 1.000 409 0.2% 391 18.2% 3 0% benign(0.031) deleterious(0.04) neutral(0.350) HMMPfam_THAP,HMMSmart_SM00692 ODZ4 26011 genome.wustl.edu 37 11 78412977 78412977 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098816.2 -1 validated p.R1561W 1.000 143 0% 100 31% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_NHL,superfamily_SSF101898,superfamily_TolB_C C11orf82 220042 genome.wustl.edu 37 11 82643419 82643419 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145018.3 +1 validated p.P347S 0.001 73 0% 60 26.7% 5 0% possibly_damaging(0.477) tolerated(0.11) neutral(0.429) NULL SYTL2 54843 genome.wustl.edu 37 11 85448665 85448665 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032943.3 -1 reviewed p.D142Y 0.047 386 0.3% 340 26.5% 1 0% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL PICALM 8301 genome.wustl.edu 37 11 85742628 85742628 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007166.2 -1 validated p.M52I 1.000 204 0% 201 10.9% 14 7.1% benign(0.022) tolerated(0.07) neutral(0.320) superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273 TRIM77P 390231 genome.wustl.edu 37 11 89447493 89447493 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002343107.1 +1 model p.R214I 0.000 172 0% 181 23.8% 0 - - - - NULL TRIM64B 642446 genome.wustl.edu 37 11 89603911 89603911 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000329862 -1 known p.L410M 0.997 1369 0% 1387 14.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SPRY CHORDC1 26973 genome.wustl.edu 37 11 89947213 89947213 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012124.2 -1 validated p.K101T 0.999 424 0% 338 17.5% 8 12.5% probably_damaging(0.981) tolerated(0.06) deleterious(0.748) NULL MED17 9440 genome.wustl.edu 37 11 93529633 93529633 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004268.4 +1 reviewed p.F357C 0.028 416 0.2% 351 12% 2 0% benign(0) tolerated(0.19) neutral(0.050) HMMPfam_DUF2364 MRE11A 4361 genome.wustl.edu 37 11 94194110 94194110 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005591.3 -1 reviewed p.A440T 0.995 356 0.3% 338 16.9% 1 0% benign(0.066) tolerated(0.17) neutral(0.064) HMMPfam_Mre11_DNA_bind AMOTL1 154810 genome.wustl.edu 37 11 94532846 94532846 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_130847.2 +1 reviewed p.E164* 1.000 66 0% 59 20.3% 17 29.4% - - - NULL SESN3 143686 genome.wustl.edu 37 11 94906474 94906474 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144665.2 -1 provisional p.R475Q 0.998 135 0% 112 22.3% 7 57.1% probably_damaging(0.987) deleterious(0) deleterious(0.881) HMMPfam_PA26 MTMR2 8898 genome.wustl.edu 37 11 95621404 95621404 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016156.5 -1 reviewed p.E34D 1.000 200 0% 196 16.3% 3 0% benign(0) tolerated(0.2) neutral(0.049) NULL MAML2 84441 genome.wustl.edu 37 11 95826594 95826594 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032427.1 -1 validated p.L201I 1.000 143 0% 172 21.5% 0 - unknown(0) tolerated(0.28) - NULL CNTN5 53942 genome.wustl.edu 37 11 100064359 100064359 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014361.2 +1 reviewed p.F616 0.900 158 0% 143 16.1% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin C11orf70 85016 genome.wustl.edu 37 11 101951950 101951950 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032930.1 +1 predicted p.R167* 1.000 217 0% 211 21.8% 2 0% - - - NULL LOC100289609 100289609 genome.wustl.edu 37 11 102668127 102668127 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002343120.1 +1 model p.E44* 1.000 349 0% 275 22.5% 0 - possibly_damaging(0.698) tolerated(0.07) deleterious(0.570) NULL MMP12 4321 genome.wustl.edu 37 11 102742358 102742358 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000326227 -1 known p.F197 1.000 146 0% 138 28.3% 6 0% - - - "HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain" DYNC2H1 79659 genome.wustl.edu 37 11 103349849 103349849 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080463.1 +1 reviewed p.D4271 0.661 216 0% 186 17.7% 20 45% - - - HMMPfam_Dynein_heavy CASP1 834 genome.wustl.edu 37 11 104901197 104901197 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033292.2 -1 reviewed p.R163C 0.997 160 0% 123 16.3% 15 40% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like AASDHPPT 60496 genome.wustl.edu 37 11 105961323 105961323 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015423.2 +1 reviewed p.R150I 1.000 192 0% 201 21.9% 3 33.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_ACPS,superfamily_4-PPT_transf SLC35F2 54733 genome.wustl.edu 37 11 107729403 107729403 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017515.4 -1 validated p.K31Q 0.000 9 0.000 8 0.750 1 100% benign(0.004) tolerated(0.18) neutral(0.056) HMMPfam_DUF914 ATM 472 genome.wustl.edu 37 11 108206668 108206668 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000051.3 +1 reviewed p.L2750 0.527 196 0% 139 12.2% 18 11.1% - - - HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat ATM 472 genome.wustl.edu 37 11 108216508 108216508 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000051.3 +1 reviewed p.V2819 0.947 153 0% 179 21.8% 0 - - - - HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat EXPH5 23086 genome.wustl.edu 37 11 108380490 108380490 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015065.2 -1 validated p.F1915C 1.000 119 0% 136 34.6% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ARHGAP20 57569 genome.wustl.edu 37 11 110454414 110454414 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020809.2 -1 validated p.L488R 1.000 193 0% 169 33.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP ZW10 9183 genome.wustl.edu 37 11 113628402 113628402 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004724.2 -1 reviewed p.L303F 1.000 124 0% 111 27% 1 100% benign(0.041) tolerated(0.17) neutral(0.061) HMMPfam_Zw10 APOA1 335 genome.wustl.edu 37 11 116707098 116707098 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000039.1 -1 reviewed p.V77A 0.661 52 0% 36 16.7% 2 50% benign(0.028) deleterious(0.01) neutral(0.407) HMMPfam_Apolipoprotein,superfamily_SSF47162 CD3D 915 genome.wustl.edu 37 11 118209930 118209930 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000732.4 -1 reviewed p.R155* 0.369 98 0% 80 22.5% 58 0% - - - HMMPfam_ITAM,HMMSmart_SM00077 DPAGT1 1798 genome.wustl.edu 37 11 118971049 118971049 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001382.3 -1 reviewed p.G189E 1.000 121 0% 89 32.6% 54 31.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glycos_transf_4 RNF26 79102 genome.wustl.edu 37 11 119206936 119206936 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032015.3 +1 reviewed p.W368* 1.000 102 0% 65 36.9% 45 46.6% - - - superfamily_RING/U-box GRIK4 2900 genome.wustl.edu 37 11 120690496 120690496 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014619.2 +1 reviewed p.F126 0.995 173 0.6% 142 31.7% 2 50% - - - HMMPfam_ANF_receptor,superfamily_SSF53822 SORL1 6653 genome.wustl.edu 37 11 121384925 121384925 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003105.4 +1 reviewed p.R369H 1.000 152 0% 119 17.6% 14 35.7% benign(0.339) deleterious(0.05) neutral(0.452) HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase C11orf63 79864 genome.wustl.edu 37 11 122805249 122805249 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024806.2 +1 validated p.R367Q 0.000 109 0% 87 28.7% 8 12.5% possibly_damaging(0.819) deleterious(0) deleterious(0.754) NULL OR10G9 219870 genome.wustl.edu 37 11 123893914 123893914 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001953.1 +1 provisional p.S65 0.341 339 0% 238 21.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR8B4 283162 genome.wustl.edu 37 11 124294410 124294410 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005196.1 -1 provisional p.D120Y 1.000 124 0.8% 102 16.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 SIAE 54414 genome.wustl.edu 37 11 124519638 124519638 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_170601.3 -1 validated p.G200E 1.000 146 0% 102 25.5% 28 46.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF303 ROBO4 54538 genome.wustl.edu 37 11 124761394 124761394 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019055.5 -1 validated p.G583 1.000 63 0% 75 12% 1 0% - - - NULL CCDC15 80071 genome.wustl.edu 37 11 124857968 124857968 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025004.2 +1 validated p.L616F 0.001 249 0% 293 31.4% 0 - probably_damaging(0.981) tolerated(0.1) deleterious(0.712) NULL FEZ1 9638 genome.wustl.edu 37 11 125351486 125351486 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005103.3 -1 reviewed p.E119* 0.966 210 0% 175 22.9% 1 0% - - - HMMPfam_FEZ PATE1 160065 genome.wustl.edu 37 11 125617642 125617642 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138294.2 +1 validated p.E58* 0.145 111 0% 115 13.9% 0 - - - - NULL SRPR 6734 genome.wustl.edu 37 11 126135871 126135871 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003139.3 -1 reviewed p.R346 0.693 176 0% 141 27.7% 395 23.2% - - - superfamily_SRP54 SLC6A12 6539 genome.wustl.edu 37 12 306593 306593 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001122847.1 -1 validated p.G342D 1.000 91 0% 79 16.5% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF WNK1 65125 genome.wustl.edu 37 12 922921 922921 + Silent SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018979.3 +1 reviewed p.V291 0.998 266 0% 264 20.8% 1 100% - - - superfamily_Kinase_like,HMMPfam_Pkinase CACNA2D4 93589 genome.wustl.edu 37 12 1988975 1988975 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_172364.4 -1 reviewed p.E520K 0.999 88 0% 65 24.6% 0 - possibly_damaging(0.837) tolerated(0.19) neutral(0.369) HMMPfam_Cache_1 CACNA1C 775 genome.wustl.edu 37 12 2706648 2706648 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_199460.2 +1 reviewed p.E967* 1.000 186 0% 147 27.2% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels C12orf5 57103 genome.wustl.edu 37 12 4459007 4459007 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020375.2 +1 reviewed p.R72I 0.985 213 0% 241 27.4% 7 71.4% benign(0.001) deleterious(0.05) neutral(0.345) HMMPfam_PGAM,superfamily_SSF53254 C12orf4 57102 genome.wustl.edu 37 12 4626310 4626310 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020374.2 -1 predicted p.R360Q 0.030 238 0.4% 223 27.8% 1 100% benign(0.003) tolerated(0.71) neutral(0.002) HMMPfam_DUF2362 DYRK4 8798 genome.wustl.edu 37 12 4702297 4702297 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003845.1 +1 provisional p.T83M 0.773 106 0% 72 11.1% 2 0% benign(0.012) tolerated(0.24) neutral(0.038) NULL AKAP3 10566 genome.wustl.edu 37 12 4736979 4736979 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006422.2 -1 reviewed p.F363L 0.577 226 0% 174 27% 1 100% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_AKAP_110,HMMSmart_SM00807 AKAP3 10566 genome.wustl.edu 37 12 4737281 4737281 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006422.2 -1 reviewed p.R263W 0.007 95 0% 90 33.3% 0 - benign(0) deleterious(0.02) neutral(0.383) HMMPfam_AKAP_110,HMMSmart_SM00807 CD4 920 genome.wustl.edu 37 12 6925289 6925289 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000616.3 +1 validated p.L225 0.000 125 0% 105 18.1% 18 0% - - - HMMSmart_SM00409,HMMPfam_CD4-extracel,superfamily_Immunoglobulin C1S 716 genome.wustl.edu 37 12 7174372 7174372 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001734.3 +1 reviewed p.S339 0.860 340 0.3% 270 32.2% 74 17.5% - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module FOXJ2 55810 genome.wustl.edu 37 12 8200558 8200560 + In_Frame_Del DEL CAG CAG - novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 CAG CAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018416.2 +1 validated p.Q303in_frame_del 0.958:0.974:0.973 - - - - - - - - - NULL CD69 969 genome.wustl.edu 37 12 9907102 9907102 + RNA SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_026671.1 -1 reviewed NULL 0.005 81 0% 101 24.8% 0 - - - - - CLEC12A 160364 genome.wustl.edu 37 12 10132004 10132004 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138337.5 +1 reviewed p.R87I 0.022 147 0% 169 32% 1 0% probably_damaging(0.996) tolerated(0.07) deleterious(0.780) NULL CSDA 8531 genome.wustl.edu 37 12 10871688 10871688 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003651.4 -1 validated p.F106C 1.000 207 0% 160 28.7% 58 48.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK TAS2R8 50836 genome.wustl.edu 37 12 10959222 10959222 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_023918.1 -1 reviewed p.L120I 0.925 188 0% 177 33.3% 0 - probably_damaging(0.973) deleterious(0.05) deleterious(0.760) HMMPfam_TAS2R,superfamily_SSF81321 DUSP16 80824 genome.wustl.edu 37 12 12630142 12630142 + Silent SNP C C T rs143261305 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030640.2 -1 reviewed p.S541 0.835 76 0% 81 35.8% 28 39.2% - - - NULL GPRC5D 55507 genome.wustl.edu 37 12 13102964 13102964 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018654.1 -1 reviewed p.R119W 1.000 143 0% 115 18.3% 3 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_3 EMP1 2012 genome.wustl.edu 37 12 13367619 13367619 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001423.2 +1 validated p.K156N 1.000 141 0% 135 20.7% 6 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL GRIN2B 2904 genome.wustl.edu 37 12 13764735 13764735 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000834.3 -1 reviewed p.I568 0.915 124 0% 121 10.7% 0 - - - - HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850 C12orf69 440087 genome.wustl.edu 37 12 14959262 14959262 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001013698.2 -1 validated p.S118L 0.984 258 0% 240 34.2% 0 - possibly_damaging(0.621) deleterious(0) deleterious(0.661) NULL PIK3C2G 5288 genome.wustl.edu 37 12 18716366 18716366 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004570.4 +1 reviewed p.S1238* 0.982 184 0% 163 12.9% 0 - - - - HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain CMAS 55907 genome.wustl.edu 37 12 22214321 22214321 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018686.3 +1 reviewed p.E299* 1.000 161 0% 136 18.4% 2 0% - - - HMMPfam_CTP_transf_3,superfamily_HAD-like KIAA0528 9847 genome.wustl.edu 37 12 22623827 22623827 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014802.1 -1 predicted p.A793T 1.000 448 0% 483 21.5% 1 100% possibly_damaging(0.496) tolerated(0.11) neutral(0.437) NULL KIAA0528 9847 genome.wustl.edu 37 12 22677465 22677465 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014802.1 -1 predicted p.R181Q 1.000 291 0% 266 29.3% 14 57.1% probably_damaging(0.971) deleterious(0.02) deleterious(0.796) NULL LRMP 4033 genome.wustl.edu 37 12 25236422 25236422 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006152.2 +1 reviewed p.N104H 0.003 236 0% 203 38.4% 0 - benign(0.133) deleterious(0.02) neutral(0.394) HMMPfam_MRVI1 ITPR2 3709 genome.wustl.edu 37 12 26580883 26580883 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002223.2 -1 validated p.G2303D 1.000 216 0% 223 28.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ITPR2 3709 genome.wustl.edu 37 12 26714717 26714717 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002223.2 -1 validated p.R1600K 0.966 65 0% 54 25.9% 2 0% benign(0) tolerated(0.43) neutral(0.013) NULL ITPR2 3709 genome.wustl.edu 37 12 26781066 26781066 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002223.2 -1 validated p.R988 0.999 187 0% 156 28.8% 5 40% - - - NULL C12orf70 341346 genome.wustl.edu 37 12 27647270 27647270 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145010.1 +1 validated p.K213T 0.992 262 0% 250 19.2% 0 - benign(0.224) deleterious(0) neutral(0.467) NULL TMTC1 83857 genome.wustl.edu 37 12 29669375 29669375 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175861.2 -1 provisional p.K630N 0.978 251 0% 185 35.7% 5 60% benign(0.019) tolerated(0.16) neutral(0.060) superfamily_Protein prenylyltransferase,superfamily_TPR-like DDX11 1663 genome.wustl.edu 37 12 31249282 31249282 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152438.1 +1 reviewed p.R497Q 0.999 364 0% 363 20.4% 16 37.5% benign(0.026) tolerated(0.09) neutral(0.297) NULL DENND5B 160518 genome.wustl.edu 37 12 31579260 31579260 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144973.3 -1 validated p.F735 1.000 257 0% 276 11.6% 0 - - - - NULL FGD4 121512 genome.wustl.edu 37 12 32793449 32793449 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139241.2 +1 reviewed p.K761N 0.000 46 0% 31 32.3% 2 50% benign(0.186) tolerated(0.09) neutral(0.314) NULL KIF21A 55605 genome.wustl.edu 37 12 39752122 39752122 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017641.3 -1 validated p.T358M 1.000 416 0% 367 31.9% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases LRRK2 120892 genome.wustl.edu 37 12 40696648 40696648 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198578.3 +1 reviewed p.F1185C 1.000 175 0% 187 19.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52058 PUS7L 83448 genome.wustl.edu 37 12 44124467 44124467 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098614.1 -1 validated p.P606 0.162 234 0% 226 13.7% 3 33.3% - - - HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom NELL2 4753 genome.wustl.edu 37 12 44917170 44917170 + Missense_Mutation SNP C C A rs34214960 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145107.1 -1 reviewed p.K684N 1.000 160 0% 104 34.6% 4 0% possibly_damaging(0.837) tolerated(0.23) neutral(0.361) HMMPfam_EGF_CA,superfamily_SSF57196 SCAF11 9169 genome.wustl.edu 37 12 46320332 46320332 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004719.2 -1 validated p.R1051I 1.000 77 0% 88 18.2% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL SCAF11 9169 genome.wustl.edu 37 12 46321008 46321008 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004719.2 -1 validated p.E826* 1.000 238 0% 281 34.5% 0 - - - - NULL SCAF11 9169 genome.wustl.edu 37 12 46321933 46321933 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004719.2 -1 validated p.E517D 0.092 142 0% 160 25% 2 50% benign(0.026) tolerated(0.64) neutral(0.004) NULL RAPGEF3 10411 genome.wustl.edu 37 12 48134566 48134566 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098531.2 -1 validated p.R697Q 0.979 37 0% 33 12.1% 8 0% probably_damaging(0.98) tolerated(0.34) neutral(0.447) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF KANSL2 54934 genome.wustl.edu 37 12 49048753 49048753 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017822.3 -1 validated p.E440* 1.000 253 0% 238 32.4% 16 25% - - - NULL ADCY6 112 genome.wustl.edu 37 12 49170270 49170270 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015270.3 -1 reviewed p.F492 0.958 34 0% 33 12.1% 83 15.6% - - - HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1 ARF3 377 genome.wustl.edu 37 12 49334753 49334753 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001659.2 -1 reviewed p.I42 0.669 168 0% 144 18.8% 260 20.7% - - - HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases FMNL3 91010 genome.wustl.edu 37 12 50059986 50059986 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175736.4 -1 validated p.R72Q 1.000 312 0% 278 33.1% 1 0% probably_damaging(0.991) tolerated(0.06) deleterious(0.766) HMMPfam_Drf_GBD NCKAP5L 57701 genome.wustl.edu 37 12 50196893 50196893 + Missense_Mutation SNP C C T rs184937545 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001037806.3 -1 validated p.R60H 1.000 88 0% 60 13.3% 12 8.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RACGAP1 29127 genome.wustl.edu 37 12 50393510 50393510 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001126103.1 -1 validated p.E213* 1.000 102 0% 73 35.6% 9 11.1% - - - NULL FAM186A 121006 genome.wustl.edu 37 12 50745280 50745280 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145475.1 -1 provisional p.E1779* 0.000 40 2.5% 56 26.8% 0 - - - - NULL SCN8A 6334 genome.wustl.edu 37 12 52168095 52168095 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014191.2 +1 reviewed p.F1256 1.000 390 0% 291 33% 1 0% - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels KRT72 140807 genome.wustl.edu 37 12 52981453 52981453 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080747.2 -1 reviewed p.I424 1.000 130 0% 75 32% 0 - - - - HMMPfam_Filament,PatternScan_IF KRT73 319101 genome.wustl.edu 37 12 53004521 53004521 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175068.2 -1 reviewed p.L403 1.000 96 0% 46 34.8% 0 - - - - HMMPfam_Filament KRT2 3849 genome.wustl.edu 37 12 53040562 53040562 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000423.2 -1 reviewed p.I477 0.178 87 0% 62 12.9% 1 0% - - - HMMPfam_Filament,PatternScan_IF TARBP2 6895 genome.wustl.edu 37 12 53898557 53898557 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_134323.1 +1 reviewed p.E191* 1.000 148 0% 129 27.9% 24 8.3% - - - HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like OR6C65 403282 genome.wustl.edu 37 12 55794646 55794646 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005518.1 +1 provisional p.L112I 0.296 125 0% 177 19.8% 0 - probably_damaging(0.994) tolerated(0.09) deleterious(0.748) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 PHC1P1 653441 genome.wustl.edu 37 12 55807201 55807201 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000326184 -1 known p.P440 0.850 358 0% 274 14.6% 57 0% - - - NULL OR2AP1 121129 genome.wustl.edu 37 12 55968375 55968375 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000321688 +1 known p.F59L 0.997 17 0% 23 17.4% 0 - possibly_damaging(0.728) deleterious(0.01) deleterious(0.671) HMMPfam_7tm_1,superfamily_SSF81321 HSD17B6 8630 genome.wustl.edu 37 12 57181011 57181011 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003725.2 +1 reviewed p.R280Q 0.943 138 0% 140 11.4% 3 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_NAD(P)-bd KIF5A 3798 genome.wustl.edu 37 12 57957931 57957931 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004984.2 +1 reviewed p.R111Q 1.000 79 0% 62 38.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases METTL1 4234 genome.wustl.edu 37 12 58162873 58162873 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005371.5 -1 reviewed p.R246H 1.000 165 0% 115 30.4% 19 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Methyltransf_4 MON2 23041 genome.wustl.edu 37 12 62902072 62902072 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015026.2 +1 validated p.E266* 1.000 186 0% 171 30.4% 2 0% - - - NULL MON2 23041 genome.wustl.edu 37 12 62902248 62902248 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015026.2 +1 validated p.F324L 1.000 115 0% 90 22.2% 2 50% probably_damaging(0.97) deleterious(0.01) deleterious(0.818) NULL MON2 23041 genome.wustl.edu 37 12 62954259 62954259 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000261188 +1 known p.L8R 0.228 69 0% 95 17.9% 0 - - - - NULL GRIP1 23426 genome.wustl.edu 37 12 66747253 66747253 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021150.3 -1 reviewed p.R983C 1.000 158 0% 165 30.9% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like GRIP1 23426 genome.wustl.edu 37 12 66856769 66856769 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021150.3 -1 reviewed p.D326G 1.000 234 0% 215 14.9% 10 10% benign(0.003) tolerated(0.15) neutral(0.241) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like CAND1 55832 genome.wustl.edu 37 12 67691386 67691386 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018448.3 +1 validated p.T231A 1.000 171 0% 199 22.6% 5 0% benign(0.253) tolerated(0.15) neutral(0.267) superfamily_ARM repeat SLC35E3 55508 genome.wustl.edu 37 12 69145849 69145849 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018656.2 +1 validated p.S184* 1.000 305 0% 265 15.5% 23 4.3% - - - HMMPfam_TPT BEST3 144453 genome.wustl.edu 37 12 70070720 70070720 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032735.2 -1 validated p.F281L 1.000 83 0% 71 9.9% 0 - probably_damaging(0.984) deleterious(0.01) deleterious(0.836) HMMPfam_Bestrophin PTPRB 5787 genome.wustl.edu 37 12 71003573 71003573 + Silent SNP A A G rs115721061 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002837.3 -1 reviewed p.L8 0.002 47 0% 26 19.2% 0 - - - - NULL PTPRR 5801 genome.wustl.edu 37 12 71139844 71139844 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002849.2 -1 reviewed p.R254I 0.378 244 0% 255 23.1% 1 0% possibly_damaging(0.778) deleterious(0) deleterious(0.736) NULL KCNC2 3747 genome.wustl.edu 37 12 75444577 75444577 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139137.2 -1 reviewed p.A403V 1.000 84 0% 69 24.6% 0 - possibly_damaging(0.694) deleterious(0.03) deleterious(0.613) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ZDHHC17 23390 genome.wustl.edu 37 12 77216188 77216188 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015336.2 +1 validated p.G258 0.855 154 0% 181 21% 2 50% - - - superfamily_Ankyrin repeat PAWR 5074 genome.wustl.edu 37 12 79990394 79990394 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002583.2 -1 reviewed p.R243Q 1.000 255 0% 251 12.4% 14 7.1% probably_damaging(0.997) tolerated(0.16) deleterious(0.526) NULL PPFIA2 8499 genome.wustl.edu 37 12 81833803 81833803 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003625.2 -1 reviewed p.S198Y 1.000 176 0% 176 35.2% 0 - probably_damaging(0.961) deleterious(0) deleterious(0.849) NULL SLC6A15 55117 genome.wustl.edu 37 12 85255421 85255421 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182767.4 -1 validated p.S728Y 1.000 127 0% 118 22.9% 0 - probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL SLC6A15 55117 genome.wustl.edu 37 12 85264428 85264428 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182767.4 -1 validated p.A442S 1.000 93 0% 90 11.1% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_SNF SLC6A15 55117 genome.wustl.edu 37 12 85279839 85279839 + Missense_Mutation SNP G G T rs143012212 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182767.4 -1 validated p.L100I 1.000 99 0% 104 12.5% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_SNF TSPAN19 144448 genome.wustl.edu 37 12 85411337 85411337 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001100917.1 -1 validated p.K164N 0.996 175 0% 182 33.5% 0 - possibly_damaging(0.473) tolerated(0.47) neutral(0.167) superfamily_Tetraspanin,HMMPfam_Tetraspannin ALX1 8092 genome.wustl.edu 37 12 85677526 85677526 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006982.2 +1 reviewed p.H135Y 1.000 152 0% 115 14.8% 0 - probably_damaging(0.99) tolerated(0.1) deleterious(0.728) HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like MGAT4C 25834 genome.wustl.edu 37 12 86373742 86373742 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013244.3 -1 validated p.F254L 1.000 127 0% 100 21% 0 - probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_Glyco_transf_54 C12orf50 160419 genome.wustl.edu 37 12 88379774 88379774 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152589.1 -1 predicted p.R327* 0.997 350 0.3% 299 21.7% 0 - - - - NULL C12orf50 160419 genome.wustl.edu 37 12 88380161 88380161 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152589.1 -1 predicted p.F284V 1.000 360 0.3% 333 30.9% 0 - benign(0.237) deleterious(0) neutral(0.468) NULL CEP290 80184 genome.wustl.edu 37 12 88465129 88465129 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025114.3 -1 reviewed p.E1985* 1.000 359 0% 388 32% 0 - - - - NULL C12orf12 196477 genome.wustl.edu 37 12 91347450 91347450 + Missense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152638.2 -1 predicted p.F357Y 0.012 381 0% 297 33% 0 - possibly_damaging(0.737) tolerated(0.44) neutral(0.282) NULL KERA 11081 genome.wustl.edu 37 12 91449875 91449875 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007035.3 -1 reviewed p.G62C 1.000 209 0% 193 34.2% 0 - probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058 KERA 11081 genome.wustl.edu 37 12 91450012 91450012 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007035.3 -1 reviewed p.D16G 0.007 105 0% 96 17.7% 0 - benign(0) tolerated(0.12) neutral(0.261) NULL PLXNC1 10154 genome.wustl.edu 37 12 94603399 94603399 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005761.1 +1 provisional p.E491D 0.000 306 0% 262 14.9% 0 - benign(0) tolerated(1) - HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold VEZT 55591 genome.wustl.edu 37 12 95681599 95681599 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017599.3 +1 validated p.V496 1.000 126 0% 111 12.6% 12 8.3% - - - NULL LTA4H 4048 genome.wustl.edu 37 12 96400166 96400166 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000895.1 -1 provisional p.S486A 0.007 306 0% 318 20.8% 36 27.7% benign(0) tolerated(0.32) neutral(0.024) HMMPfam_Leuk-A4-hydro_C,superfamily_ARM repeat LOC121456 121456 genome.wustl.edu 37 12 98850440 98850440 + RNA SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_016411.2 -1 model NULL 1.000 43 0% 32 34.4% 0 - - - - - SLC25A3 5250 genome.wustl.edu 37 12 98989504 98989504 + Splice_Site SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002635.3 +1 reviewed e2-1 1.000 367 0% 298 21.1% 3 33.3% - - - - IKBIP 121457 genome.wustl.edu 37 12 99007832 99007832 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_201612.1 -1 provisional p.S195Y 0.972 77 0% 122 32.8% 0 - possibly_damaging(0.887) deleterious(0.02) deleterious(0.730) NULL ANKS1B 56899 genome.wustl.edu 37 12 99192773 99192773 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152788.3 -1 validated p.S1069Y 1.000 230 0% 295 18.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like SLC5A8 160728 genome.wustl.edu 37 12 101560318 101560318 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145913.3 -1 validated p.E494* 0.998 321 0% 253 12.6% 0 - - - - NULL UTP20 27340 genome.wustl.edu 37 12 101713384 101713384 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014503.2 +1 validated p.E934K 1.000 175 0% 200 15.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DRIM,superfamily_ARM repeat UTP20 27340 genome.wustl.edu 37 12 101745933 101745933 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014503.2 +1 validated p.V1662A 1.000 362 0% 307 29% 8 25% benign(0.164) tolerated(0.28) neutral(0.046) superfamily_ARM repeat GNPTAB 79158 genome.wustl.edu 37 12 102158935 102158935 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024312.4 -1 reviewed p.R587Q 1.000 404 0% 341 30.5% 25 28% probably_damaging(1) deleterious(0) deleterious(0.945) NULL STAB2 55576 genome.wustl.edu 37 12 104084282 104084282 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017564.9 +1 reviewed p.Q1088P 1.000 253 0.4% 221 27.1% 0 - benign(0) tolerated(0.15) neutral(0.241) HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1 NUAK1 9891 genome.wustl.edu 37 12 106464614 106464614 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014840.2 -1 validated p.D257A 1.000 159 0% 137 18.2% 2 0% probably_damaging(0.955) deleterious(0) deleterious(0.843) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SELPLG 6404 genome.wustl.edu 37 12 109017364 109017364 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003006.3 -1 reviewed p.E230D 0.001 716 0.1% 600 21.5% 108 8.3% unknown(0) tolerated(0.28) - NULL SSH1 54434 genome.wustl.edu 37 12 109194558 109194558 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018984.3 -1 validated p.A382 0.059 305 0% 276 27.9% 0 - - - - HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II ACACB 32 genome.wustl.edu 37 12 109577476 109577476 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001093.3 +1 reviewed p.R89I 0.000 56 0% 76 34.2% 0 - possibly_damaging(0.882) deleterious(0) deleterious(0.789) NULL MYO1H 283446 genome.wustl.edu 37 12 109848566 109848566 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001101421.3 +1 provisional p.S462Y 1.000 265 0% 240 30.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases ATP2A2 488 genome.wustl.edu 37 12 110765494 110765494 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_170665.3 +1 reviewed p.F256C 1.000 127 0% 117 31.6% 93 51.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M OAS2 4939 genome.wustl.edu 37 12 113425107 113425107 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016817.2 +1 reviewed p.A148T 0.503 111 0% 88 22.7% 5 0% benign(0.049) tolerated(0.12) neutral(0.264) superfamily_Nucleotidyltransferase DTX1 1840 genome.wustl.edu 37 12 113531866 113531866 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004416.2 +1 reviewed p.R397* 0.909 53 0% 47 36.2% 9 0% - - - superfamily_SSF57850 LHX5 64211 genome.wustl.edu 37 12 113901319 113901319 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022363.2 -1 reviewed p.F295 1.000 35 0% 26 26.9% 0 - - - - NULL ENSG00000247019 0 genome.wustl.edu 37 12 116972384 116972384 + RNA SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000502085 -1 novel NULL 1.000 103 0% 76 31.6% 3 33.3% - - - - CIT 11113 genome.wustl.edu 37 12 120260768 120260768 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007174.1 -1 validated p.K323Q 1.000 114 0% 119 25.2% 2 0% possibly_damaging(0.925) tolerated(0.07) deleterious(0.693) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase POP5 51367 genome.wustl.edu 37 12 121017724 121017724 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015918.3 -1 validated p.R56* 1.000 155 0% 118 15.3% 51 11.7% - - - HMMPfam_RNase_P_Rpp14 SPPL3 121665 genome.wustl.edu 37 12 121221532 121221532 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139015.3 -1 validated p.F112V 1.000 220 0% 278 12.6% 47 10.6% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00730,HMMPfam_Peptidase_A22B RSRC2 65117 genome.wustl.edu 37 12 122990215 122990215 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_023012.4 -1 validated p.E388D 0.999 252 0% 245 30.2% 48 43.7% benign(0.029) tolerated(0.21) neutral(0.045) NULL PITPNM2 57605 genome.wustl.edu 37 12 123482002 123482002 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020845.2 -1 validated p.D448N 0.999 47 0% 39 38.5% 13 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DNAH10 196385 genome.wustl.edu 37 12 124317763 124317763 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207437.3 +1 validated p.E1432K 0.996 137 0% 157 35% 1 100% possibly_damaging(0.941) deleterious(0.02) deleterious(0.770) HMMPfam_DHC_N2 DNAH10 196385 genome.wustl.edu 37 12 124323139 124323139 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207437.3 +1 validated p.R1562I 0.994 144 0.7% 122 15.6% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DHC_N2 DNAH10 196385 genome.wustl.edu 37 12 124325905 124325905 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207437.3 +1 validated p.G1607S 0.952 232 0% 199 21.6% 1 0% benign(0.001) tolerated(0.53) neutral(0.007) HMMPfam_DHC_N2 CCDC92 80212 genome.wustl.edu 37 12 124427302 124427302 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025140.1 -1 provisional p.S71L 0.962 285 0% 270 23.3% 17 64.7% benign(0.167) tolerated(0.41) neutral(0.030) NULL EP400 57634 genome.wustl.edu 37 12 132498056 132498056 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015409.3 +1 validated p.I1210 0.339 66 0% 63 42.9% 13 53.8% - - - HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540 DDX51 317781 genome.wustl.edu 37 12 132626725 132626725 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175066.3 -1 validated p.S276L 0.000 31 0% 30 40% 16 37.5% benign(0.124) tolerated(0.25) neutral(0.047) HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540 POLE 5426 genome.wustl.edu 37 12 133219475 133219475 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006231.2 -1 validated p.F1553 0.992 94 0% 105 26.7% 10 50% - - - HMMPfam_DUF1744 POLE 5426 genome.wustl.edu 37 12 133234008 133234008 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006231.2 -1 validated p.D1129G 1.000 64 0% 61 32.8% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DNA_pol_B,superfamily_SSF56672 POLE 5426 genome.wustl.edu 37 12 133253184 133253184 + Missense_Mutation SNP G G C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006231.2 -1 validated p.P286R 1.000 117 0% 114 36% 11 63.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold ZNF268 10795 genome.wustl.edu 37 12 133780671 133780671 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003415.2 +1 validated p.R800I 1.000 150 0% 96 17.7% 5 60% probably_damaging(0.999) tolerated(0.06) deleterious(0.813) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers GJA3 2700 genome.wustl.edu 37 13 20717131 20717131 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021954.3 -1 reviewed p.I99 0.446 168 0% 95 38.9% 0 - - - - HMMPfam_Connexin SACS 26278 genome.wustl.edu 37 13 23904986 23904986 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014363.4 -1 reviewed p.E4343D 1.000 62 0% 82 14.6% 0 - benign(0) tolerated(1) - superfamily_Chaperone J-domain SACS 26278 genome.wustl.edu 37 13 23907634 23907634 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014363.4 -1 reviewed p.E3461* 1.000 209 0% 169 14.2% 0 - - - - NULL SACS 26278 genome.wustl.edu 37 13 23909492 23909492 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014363.4 -1 reviewed p.K2841N 1.000 86 0% 126 33.3% 0 - possibly_damaging(0.914) tolerated(0.23) neutral(0.407) NULL SACS 26278 genome.wustl.edu 37 13 23928797 23928797 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014363.4 -1 reviewed p.E652* 0.938 57 0% 63 14.3% 3 66.6% - - - NULL PABPC3 5042 genome.wustl.edu 37 13 25670924 25670924 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030979.2 +1 validated p.K196N 1.000 308 0% 306 17.6% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD ATP8A2 51761 genome.wustl.edu 37 13 26125619 26125619 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016529.4 +1 validated p.K345N 0.001 233 0% 203 18.7% 0 - benign(0.119) tolerated(0.24) neutral(0.047) NULL FLT1 2321 genome.wustl.edu 37 13 28893672 28893672 + Splice_Site SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002019.4 -1 reviewed e24-1 1.000 115 0% 109 31.2% 0 - - - - - FLT1 2321 genome.wustl.edu 37 13 29001303 29001303 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002019.4 -1 reviewed p.E477K 0.678 234 0.4% 195 17.9% 6 0% benign(0) tolerated(1) - HMMSmart_SM00409,superfamily_Immunoglobulin MTUS2 23281 genome.wustl.edu 37 13 29600650 29600650 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001033602.2 +1 validated p.S615 0.911 48 0% 40 30% 0 - - - - NULL MTUS2 23281 genome.wustl.edu 37 13 29933428 29933428 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001033602.2 +1 validated p.R989* 0.853 38 0% 24 16.7% 0 - - - - NULL ALOX5AP 241 genome.wustl.edu 37 13 31338232 31338232 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001629.2 +1 reviewed p.L159F 0.998 441 0% 345 38.3% 120 0.8% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL HSPH1 10808 genome.wustl.edu 37 13 31712697 31712697 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006644.2 -1 validated p.K739N 0.999 248 0% 216 29.6% 20 15% benign(0.269) deleterious(0.02) neutral(0.412) superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain FRY 10129 genome.wustl.edu 37 13 32709304 32709304 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_023037.2 +1 validated p.R354Q 1.000 83 0% 84 31% 1 0% possibly_damaging(0.938) deleterious(0.01) deleterious(0.789) NULL BRCA2 675 genome.wustl.edu 37 13 32930610 32930610 + Missense_Mutation SNP G G A rs80358973 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000059.3 +1 reviewed p.R2494Q 1.000 143 0% 138 29.7% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical PDS5B 23047 genome.wustl.edu 37 13 33316753 33316753 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015032.3 +1 reviewed p.R834* 1.000 305 0.3% 254 13.8% 2 50% - - - superfamily_ARM repeat KL 9365 genome.wustl.edu 37 13 33628019 33628019 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004795.3 +1 reviewed p.S312N 0.003 232 0% 198 24.2% 0 - benign(0) tolerated(1) - HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases STARD13 90627 genome.wustl.edu 37 13 33704363 33704363 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178006.3 -1 validated p.R151C 1.000 54 0% 39 28.2% 8 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL NBEA 26960 genome.wustl.edu 37 13 35926411 35926411 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015678.4 +1 validated p.L2044I 0.973 149 0% 125 18.4% 0 - benign(0.001) tolerated(0.45) neutral(0.012) HMMPfam_DUF1088,superfamily_ARM repeat TRPC4 7223 genome.wustl.edu 37 13 38320192 38320192 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003306.1 -1 validated p.R260I 0.977 192 0% 135 24.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FREM2 341640 genome.wustl.edu 37 13 39262423 39262423 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207361.4 +1 reviewed p.E314D 1.000 58 0% 29 31% 2 100% benign(0.285) tolerated(0.26) neutral(0.121) NULL COG6 57511 genome.wustl.edu 37 13 40233628 40233628 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020751.2 +1 reviewed p.F94S 1.000 159 0% 181 29.3% 1 100% probably_damaging(0.986) tolerated(0.25) deleterious(0.471) HMMPfam_COG6 ENSG00000207458 0 genome.wustl.edu 37 13 40800998 40800998 + RNA SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000384727 +1 novel NULL 0.149 245 0% 237 17.3% 0 - - - - - AKAP11 11215 genome.wustl.edu 37 13 42874080 42874080 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016248.2 +1 reviewed p.K400Q 0.997 103 0% 79 10.1% 1 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL COG3 83548 genome.wustl.edu 37 13 46039324 46039324 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031431.2 +1 reviewed p.E51D 1.000 30 0% 19 31.6% 22 59% benign(0.003) tolerated(0.41) neutral(0.015) NULL FAM194B 220081 genome.wustl.edu 37 13 46149043 46149043 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182542.2 -1 predicted p.E328D 0.000 298 0% 291 26.8% 0 - possibly_damaging(0.945) deleterious(0) deleterious(0.834) NULL ZC3H13 23091 genome.wustl.edu 37 13 46549439 46549439 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015070.3 -1 validated p.G816E 0.523 471 0% 431 21.6% 1 100% unknown(0) tolerated(1) - NULL HTR2A 3356 genome.wustl.edu 37 13 47409732 47409732 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000621.3 -1 reviewed p.S219L 0.554 55 0% 47 27.7% 0 - benign(0.208) tolerated(0.19) neutral(0.070) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like FAM124A 220108 genome.wustl.edu 37 13 51855062 51855062 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145019.2 +1 predicted p.F473L 1.000 42 0% 32 15.6% 0 - benign(0.189) tolerated(0.48) neutral(0.028) NULL PCDH17 27253 genome.wustl.edu 37 13 58208243 58208243 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040429.2 +1 reviewed p.I521 1.000 17 0% 25 36% 2 0% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like DIAPH3 81624 genome.wustl.edu 37 13 60590209 60590209 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042517.1 -1 validated p.K233Q 0.997 294 0% 247 19.4% 0 - benign(0.011) tolerated(0.37) neutral(0.019) HMMPfam_Drf_GBD PCDH9 5101 genome.wustl.edu 37 13 67801299 67801299 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_203487.2 -1 reviewed p.S425Y 1.000 137 0% 117 23.1% 1 100% possibly_damaging(0.625) deleterious(0.01) deleterious(0.624) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDH9 5101 genome.wustl.edu 37 13 67801427 67801427 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_203487.2 -1 reviewed p.K382N 1.000 172 0% 135 17% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Cadherin,superfamily_Cadherin-like MYCBP2 23077 genome.wustl.edu 37 13 77745695 77745695 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015057.4 -1 validated p.A1871V 1.000 254 0% 215 14.4% 1 0% probably_damaging(0.99) tolerated(0.53) neutral(0.449) NULL SCEL 8796 genome.wustl.edu 37 13 78192177 78192177 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144777.2 +1 validated p.A537V 0.997 234 0% 172 21.5% 0 - possibly_damaging(0.8) deleterious(0.01) deleterious(0.707) NULL SLITRK6 84189 genome.wustl.edu 37 13 86370267 86370267 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032229.2 -1 validated p.I126S 1.000 169 0% 190 18.9% 0 - benign(0.004) deleterious(0.01) neutral(0.406) HMMSmart_SM00369,superfamily_L domain-like GPC5 2262 genome.wustl.edu 37 13 92101156 92101156 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004466.4 +1 reviewed p.R102Q 0.997 152 0% 150 20% 0 - benign(0.041) tolerated(0.62) neutral(0.007) HMMPfam_Glypican ABCC4 10257 genome.wustl.edu 37 13 95899262 95899262 + Silent SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005845.3 -1 reviewed p.S91 0.278 227 0% 205 17.1% 0 - - - - superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain UGGT2 55757 genome.wustl.edu 37 13 96489364 96489364 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020121.3 -1 validated p.K1459 0.717 367 0% 361 31.6% 5 40% - - - superfamily_Nucleotide-diphospho-sugar transferases IPO5 3843 genome.wustl.edu 37 13 98668014 98668014 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000469360 +1 known p.S826L 0.964 251 0% 220 45.5% 52 48% - - - superfamily_ARM repeat ZIC5 85416 genome.wustl.edu 37 13 100617631 100617631 + Nonstop_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033132.3 -1 validated p.*664Y 0.997 53 0% 59 22% 0 - - - - NULL NALCN 259232 genome.wustl.edu 37 13 101797226 101797226 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052867.2 -1 validated p.A621T 1.000 290 0% 283 32.2% 0 - benign(0.014) tolerated(0.56) neutral(0.007) NULL TPP2 7174 genome.wustl.edu 37 13 103292684 103292684 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003291.2 +1 reviewed p.R660* 1.000 327 0% 274 21.9% 13 15.3% - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103383855 103383855 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.K6246E 0.000 175 0% 176 31.2% 0 - unknown(0) - - NULL LOC643677 643677 genome.wustl.edu 37 13 103385602 103385602 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.I5663 0.000 282 0% 256 31.2% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103392957 103392957 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.E3293* 0.000 295 0% 261 26.8% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103394925 103394925 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.D2637Y 0.001 148 0% 137 23.4% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103397061 103397061 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.E1925* 0.001 164 0% 170 18.2% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103397339 103397339 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.S1832* 0.018 393 0% 358 17.6% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103397417 103397417 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.R1806I 0.000 357 0% 348 20.1% 0 - - - - NULL LOC643677 643677 genome.wustl.edu 37 13 103398607 103398607 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002344085.1 -1 model p.Q1409 0.000 76 0% 84 29.8% 0 - - - - NULL TNFSF13B 10673 genome.wustl.edu 37 13 108955898 108955898 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006573.3 +1 reviewed p.R231* 1.000 294 0% 276 32.2% 6 33.3% - - - HMMPfam_TNF,superfamily_TNF-like MYO16 23026 genome.wustl.edu 37 13 109379811 109379811 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015011.1 +1 validated p.F107L 1.000 295 0% 234 21.4% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat MYO16 23026 genome.wustl.edu 37 13 109661329 109661329 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015011.1 +1 validated p.E821K 1.000 198 0% 168 29.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases F10 2159 genome.wustl.edu 37 13 113793763 113793763 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000504.3 +1 reviewed p.E117K 0.074 204 0% 162 33.3% 0 - benign(0.072) tolerated(0.05) neutral(0.350) HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2 GRTP1 79774 genome.wustl.edu 37 13 113979998 113979998 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024719.2 -1 validated p.M300T 0.374 111 0% 103 12.6% 3 33.3% benign(0) tolerated(0.49) neutral(0.011) superfamily_Ypt/Rab-GAP domain of gyp1p DCUN1D2 55208 genome.wustl.edu 37 13 114128488 114128488 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001014283.1 -1 validated p.F157L 1.000 235 0% 180 31.1% 1 100% benign(0.004) tolerated(0.53) neutral(0.007) HMMPfam_DUF298 OR4M1 441670 genome.wustl.edu 37 14 20248736 20248736 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005500.1 +1 provisional p.F85L 0.995 713 0% 579 20.2% 0 - benign(0.17) tolerated(1) neutral(0.015) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR4M1 441670 genome.wustl.edu 37 14 20248893 20248893 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005500.1 +1 provisional p.R138* 0.156 566 0% 452 19.7% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like RNASE7 84659 genome.wustl.edu 37 14 21511325 21511325 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032572.3 +1 validated p.I58M 0.178 251 0% 176 29% 0 - benign(0.42) deleterious(0) deleterious(0.581) HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like SUPT16H 11198 genome.wustl.edu 37 14 21826541 21826541 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007192.3 -1 reviewed p.F783V 1.000 151 0% 167 19.8% 9 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SUPT16H 11198 genome.wustl.edu 37 14 21837508 21837508 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007192.3 -1 reviewed p.R213* 1.000 167 0% 150 31.3% 10 0% - - - HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core CDH24 64403 genome.wustl.edu 37 14 23523830 23523830 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022478.3 -1 validated p.F223L 0.991 91 0% 80 20% 10 50% probably_damaging(0.953) deleterious(0.02) deleterious(0.780) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CMTM5 116173 genome.wustl.edu 37 14 23847686 23847686 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138460.2 +1 reviewed p.F85 0.416 284 0% 191 34.6% 0 - - - - HMMPfam_MARVEL AP1G2 8906 genome.wustl.edu 37 14 24035773 24035773 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003917.2 -1 reviewed p.K109N 1.000 228 0% 137 24.1% 80 46.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Adaptin_N,superfamily_ARM-type_fold NYNRIN 57523 genome.wustl.edu 37 14 24880576 24880576 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025081.2 +1 validated p.T854 0.790 205 0% 178 29.8% 17 23.5% - - - NULL CMA1 1215 genome.wustl.edu 37 14 24976573 24976573 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001836.2 -1 reviewed p.H66Q 0.996 121 0% 115 32.2% 0 - possibly_damaging(0.887) deleterious(0.02) deleterious(0.730) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS GZMH 2999 genome.wustl.edu 37 14 25075921 25075921 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033423.3 -1 provisional p.D210G 0.000 118 0% 115 28.7% 0 - benign(0) tolerated(1) - HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys SCFD1 23256 genome.wustl.edu 37 14 31139577 31139577 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016106.2 +1 validated p.K324T 1.000 80 0% 110 26.4% 2 50% possibly_damaging(0.939) tolerated(0.16) neutral(0.444) HMMPfam_Sec1,superfamily_Sec1-like HECTD1 25831 genome.wustl.edu 37 14 31578713 31578713 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015382.2 -1 validated p.R2124* 0.998 150 0% 141 29.8% 31 19.3% - - - NULL HECTD1 25831 genome.wustl.edu 37 14 31609180 31609180 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015382.2 -1 validated p.R966Q 1.000 255 0.4% 239 18% 5 0% possibly_damaging(0.67) tolerated(0.51) neutral(0.246) NULL FAM177A1 283635 genome.wustl.edu 37 14 35550401 35550401 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173607.3 +1 validated p.E226D 0.994 156 0% 190 20% 8 25% possibly_damaging(0.857) tolerated(0.22) neutral(0.373) NULL RALGAPA1 253959 genome.wustl.edu 37 14 36154179 36154179 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_194301.2 -1 provisional p.S911L 1.000 177 0% 166 31.9% 4 50% probably_damaging(0.99) deleterious(0.01) deleterious(0.847) NULL BRMS1L 84312 genome.wustl.edu 37 14 36334963 36334963 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032352.3 +1 reviewed p.T241 0.988 270 0% 233 22.7% 3 33.3% - - - NULL SEC23A 10484 genome.wustl.edu 37 14 39560823 39560823 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006364.2 -1 reviewed p.S154* 1.000 190 0.5% 227 27.8% 2 0% - - - HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995 LRFN5 145581 genome.wustl.edu 37 14 42355983 42355983 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152447.3 +1 validated p.R52I 1.000 140 0% 130 29.2% 0 - probably_damaging(0.971) deleterious(0) deleterious(0.857) HMMSmart_LRRNT,superfamily_SSF52058 LRFN5 145581 genome.wustl.edu 37 14 42356666 42356666 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152447.3 +1 validated p.E280* 1.000 309 0% 251 20.7% 0 - - - - HMMSmart_LRRCT,superfamily_SSF48726,superfamily_SSF52058 MDGA2 161357 genome.wustl.edu 37 14 47351331 47351331 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001113498.1 -1 validated p.K709Q 1.000 129 0% 156 22.4% 0 - possibly_damaging(0.608) tolerated(0.13) neutral(0.463) superfamily_FN_III-like CDKL1 8814 genome.wustl.edu 37 14 50799072 50799072 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004196.3 -1 reviewed p.E293K 1.000 548 0% 503 22.7% 1 0% possibly_damaging(0.515) tolerated(0.21) neutral(0.217) superfamily_Protein kinase-like (PK-like) NIN 51199 genome.wustl.edu 37 14 51225017 51225017 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020921.3 -1 reviewed p.E911K 0.991 234 0% 186 36.6% 4 25% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ARID4A 5926 genome.wustl.edu 37 14 58831131 58831131 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002892.3 +1 reviewed p.K775T 0.997 38 0% 68 14.7% 0 - probably_damaging(1) tolerated(0.08) deleterious(0.800) NULL ARID4A 5926 genome.wustl.edu 37 14 58832908 58832908 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002892.3 +1 reviewed p.P1161 0.681 101 0% 86 11.6% 1 0% - - - NULL C14orf38 729665 genome.wustl.edu 37 14 59977503 59977503 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000281581 -1 known p.E722D 0.005 385 0% 291 26.8% 0 - benign(0.008) tolerated(0.38) neutral(0.018) NULL SIX1 6495 genome.wustl.edu 37 14 61113285 61113285 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005982.3 -1 reviewed p.E191K 1.000 129 0% 143 21% 2 0% benign(0.35) deleterious(0) deleterious(0.555) superfamily_Homeodomain-like SLC38A6 145389 genome.wustl.edu 37 14 61512128 61512128 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153811.2 +1 validated p.Y270C 1.000 408 0% 368 21.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Aa_trans SYT16 83851 genome.wustl.edu 37 14 62462909 62462909 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031914.2 +1 validated p.D58Y 0.909 134 0% 119 33.6% 0 - probably_damaging(0.96) deleterious(0) deleterious(0.848) NULL KCNH5 27133 genome.wustl.edu 37 14 63316376 63316376 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_139318.3 -1 reviewed p.E522K 1.000 186 0% 181 15.5% 0 - benign(0.123) tolerated(0.28) neutral(0.042) superfamily_cAMP-binding domain-like RHOJ 57381 genome.wustl.edu 37 14 63747757 63747757 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020663.3 +1 provisional p.V102 0.749 221 0% 164 31.1% 11 0% - - - HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases SYNE2 23224 genome.wustl.edu 37 14 64483209 64483209 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182914.2 +1 reviewed p.E1583* 1.000 52 0% 67 38.8% 0 - - - - superfamily_Spectrin SYNE2 23224 genome.wustl.edu 37 14 64518296 64518296 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182914.2 +1 reviewed p.T2555 0.006 89 0% 102 33.3% 0 - - - - NULL ZBTB1 22890 genome.wustl.edu 37 14 64990034 64990034 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001123329.1 +1 validated p.K604 1.000 97 0% 86 10.5% 16 18.7% - - - superfamily_SSF57667 ENSG00000249603 0 genome.wustl.edu 37 14 65067009 65067009 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000509438 +1 novel NULL 1.000 152 0% 127 24.4% 2 0% - - - - SPTB 6710 genome.wustl.edu 37 14 65246548 65246548 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001024858.2 -1 reviewed p.I1456 0.885 84 0% 93 23.7% 0 - - - - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin SPTB 6710 genome.wustl.edu 37 14 65250971 65250971 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001024858.2 -1 reviewed p.I1332 0.003 258 0.4% 176 33% 0 - - - - HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin GPHN 10243 genome.wustl.edu 37 14 67579744 67579744 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020806.4 +1 reviewed p.G494 1.000 147 0% 136 16.9% 6 50% - - - HMMPfam_MoeA_N,superfamily_MoeA_N ATP6V1D 51382 genome.wustl.edu 37 14 67819671 67819671 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015994.2 -1 reviewed p.R43Q 1.000 240 0.4% 267 31.8% 13 30.7% probably_damaging(0.996) tolerated(0.19) deleterious(0.511) HMMPfam_ATP-synt_D VTI1B 10490 genome.wustl.edu 37 14 68126569 68126569 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006370.2 -1 validated p.R82Q 1.000 188 0% 130 29.2% 103 40.7% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_V-SNARE SLC8A3 6547 genome.wustl.edu 37 14 70518724 70518724 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_183002.1 -1 reviewed p.E672K 1.000 403 0% 386 30.1% 0 - possibly_damaging(0.828) deleterious(0) deleterious(0.758) NULL ADAM21 8747 genome.wustl.edu 37 14 70925767 70925767 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003813.2 +1 reviewed p.I517M 0.973 42 0% 36 22.2% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_ADAM_CR,HMMSmart_SM00608 PCNX 22990 genome.wustl.edu 37 14 71542981 71542981 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014982.2 +1 validated p.R1728C 0.992 144 0.7% 130 29.2% 16 25% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL PSEN1 5663 genome.wustl.edu 37 14 73653578 73653578 + Silent SNP T T G rs63750879 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000021.3 +1 reviewed p.L166 0.997 654 0% 668 19% 16 18.7% - - - HMMPfam_Presenilin,HMMSmart_SM00730 PAPLN 89932 genome.wustl.edu 37 14 73731278 73731278 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000216658 +1 known p.S947Y 0.183 62 0% 32 46.9% 1 100% - - - NULL NUMB 8650 genome.wustl.edu 37 14 73743299 73743299 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005743.1 -1 reviewed p.E648A 1.000 158 0% 138 15.2% 33 42.4% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL KIAA0317 9870 genome.wustl.edu 37 14 75143373 75143373 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039479.1 -1 validated p.Q188 1.000 284 0% 228 35.1% 5 60% - - - PatternScan_RCC1_2 MLH3 27030 genome.wustl.edu 37 14 75515730 75515730 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040108.1 -1 reviewed p.R210Q 1.000 58 0% 48 20.8% 1 0% unknown(0) deleterious(0.02) - superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Ribosomal protein S5 domain 2-like C14orf118 55668 genome.wustl.edu 37 14 76638294 76638294 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017926.2 +1 validated p.R279I 1.000 157 0% 158 18.4% 6 50% probably_damaging(0.959) tolerated(0.12) deleterious(0.663) NULL ANGEL1 23357 genome.wustl.edu 37 14 77255579 77255579 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015305.3 -1 validated p.A669T 0.997 81 0% 60 13.3% 5 0% benign(0.004) tolerated(0.38) neutral(0.018) NULL TMEM63C 57156 genome.wustl.edu 37 14 77685169 77685169 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020431.2 +1 validated p.P5S 0.000 66 1.5% 26 23.1% 1 100% possibly_damaging(0.771) - - NULL TMEM63C 57156 genome.wustl.edu 37 14 77699815 77699815 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020431.2 +1 validated p.R172W 0.997 214 0% 207 11.6% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ADCK1 57143 genome.wustl.edu 37 14 78325603 78325603 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020421.3 +1 validated p.R135Q 0.993 31 0% 18 33.3% 7 42.8% possibly_damaging(0.687) tolerated(0.05) deleterious(0.591) superfamily_Kinase_like NRXN3 9369 genome.wustl.edu 37 14 80130131 80130131 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004796.4 +1 reviewed p.K779T 1.000 169 0% 142 12% 6 33.3% benign(0.108) tolerated(0.33) neutral(0.033) HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2 CEP128 145508 genome.wustl.edu 37 14 81371212 81371212 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152446.3 -1 validated p.R142Q 0.017 311 0% 316 12.3% 1 0% benign(0.152) deleterious(0.03) neutral(0.378) NULL C14orf102 55051 genome.wustl.edu 37 14 90769176 90769176 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017970.2 -1 validated p.S433 0.002 101 0% 92 16.3% 0 - - - - HMMPfam_DUF1740,superfamily_Prenyl_trans C14orf102 55051 genome.wustl.edu 37 14 90778779 90778779 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017970.2 -1 validated p.A172 0.241 160 0% 177 11.3% 3 0% - - - NULL TRIP11 9321 genome.wustl.edu 37 14 92470836 92470836 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004239.3 -1 reviewed p.L1162V 0.999 125 0% 116 31.9% 2 50% probably_damaging(1) tolerated(0.05) deleterious(0.845) NULL BTBD7 55727 genome.wustl.edu 37 14 93760918 93760918 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001002860.2 -1 validated p.E150* 1.000 67 0% 68 19.1% 2 0% - - - HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB UNC79 57578 genome.wustl.edu 37 14 94044269 94044269 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020818.3 +1 validated p.R588W 1.000 294 0.3% 215 35.3% 0 - probably_damaging(0.985) deleterious(0.03) deleterious(0.796) NULL ASB2 51676 genome.wustl.edu 37 14 94420665 94420665 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016150.3 -1 reviewed p.R111Q 0.058 54 0% 41 26.8% 5 0% benign(0.014) tolerated(0.4) neutral(0.017) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat DDX24 57062 genome.wustl.edu 37 14 94545740 94545740 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020414.3 -1 reviewed p.E117* 0.127 497 0% 432 21.5% 11 0% - - - NULL PPP4R4 57718 genome.wustl.edu 37 14 94708150 94708150 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_058237.1 +1 reviewed p.L334F 1.000 144 0% 200 16.5% 0 - benign(0.099) tolerated(0.1) neutral(0.294) superfamily_ARM repeat CLMN 79789 genome.wustl.edu 37 14 95660901 95660901 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024734.3 -1 validated p.R914Q 1.000 215 0% 180 35% 31 41.9% probably_damaging(1) deleterious(0) deleterious(0.945) NULL AK7 122481 genome.wustl.edu 37 14 96922741 96922741 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152327.2 +1 validated p.E386* 0.001 370 0% 262 31.3% 7 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases VRK1 7443 genome.wustl.edu 37 14 97342379 97342379 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003384.2 +1 reviewed p.E361* 0.817 176 0% 156 17.3% 1 0% - - - NULL BCL11B 64919 genome.wustl.edu 37 14 99724144 99724144 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138576.2 -1 reviewed p.E31K 1.000 44 0% 36 19.4% 1 0% benign(0.03) deleterious(0.03) neutral(0.366) NULL ZNF839 55778 genome.wustl.edu 37 14 102792358 102792358 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018335.3 +1 validated p.E109* 0.006 74 0% 71 11.3% 0 - - - - NULL CINP 51550 genome.wustl.edu 37 14 102825868 102825868 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032630.2 -1 reviewed p.K22Q 1.000 202 0% 213 34.7% 6 50% probably_damaging(1) tolerated(0.11) deleterious(0.772) NULL KLC1 3831 genome.wustl.edu 37 14 104136524 104136524 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001130107.1 +1 reviewed p.A297 0.001 242 0% 223 17.9% 21 23.8% - - - HMMPfam_TPR_1,PatternScan_KINESIN_LIGHT,HMMSmart_SM00028,superfamily_TPR-like AHNAK2 113146 genome.wustl.edu 37 14 105413989 105413989 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138420.2 -1 validated p.A2600V 0.000 174 0% 209 23.9% 1 0% unknown(0) tolerated(0.44) - NULL IGHG2 3501 genome.wustl.edu 37 14 106109781 106109781 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390545 -1 known p.L247R 0.799 269 0% 228 17.1% 2842 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726 IGHV1-18 28468 genome.wustl.edu 37 14 106641590 106641590 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390605 -1 known p.D108 0.943 289 0.3% 196 19.4% 252 0% - - - HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726 IGHV7-81 28378 genome.wustl.edu 37 14 107282918 107282918 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000390639 -1 known p.G75 0.000 203 0% 124 30.6% 1 100% - - - HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin GOLGA6L6 727832 genome.wustl.edu 37 15 20739676 20739676 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145004.1 -1 inferred p.R692* 0.819 68 0% 41 12.2% 1 0% - - - NULL TUBGCP5 114791 genome.wustl.edu 37 15 22840328 22840328 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001102610.1 +1 validated p.N132D 0.994 223 0% 203 19.7% 0 - benign(0) tolerated(0.62) neutral(0.004) NULL LOC283683 283683 genome.wustl.edu 37 15 23128327 23128327 + RNA SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_015696.3 -1 model NULL 0.007 22 0% 44 38.6% 0 - - - - - UBE3A 7337 genome.wustl.edu 37 15 25615811 25615811 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000462.2 -1 reviewed p.I507L 1.000 167 0% 117 12.8% 16 0% benign(0) tolerated(0.68) neutral(0.002) NULL GABRA5 2558 genome.wustl.edu 37 15 27128356 27128356 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000810.3 +1 reviewed p.F84 0.950 77 0% 38 31.6% 0 - - - - HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD MTMR10 54893 genome.wustl.edu 37 15 31233730 31233730 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017762.2 -1 validated p.K759N 0.969 129 0% 99 36.4% 1 100% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL RYR3 6263 genome.wustl.edu 37 15 33895387 33895387 + Silent SNP C C T rs193106812 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001036.3 +1 validated p.F662 0.995 99 0% 79 32.9% 0 - - - - HMMPfam_SPRY,HMMSmart_SM00449 RYR3 6263 genome.wustl.edu 37 15 33988673 33988673 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001036.3 +1 validated p.L2039F 1.000 267 0% 210 20% 0 - probably_damaging(0.991) - - HMMPfam_RYDR_ITPR RYR3 6263 genome.wustl.edu 37 15 34065799 34065799 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001036.3 +1 validated p.K3040N 1.000 335 0% 276 31.9% 0 - probably_damaging(0.955) - - NULL RYR3 6263 genome.wustl.edu 37 15 34123273 34123273 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001036.3 +1 validated p.S3815Y 1.000 197 0% 165 31.5% 0 - probably_damaging(0.996) - - HMMPfam_RIH_assoc CHRM5 1133 genome.wustl.edu 37 15 34355586 34355586 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012125.3 +1 validated p.R223Q 1.000 123 0% 109 28.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 SLC12A6 9990 genome.wustl.edu 37 15 34538065 34538065 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133647.1 -1 reviewed p.F551 1.000 67 0% 67 17.9% 7 28.5% - - - HMMPfam_AA_permease SLC12A6 9990 genome.wustl.edu 37 15 34553178 34553178 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_133647.1 -1 reviewed p.S120 1.000 122 0% 180 17.8% 1 0% - - - NULL AQR 9716 genome.wustl.edu 37 15 35166938 35166938 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014691.2 -1 validated p.R1122H 1.000 216 0% 173 30.6% 20 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52540 AQR 9716 genome.wustl.edu 37 15 35178830 35178830 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014691.2 -1 validated p.R905I 1.000 179 0.6% 199 14.1% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF52540 ZNF770 54989 genome.wustl.edu 37 15 35274690 35274690 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014106.2 -1 validated p.A316T 0.996 75 0% 87 12.6% 1 0% benign(0.001) tolerated(0.41) neutral(0.015) NULL TMCO5A 145942 genome.wustl.edu 37 15 38228627 38228627 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152453.2 +1 provisional p.L35I 0.989 164 0% 125 26.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL BUB1B 701 genome.wustl.edu 37 15 40505586 40505586 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001211.5 +1 reviewed p.I863M 0.921 267 0% 242 31.8% 7 71.4% benign(0.386) tolerated(0.08) neutral(0.423) superfamily_Protein kinase-like (PK-like) CASC5 57082 genome.wustl.edu 37 15 40914902 40914902 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_170589.3 +1 validated p.E840* 0.005 99 0% 109 17.4% 0 - - - - NULL RTF1 23168 genome.wustl.edu 37 15 41767951 41767951 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015138.4 +1 validated p.I472 1.000 91 0% 92 18.5% 1 100% - - - NULL LTK 4058 genome.wustl.edu 37 15 41801258 41801258 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002344.5 -1 reviewed p.S356N 0.010 130 0% 136 31.6% 2 0% benign(0.104) tolerated(0.21) neutral(0.052) NULL TYRO3 7301 genome.wustl.edu 37 15 41865229 41865229 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006293.3 +1 reviewed p.F635L 1.000 70 0% 63 34.9% 10 30% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like MGA 23269 genome.wustl.edu 37 15 41988480 41988480 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080541.2 +1 validated p.E424 1.000 117 0% 117 19.7% 2 50% - - - NULL MGA 23269 genome.wustl.edu 37 15 42003068 42003068 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080541.2 +1 validated p.D869Y 1.000 207 0% 192 27.6% 1 100% probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL MGA 23269 genome.wustl.edu 37 15 42042214 42042214 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080541.2 +1 validated p.E2186* 0.872 109 0.9% 129 31.8% 1 0% - - - NULL SPTBN5 51332 genome.wustl.edu 37 15 42169365 42169365 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016642.2 -1 validated p.F1185L 0.877 82 0% 69 39.1% 0 - possibly_damaging(0.633) tolerated(0.6) neutral(0.226) HMMPfam_Spectrin,HMMSmart_SM00150 TMEM87A 25963 genome.wustl.edu 37 15 42551161 42551161 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001110503.1 -1 validated p.F178V 0.000 151 0% 176 11.4% 0 - unknown(0) - - NULL SNAP23 8773 genome.wustl.edu 37 15 42823630 42823630 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003825.2 +1 reviewed p.R197H 1.000 197 0% 189 19.6% 40 42.5% benign(0.186) deleterious(0.01) neutral(0.423) HMMPfam_SNARE,HMMSmart_SM00397 STARD9 57519 genome.wustl.edu 37 15 42984681 42984681 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001129482.3 +1 model p.T3549 0.000 34 0% 27 22.2% 2 0% - - - NULL TTBK2 146057 genome.wustl.edu 37 15 43109262 43109262 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173500.3 -1 reviewed p.R191C 1.000 129 0% 71 15.5% 7 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase TP53BP1 7158 genome.wustl.edu 37 15 43707896 43707896 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001141980.1 -1 validated p.P1662L 1.000 182 0% 163 11.7% 72 11.1% probably_damaging(1) tolerated(0.06) deleterious(0.823) NULL STRC 161497 genome.wustl.edu 37 15 43900289 43900289 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153700.2 -1 reviewed p.R1224* 0.999 207 0% 177 20.3% 0 - - - - NULL STRC 161497 genome.wustl.edu 37 15 43997076 43997076 + Splice_Site SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000381686 -1 known e19-1 0.110 73 0% 69 11.6% 0 - - - - - FRMD5 84978 genome.wustl.edu 37 15 44180448 44180448 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032892.3 -1 validated p.L270R 1.000 202 0% 209 19.1% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_FERM_C,superfamily_PH domain-like DUOX2 50506 genome.wustl.edu 37 15 45392269 45392269 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014080.4 -1 reviewed p.V1055M 0.998 126 0% 90 20% 0 - benign(0.115) deleterious(0.01) neutral(0.415) NULL DMXL2 23312 genome.wustl.edu 37 15 51828614 51828614 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015263.3 -1 validated p.K688T 0.004 270 0% 299 22.4% 0 - benign(0.017) tolerated(0.22) neutral(0.043) NULL DMXL2 23312 genome.wustl.edu 37 15 51860704 51860704 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015263.3 -1 validated p.N89H 1.000 124 0% 104 25% 0 - probably_damaging(1) tolerated(0.13) deleterious(0.752) superfamily_WD40 repeat-like MYO5A 4644 genome.wustl.edu 37 15 52680048 52680048 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000259.3 -1 reviewed p.I577S 1.000 268 0.4% 310 31.9% 1 100% possibly_damaging(0.772) deleterious(0) deleterious(0.732) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases FAM214A 56204 genome.wustl.edu 37 15 52900882 52900882 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019600.2 -1 validated p.K743N 0.753 649 0% 599 21.4% 2 50% possibly_damaging(0.783) deleterious(0.02) deleterious(0.676) NULL UNC13C 440279 genome.wustl.edu 37 15 54305396 54305396 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080534.1 +1 provisional p.A99V 1.000 91 0% 98 33.7% 0 - probably_damaging(0.983) deleterious(0) deleterious(0.873) NULL CCPG1 9236 genome.wustl.edu 37 15 55652650 55652650 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004748.3 -1 validated p.E441K 1.000 364 0.3% 278 34.9% 28 28.5% probably_damaging(1) tolerated(0.33) deleterious(0.524) NULL CCPG1 9236 genome.wustl.edu 37 15 55664133 55664133 + Silent SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004748.3 -1 validated p.S188 0.918 216 0% 139 28.1% 13 46.1% - - - NULL DYX1C1 161582 genome.wustl.edu 37 15 55731719 55731719 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_130810.2 -1 reviewed p.D282N 0.998 262 0% 221 19.5% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TEX9 374618 genome.wustl.edu 37 15 56704563 56704563 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198524.1 +1 provisional p.R298C 1.000 110 0% 129 27.9% 1 0% probably_damaging(0.985) deleterious(0) deleterious(0.877) NULL ZNF280D 54816 genome.wustl.edu 37 15 56924164 56924164 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017661.2 -1 validated p.I824 0.023 371 0% 346 22.8% 6 0% - - - NULL ZNF280D 54816 genome.wustl.edu 37 15 56996401 56996401 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017661.2 -1 validated p.K31N 1.000 445 0.2% 410 15.4% 7 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) NULL AQP9 366 genome.wustl.edu 37 15 58471386 58471386 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020980.3 +1 reviewed p.L185F 0.860 104 0% 121 21.5% 0 - possibly_damaging(0.463) tolerated(0.45) neutral(0.164) HMMPfam_MIP,superfamily_Aquaporin-like SLTM 79811 genome.wustl.edu 37 15 59186051 59186051 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024755.2 -1 validated p.S539 0.000 549 0% 527 20.1% 3 0% - - - NULL TLN2 83660 genome.wustl.edu 37 15 63112759 63112759 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015059.2 +1 reviewed p.E2318K 1.000 97 0% 94 16% 16 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_SSF109885 HERC1 8925 genome.wustl.edu 37 15 63948004 63948004 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003922.3 -1 reviewed p.L3341V 0.988 218 0% 172 25% 5 60% probably_damaging(0.993) - - NULL HERC1 8925 genome.wustl.edu 37 15 63986309 63986309 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003922.3 -1 reviewed p.D1843G 1.000 158 0% 136 16.9% 0 - probably_damaging(0.959) - - NULL ZNF609 23060 genome.wustl.edu 37 15 64972875 64972875 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015042.1 +1 provisional p.R1326* 1.000 146 0% 157 27.4% 6 50% - - - NULL DPP8 54878 genome.wustl.edu 37 15 65748693 65748693 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_197960.2 -1 reviewed p.N679T 1.000 96 0% 96 34.4% 1 100% probably_damaging(0.983) deleterious(0) deleterious(0.873) superfamily_alpha/beta-Hydrolases DENND4A 10260 genome.wustl.edu 37 15 65962505 65962505 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001144823.1 -1 validated p.R1495W 1.000 149 0% 75 18.7% 3 33.3% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL SMAD3 4088 genome.wustl.edu 37 15 67482810 67482810 + Missense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005902.3 +1 reviewed p.Q405L 1.000 109 0.9% 87 12.6% 20 0% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) superfamily_SMAD/FHA domain SKOR1 390598 genome.wustl.edu 37 15 68119024 68119024 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000380035 +1 known p.G286 0.520 23 0% 17 23.5% 0 - - - - NULL NOX5 79400 genome.wustl.edu 37 15 69339761 69339761 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024505.3 +1 validated p.I549 0.964 86 0% 51 19.6% 0 - - - - HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl GLCE 26035 genome.wustl.edu 37 15 69560788 69560788 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015554.1 +1 validated p.D353 1.000 121 0% 91 28.6% 1 0% - - - NULL UACA 55075 genome.wustl.edu 37 15 70959638 70959638 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018003.2 -1 validated p.E1129* 0.692 58 0% 65 40% 2 0% - - - NULL MYO9A 4649 genome.wustl.edu 37 15 72180447 72180447 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006901.2 -1 validated p.R1718Q 1.000 205 0% 219 21.9% 0 - possibly_damaging(0.946) deleterious(0.02) deleterious(0.773) NULL TMEM202 338949 genome.wustl.edu 37 15 72691086 72691086 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080462.1 +1 provisional p.T58 0.938 134 0% 111 10.8% 0 - - - - NULL CYP11A1 1583 genome.wustl.edu 37 15 74635344 74635344 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000781.2 -1 reviewed p.E322* 0.999 85 0% 50 26% 0 - - - - HMMPfam_p450,superfamily_Cytochrome P450 CYP11A1 1583 genome.wustl.edu 37 15 74659790 74659790 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000781.2 -1 reviewed p.R46H 0.612 159 0% 143 30.1% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL SNX33 257364 genome.wustl.edu 37 15 75942338 75942338 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153271.1 +1 provisional p.E299K 1.000 57 0% 43 25.6% 14 42.8% possibly_damaging(0.919) deleterious(0) deleterious(0.814) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain C15orf27 123591 genome.wustl.edu 37 15 76452489 76452489 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152335.2 +1 validated p.L146M 0.962 443 0% 342 31% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SH2D7 646892 genome.wustl.edu 37 15 78390770 78390770 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001101404.1 +1 provisional p.H159 0.027 67 1.5% 49 30.6% 0 - - - - NULL ACSBG1 23205 genome.wustl.edu 37 15 78486971 78486971 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015162.3 -1 reviewed p.Y110 0.000 132 0% 81 14.8% 0 - - - - superfamily_Acetyl-CoA synthetase-like IL16 3603 genome.wustl.edu 37 15 81592044 81592044 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_172217.3 +1 reviewed p.R793C 1.000 54 0% 40 20% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL EFTUD1 79631 genome.wustl.edu 37 15 82511997 82511997 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024580.5 -1 validated p.R536Q 0.057 85 0% 114 31.6% 2 0% benign(0.009) tolerated(0.73) neutral(0.002) superfamily_Translation proteins AP3B2 8120 genome.wustl.edu 37 15 83328710 83328710 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004644.3 -1 validated p.I995 1.000 72 0% 57 29.8% 0 - - - - NULL ADAMTSL3 57188 genome.wustl.edu 37 15 84639305 84639305 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207517.2 +1 validated p.R854W 1.000 222 0% 193 10.9% 4 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat ALPK3 57538 genome.wustl.edu 37 15 85407715 85407715 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020778.4 +1 validated p.I1716 0.998 72 1.4% 61 26.2% 26 46.1% - - - HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like) SLC28A1 9154 genome.wustl.edu 37 15 85433735 85433735 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004213.3 +1 validated p.R83* 0.013 46 0% 38 34.2% 0 - - - - NULL AGBL1 123624 genome.wustl.edu 37 15 86686942 86686942 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000441037 +1 known p.R26I 1.000 107 0% 105 24.8% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) superfamily_ARM repeat MIR7-2 407044 genome.wustl.edu 37 15 89155158 89155158 + RNA SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000384970 +1 known NULL 0.654 51 0% 35 14.3% 0 - - - - - AEN 64782 genome.wustl.edu 37 15 89172477 89172477 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022767.3 +1 validated p.G187 1.000 60 0% 38 42.1% 24 29.1% - - - HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T ACAN 176 genome.wustl.edu 37 15 89382017 89382017 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013227.3 +1 reviewed p.S65Y 1.000 194 0% 137 21.9% 0 - unknown(0) deleterious(0) - HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin ACAN 176 genome.wustl.edu 37 15 89385082 89385082 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013227.3 +1 reviewed p.F247 0.999 141 0% 108 23.1% 0 - - - - HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like ZNF774 342132 genome.wustl.edu 37 15 90897943 90897943 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004309.2 +1 validated p.E17D 0.975 237 0% 229 21% 3 0% benign(0.098) deleterious(0) neutral(0.452) NULL ZNF774 342132 genome.wustl.edu 37 15 90904228 90904228 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004309.2 +1 validated p.A389T 0.026 78 1.3% 77 32.5% 1 0% benign(0.007) tolerated(0.48) neutral(0.011) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SLCO3A1 28232 genome.wustl.edu 37 15 92706023 92706023 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013272.3 +1 validated p.I597 0.996 31 0% 19 31.6% 25 32% - - - HMMPfam_OATP,superfamily_MFS general substrate transporter LINS 55180 genome.wustl.edu 37 15 101114038 101114038 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040614.1 -1 reviewed p.S347L 0.326 132 0% 105 13.3% 6 50% benign(0) tolerated(1) - NULL ASB7 140460 genome.wustl.edu 37 15 101188569 101188569 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198243.2 +1 reviewed p.R287* 1.000 233 0.4% 189 18.5% 2 0% - - - HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_Ankyrin repeat ZNF598 90850 genome.wustl.edu 37 16 2051623 2051623 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000431526 -1 known p.G325E 1.000 41 0% 35 11.4% 26 7.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL MLST8 64223 genome.wustl.edu 37 16 2256534 2256534 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022372.3 +1 validated p.N73T 1.000 185 0% 154 29.9% 181 44.7% benign(0.002) tolerated(0.59) neutral(0.004) superfamily_WD40 repeat-like ECI1 1632 genome.wustl.edu 37 16 2290058 2290058 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001919.3 -1 reviewed p.F277 0.356 108 0% 85 29.4% 230 38.6% - - - superfamily_ClpP/crotonase ZNF434 54925 genome.wustl.edu 37 16 3434774 3434774 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017810.2 -1 provisional p.R95C 0.000 98 0% 101 28.7% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TRAP1 10131 genome.wustl.edu 37 16 3724386 3724386 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016292.2 -1 validated p.T333M 0.998 68 0% 38 10.5% 528 1.7% possibly_damaging(0.853) tolerated(0.06) deleterious(0.651) superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90 PPL 5493 genome.wustl.edu 37 16 4934870 4934870 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002705.4 -1 reviewed p.I1262 0.004 197 0% 171 10.5% 17 23.5% - - - NULL ABAT 18 genome.wustl.edu 37 16 8873425 8873425 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000663.4 +1 reviewed p.L453 0.997 196 0% 120 30.8% 8 12.5% - - - superfamily_PyrdxlP-dep_Trfase_major C16orf72 29035 genome.wustl.edu 37 16 9210637 9210637 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014117.2 +1 validated p.V232 1.000 194 0% 151 30.5% 20 35% - - - NULL ATF7IP2 80063 genome.wustl.edu 37 16 10531984 10531984 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024997.2 +1 validated p.I329 0.023 188 0% 193 29.5% 0 - - - - NULL CLEC16A 23274 genome.wustl.edu 37 16 11272253 11272253 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015226.2 +1 validated p.N956 0.001 32 3.1% 32 18.8% 44 36.3% - - - NULL ZC3H7A 29066 genome.wustl.edu 37 16 11845324 11845324 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014153.2 -1 provisional p.K922T 0.998 334 0% 310 29% 24 37.5% benign(0.268) tolerated(0.1) neutral(0.315) HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger RSL1D1 26156 genome.wustl.edu 37 16 11944163 11944163 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015659.2 -1 validated p.I73S 1.000 184 0% 188 33.5% 10 50% probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_Ribosomal protein L1 KIAA0430 9665 genome.wustl.edu 37 16 15719471 15719471 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014647.3 -1 validated p.E571K 1.000 184 0.5% 167 21.6% 2 0% benign(0.032) deleterious(0) neutral(0.446) HMMSmart_SM00360,superfamily_RNA-binding domain RBD MYH11 4629 genome.wustl.edu 37 16 15814759 15814759 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040114.1 -1 reviewed p.F1583 0.630 115 0% 109 15.6% 0 - - - - HMMPfam_Myosin_tail_1 ABCC6 368 genome.wustl.edu 37 16 16259681 16259681 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001171.5 -1 reviewed p.F1035L 1.000 41 0% 37 16.2% 1 0% probably_damaging(0.971) tolerated(0.1) deleterious(0.700) HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain NOMO3 408050 genome.wustl.edu 37 16 16338991 16338991 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004067.2 +1 reviewed p.E157K 0.478 395 0% 311 26.4% 13 15.3% benign(0.032) tolerated(0.24) neutral(0.039) HMMPfam_Cna_B,superfamily_Starch-binding domain-like NOMO2 283820 genome.wustl.edu 37 16 18560883 18560883 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004060.1 -1 reviewed p.E157K 0.410 375 0% 300 21.3% 13 38.4% benign(0.021) tolerated(0.24) neutral(0.038) HMMPfam_Cna_B,superfamily_Starch-binding domain-like SMG1 23049 genome.wustl.edu 37 16 18859302 18859302 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015092.4 -1 reviewed p.E1893* 1.000 207 0% 174 19.5% 0 - - - - NULL TMC5 79838 genome.wustl.edu 37 16 19468326 19468326 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024780.4 +1 validated p.E100* 0.407 143 0% 121 17.4% 0 - - - - NULL GPRC5B 51704 genome.wustl.edu 37 16 19884033 19884033 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016235.1 -1 reviewed p.Y45 1.000 28 0% 20 25% 25 12% - - - NULL ACSM3 6296 genome.wustl.edu 37 16 20787222 20787222 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005622.3 +1 validated p.R94Q 0.981 136 0% 186 19.9% 1 0% benign(0.076) tolerated(0.14) neutral(0.255) superfamily_Acetyl-CoA synthetase-like ACSM3 6296 genome.wustl.edu 37 16 20788861 20788861 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005622.3 +1 validated p.E199D 0.664 68 0% 68 20.6% 3 0% benign(0) tolerated(1) - HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like ZP2 7783 genome.wustl.edu 37 16 21222692 21222692 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003460.1 -1 reviewed p.F29L 0.018 228 0% 214 17.8% 0 - benign(0.001) tolerated(0.75) neutral(0.002) NULL VWA3A 146177 genome.wustl.edu 37 16 22109002 22109002 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173615.3 +1 validated p.T71A 1.000 316 0% 268 22% 1 100% probably_damaging(0.991) tolerated(0.3) deleterious(0.473) NULL VWA3A 146177 genome.wustl.edu 37 16 22149750 22149750 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173615.3 +1 validated p.E737* 0.893 148 0% 130 12.3% 1 0% - - - NULL POLR3E 55718 genome.wustl.edu 37 16 22334210 22334210 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018119.2 +1 validated p.S342 0.779 38 0% 38 10.5% 51 13.7% - - - HMMPfam_Sin_N GGA2 23062 genome.wustl.edu 37 16 23505688 23505688 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015044.4 -1 reviewed p.A63V 1.000 103 0% 94 33% 55 45.4% possibly_damaging(0.939) deleterious(0) deleterious(0.829) HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS PRKCB 5579 genome.wustl.edu 37 16 24226133 24226133 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002738.6 +1 reviewed p.S673N 1.000 89 0% 108 35.2% 0 - benign(0.019) deleterious(0) neutral(0.446) NULL RBBP6 5930 genome.wustl.edu 37 16 24582684 24582684 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006910.4 +1 reviewed p.R1433C 1.000 82 0% 113 15.9% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TNRC6A 27327 genome.wustl.edu 37 16 24831637 24831637 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014494.2 +1 reviewed p.R1753H 1.000 212 0% 136 16.2% 15 20% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL AQP8 343 genome.wustl.edu 37 16 25232799 25232799 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001169.2 +1 reviewed p.A94 0.027 58 0% 58 10.3% 0 - - - - HMMPfam_MIP,PatternScan_MIP,superfamily_MIP KIAA0556 23247 genome.wustl.edu 37 16 27692775 27692775 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015202.2 +1 validated p.F288 0.162 156 0% 150 34.7% 1 0% - - - NULL ITGAL 3683 genome.wustl.edu 37 16 30490698 30490698 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002209.2 +1 reviewed p.S164 0.000 199 0% 158 13.9% 5 0% - - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain SRCAP 10847 genome.wustl.edu 37 16 30723032 30723032 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006662.2 +1 validated p.E487K 0.896 122 0% 97 37.1% 7 71.4% unknown(0) - - NULL SRCAP 10847 genome.wustl.edu 37 16 30749603 30749603 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006662.2 +1 validated p.R2748* 1.000 51 0% 38 34.2% 77 41.5% - - - NULL SETD1A 9739 genome.wustl.edu 37 16 30974763 30974763 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014712.1 +1 provisional p.R176Q 1.000 102 0% 89 32.6% 16 43.7% probably_damaging(0.993) - - superfamily_SSF54928 ENSG00000198555 0 genome.wustl.edu 37 16 33784687 33784687 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000359871 +1 known p.P491S 1.000 29 0% 29 24.1% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_SNF NETO2 81831 genome.wustl.edu 37 16 47143460 47143460 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018092.3 -1 reviewed p.R273* 0.997 144 0% 137 25.5% 3 0% - - - HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ENSG00000247487 0 genome.wustl.edu 37 16 48382005 48382005 + RNA SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000501305 -1 known NULL 1.000 37 0% 41 29.3% 0 - - - - - SIAH1 6477 genome.wustl.edu 37 16 48396012 48396012 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001006610.1 -1 reviewed p.P141T 1.000 132 0% 129 17.1% 28 25% benign(0) tolerated(0.11) neutral(0.272) superfamily_Traf_like,HMMPfam_Sina,superfamily_SSF57850 N4BP1 9683 genome.wustl.edu 37 16 48587562 48587562 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153029.3 -1 validated p.F636L 1.000 170 0% 187 28.3% 2 0% probably_damaging(0.988) deleterious(0.03) deleterious(0.802) NULL N4BP1 9683 genome.wustl.edu 37 16 48595226 48595226 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153029.3 -1 validated p.S443Y 0.010 336 0% 318 20.1% 3 0% possibly_damaging(0.906) deleterious(0.01) deleterious(0.765) NULL CBLN1 869 genome.wustl.edu 37 16 49315138 49315138 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004352.3 -1 validated p.R80H 1.000 48 2.1% 40 17.5% 1 100% possibly_damaging(0.925) tolerated(0.17) neutral(0.432) HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like ZNF423 23090 genome.wustl.edu 37 16 49672151 49672151 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015069.2 -1 reviewed p.F304 0.750 84 0% 54 31.5% 16 25% - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2 CYLD 1540 genome.wustl.edu 37 16 50826528 50826528 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015247.2 +1 reviewed p.I754 1.000 112 0% 150 20.7% 0 - - - - HMMPfam_UCH,superfamily_Cysteine proteinases RBL2 5934 genome.wustl.edu 37 16 53476577 53476577 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005611.3 +1 validated p.E127K 1.000 106 0% 100 19% 1 100% benign(0.406) deleterious(0.03) deleterious(0.495) HMMSmart_CYCLIN PRSS54 221191 genome.wustl.edu 37 16 58314650 58314650 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080492.1 -1 provisional p.G222 1.000 42 0% 32 37.5% 4 75% - - - HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys CNOT1 23019 genome.wustl.edu 37 16 58565905 58565905 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016284.3 -1 validated p.R2045Q 1.000 163 0% 115 27% 23 13% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Not1 CNOT1 23019 genome.wustl.edu 37 16 58620454 58620454 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016284.3 -1 validated p.R211H 1.000 136 0% 115 33.9% 0 - possibly_damaging(0.7) tolerated(0.08) deleterious(0.551) NULL CDH8 1006 genome.wustl.edu 37 16 61858928 61858928 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001796.2 -1 reviewed p.K275Q 1.000 185 0% 171 19.9% 0 - probably_damaging(0.999) tolerated(0.09) deleterious(0.787) superfamily_Cadherin CKLF 51192 genome.wustl.edu 37 16 66592130 66592130 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016951.2 +1 reviewed p.A39V 0.930 390 0.3% 411 32.4% 32 21.8% probably_damaging(0.99) deleterious(0.03) deleterious(0.806) HMMPfam_MARVEL C16orf70 80262 genome.wustl.edu 37 16 67166366 67166366 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025187.3 +1 provisional p.S98Y 1.000 141 0% 111 12.6% 6 0% probably_damaging(0.975) deleterious(0.01) deleterious(0.823) HMMPfam_UPF0183 CTCF 10664 genome.wustl.edu 37 16 67644740 67644740 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006565.2 +1 reviewed p.E2G 1.000 55 0% 64 26.6% 8 37.5% probably_damaging(0.98) deleterious(0) deleterious(0.869) NULL CTCF 10664 genome.wustl.edu 37 16 67670646 67670646 + Nonsense_Mutation SNP G G T rs35257000 byCluster;byFrequency TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006565.2 +1 reviewed p.E631* 1.000 75 0% 69 27.5% 6 16.6% - - - NULL HYDIN 54768 genome.wustl.edu 37 16 70897082 70897082 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032821.2 -1 validated p.F3824 0.003 132 0% 120 13.3% 5 0% - - - NULL ZNF821 55565 genome.wustl.edu 37 16 71894069 71894069 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017530.1 -1 provisional p.R322Q 1.000 38 0% 34 11.8% 32 9.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL PSMD7 5713 genome.wustl.edu 37 16 74334091 74334091 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002811.3 +1 reviewed p.S51 1.000 252 0% 226 33.6% 65 43% - - - HMMPfam_Mov34,HMMSmart_JAB_MPN BCAR1 9564 genome.wustl.edu 37 16 75276529 75276529 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014567.3 -1 validated p.P158S 0.993 274 0% 224 17.4% 50 30% benign(0) tolerated(0.6) neutral(0.004) NULL NUDT7 283927 genome.wustl.edu 37 16 77775869 77775869 + RNA SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_024154.1 +1 reviewed NULL 0.000 60 0% 61 44.3% 2 50% - - - - C16orf46 123775 genome.wustl.edu 37 16 81095485 81095485 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152337.2 -1 validated p.R157* 0.027 71 0% 68 29.4% 0 - - - - NULL GCSH 2653 genome.wustl.edu 37 16 81118082 81118082 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004483.4 -1 reviewed p.S137Y 1.000 172 0.6% 167 26.3% 6 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_GCV_H,superfamily_Single hybrid motif PKD1L2 114780 genome.wustl.edu 37 16 81181001 81181001 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052892.3 -1 reviewed p.V1697A 0.357 243 0% 179 18.4% 0 - possibly_damaging(0.452) deleterious(0) deleterious(0.593) NULL BCMO1 53630 genome.wustl.edu 37 16 81324161 81324161 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017429.2 +1 reviewed p.C541 0.000 80 0% 79 27.8% 6 50% - - - NULL MPHOSPH6 10200 genome.wustl.edu 37 16 82197737 82197737 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005792.2 -1 validated p.I38 0.999 217 0% 235 13.6% 1 100% - - - HMMPfam_MPP6 ATP2C2 9914 genome.wustl.edu 37 16 84449126 84449126 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014861.2 +1 validated p.E185* 1.000 91 0% 74 12.2% 21 0% - - - HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M USP10 9100 genome.wustl.edu 37 16 84793794 84793794 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005153.2 +1 reviewed p.I489 0.043 202 0% 194 10.3% 17 17.6% - - - HMMPfam_UCH,superfamily_SSF54001 VPS53 55275 genome.wustl.edu 37 17 489523 489523 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001128159.1 -1 reviewed p.E434K 1.000 236 0% 227 35.7% 3 0% benign(0.206) tolerated(0.28) neutral(0.052) HMMPfam_Vps53_N TIMM22 29928 genome.wustl.edu 37 17 902017 902017 + Splice_Site SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013337.2 +1 provisional e2-2 1.000 473 0.2% 397 11.3% 0 - - - - - PRPF8 10594 genome.wustl.edu 37 17 1579577 1579577 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006445.3 -1 reviewed p.P826T 1.000 149 0% 104 18.3% 43 30.2% possibly_damaging(0.924) deleterious(0) deleterious(0.818) NULL TSR1 55720 genome.wustl.edu 37 17 2237912 2237912 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018128.4 -1 validated p.R279* 1.000 128 0% 130 13.8% 5 0% - - - HMMPfam_AARP2CN,HMMSmart_AARP2CN OR1G1 8390 genome.wustl.edu 37 17 3030795 3030795 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003555.1 -1 provisional p.F17 0.001 78 0% 83 22.9% 0 - - - - superfamily_SSF81321 TRPV3 162514 genome.wustl.edu 37 17 3436188 3436188 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145068.2 -1 reviewed p.E276D 0.998 69 0% 54 24.1% 0 - benign(0.001) tolerated(0.91) - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat UBE2G1 7326 genome.wustl.edu 37 17 4210355 4210355 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003342.4 -1 reviewed p.R37Q 1.000 202 0% 200 20.5% 5 40% benign(0.019) tolerated(0.12) neutral(0.262) HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like TM4SF5 9032 genome.wustl.edu 37 17 4685935 4685935 + Splice_Site SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003963.2 +1 reviewed e3+1 0.986 49 0% 32 28.1% 0 - - - - - USP6 9098 genome.wustl.edu 37 17 5041531 5041531 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004505.2 +1 validated p.K347N 0.981 74 0% 57 22.8% 0 - unknown(0) deleterious(0.01) - superfamily_Ypt/Rab-GAP domain of gyp1p NUP88 4927 genome.wustl.edu 37 17 5307519 5307519 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002532.3 -1 reviewed p.Y364 0.998 142 0% 148 11.5% 55 9% - - - HMMPfam_Nup88 DERL2 51009 genome.wustl.edu 37 17 5383380 5383380 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016041.3 -1 provisional p.S203Y 1.000 146 0% 158 16.5% 11 18.1% benign(0) tolerated(0.51) neutral(0.009) HMMPfam_DER1 PITPNM3 83394 genome.wustl.edu 37 17 6381923 6381923 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031220.3 -1 reviewed p.N241D 1.000 91 0% 81 14.8% 4 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL FXR2 9513 genome.wustl.edu 37 17 7496422 7496422 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004860.3 -1 reviewed p.D470N 0.998 22 4.5% 32 18.8% 3 33.3% benign(0.221) tolerated(0.17) neutral(0.081) NULL DNAH2 146754 genome.wustl.edu 37 17 7669750 7669750 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020877.2 +1 validated p.I1209T 1.000 84 0% 53 26.4% 1 100% possibly_damaging(0.706) deleterious(0.01) deleterious(0.659) NULL CHD3 1107 genome.wustl.edu 37 17 7803251 7803251 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005271.2 +1 reviewed p.S920L 1.000 254 0% 164 29.9% 104 40.3% probably_damaging(0.998) - - HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases ALOX15B 247 genome.wustl.edu 37 17 7945809 7945809 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001141.2 +1 reviewed p.A191V 0.002 104 0% 69 30.4% 0 - benign(0.004) deleterious(0.01) neutral(0.406) superfamily_Lipoxigenase ALOX15B 247 genome.wustl.edu 37 17 7948885 7948885 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001141.2 +1 reviewed p.R361C 0.552 91 0% 66 39.4% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lipoxygenase,superfamily_Lipoxigenase ALOXE3 59344 genome.wustl.edu 37 17 8017891 8017891 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021628.2 -1 reviewed p.K197N 0.120 189 0% 164 14.6% 0 - probably_damaging(0.962) tolerated(0.24) neutral(0.443) superfamily_Lipoxygenase MYH4 4622 genome.wustl.edu 37 17 10358986 10358986 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017533.2 -1 validated p.R707C 1.000 228 0% 151 13.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYH4 4622 genome.wustl.edu 37 17 10367852 10367852 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017533.2 -1 validated p.Y195* 1.000 267 0% 228 28.1% 0 - - - - HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 MYH2 4620 genome.wustl.edu 37 17 10432497 10432497 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001100112.1 -1 reviewed p.K1112N 1.000 237 0% 201 11.4% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Myosin_tail_1 DNAH9 1770 genome.wustl.edu 37 17 11687836 11687836 + Missense_Mutation SNP G G T rs145103593 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001372.3 +1 reviewed p.D2681Y 1.000 222 0% 192 17.7% 4 25% probably_damaging(0.956) deleterious(0) deleterious(0.844) superfamily_P-loop containing nucleoside triphosphate hydrolases COX10 1352 genome.wustl.edu 37 17 14110263 14110263 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001303.3 +1 reviewed p.R355 0.940 42 0% 36 30.6% 11 18.1% - - - HMMPfam_UbiA ZNF624 57547 genome.wustl.edu 37 17 16526845 16526845 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020787.2 -1 validated p.S452Y 0.273 140 0% 152 13.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CCDC144A 9720 genome.wustl.edu 37 17 16638388 16638388 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014695.1 +1 provisional p.D935Y 0.998 94 0% 87 21.8% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL LGALS9C 654346 genome.wustl.edu 37 17 18396152 18396152 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001040078.2 +1 validated p.F301 0.417 121 0% 107 21.5% 0 - - - - HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases LOC645139 645139 genome.wustl.edu 37 17 18554468 18554468 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_928169.3 +1 model p.N360 0.997 543 0.2% 423 29.1% 10 0% - - - HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat CCDC144C 348254 genome.wustl.edu 37 17 20297498 20297498 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000425519 +1 known p.R1161I 0.051 132 0% 121 36.4% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL CCDC144NL 339184 genome.wustl.edu 37 17 20768755 20768755 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001004306.1 -1 provisional p.K213N 0.011 454 0% 441 15% 0 - unknown(0) - - NULL SPAG5 10615 genome.wustl.edu 37 17 26905507 26905507 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006461.3 -1 reviewed p.R1080W 1.000 78 0% 87 32.2% 25 36% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PIPOX 51268 genome.wustl.edu 37 17 27380440 27380440 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016518.2 +1 validated p.R163* 0.848 202 0% 179 36.9% 1 0% - - - HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain TAOK1 57551 genome.wustl.edu 37 17 27837990 27837990 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020791.1 +1 validated p.R562* 1.000 70 0% 105 20% 1 0% - - - superfamily_Protein kinase-like (PK-like) SSH2 85464 genome.wustl.edu 37 17 27959880 27959880 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033389.2 -1 reviewed p.E751* 1.000 160 0% 131 29.8% 1 100% - - - NULL EFCAB5 374786 genome.wustl.edu 37 17 28380531 28380531 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198529.3 +1 validated p.R520I 0.003 275 0% 268 17.5% 0 - probably_damaging(0.976) tolerated(0.29) neutral(0.447) superfamily_EF-hand ZNF207 7756 genome.wustl.edu 37 17 30685615 30685615 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098507.1 +1 validated p.K88Q 1.000 154 0% 165 27.3% 41 34.1% possibly_damaging(0.947) deleterious(0.04) deleterious(0.740) NULL TMEM132E 124842 genome.wustl.edu 37 17 32959819 32959819 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_207313.1 +1 provisional p.P437S 1.000 92 0% 75 21.3% 0 - probably_damaging(0.998) tolerated(0.89) deleterious(0.474) NULL CCT6B 10693 genome.wustl.edu 37 17 33267573 33267573 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006584.2 -1 reviewed p.R318I 1.000 121 0% 133 22.6% 0 - probably_damaging(0.968) deleterious(0) deleterious(0.855) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like CCT6B 10693 genome.wustl.edu 37 17 33269644 33269644 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006584.2 -1 reviewed p.F248L 1.000 183 0% 240 33.3% 0 - benign(0.095) deleterious(0.02) neutral(0.390) HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like SLFN11 91607 genome.wustl.edu 37 17 33690215 33690215 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001104587.1 -1 validated p.I204 0.000 145 0% 132 11.4% 3 0% - - - NULL SLFN14 342618 genome.wustl.edu 37 17 33879893 33879893 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001129820.1 -1 provisional p.R587H 0.915 116 0% 103 26.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLFN14 342618 genome.wustl.edu 37 17 33884268 33884268 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001129820.1 -1 provisional p.E272K 0.987 316 0% 340 21.2% 0 - benign(0.001) tolerated(0.21) neutral(0.044) HMMPfam_AAA_4 ACACA 31 genome.wustl.edu 37 17 35518873 35518873 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198834.1 -1 reviewed p.R1724Q 1.000 181 0% 142 30.3% 7 57.1% benign(0) tolerated(0.89) - HMMPfam_Carboxyl_trans,superfamily_SSF52096 TADA2A 6871 genome.wustl.edu 37 17 35800760 35800760 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001488.3 +1 reviewed p.H147N 1.000 107 0% 89 19.1% 17 29.4% benign(0.004) tolerated(0.14) neutral(0.249) NULL ENSG00000224974 0 genome.wustl.edu 37 17 36233854 36233854 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000432091 -1 known p.L6V 1.000 121 0% 139 25.2% 1 100% - - - HMMSmart_14_3_3 C17orf98 388381 genome.wustl.edu 37 17 36993443 36993443 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080465.2 -1 validated p.I86 1.000 284 0.4% 230 20% 0 - - - - NULL KRT25 147183 genome.wustl.edu 37 17 38907296 38907296 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181534.3 -1 reviewed p.V289 0.023 209 0% 189 30.2% 0 - - - - HMMPfam_Filament KRT28 162605 genome.wustl.edu 37 17 38956032 38956032 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181535.3 -1 reviewed p.G38 0.011 75 0% 55 16.4% 0 - - - - NULL KRTAP9-7 100505724 genome.wustl.edu 37 17 39432311 39432311 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000391354 +1 known p.V121G 0.004 122 0% 91 23.1% 0 - possibly_damaging(0.951) tolerated(0.1) deleterious(0.680) HMMPfam_Keratin_B2 KRT15 3866 genome.wustl.edu 37 17 39673187 39673187 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002275.3 -1 reviewed p.G204D 0.981 141 0% 116 19.8% 8 25% benign(0.124) deleterious(0.04) neutral(0.359) HMMPfam_Filament KRT16 3868 genome.wustl.edu 37 17 39767449 39767449 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005557.3 -1 reviewed p.D269N 0.899 97 0% 70 12.9% 14 7.1% probably_damaging(0.959) tolerated(0.69) neutral(0.405) HMMPfam_Filament CNTNAP1 8506 genome.wustl.edu 37 17 40839788 40839788 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003632.2 +1 reviewed p.F365 0.998 186 0% 143 26.6% 1 0% - - - superfamily_ConA_like_lec_gl AOC2 314 genome.wustl.edu 37 17 41001198 41001198 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_009590.2 +1 reviewed p.R562W 0.065 63 0% 43 16.3% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain ETV4 2118 genome.wustl.edu 37 17 41607307 41607307 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001079675.1 -1 validated p.E300D 0.996 126 0% 127 32.3% 2 0% benign(0.004) tolerated(0.48) neutral(0.011) HMMPfam_ETS_PEA3_N MPP3 4356 genome.wustl.edu 37 17 41908677 41908677 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001932.3 -1 reviewed p.L53I 1.000 95 0% 69 10.1% 0 - probably_damaging(0.991) tolerated(0.16) deleterious(0.504) HMMSmart_SM00569,HMMPfam_L27 CD300LG 146894 genome.wustl.edu 37 17 41925945 41925945 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145273.3 +1 validated p.G21 0.006 21 0% 33 54.5% 0 - - - - HMMPfam_V-set,superfamily_Immunoglobulin HDAC5 10014 genome.wustl.edu 37 17 42162445 42162445 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001015053.1 -1 reviewed p.R711Q 1.000 39 0% 34 23.5% 71 38% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase KIF18B 146909 genome.wustl.edu 37 17 43011894 43011894 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080443.1 -1 provisional p.R223H 1.000 98 0% 80 26.3% 8 37.5% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases CDC27 996 genome.wustl.edu 37 17 45214585 45214585 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001114091.1 -1 reviewed p.E622* 1.000 127 0% 158 17.1% 3 0% - - - HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like KAT7 11143 genome.wustl.edu 37 17 47875883 47875883 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007067.3 +1 provisional p.F181L 1.000 95 0% 70 18.6% 13 38.4% benign(0.006) tolerated(0.51) neutral(0.009) superfamily_CCHHC domain KAT7 11143 genome.wustl.edu 37 17 47888896 47888896 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007067.3 +1 provisional p.R271I 1.000 282 0% 237 34.6% 7 57.1% possibly_damaging(0.585) deleterious(0.02) deleterious(0.585) NULL CACNA1G 8913 genome.wustl.edu 37 17 48681624 48681624 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018896.3 +1 validated p.F1426 0.997 284 0% 239 36% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels EPX 8288 genome.wustl.edu 37 17 56281654 56281654 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000502.4 +1 reviewed p.R673Q 1.000 98 0% 81 17.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_An_peroxidase,superfamily_Peroxidase_super BZRAP1 9256 genome.wustl.edu 37 17 56388998 56388998 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004758.2 -1 validated p.I1005 0.249 46 0% 31 12.9% 3 0% - - - HMMSmart_SM00060,superfamily_Fibronectin type III BZRAP1 9256 genome.wustl.edu 37 17 56400068 56400068 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004758.2 -1 validated p.R422C 0.998 47 4.3% 39 35.9% 1 100% probably_damaging(0.982) deleterious(0.02) deleterious(0.809) NULL TEX14 56155 genome.wustl.edu 37 17 56649392 56649392 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198393.2 -1 reviewed p.E1243* 0.567 114 0% 93 35.5% 0 - - - - NULL SMG8 55181 genome.wustl.edu 37 17 57288864 57288864 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018149.6 +1 validated p.V484 0.978 106 0% 117 21.4% 0 - - - - HMMPfam_DUF2146 VMP1 81671 genome.wustl.edu 37 17 57895091 57895091 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030938.3 +1 validated p.T311A 1.000 129 0.8% 179 26.3% 1 0% benign(0) tolerated(1) - NULL RNFT1 51136 genome.wustl.edu 37 17 58033868 58033868 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016125.3 -1 validated p.R351Q 0.023 160 0% 203 27.6% 2 50% benign(0.038) tolerated(0.44) neutral(0.015) NULL USP32 84669 genome.wustl.edu 37 17 58262937 58262937 + Missense_Mutation SNP G G A rs189554280 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032582.3 -1 validated p.R1240C 1.000 195 0.5% 159 12.6% 12 8.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_UCH,superfamily_SSF54001 PPM1D 8493 genome.wustl.edu 37 17 58740668 58740668 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003620.2 +1 reviewed p.E525* 1.000 76 0% 91 14.3% 1 0% - - - NULL BRIP1 83990 genome.wustl.edu 37 17 59760793 59760793 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032043.1 -1 reviewed p.K1205R 0.036 186 0.5% 207 22.2% 0 - probably_damaging(0.979) deleterious(0) deleterious(0.867) NULL INTS2 57508 genome.wustl.edu 37 17 60003864 60003864 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020748.2 -1 validated p.A56S 1.000 95 0% 112 33% 3 0% benign(0.012) tolerated(1) neutral(0.001) NULL MED13 9969 genome.wustl.edu 37 17 60060341 60060341 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005121.2 -1 reviewed p.R1008Q 1.000 137 0% 121 21.5% 7 57.1% probably_damaging(1) tolerated(0.13) deleterious(0.752) NULL TANC2 26115 genome.wustl.edu 37 17 61391833 61391833 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_025185.3 +1 validated p.F341S 1.000 242 0% 198 22.7% 2 50% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases SCN4A 6329 genome.wustl.edu 37 17 62041083 62041083 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000334.4 -1 reviewed p.A519T 0.998 66 0% 36 33.3% 0 - benign(0.007) tolerated(0.4) neutral(0.016) NULL TEX2 55852 genome.wustl.edu 37 17 62272409 62272409 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018469.3 -1 validated p.A564V 1.000 200 0% 243 26.3% 3 0% probably_damaging(0.964) tolerated(1) neutral(0.406) HMMSmart_PH LRRC37A3 374819 genome.wustl.edu 37 17 62857072 62857072 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_199340.2 -1 provisional p.G1064 0.000 255 0% 216 29.6% 6 16.6% - - - NULL ABCA9 10350 genome.wustl.edu 37 17 67014666 67014666 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080283.3 -1 reviewed p.Y885 0.000 160 0% 134 16.4% 0 - - - - NULL ABCA9 10350 genome.wustl.edu 37 17 67025314 67025314 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080283.3 -1 reviewed p.L500F 0.956 130 0% 124 14.5% 0 - possibly_damaging(0.934) deleterious(0) deleterious(0.825) superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA6 23460 genome.wustl.edu 37 17 67111057 67111057 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080284.2 -1 reviewed p.K543T 1.000 165 0% 154 13.6% 0 - benign(0.003) tolerated(0.23) neutral(0.042) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases ABCA10 10349 genome.wustl.edu 37 17 67170447 67170447 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080282.3 -1 reviewed p.G1046D 0.235 125 0% 130 25.4% 0 - benign(0.032) tolerated(0.34) neutral(0.025) NULL ABCA5 23461 genome.wustl.edu 37 17 67247996 67247996 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018672.3 -1 reviewed p.R1476Q 1.000 115 0% 132 25.8% 4 25% probably_damaging(0.977) tolerated(0.43) neutral(0.432) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases KCNJ16 3773 genome.wustl.edu 37 17 68129135 68129135 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018658.1 +1 reviewed p.E303* 1.000 105 0% 89 12.4% 0 - - - - HMMPfam_IRK,superfamily_Ig_E-set KCNJ2 3759 genome.wustl.edu 37 17 68171717 68171717 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000891.2 +1 reviewed p.V179 1.000 251 0.4% 179 37.4% 3 0% - - - HMMPfam_IRK,superfamily_E set domains,superfamily_Voltage-gated potassium channels C17orf80 55028 genome.wustl.edu 37 17 71232864 71232864 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017941.4 +1 validated p.P415S 0.001 96 0% 95 15.8% 4 25% benign(0.013) tolerated(0.5) neutral(0.011) NULL DNAI2 64446 genome.wustl.edu 37 17 72278044 72278044 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_023036.4 +1 reviewed p.D30N 1.000 54 0% 34 29.4% 38 42.1% probably_damaging(0.999) tolerated(0.09) deleterious(0.787) NULL KIF19 124602 genome.wustl.edu 37 17 72342624 72342624 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153209.3 +1 validated p.Y295 0.949 57 0% 48 14.6% 37 40.5% - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases MFSD11 79157 genome.wustl.edu 37 17 74774424 74774424 + Missense_Mutation SNP G G A rs192554610 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024311.2 +1 provisional p.R447Q 0.997 234 0% 200 24% 8 37.5% benign(0.374) tolerated(0.17) neutral(0.178) NULL ENGASE 64772 genome.wustl.edu 37 17 77075629 77075629 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042573.1 +1 validated p.D159N 1.000 106 0% 95 23.2% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_hydro_85 GAA 2548 genome.wustl.edu 37 17 78092148 78092148 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000152.3 +1 reviewed p.A880T 1.000 64 0% 50 28% 137 20.4% probably_damaging(0.981) tolerated(0.17) deleterious(0.484) NULL RNF213 57674 genome.wustl.edu 37 17 78307927 78307927 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000508628 +1 known p.R1389H 0.000 102 0% 77 14.3% 11 9% probably_damaging(0.995) tolerated(0.14) deleterious(0.707) NULL RNF213 57674 genome.wustl.edu 37 17 78337501 78337501 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000508628 +1 known p.K3887N 0.971 38 2.6% 19 36.8% 36 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL RPTOR 57521 genome.wustl.edu 37 17 78796930 78796930 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020761.2 +1 reviewed p.R348Q 0.998 230 0% 216 31% 3 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL NPLOC4 55666 genome.wustl.edu 37 17 79526380 79526380 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017921.2 -1 validated p.T578A 0.000 23 0% 26 26.9% 92 32.6% benign(0) tolerated(1) - superfamily_NZF domain ENSG00000215726 0 genome.wustl.edu 37 18 697167 697167 + RNA SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000508278 +1 novel NULL 0.001 83 0% 72 26.4% 0 - - - - - MYOM1 8736 genome.wustl.edu 37 18 3102488 3102488 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003803.3 -1 reviewed p.E1187K 1.000 162 0.6% 127 24.4% 0 - benign(0.122) tolerated(0.34) neutral(0.033) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin PIEZO2 63895 genome.wustl.edu 37 18 10680225 10680225 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000503781 -1 known p.F422L 1.000 281 0% 335 15.8% 0 - benign(0.001) tolerated(0.48) neutral(0.011) NULL ZNF519 162655 genome.wustl.edu 37 18 14106149 14106149 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145287.3 -1 validated p.F130 0.000 156 0% 172 12.2% 0 - - - - NULL POTEC 388468 genome.wustl.edu 37 18 14530553 14530553 + Splice_Site SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001137671.1 -1 validated e6-1 0.015 128 0% 166 13.3% 0 - - - - - CABLES1 91768 genome.wustl.edu 37 18 20815911 20815911 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001100619.2 +1 validated p.R413I 1.000 347 0% 258 20.9% 17 23.5% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) NULL RIOK3 8780 genome.wustl.edu 37 18 21044055 21044055 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003831.3 +1 reviewed p.K102Q 1.000 326 0% 302 23.2% 8 50% possibly_damaging(0.95) tolerated(0.18) neutral(0.450) NULL LAMA3 3909 genome.wustl.edu 37 18 21329415 21329415 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198129.1 +1 reviewed p.E197* 0.998 191 0.5% 169 32.5% 0 - - - - HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like TTC39C 125488 genome.wustl.edu 37 18 21660643 21660643 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135993.1 +1 validated p.K185N 1.000 201 0% 175 25.1% 3 0% benign(0.13) tolerated(0.18) neutral(0.067) HMMPfam_Deme6 IMPACT 55364 genome.wustl.edu 37 18 22007965 22007965 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018439.3 +1 validated p.R40I 1.000 333 0% 299 17.7% 4 0% benign(0.322) deleterious(0.01) deleterious(0.507) HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like HRH4 59340 genome.wustl.edu 37 18 22056740 22056740 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021624.3 +1 reviewed p.V129 0.000 380 0% 325 11.7% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZNF521 25925 genome.wustl.edu 37 18 22671956 22671956 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015461.2 -1 validated p.E1250K 1.000 253 0% 232 10.8% 3 0% possibly_damaging(0.928) tolerated(0.12) deleterious(0.636) NULL ASXL3 80816 genome.wustl.edu 37 18 31324930 31324930 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030632.1 +1 provisional p.Q1706 0.010 102 0% 62 33.9% 0 - - - - NULL DTNA 1837 genome.wustl.edu 37 18 32345948 32345948 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001390.4 +1 reviewed p.R31* 1.000 127 0% 130 29.2% 0 - - - - HMMPfam_efhand_1,superfamily_EF-hand MAPRE2 10982 genome.wustl.edu 37 18 32720380 32720380 + RNA SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_026570.1 +1 reviewed NULL 1.000 75 1.3% 55 29.1% 6 0% - - - - ZNF397 84307 genome.wustl.edu 37 18 32822582 32822582 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001135178.2 +1 reviewed p.R50C 1.000 62 0% 68 27.9% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SCAN,HMMSmart_SM00431 ZNF24 7572 genome.wustl.edu 37 18 32917280 32917280 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006965.2 -1 validated p.G341 1.000 175 0% 207 28% 5 20% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 GALNT1 2589 genome.wustl.edu 37 18 33269245 33269245 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020474.3 +1 reviewed p.I323M 0.997 164 0.6% 194 38.1% 38 60.5% benign(0) tolerated(0.98) - superfamily_Nucleotide-diphospho-sugar transferases MOCOS 55034 genome.wustl.edu 37 18 33785150 33785150 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017947.2 +1 validated p.D377N 0.995 194 0% 170 32.4% 4 50% benign(0.008) tolerated(0.3) neutral(0.029) HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases EPG5 57724 genome.wustl.edu 37 18 43505847 43505847 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020964.2 -1 validated p.E859* 1.000 146 0% 138 26.8% 0 - - - - NULL KATNAL2 83473 genome.wustl.edu 37 18 44595965 44595965 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031303.2 +1 validated p.L262 0.886 138 0% 103 10.7% 7 28.5% - - - HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540 CCDC11 220136 genome.wustl.edu 37 18 47753754 47753754 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145020.3 -1 validated p.P514 0.000 242 0.4% 213 17.8% 13 23% - - - NULL SKA1 220134 genome.wustl.edu 37 18 47911709 47911709 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039535.2 +1 validated p.F145L 0.018 230 0% 216 16.2% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_DUF1395 ALPK2 115701 genome.wustl.edu 37 18 56246925 56246925 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052947.3 -1 validated p.D361 1.000 182 0% 126 18.3% 0 - - - - NULL PIGN 23556 genome.wustl.edu 37 18 59772809 59772809 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012327.5 -1 reviewed p.P609L 1.000 115 0% 96 10.4% 10 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PigN SERPINB3 6317 genome.wustl.edu 37 18 61325785 61325785 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006919.2 -1 validated p.R144Q 0.015 445 0% 490 19.4% 0 - benign(0.149) deleterious(0.05) neutral(0.358) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins DSEL 92126 genome.wustl.edu 37 18 65178587 65178587 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032160.2 -1 validated p.E1097* 1.000 66 0% 68 32.4% 1 0% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases DSEL 92126 genome.wustl.edu 37 18 65180854 65180854 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032160.2 -1 validated p.D341A 1.000 141 0% 131 14.5% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CBLN2 147381 genome.wustl.edu 37 18 70205991 70205991 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182511.3 -1 validated p.G125D 1.000 219 0% 160 31.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like NETO1 81832 genome.wustl.edu 37 18 70526220 70526220 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138966.2 -1 reviewed p.R104* 1.000 204 0% 184 35.3% 0 - - - - HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain ZNF407 55628 genome.wustl.edu 37 18 72347213 72347213 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017757.2 +1 reviewed p.R1413Q 0.142 171 0% 148 29.1% 1 0% probably_damaging(1) tolerated(0.05) deleterious(0.845) superfamily_C2H2 and C2HC zinc fingers ZNF236 7776 genome.wustl.edu 37 18 74616384 74616384 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007345.3 +1 validated p.N646T 1.000 287 0% 242 21.5% 1 100% benign(0.024) tolerated(0.55) neutral(0.008) NULL ADNP2 22850 genome.wustl.edu 37 18 77895914 77895914 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014913.3 +1 validated p.R873Q 0.000 52 0% 37 13.5% 41 4.8% benign(0) tolerated(0.72) neutral(0.002) NULL MUM1 84939 genome.wustl.edu 37 19 1357055 1357055 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032853.3 +1 validated p.E36D 0.023 510 0% 503 34.2% 1 100% benign(0.414) tolerated(0.32) neutral(0.158) NULL IZUMO4 113177 genome.wustl.edu 37 19 2097157 2097157 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039846.1 +1 validated p.K71 0.999 30 0% 25 24% 7 0% - - - NULL TJP3 27134 genome.wustl.edu 37 19 3748047 3748047 + Missense_Mutation SNP C C T rs182553957 by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014428.1 +1 provisional p.R893C 0.248 11 0% 13 61.5% 52 48% possibly_damaging(0.532) deleterious(0.01) deleterious(0.586) NULL EEF2 1938 genome.wustl.edu 37 19 3976737 3976737 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001961.3 -1 reviewed p.A798T 1.000 37 0% 17 23.5% 5444 29.6% benign(0.017) tolerated(0.14) neutral(0.250) HMMPfam_EFG_C,superfamily_EF-G C-terminal domain-like FSD1 79187 genome.wustl.edu 37 19 4306197 4306197 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024333.2 +1 reviewed p.A38 0.051 51 0% 38 15.8% 2 0% - - - HMMSmart_BBC DENND1C 79958 genome.wustl.edu 37 19 6477127 6477127 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024898.2 -1 validated p.F175 1.000 48 0% 63 19% 1 0% - - - HMMPfam_DENN,HMMSmart_DENN C3 718 genome.wustl.edu 37 19 6692943 6692943 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000064.2 -1 reviewed p.E1128* 1.000 115 0% 123 21.1% 352 0.8% - - - superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp ZNF557 79230 genome.wustl.edu 37 19 7081448 7081448 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001044387.1 +1 validated p.L109I 0.004 139 0% 140 32.1% 1 0% benign(0.019) tolerated(0.49) neutral(0.011) NULL FCER2 2208 genome.wustl.edu 37 19 7755382 7755382 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002002.4 -1 validated p.F177 0.960 78 0% 44 25% 1 0% - - - HMMSmart_SM00034,superfamily_C-type lectin-like CD209 30835 genome.wustl.edu 37 19 7806673 7806673 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_026692.1 -1 reviewed NULL 1.000 55 0% 74 21.6% 0 - - - - - MUC16 94025 genome.wustl.edu 37 19 9063714 9063714 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024690.2 -1 validated p.P7911H 0.000 532 0.2% 387 31% 4 50% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9074387 9074387 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024690.2 -1 validated p.I4353 0.000 276 0% 233 33.5% 6 33.3% - - - NULL MUC16 94025 genome.wustl.edu 37 19 9086311 9086311 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024690.2 -1 validated p.L1835R 0.002 194 0% 172 19.2% 0 - unknown(0) - - NULL OR7G1 125962 genome.wustl.edu 37 19 9225792 9225792 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005192.1 -1 provisional p.F216L 0.007 113 0% 85 20% 0 - benign(0.155) tolerated(0.36) neutral(0.034) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR7G1 125962 genome.wustl.edu 37 19 9225897 9225897 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001005192.1 -1 provisional p.V181 0.000 112 0% 111 31.5% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR7G3 390883 genome.wustl.edu 37 19 9237021 9237021 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001958.1 -1 provisional p.V202 0.000 73 0% 55 12.7% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 OR7D2 162998 genome.wustl.edu 37 19 9297203 9297203 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175883.1 +1 provisional p.S249F 0.030 82 1.2% 93 37.6% 0 - benign(0.042) tolerated(0.08) neutral(0.302) HMMPfam_7tm_1,superfamily_SSF81321 ZNF559 84527 genome.wustl.edu 37 19 9453298 9453298 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032497.1 +1 provisional p.I391V 0.044 86 0% 73 11% 0 - benign(0.001) tolerated(0.32) neutral(0.024) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF560 147741 genome.wustl.edu 37 19 9577764 9577764 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152476.2 -1 validated p.R620Q 0.000 225 0% 231 32.5% 0 - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF561 93134 genome.wustl.edu 37 19 9721251 9721251 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152289.2 -1 validated p.K362N 1.000 272 0% 262 35.9% 13 69.2% benign(0.002) deleterious(0) neutral(0.445) superfamily_SSF57667 ZNF812 729648 genome.wustl.edu 37 19 9801205 9801205 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001726949.2 -1 model p.R252Q 0.010 348 0.3% 261 21.1% 1 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF812 729648 genome.wustl.edu 37 19 9801609 9801609 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001726949.2 -1 model p.E117D 0.682 104 0% 101 41.6% 0 - benign(0.066) tolerated(0.06) neutral(0.327) superfamily_C2H2 and C2HC zinc fingers DNMT1 1786 genome.wustl.edu 37 19 10265276 10265276 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001130823.1 -1 reviewed p.V606 1.000 50 2% 45 33.3% 81 37% - - - NULL ZNF491 126069 genome.wustl.edu 37 19 11917104 11917104 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152356.3 +1 validated p.F112 0.665 119 0% 114 23.7% 0 - - - - HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF491 126069 genome.wustl.edu 37 19 11917556 11917556 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152356.3 +1 validated p.R263I 0.998 108 0% 125 32% 0 - benign(0.049) tolerated(0.08) neutral(0.303) HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF788 388507 genome.wustl.edu 37 19 12222110 12222110 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000430298 +1 known p.E60D 0.000 90 0% 87 26.4% 0 - possibly_damaging(0.478) tolerated(0.12) neutral(0.418) HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF136 7695 genome.wustl.edu 37 19 12298195 12298195 + Missense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003437.2 +1 validated p.K334N 0.990 158 0% 124 11.3% 5 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_SSF57667 ZNF799 90576 genome.wustl.edu 37 19 12502070 12502070 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080821.1 -1 validated p.R381Q 0.000 304 0% 303 28.7% 3 66.6% probably_damaging(1) tolerated(0.94) deleterious(0.500) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers CYP4F2 8529 genome.wustl.edu 37 19 16001217 16001217 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001082.3 -1 reviewed p.E184 0.099 149 0% 121 17.4% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 CYP4F11 57834 genome.wustl.edu 37 19 16032884 16032884 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001128932.1 -1 reviewed p.E360* 0.808 218 0% 198 28.8% 4 0% - - - HMMPfam_p450,superfamily_Cytochrome P450 CYP4F11 57834 genome.wustl.edu 37 19 16038052 16038052 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001128932.1 -1 reviewed p.K165N 0.988 137 0% 138 11.6% 4 0% benign(0.109) tolerated(0.07) neutral(0.328) HMMPfam_p450,superfamily_Cytochrome P450 ANO8 57719 genome.wustl.edu 37 19 17444521 17444521 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020959.2 -1 validated p.C65 0.994 27 0% 23 17.4% 62 38.7% - - - NULL RFXANK 8625 genome.wustl.edu 37 19 19312471 19312471 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003721.2 +1 reviewed p.I242 0.699 66 0% 57 36.8% 338 37.5% - - - HMMSmart_SM00248,superfamily_Ankyrin repeat ZNF101 94039 genome.wustl.edu 37 19 19790703 19790703 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033204.2 +1 provisional p.R302I 0.220 72 0% 70 22.9% 0 - benign(0.076) tolerated(0.08) neutral(0.305) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF14 7561 genome.wustl.edu 37 19 19822466 19822466 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021030.2 -1 reviewed p.R542C 0.004 123 0% 100 27% 1 0% benign(0.007) tolerated(0.21) neutral(0.044) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF506 440515 genome.wustl.edu 37 19 19905509 19905509 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099269.2 -1 validated p.P396L 0.983 174 0% 139 20.1% 1 0% possibly_damaging(0.785) deleterious(0.04) deleterious(0.643) superfamily_SSF57667 ZNF429 353088 genome.wustl.edu 37 19 21720354 21720354 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001415.2 +1 provisional p.K500T 0.941 50 0% 45 31.1% 1 0% possibly_damaging(0.851) deleterious(0.01) deleterious(0.733) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF208 7757 genome.wustl.edu 37 19 22157113 22157113 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007153.3 -1 provisional p.F241L 0.000 47 0% 61 14.8% 0 - benign(0.002) tolerated(0.66) neutral(0.003) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF257 113835 genome.wustl.edu 37 19 22271062 22271062 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033468.2 +1 provisional p.K170N 0.002 189 0% 185 28.1% 0 - possibly_damaging(0.589) tolerated(0.14) neutral(0.453) superfamily_C2H2 and C2HC zinc fingers LOC100287226 100287226 genome.wustl.edu 37 19 22498979 22498979 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002343636.1 +1 model p.F787L 0.000 40 0% 43 25.6% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF98 148198 genome.wustl.edu 37 19 22574542 22574542 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098626.1 -1 validated p.F499V 0.429 74 0% 78 19.2% 0 - probably_damaging(0.97) deleterious(0) deleterious(0.857) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF730 100129543 genome.wustl.edu 37 19 23328352 23328352 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001719792.2 +1 model p.S211L 0.004 61 0% 85 28.2% 0 - benign(0) tolerated(0.06) neutral(0.323) superfamily_C2H2 and C2HC zinc fingers ZNF91 7644 genome.wustl.edu 37 19 23543607 23543607 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003430.2 -1 validated p.R725Q 0.000 93 0% 113 11.5% 0 - possibly_damaging(0.628) tolerated(0.35) neutral(0.239) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF675 171392 genome.wustl.edu 37 19 23836388 23836388 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138330.2 -1 validated p.K449N 1.000 109 0% 95 18.9% 1 0% benign(0.055) deleterious(0) neutral(0.448) superfamily_C2H2 and C2HC zinc fingers ENSG00000104777 0 genome.wustl.edu 37 19 24102077 24102077 + RNA SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000300996 -1 known NULL 0.018 76 0% 92 16.3% 0 - - - - - ENSG00000104777 0 genome.wustl.edu 37 19 24102355 24102355 + RNA SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000300996 -1 known NULL 0.003 39 0% 72 19.4% 0 - - - - - WDR88 126248 genome.wustl.edu 37 19 33655169 33655169 + Nonsense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173479.3 +1 validated p.K383* 1.000 366 0% 299 29.8% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 CHST8 64377 genome.wustl.edu 37 19 34263906 34263906 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127895.1 +1 validated p.D405N 1.000 61 0% 31 32.3% 0 - possibly_damaging(0.62) tolerated(0.2) neutral(0.265) HMMPfam_Sulfotransfer_2 KIAA0355 9710 genome.wustl.edu 37 19 34832561 34832561 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014686.3 +1 validated p.S574 0.554 181 0% 146 21.9% 5 40% - - - NULL ZNF599 148103 genome.wustl.edu 37 19 35250250 35250250 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001007248.2 -1 validated p.K486Q 1.000 187 0% 223 20.6% 1 0% benign(0.151) deleterious(0) neutral(0.458) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF792 126375 genome.wustl.edu 37 19 35449483 35449483 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_175872.4 -1 validated p.E426K 0.446 195 0% 122 33.6% 2 50% possibly_damaging(0.931) tolerated(0.11) deleterious(0.649) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers WDR62 284403 genome.wustl.edu 37 19 36590454 36590454 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001083961.1 +1 validated p.E892K 0.011 29 0% 34 29.4% 1 0% benign(0.052) tolerated(0.65) neutral(0.006) NULL ZFP14 57677 genome.wustl.edu 37 19 36832405 36832405 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020917.1 -1 provisional p.R108I 0.590 100 0% 121 16.5% 0 - benign(0.035) tolerated(0.24) neutral(0.040) NULL ZNF382 84911 genome.wustl.edu 37 19 37117864 37117864 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032825.3 +1 validated p.I355 0.000 73 0% 65 23.1% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF345 25850 genome.wustl.edu 37 19 37369179 37369179 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003419.3 +1 provisional p.E483K 0.005 24 0% 19 42.1% 0 - benign(0.005) tolerated(0.18) neutral(0.056) superfamily_SSF57667 ZNF585B 92285 genome.wustl.edu 37 19 37677843 37677843 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152279.3 -1 validated p.S199L 0.000 284 0% 277 34.7% 0 - probably_damaging(0.998) tolerated(0.08) deleterious(0.774) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF383 163087 genome.wustl.edu 37 19 37734379 37734379 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152604.1 +1 provisional p.R414I 1.000 140 0% 147 14.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF781 163115 genome.wustl.edu 37 19 38160221 38160221 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152605.3 -1 validated p.E277* 0.970 238 0% 211 35.5% 0 - - - - NULL WDR87 83889 genome.wustl.edu 37 19 38384338 38384338 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031951.3 -1 provisional p.L630F 0.998 69 0% 68 32.4% 0 - probably_damaging(0.998) - - superfamily_WD40 repeat-like SIPA1L3 23094 genome.wustl.edu 37 19 38579377 38579377 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015073.1 +1 validated p.F517 0.998 112 0% 98 23.5% 20 35% - - - superfamily_SSF111347 EID2 163126 genome.wustl.edu 37 19 40030251 40030251 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153232.3 -1 validated p.L157I 0.996 100 0% 93 10.8% 13 7.6% possibly_damaging(0.945) tolerated(0.36) neutral(0.410) NULL ZNF780A 284323 genome.wustl.edu 37 19 40580955 40580955 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142577.1 -1 validated p.R466Q 0.005 231 0% 240 27.1% 1 0% benign(0.08) tolerated(0.13) neutral(0.258) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers LTBP4 8425 genome.wustl.edu 37 19 41111046 41111046 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000308370 +1 known p.G186V 0.009 36 0% 27 29.6% 6 16.6% benign(0.328) deleterious(0) deleterious(0.547) superfamily_SSF57196 LTBP4 8425 genome.wustl.edu 37 19 41133070 41133070 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042544.1 +1 reviewed p.S1459L 0.894 51 0% 44 18.2% 24 0% - - - NULL CYP2B7P1 1556 genome.wustl.edu 37 19 41442006 41442006 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NR_001278.1 +1 provisional NULL 0.000 115 0% 104 38.5% 0 - benign(0.272) tolerated(0.19) neutral(0.079) - CYP2F1 1572 genome.wustl.edu 37 19 41627442 41627442 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000774.3 +1 reviewed p.F188 1.000 103 0% 75 17.3% 1 0% - - - HMMPfam_p450,superfamily_Cytochrome P450 HNRNPUL1 11100 genome.wustl.edu 37 19 41778079 41778079 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007040.3 +1 reviewed p.R171* 1.000 104 0% 121 18.2% 21 0% - - - NULL CEACAM4 1089 genome.wustl.edu 37 19 42126053 42126053 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001817.2 -1 validated p.P220L 0.002 78 0% 68 20.6% 0 - possibly_damaging(0.824) deleterious(0) deleterious(0.756) NULL PSG11 5680 genome.wustl.edu 37 19 43519485 43519485 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002785.2 -1 validated p.T249 0.001 129 0% 135 36.3% 0 - - - - HMMSmart_SM00409,superfamily_Immunoglobulin ZNF233 353355 genome.wustl.edu 37 19 44778622 44778622 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181756.1 +1 provisional p.W603C 0.000 194 0% 174 28.2% 0 - probably_damaging(0.958) deleterious(0.04) deleterious(0.750) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PVR 5817 genome.wustl.edu 37 19 45150779 45150779 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006505.3 +1 reviewed p.T122P 0.991 52 1.9% 38 13.2% 35 2.8% probably_damaging(0.994) tolerated(0.08) deleterious(0.752) HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin APOC1 341 genome.wustl.edu 37 19 45422440 45422440 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001645.3 +1 reviewed p.S69P 0.000 84 0% 55 25.5% 83 2.4% possibly_damaging(0.913) deleterious(0.01) deleterious(0.770) HMMPfam_ApoC-I EXOC3L2 90332 genome.wustl.edu 37 19 45728068 45728068 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138568.3 -1 validated p.V170I 0.226 35 0% 23 30.4% 5 0% benign(0.009) tolerated(0.86) neutral(0.001) HMMPfam_Sec6 PPP1R13L 10848 genome.wustl.edu 37 19 45888875 45888875 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142502.1 -1 validated p.F731 0.989 18 0% 14 50% 178 30.8% - - - superfamily_Ankyrin repeat PPP1R13L 10848 genome.wustl.edu 37 19 45889209 45889209 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001142502.1 -1 validated p.D652N 1.000 62 0% 46 19.6% 67 47.7% unknown(0) tolerated(0.13) - superfamily_Ankyrin repeat ARHGAP35 2909 genome.wustl.edu 37 19 47424921 47424921 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004491.4 +1 reviewed p.R997* 1.000 52 0% 56 41.1% 5 0% - - - NULL CABP5 56344 genome.wustl.edu 37 19 48543866 48543866 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019855.3 -1 reviewed p.M78I 1.000 79 0% 60 23.3% 0 - benign(0.053) tolerated(0.31) neutral(0.030) superfamily_SSF47473 SLC17A7 57030 genome.wustl.edu 37 19 49936215 49936215 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020309.3 -1 reviewed p.K290N 1.000 37 0% 29 17.2% 1 100% possibly_damaging(0.49) tolerated(0.17) neutral(0.222) HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter CPT1C 126129 genome.wustl.edu 37 19 50200582 50200582 + Splice_Site SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152359.1 +1 provisional e2-1 1.000 182 0% 139 30.2% 0 - - - - - KLK15 55554 genome.wustl.edu 37 19 51330241 51330241 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017509.2 -1 reviewed p.A125V 0.378 11 0% 19 36.8% 0 - benign(0) tolerated(1) - HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases KLK8 11202 genome.wustl.edu 37 19 51503732 51503732 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144505.1 -1 reviewed p.G105S 1.000 35 0% 28 14.3% 11 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys KLK11 11012 genome.wustl.edu 37 19 51525871 51525871 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144947.1 -1 reviewed p.R260Q 0.000 196 0% 139 37.4% 45 44.4% benign(0.051) tolerated(0.29) neutral(0.032) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases ZNF649 65251 genome.wustl.edu 37 19 52394192 52394192 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_023074.3 -1 validated p.E399D 1.000 154 0% 110 19.1% 5 40% probably_damaging(0.989) deleterious(0) deleterious(0.884) superfamily_SSF57667 ZNF432 9668 genome.wustl.edu 37 19 52496734 52496734 + Splice_Site SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000391793 -1 known e5+2 0.025 212 0.5% 177 23.7% 2 100% - - - - ZNF841 284371 genome.wustl.edu 37 19 52568641 52568641 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136499.1 -1 validated p.E832K 0.000 143 0% 172 20.9% 3 0% possibly_damaging(0.647) tolerated(0.34) neutral(0.250) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF841 284371 genome.wustl.edu 37 19 52568679 52568679 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136499.1 -1 validated p.K819R 0.760 100 0% 127 25.2% 2 0% possibly_damaging(0.883) deleterious(0.03) deleterious(0.710) superfamily_SSF57667 ZNF841 284371 genome.wustl.edu 37 19 52569857 52569857 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136499.1 -1 validated p.K426N 0.996 188 0% 147 31.3% 4 25% benign(0.395) deleterious(0) deleterious(0.572) superfamily_SSF57667 ZNF616 90317 genome.wustl.edu 37 19 52618711 52618711 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_178523.3 -1 validated p.R569I 0.204 246 0% 185 20.5% 3 33.3% benign(0) tolerated(0.21) neutral(0.044) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF480 147657 genome.wustl.edu 37 19 52825255 52825255 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_144684.2 +1 validated p.R251I 0.080 54 0% 68 22.1% 1 0% probably_damaging(0.977) tolerated(0.12) deleterious(0.679) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF880 400713 genome.wustl.edu 37 19 52887563 52887563 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145434.1 +1 validated p.E244* 0.003 113 0% 80 31.2% 5 80% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF528 84436 genome.wustl.edu 37 19 52918494 52918494 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032423.2 +1 validated p.S130Y 0.000 108 0% 114 15.8% 1 0% benign(0.017) tolerated(0.18) neutral(0.057) NULL ZNF528 84436 genome.wustl.edu 37 19 52919807 52919807 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032423.2 +1 validated p.L568F 0.001 135 0% 153 23.5% 3 33.3% possibly_damaging(0.469) deleterious(0.01) deleterious(0.559) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF808 388558 genome.wustl.edu 37 19 53057509 53057509 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039886.3 +1 validated p.R447I 0.237 97 0% 109 23.9% 1 0% possibly_damaging(0.814) tolerated(0.15) deleterious(0.548) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF808 388558 genome.wustl.edu 37 19 53058010 53058010 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001039886.3 +1 validated p.K614T 0.061 96 0% 73 21.9% 1 0% possibly_damaging(0.912) deleterious(0.03) deleterious(0.728) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF600 162966 genome.wustl.edu 37 19 53270044 53270044 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198457.2 -1 validated p.R322I 0.983 112 0% 123 10.6% 0 - probably_damaging(0.953) tolerated(0.17) neutral(0.456) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF665 79788 genome.wustl.edu 37 19 53678789 53678789 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024733.3 -1 provisional p.F17L 0.998 380 0% 312 17% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) VN1R2 317701 genome.wustl.edu 37 19 53762651 53762651 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173856.2 +1 validated p.F341 0.000 386 0% 295 22.7% 0 - - - - superfamily_SSF81321 MIR525 574470 genome.wustl.edu 37 19 54200844 54200844 + RNA SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000384978 +1 known NULL 0.006 273 0% 300 29.7% 0 - - - - - NLRP2 55655 genome.wustl.edu 37 19 55493031 55493031 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017852.3 +1 validated p.V148 0.001 188 0% 217 16.1% 3 0% - - - NULL PTPRH 5794 genome.wustl.edu 37 19 55708741 55708741 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002842.3 -1 validated p.K578N 0.000 86 0% 91 16.5% 4 0% benign(0.001) tolerated(0.38) neutral(0.018) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III FIZ1 84922 genome.wustl.edu 37 19 56103870 56103870 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032836.2 -1 reviewed p.F479L 1.000 17 0% 11 36.4% 53 22.6% possibly_damaging(0.945) deleterious(0.01) deleterious(0.795) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers RFPL4A 342931 genome.wustl.edu 37 19 56274033 56274033 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145014.1 +1 validated p.R119Q 0.000 222 0.5% 203 14.8% 0 - probably_damaging(0.985) tolerated(0.39) neutral(0.448) HMMSmart_PRY NLRP4 147945 genome.wustl.edu 37 19 56382215 56382215 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_134444.4 +1 validated p.E793K 0.000 218 0% 168 23.2% 0 - benign(0.005) tolerated(0.8) neutral(0.001) superfamily_RNI-like NLRP5 126206 genome.wustl.edu 37 19 56549468 56549468 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153447.4 +1 reviewed p.S898Y 0.000 133 0% 127 34.6% 0 - possibly_damaging(0.773) tolerated(0.46) neutral(0.299) superfamily_SSF52047 ZNF667 63934 genome.wustl.edu 37 19 56953008 56953008 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022103.3 -1 validated p.F452 0.329 95 0% 113 30.1% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF471 57573 genome.wustl.edu 37 19 57036103 57036103 + Frame_Shift_Del DEL G G - novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020813.2 +1 validated p.V223fs 0.000 - - - - - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF471 57573 genome.wustl.edu 37 19 57036281 57036281 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020813.2 +1 validated p.R282I 0.998 166 0% 126 31.7% 2 50% possibly_damaging(0.78) deleterious(0) deleterious(0.736) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF470 388566 genome.wustl.edu 37 19 57089299 57089299 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001668.3 +1 validated p.R501I 0.836 105 0% 86 12.8% 3 66.6% probably_damaging(0.972) deleterious(0) deleterious(0.859) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF470 388566 genome.wustl.edu 37 19 57089887 57089887 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001668.3 +1 validated p.R697Q 0.991 201 0% 171 32.2% 6 16.6% benign(0.002) tolerated(0.11) neutral(0.272) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 PEG3 5178 genome.wustl.edu 37 19 57326787 57326787 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006210.2 -1 reviewed p.R1008H 0.389 135 0% 92 17.4% 0 - benign(0.164) tolerated(0.17) neutral(0.074) NULL USP29 57663 genome.wustl.edu 37 19 57640462 57640462 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020903.2 +1 validated p.K140T 0.000 102 0% 101 31.7% 0 - benign(0.009) tolerated(0.48) neutral(0.011) NULL ZIM3 114026 genome.wustl.edu 37 19 57647093 57647093 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_052882.1 -1 provisional p.F204 0.017 243 0% 274 31.4% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 LOC100288211 100288211 genome.wustl.edu 37 19 57828601 57828601 + Missense_Mutation SNP A A T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002343660.1 -1 model p.F110L 1.000 95 0% 142 32.4% 0 - - - - HMMPfam_DUF862 ZNF543 125919 genome.wustl.edu 37 19 57840401 57840401 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_213598.3 +1 validated p.R524Q 0.001 139 0% 107 20.6% 4 50% probably_damaging(1) tolerated(1) deleterious(0.500) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF548 147694 genome.wustl.edu 37 19 57910689 57910689 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152909.3 +1 validated p.F345C 0.002 135 0% 150 20% 3 66.6% benign(0.11) tolerated(0.18) neutral(0.065) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF17 7565 genome.wustl.edu 37 19 57932749 57932749 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006959.2 +1 validated p.R630I 0.012 89 0% 84 36.9% 1 0% possibly_damaging(0.832) deleterious(0) deleterious(0.762) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF419 79744 genome.wustl.edu 37 19 58004947 58004947 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098491.1 +1 validated p.R342I 0.972 169 0% 170 19.4% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) superfamily_C2H2 and C2HC zinc fingers ZNF416 55659 genome.wustl.edu 37 19 58084151 58084151 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017879.1 -1 provisional p.R374I 0.019 221 0% 171 19.9% 3 33.3% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF587 84914 genome.wustl.edu 37 19 58353907 58353907 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002343662.1 +1 model p.R566H 0.000 96 0% 98 17.3% 0 - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TRIM28 10155 genome.wustl.edu 37 19 59061329 59061329 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005762.2 +1 reviewed p.V707A 0.992 185 0% 116 22.4% 2666 35.7% possibly_damaging(0.435) deleterious(0) deleterious(0.587) HMMSmart_SM00297 ANGPT4 51378 genome.wustl.edu 37 20 896758 896758 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015985.2 -1 reviewed p.E34K 0.000 114 0% 81 32.1% 0 - benign(0.016) tolerated(0.93) neutral(0.001) NULL TMC2 117532 genome.wustl.edu 37 20 2552835 2552835 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080751.2 +1 validated p.E189* 0.695 201 0% 197 30.5% 0 - - - - NULL NOP56 10528 genome.wustl.edu 37 20 2637183 2637183 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006392.2 +1 reviewed p.D383N 1.000 80 0% 62 30.6% 84 35.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Nop,superfamily_SSF89124 VPS16 64601 genome.wustl.edu 37 20 2847076 2847076 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022575.2 +1 reviewed p.G792 1.000 186 0% 143 27.3% 75 33.3% - - - HMMPfam_Vps16_C SLC4A11 83959 genome.wustl.edu 37 20 3210276 3210276 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032034.3 -1 reviewed p.E562K 0.001 101 0% 69 10.1% 17 0% benign(0.03) tolerated(0.74) neutral(0.003) HMMPfam_HCO3_cotransp RASSF2 9770 genome.wustl.edu 37 20 4768399 4768399 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014737.2 -1 reviewed p.E231D 1.000 204 0% 179 25.1% 5 20% probably_damaging(0.966) deleterious(0.01) deleterious(0.814) HMMPfam_RA,HMMSmart_RA SLC23A2 9962 genome.wustl.edu 37 20 4837814 4837814 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005116.5 -1 reviewed p.K586T 1.000 339 0% 242 10.3% 6 33.3% benign(0) deleterious(0.03) neutral(0.364) NULL PAK7 57144 genome.wustl.edu 37 20 9525014 9525014 + Splice_Site SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020341.3 -1 reviewed e6+2 1.000 102 0% 79 17.7% 0 - - - - - ANKRD5 63926 genome.wustl.edu 37 20 10030145 10030145 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022096.4 +1 validated p.A310T 0.041 98 0% 95 42.1% 2 0% possibly_damaging(0.952) tolerated(0.4) neutral(0.412) superfamily_Ankyrin repeat FLRT3 23767 genome.wustl.edu 37 20 14307375 14307375 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013281.2 -1 reviewed p.N260D 1.000 53 0% 39 12.8% 1 0% possibly_damaging(0.474) tolerated(0.36) neutral(0.176) HMMPfam_LRR_1,superfamily_SSF52058 KIF16B 55614 genome.wustl.edu 37 20 16359781 16359781 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024704.3 -1 validated p.L956F 1.000 425 0% 302 18.5% 3 33.3% probably_damaging(1) tolerated(0.11) deleterious(0.772) NULL SEC23B 10483 genome.wustl.edu 37 20 18516317 18516317 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006363.4 +1 reviewed p.T445 0.801 455 0% 388 23.5% 142 32.3% - - - HMMPfam_Sec23_BS,superfamily_SSF81995 RALGAPA2 57186 genome.wustl.edu 37 20 20618075 20618075 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020343.2 -1 validated p.R246Q 1.000 143 0% 126 32.5% 2 0% possibly_damaging(0.883) tolerated(0.16) neutral(0.404) NULL SSTR4 6754 genome.wustl.edu 37 20 23017066 23017066 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001052.2 +1 validated p.D316N 1.000 141 0% 125 20.8% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) superfamily_SSF81321 MYLK2 85366 genome.wustl.edu 37 20 30409359 30409359 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033118.3 +1 reviewed p.K197N 0.182 88 0% 66 13.6% 0 - benign(0.155) tolerated(0.22) neutral(0.056) NULL MYLK2 85366 genome.wustl.edu 37 20 30414693 30414693 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033118.3 +1 reviewed p.D392 0.459 178 0.6% 150 16% 0 - - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase BPIFB3 359710 genome.wustl.edu 37 20 31647832 31647832 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182658.1 +1 provisional p.F174L 0.574 47 2.1% 30 36.7% 0 - benign(0) tolerated(0.84) neutral(0.001) HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom NCOA6 23054 genome.wustl.edu 37 20 33328940 33328940 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014071.2 -1 reviewed p.K1707T 1.000 199 0% 165 30.9% 67 71.6% probably_damaging(0.978) deleterious(0) deleterious(0.865) NULL NCOA6 23054 genome.wustl.edu 37 20 33330455 33330455 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014071.2 -1 reviewed p.A1202V 1.000 341 0.3% 301 21.9% 14 21.4% possibly_damaging(0.782) deleterious(0.03) deleterious(0.657) NULL RBM12 10137 genome.wustl.edu 37 20 34241893 34241893 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006047.4 -1 reviewed p.K451R 1.000 112 0% 120 23.3% 1 0% possibly_damaging(0.771) tolerated(0.28) neutral(0.318) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD DSN1 79980 genome.wustl.edu 37 20 35386968 35386968 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001145315.1 -1 reviewed p.I215L 0.998 92 0% 82 31.7% 1 0% possibly_damaging(0.753) tolerated(0.1) deleterious(0.563) HMMPfam_Mis12_component ACTR5 79913 genome.wustl.edu 37 20 37380813 37380813 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024855.3 +1 validated p.G215 1.000 112 0% 78 29.5% 6 50% - - - HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 DHX35 60625 genome.wustl.edu 37 20 37647508 37647508 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021931.2 +1 reviewed p.L488F 1.000 213 0% 198 25.8% 8 12.5% probably_damaging(0.998) tolerated(0.19) deleterious(0.524) HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases TOP1 7150 genome.wustl.edu 37 20 39709861 39709861 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003286.2 +1 reviewed p.R163I 1.000 360 0% 336 18.8% 3 66.6% possibly_damaging(0.901) tolerated(0.26) neutral(0.391) NULL GDAP1L1 78997 genome.wustl.edu 37 20 42893281 42893281 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000396831 +1 known p.P226L 0.001 38 0% 27 22.2% 0 - unknown(0) - - NULL ADA 100 genome.wustl.edu 37 20 43248985 43248985 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000022.2 -1 reviewed p.D345N 0.000 216 0% 185 27.6% 9 44.4% benign(0) tolerated(0.52) neutral(0.009) HMMPfam_A_deaminase,superfamily_SSF51556 STK4 6789 genome.wustl.edu 37 20 43610567 43610567 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006282.2 +1 reviewed p.R115* 1.000 513 0% 482 12% 1 0% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase RBPJL 11317 genome.wustl.edu 37 20 43940866 43940866 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014276.2 +1 reviewed p.F150 0.997 40 0% 35 45.7% 0 - - - - superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind ZNF334 55713 genome.wustl.edu 37 20 45131026 45131026 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018102.3 -1 validated p.E318K 1.000 141 0% 102 34.3% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_SSF57667 MIR1302-5 100302146 genome.wustl.edu 37 20 49231306 49231306 + RNA SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000408164 -1 known NULL 0.017 58 0% 49 18.4% 0 - - - - - BCAS1 8537 genome.wustl.edu 37 20 52569996 52569996 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003657.2 -1 reviewed p.S552F 0.998 242 0% 230 20% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL FAM209B 388799 genome.wustl.edu 37 20 55108463 55108463 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001013646.2 +1 predicted p.F22L 0.939 93 0% 78 26.9% 0 - possibly_damaging(0.792) deleterious(0) deleterious(0.742) NULL BMP7 655 genome.wustl.edu 37 20 55803379 55803379 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001719.2 -1 reviewed p.E173K 1.000 115 0.9% 81 27.2% 1 100% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_TGFb_propeptide CTCFL 140690 genome.wustl.edu 37 20 56083819 56083819 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080618.2 -1 reviewed p.R506H 0.974 230 0.4% 195 30.8% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SYCP2 10388 genome.wustl.edu 37 20 58448965 58448965 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014258.2 -1 reviewed p.K1167N 0.004 429 0.2% 402 29.1% 0 - possibly_damaging(0.944) tolerated(0.09) deleterious(0.685) NULL SYCP2 10388 genome.wustl.edu 37 20 58461866 58461866 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014258.2 -1 reviewed p.E796D 0.449 293 0% 348 18.1% 0 - benign(0.026) tolerated(0.48) neutral(0.011) NULL SYCP2 10388 genome.wustl.edu 37 20 58467060 58467060 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014258.2 -1 reviewed p.S783 0.031 206 0.5% 207 12.1% 0 - - - - NULL FAM217B 63939 genome.wustl.edu 37 20 58519298 58519298 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022106.1 +1 predicted p.S100 0.030 96 0% 117 18.8% 1 0% - - - NULL YTHDF1 54915 genome.wustl.edu 37 20 61833723 61833723 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_017798.3 -1 validated p.I523 0.997 254 0% 216 28.2% 24 33.3% - - - HMMPfam_YTH NRIP1 8204 genome.wustl.edu 37 21 16337152 16337152 + Nonsense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003489.3 -1 reviewed p.L1121* 0.140 140 0% 191 17.8% 2 0% - - - NULL USP25 29761 genome.wustl.edu 37 21 17191118 17191118 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013396.3 +1 validated p.E345* 1.000 253 0.4% 243 19.3% 1 0% - - - HMMPfam_UCH,superfamily_Cysteine proteinases USP25 29761 genome.wustl.edu 37 21 17214748 17214748 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013396.3 +1 validated p.E742 1.000 120 0% 108 15.7% 1 0% - - - NULL NCAM2 4685 genome.wustl.edu 37 21 22656549 22656549 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004540.2 +1 reviewed p.P56S 1.000 245 0% 225 23.6% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 APP 351 genome.wustl.edu 37 21 27347519 27347519 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000484.3 -1 reviewed p.S441Y 1.000 181 0% 130 18.5% 672 29.6% unknown(0) deleterious(0) - superfamily_CAPPD an extracellular domain of amyloid beta A4 protein KRTAP19-3 337970 genome.wustl.edu 37 21 31864036 31864036 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181609.3 -1 validated p.F80L 0.015 156 0% 121 35.5% 0 - unknown(0) - - NULL KRTAP19-7 337974 genome.wustl.edu 37 21 31933555 31933555 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_181614.1 -1 provisional p.F18 0.000 259 0% 193 24.9% 0 - - - - NULL SCAF4 57466 genome.wustl.edu 37 21 33074089 33074089 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020706.2 -1 reviewed p.Q200 1.000 123 0% 88 30.7% 7 14.2% - - - NULL IL10RB 3588 genome.wustl.edu 37 21 34660443 34660443 + Silent SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000628.3 +1 reviewed p.L227 0.025 109 0% 81 17.3% 121 4.1% - - - NULL SON 6651 genome.wustl.edu 37 21 34921891 34921891 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138927.1 +1 reviewed p.K118N 1.000 51 0% 59 27.1% 1 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL SLC5A3 6526 genome.wustl.edu 37 21 35467809 35467809 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006933.4 +1 validated p.S104 0.677 299 0% 234 32.5% 1 0% - - - HMMPfam_SSF DOPEY2 9980 genome.wustl.edu 37 21 37653852 37653852 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005128.2 +1 validated p.F2035L 0.998 162 0% 144 18.8% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TTC3 7267 genome.wustl.edu 37 21 38519889 38519889 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001894.1 +1 validated p.D668Y 1.000 249 0% 222 29.3% 10 30% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Spectrin,superfamily_SSF48452 TTC3 7267 genome.wustl.edu 37 21 38525425 38525425 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000411496 +1 known p.E1* 0.190 95 0% 127 21.3% 2 50% possibly_damaging(0.517) deleterious(0) deleterious(0.619) NULL FLJ45139 400867 genome.wustl.edu 37 21 40250716 40250716 + RNA SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XR_078571.1 -1 model NULL 0.000 190 0% 161 21.1% 0 - - - - - BRWD1 54014 genome.wustl.edu 37 21 40559106 40559106 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018963.3 -1 reviewed p.R2270Q 1.000 193 0% 251 32.7% 1 100% possibly_damaging(0.951) deleterious(0) deleterious(0.839) superfamily_WD40 repeat-like LCA5L 150082 genome.wustl.edu 37 21 40781965 40781965 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152505.3 -1 validated p.E408* 0.028 610 0% 611 16.5% 0 - - - - NULL B3GALT5 10317 genome.wustl.edu 37 21 41032583 41032583 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006057.1 +1 reviewed p.E33* 0.001 280 0% 241 35.3% 1 100% - - - NULL IGSF5 150084 genome.wustl.edu 37 21 41164016 41164016 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001080444.1 +1 provisional p.Q346H 0.000 193 0% 155 11.6% 1 100% benign(0.016) tolerated(0.07) neutral(0.320) NULL DSCAM 1826 genome.wustl.edu 37 21 41452100 41452100 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001389.3 -1 validated p.E1467* 1.000 147 0% 149 10.1% 0 - - - - superfamily_Fibronectin type III RRP1B 23076 genome.wustl.edu 37 21 45096650 45096650 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015056.2 +1 validated p.F217 0.919 97 1% 85 16.5% 8 12.5% - - - HMMPfam_Nop52 TRPM2 7226 genome.wustl.edu 37 21 45833850 45833850 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003307.3 +1 reviewed p.A1013 0.000 123 0% 95 25.3% 19 0% - - - HMMPfam_Ion_trans TRPM2 7226 genome.wustl.edu 37 21 45838307 45838307 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003307.3 +1 reviewed p.K1110N 0.992 78 0% 80 18.8% 5 0% benign(0.202) tolerated(0.16) neutral(0.079) NULL ITGB2 3689 genome.wustl.edu 37 21 46314966 46314966 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000211.3 -1 reviewed p.E335K 0.982 70 0% 55 36.4% 80 5% benign(0) tolerated(0.72) neutral(0.002) HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,superfamily_SSF69179 ITGB2 3689 genome.wustl.edu 37 21 46320235 46320235 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000211.3 -1 reviewed p.F299 0.785 129 0% 85 18.8% 135 0.7% - - - HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300 FTCD 10841 genome.wustl.edu 37 21 47558817 47558817 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006657.2 -1 reviewed p.K427N 0.732 80 0% 64 29.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_FTCD_C,superfamily_Methenyltetrahydrofolate cyclohydrolase-like PCNT 5116 genome.wustl.edu 37 21 47786919 47786919 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006031.5 +1 reviewed p.T1010 0.000 93 0% 87 26.4% 4 50% - - - NULL PRODH 5625 genome.wustl.edu 37 22 18912670 18912670 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000457083 -1 known p.R111W 0.685 110 0% 90 23.3% 0 - unknown(0) - - NULL USP41 373856 genome.wustl.edu 37 22 20718500 20718500 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000292729 -1 known p.A281V 1.000 539 0% 388 19.8% 33 0% - - - HMMPfam_UCH,superfamily_Cysteine proteinases HIC2 23119 genome.wustl.edu 37 22 21799271 21799271 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015094.2 +1 validated p.S29 0.786 55 0% 51 9.8% 3 0% - - - superfamily_POZ domain TOP3B 8940 genome.wustl.edu 37 22 22312958 22312958 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000457270 -1 known p.S466L 0.731 158 0% 106 21.7% 37 27% - - - NULL PIWIL3 440822 genome.wustl.edu 37 22 25119195 25119195 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001008496.2 -1 validated p.K762N 1.000 245 0% 278 19.8% 0 - possibly_damaging(0.929) tolerated(0.06) deleterious(0.699) HMMPfam_Piwi,superfamily_RNaseH_fold MYO18B 84700 genome.wustl.edu 37 22 26164525 26164525 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032608.5 +1 reviewed p.E214 0.193 40 0% 51 23.5% 0 - - - - NULL SEZ6L 23544 genome.wustl.edu 37 22 26688507 26688507 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021115.4 +1 validated p.A77V 0.002 53 0% 38 39.5% 0 - benign(0.006) tolerated(0.11) neutral(0.272) NULL ZNRF3 84133 genome.wustl.edu 37 22 29445207 29445207 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032173.2 +1 validated p.A246 0.000 43 0% 41 14.6% 61 34.4% - - - NULL C22orf31 25770 genome.wustl.edu 37 22 29456529 29456529 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015370.1 -1 predicted p.S102 0.000 292 0% 247 27.9% 0 - - - - NULL RFPL1 5988 genome.wustl.edu 37 22 29837600 29837600 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021026.2 +1 validated p.R148Q 0.000 311 0.3% 268 19% 0 - probably_damaging(0.978) tolerated(0.42) neutral(0.434) HMMSmart_PRY ASCC2 84164 genome.wustl.edu 37 22 30221125 30221125 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_032204.3 -1 provisional p.R121Q 0.904 214 0% 164 27.4% 28 32.1% possibly_damaging(0.853) tolerated(0.11) deleterious(0.600) NULL LIMK2 3985 genome.wustl.edu 37 22 31663018 31663018 + Nonsense_Mutation SNP C C T rs114127458 byCluster;by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001031801.1 +1 reviewed p.R343* 1.000 237 0% 190 18.4% 27 14.8% - - - superfamily_Kinase_like,HMMPfam_Pkinase EIF4ENIF1 56478 genome.wustl.edu 37 22 31884620 31884620 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019843.3 -1 reviewed p.R29C 1.000 236 0% 218 29.4% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SFI1 9814 genome.wustl.edu 37 22 31952984 31952984 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001007467.1 +1 validated p.R201C 1.000 159 0% 127 26% 34 14.7% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC5A4 6527 genome.wustl.edu 37 22 32629009 32629009 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014227.2 -1 validated p.R300C 1.000 78 0% 44 15.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SSF RFPL3 10738 genome.wustl.edu 37 22 32756704 32756704 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001098535.1 +1 validated p.R280H 0.008 280 0.4% 240 24.6% 0 - possibly_damaging(0.858) tolerated(0.09) deleterious(0.627) HMMPfam_SPRY,HMMSmart_SPRY C22orf28 51493 genome.wustl.edu 37 22 32792233 32792233 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014306.4 -1 validated p.A273V 1.000 168 0% 123 37.4% 163 49% possibly_damaging(0.594) tolerated(0.06) deleterious(0.527) HMMPfam_UPF0027,superfamily_Hypothetical protein PH1602 FBXO7 25793 genome.wustl.edu 37 22 32889158 32889158 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012179.3 +1 reviewed p.R345Q 1.000 563 0.2% 468 32.1% 62 61.2% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383 APOL5 80831 genome.wustl.edu 37 22 36122398 36122398 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_030642.1 +1 reviewed p.L95 0.007 176 0% 117 23.9% 0 - - - - HMMPfam_ApoL RBFOX2 23543 genome.wustl.edu 37 22 36164307 36164307 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001082578.1 -1 reviewed p.I251 1.000 146 0% 166 16.3% 38 5.2% - - - HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928 APOL1 8542 genome.wustl.edu 37 22 36650017 36650017 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_145343.2 +1 reviewed p.F3L 0.001 187 0% 136 22.1% 6 16.6% unknown(0) deleterious(0) - NULL TST 7263 genome.wustl.edu 37 22 37407254 37407254 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003312.4 -1 reviewed p.K236N 1.000 31 0% 24 33.3% 106 47.1% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase CYTH4 27128 genome.wustl.edu 37 22 37707050 37707050 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013385.3 +1 reviewed p.K277R 1.000 85 0% 45 37.8% 29 0% possibly_damaging(0.762) tolerated(0.08) deleterious(0.583) HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729 CYTH4 27128 genome.wustl.edu 37 22 37707081 37707081 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000446506 +1 known p.P40S 1.000 83 0% 55 20% 25 0% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ENSG00000184949 0 genome.wustl.edu 37 22 39016233 39016233 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000355830 -1 known p.K335T 0.000 110 0% 121 19.8% 0 - possibly_damaging(0.85) tolerated(0.32) neutral(0.351) NULL SLC25A17 10478 genome.wustl.edu 37 22 41188625 41188625 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006358.2 -1 validated p.F80V 1.000 121 0% 133 30.1% 9 33.3% unknown(0) - - superfamily_Mitochondrial carrier,HMMPfam_Mito_carr EP300 2033 genome.wustl.edu 37 22 41562649 41562649 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001429.3 +1 reviewed p.E1285* 1.000 211 0% 266 22.6% 3 0% - - - HMMPfam_DUF906 L3MBTL2 83746 genome.wustl.edu 37 22 41613144 41613144 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031488.4 +1 validated p.D180N 1.000 92 0% 69 11.6% 29 13.7% probably_damaging(0.981) deleterious(0.02) deleterious(0.808) HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT PACSIN2 11252 genome.wustl.edu 37 22 43284692 43284692 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007229.3 -1 reviewed p.K189T 1.000 588 0.3% 483 19.7% 22 59% possibly_damaging(0.855) deleterious(0) deleterious(0.774) NULL SCUBE1 80274 genome.wustl.edu 37 22 43606959 43606959 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173050.2 -1 validated p.F784 0.995 392 0.3% 283 32.5% 5 60% - - - HMMPfam_GCC2_GCC3 PNPLA5 150379 genome.wustl.edu 37 22 44282301 44282301 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138814.3 -1 reviewed p.N277K 0.000 158 0% 101 15.8% 0 - benign(0.073) tolerated(0.82) neutral(0.005) NULL SMC1B 27127 genome.wustl.edu 37 22 45789573 45789573 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_148674.3 -1 validated p.R496C 0.997 266 0% 262 13.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540 RIBC2 26150 genome.wustl.edu 37 22 45828232 45828232 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015653.3 +1 validated p.G307E 0.000 147 0.7% 141 21.3% 7 42.8% benign(0.014) tolerated(0.25) neutral(0.037) HMMPfam_RIB43A IL17REL 400935 genome.wustl.edu 37 22 50436632 50436632 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001694.2 -1 validated p.C236 0.955 13 0% 17 23.5% 0 - - - - NULL TUBGCP6 85378 genome.wustl.edu 37 22 50671900 50671900 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020461.3 -1 reviewed p.D321N 1.000 28 0% 15 26.7% 7 0% probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL FAM116B 414918 genome.wustl.edu 37 22 50752254 50752254 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001794.3 -1 validated p.R398W 0.902 63 0% 54 16.7% 29 31% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1630 IL3RA 3563 genome.wustl.edu 37 X 1471285 1471285 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002183.2 +1 reviewed p.D168N 0.002 361 0% 265 27.2% 4 0% possibly_damaging(0.714) tolerated(0.44) neutral(0.271) superfamily_FN_III-like ZBED1 9189 genome.wustl.edu 37 X 2408667 2408667 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004729.3 -1 reviewed p.D32N 1.000 279 0% 210 27.1% 27 33.3% probably_damaging(0.982) tolerated(0.6) neutral(0.431) HMMPfam_zf-BED,HMMSmart_ZnF_BED ARSF 416 genome.wustl.edu 37 X 3007607 3007607 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004042.3 +1 reviewed p.D301N 0.000 503 0% 396 28.3% 0 - benign(0) tolerated(0.47) neutral(0.011) HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like MXRA5 25878 genome.wustl.edu 37 X 3227897 3227897 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015419.3 -1 reviewed p.L2783M 0.019 175 0% 135 28.1% 44 0% benign(0.253) tolerated(0.11) neutral(0.298) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin MXRA5 25878 genome.wustl.edu 37 X 3240192 3240192 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015419.3 -1 reviewed p.E1178D 0.000 395 0% 355 17.7% 0 - benign(0.004) tolerated(0.41) neutral(0.015) NULL MXRA5 25878 genome.wustl.edu 37 X 3248073 3248073 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015419.3 -1 reviewed p.D232G 0.961 161 0% 168 34.5% 1 0% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) HMMSmart_SM00082,superfamily_L domain-like KAL1 3730 genome.wustl.edu 37 X 8555892 8555892 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000216.2 -1 reviewed p.W223C 1.000 219 0% 164 37.8% 3 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like SHROOM2 357 genome.wustl.edu 37 X 9900610 9900610 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001649.2 +1 reviewed p.T1096M 0.000 40 0% 23 17.4% 18 44.4% possibly_damaging(0.812) deleterious(0.02) deleterious(0.689) NULL SHROOM2 357 genome.wustl.edu 37 X 9912735 9912735 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001649.2 +1 reviewed p.E1456K 1.000 38 0% 43 18.6% 9 0% probably_damaging(0.961) tolerated(0.14) deleterious(0.653) HMMPfam_ASD2 ARHGAP6 395 genome.wustl.edu 37 X 11160390 11160390 + Silent SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_013427.2 -1 reviewed p.S740 1.000 363 0% 383 20.6% 0 - - - - NULL MSL3 10943 genome.wustl.edu 37 X 11793126 11793126 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_078629.2 +1 reviewed p.F498L 1.000 138 0% 134 11.2% 1 100% possibly_damaging(0.882) tolerated(0.07) deleterious(0.663) HMMPfam_MRG TLR7 51284 genome.wustl.edu 37 X 12904183 12904183 + Nonsense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016562.3 +1 reviewed p.R186* 0.999 65 0% 53 22.6% 0 - - - - superfamily_L domain-like EGFL6 25975 genome.wustl.edu 37 X 13607702 13607702 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015507.3 +1 reviewed p.S34 0.000 166 0% 171 31.6% 1 0% - - - NULL EGFL6 25975 genome.wustl.edu 37 X 13635864 13635864 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015507.3 +1 reviewed p.S265Y 1.000 184 0% 174 17.8% 4 0% possibly_damaging(0.948) tolerated(0.27) neutral(0.424) NULL GPM6B 2824 genome.wustl.edu 37 X 13795481 13795481 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001001995.1 -1 reviewed p.N254T 1.000 559 0% 462 19.5% 44 2.2% possibly_damaging(0.715) tolerated(0.24) neutral(0.296) HMMPfam_Myelin_PLP,HMMSmart_PLP,PatternScan_MYELIN_PLP_2 FANCB 2187 genome.wustl.edu 37 X 14882686 14882686 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001018113.1 -1 reviewed p.F316S 0.995 105 0% 95 15.8% 0 - probably_damaging(0.962) deleterious(0) deleterious(0.850) NULL FANCB 2187 genome.wustl.edu 37 X 14882986 14882986 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001018113.1 -1 reviewed p.S216Y 0.116 121 0% 115 24.3% 0 - possibly_damaging(0.528) deleterious(0.02) deleterious(0.561) NULL PIGA 5277 genome.wustl.edu 37 X 15349824 15349824 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_002641.2 -1 reviewed p.R77* 1.000 217 0% 173 19.7% 3 0% - - - HMMPfam_PIGA,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase TMEM27 57393 genome.wustl.edu 37 X 15657849 15657849 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020665.4 -1 reviewed p.F116L 0.821 307 0% 281 29.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL TXLNG 55787 genome.wustl.edu 37 X 16836784 16836784 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018360.2 +1 reviewed p.L64I 0.996 367 0.3% 303 19.5% 4 0% possibly_damaging(0.766) tolerated(0.32) neutral(0.308) NULL REPS2 9185 genome.wustl.edu 37 X 17070552 17070552 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004726.2 +1 reviewed p.E319* 1.000 272 0% 246 15.9% 1 0% - - - HMMSmart_SM00027,superfamily_EF-hand NHS 4810 genome.wustl.edu 37 X 17742544 17742544 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198270.2 +1 reviewed p.E391* 1.000 207 0% 217 24.4% 0 - - - - NULL NHS 4810 genome.wustl.edu 37 X 17743608 17743608 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198270.2 +1 reviewed p.R440K 1.000 159 0% 121 34.7% 0 - possibly_damaging(0.797) tolerated(0.11) deleterious(0.571) NULL BEND2 139105 genome.wustl.edu 37 X 18219964 18219964 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153346.4 -1 validated p.S335Y 0.001 394 0% 388 31.7% 0 - possibly_damaging(0.449) deleterious(0) deleterious(0.592) NULL CDKL5 6792 genome.wustl.edu 37 X 18593493 18593493 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001037343.1 +1 reviewed p.E55 1.000 231 0% 212 18.4% 0 - - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase GPR64 10149 genome.wustl.edu 37 X 19031841 19031841 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001079858.2 -1 validated p.A354 0.000 249 0% 207 34.3% 9 0% - - - NULL MAP3K15 389840 genome.wustl.edu 37 X 19431503 19431503 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000338883 -1 known p.S557Y 1.000 464 0.2% 440 24.3% 0 - possibly_damaging(0.768) deleterious(0.05) deleterious(0.630) NULL MAP3K15 389840 genome.wustl.edu 37 X 19433338 19433338 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000338883 -1 known p.R493W 1.000 115 0% 141 26.2% 0 - probably_damaging(0.993) deleterious(0.02) deleterious(0.833) NULL PHEX 5251 genome.wustl.edu 37 X 22117235 22117235 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000444.4 +1 reviewed p.D349Y 1.000 151 0% 156 21.8% 0 - probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_Peptidase_M13_N,superfamily_SSF55486 PTCHD1 139411 genome.wustl.edu 37 X 23411060 23411060 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173495.2 +1 validated p.A475 0.803 107 0% 90 25.6% 0 - - - - HMMPfam_Patched POLA1 5422 genome.wustl.edu 37 X 24761362 24761362 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016937.3 +1 reviewed p.E822* 1.000 270 0% 319 28.8% 3 0% - - - HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672 DCAF8L2 347442 genome.wustl.edu 37 X 27765579 27765579 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136533.1 +1 provisional p.V189 0.007 76 0% 37 43.2% 0 - - - - superfamily_WD40 repeat-like DCAF8L2 347442 genome.wustl.edu 37 X 27766293 27766293 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136533.1 +1 provisional p.C427 0.032 312 0.3% 260 34.2% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like DCAF8L2 347442 genome.wustl.edu 37 X 27766443 27766443 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001136533.1 +1 provisional p.F477L 1.000 168 0% 122 26.2% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like NR0B1 190 genome.wustl.edu 37 X 30322856 30322856 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000475.4 -1 reviewed p.T418M 0.878 357 0% 308 26.9% 0 - benign(0.079) tolerated(0.29) neutral(0.035) HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain DMD 1756 genome.wustl.edu 37 X 32360240 32360240 + Nonsense_Mutation SNP G G A rs128626249 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004006.2 -1 reviewed p.R1967* 1.000 101 0% 96 11.5% 0 - - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat DMD 1756 genome.wustl.edu 37 X 32509457 32509457 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004006.2 -1 reviewed p.L853 1.000 238 0% 224 27.7% 0 - - - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat CXorf22 170063 genome.wustl.edu 37 X 35969315 35969315 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152632.3 +1 validated p.E242* 0.647 274 0% 240 21.2% 0 - - - - NULL XK 7504 genome.wustl.edu 37 X 37545376 37545376 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021083.2 +1 reviewed p.T54 1.000 27 0% 20 25% 21 100% - - - HMMPfam_XK-related CYBB 1536 genome.wustl.edu 37 X 37641412 37641412 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000397.3 +1 reviewed p.F39 0.002 489 0% 406 30% 5 0% - - - NULL BCOR 54880 genome.wustl.edu 37 X 39922896 39922896 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001123385.1 -1 reviewed p.S1271L 0.977 296 0% 221 19.9% 15 0% benign(0.001) deleterious(0.01) neutral(0.406) NULL MED14 9282 genome.wustl.edu 37 X 40518692 40518692 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004229.3 -1 reviewed p.F1284L 1.000 414 0% 365 23.8% 2 100% possibly_damaging(0.942) deleterious(0.01) deleterious(0.792) NULL CASK 8573 genome.wustl.edu 37 X 41712457 41712457 + Missense_Mutation SNP C C T rs137852816 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003688.3 -1 reviewed p.R28Q 1.000 184 0% 157 40.8% 13 0% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase EFHC2 80258 genome.wustl.edu 37 X 44037675 44037675 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000441230 -1 known p.E610* 1.000 199 0% 169 30.2% 5 0% probably_damaging(0.983) deleterious(0.01) deleterious(0.835) superfamily_EF-hand ZNF157 7712 genome.wustl.edu 37 X 47272521 47272521 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003446.3 +1 reviewed p.R350I 1.000 131 0% 123 13% 0 - possibly_damaging(0.893) tolerated(0.09) deleterious(0.648) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 SYN1 6853 genome.wustl.edu 37 X 47464424 47464424 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006950.3 -1 reviewed p.E243K 1.000 432 0% 378 30.7% 0 - possibly_damaging(0.851) tolerated(1) neutral(0.327) HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like ZNF81 347344 genome.wustl.edu 37 X 47775351 47775351 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007137.3 +1 reviewed p.H436N 1.000 115 0% 88 25% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ZNF630 57232 genome.wustl.edu 37 X 47918337 47918337 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001037735.2 -1 validated p.Q498H 0.000 174 0.6% 166 37.3% 0 - probably_damaging(0.998) tolerated(0.22) deleterious(0.516) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 SSX6 280657 genome.wustl.edu 37 X 47976431 47976431 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000304314 +1 known p.S164L 0.000 361 0.3% 298 30.9% 0 - benign(0.001) tolerated(0.36) neutral(0.020) NULL SSX3 10214 genome.wustl.edu 37 X 48213477 48213477 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021014.2 -1 reviewed p.F79L 0.001 685 0% 579 30.4% 0 - benign(0.002) tolerated(0.11) neutral(0.272) HMMSmart_KRAB SSX4 6759 genome.wustl.edu 37 X 48244872 48244872 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005636.3 +1 reviewed p.R88Q 0.000 720 0.1% 655 10.4% 0 - probably_damaging(0.963) tolerated(0.47) neutral(0.417) NULL FTSJ1 24140 genome.wustl.edu 37 X 48340102 48340102 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_012280.2 +1 reviewed p.Y218 0.974 46 0% 49 36.7% 33 87.8% - - - NULL SUV39H1 6839 genome.wustl.edu 37 X 48564709 48564709 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000453214 +1 known p.A142V 0.722 57 0% 25 24% 43 0% unknown(0) - - NULL WDR45 11152 genome.wustl.edu 37 X 48933246 48933246 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007075.3 -1 reviewed p.L229R 1.000 98 0% 70 25.7% 124 0% probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMSmart_WD40,superfamily_WD40_like CLCN5 1184 genome.wustl.edu 37 X 49851439 49851439 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127898.1 +1 reviewed p.A490V 1.000 195 0% 144 25.7% 1 0% benign(0.012) tolerated(0.08) neutral(0.300) HMMPfam_Voltage_CLC,superfamily_Clc chloride channel CLCN5 1184 genome.wustl.edu 37 X 49855153 49855153 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001127898.1 +1 reviewed p.D709Y 1.000 101 0% 107 30.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain CCNB3 85417 genome.wustl.edu 37 X 50053047 50053047 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033031.2 +1 reviewed p.M626I 0.000 102 1% 71 14.1% 0 - benign(0.014) tolerated(0.51) neutral(0.009) NULL SHROOM4 57477 genome.wustl.edu 37 X 50351124 50351124 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020717.3 -1 reviewed p.E1006 1.000 87 0% 65 33.8% 1 100% - - - NULL SHROOM4 57477 genome.wustl.edu 37 X 50351183 50351183 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020717.3 -1 reviewed p.E987K 1.000 43 0% 44 15.9% 0 - possibly_damaging(0.882) deleterious(0.01) deleterious(0.750) NULL SHROOM4 57477 genome.wustl.edu 37 X 50376745 50376745 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020717.3 -1 reviewed p.F776L 1.000 103 0% 96 34.4% 1 0% benign(0.001) deleterious(0) neutral(0.445) HMMPfam_ASD1 HSD17B10 3028 genome.wustl.edu 37 X 53459201 53459201 + Silent SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004493.2 -1 reviewed p.V117 0.668 198 0% 196 20.9% 167 0% - - - HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains HUWE1 10075 genome.wustl.edu 37 X 53560307 53560307 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031407.4 -1 reviewed p.A4363V 1.000 105 0% 83 25.3% 62 0% unknown(0) deleterious(0) - HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain HUWE1 10075 genome.wustl.edu 37 X 53569498 53569498 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000427052 -1 known p.G2828R 1.000 82 0% 82 22% 190 0% - - - NULL HUWE1 10075 genome.wustl.edu 37 X 53644087 53644087 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031407.4 -1 reviewed p.L601I 0.993 166 0.6% 168 24.4% 41 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DUF913,superfamily_ARM repeat WNK3 65267 genome.wustl.edu 37 X 54337651 54337651 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020922.4 -1 reviewed p.P204H 1.000 355 0% 341 11.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase WNK3 65267 genome.wustl.edu 37 X 54359937 54359937 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020922.4 -1 reviewed p.R57I 0.998 195 0% 217 17.5% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL GNL3L 54552 genome.wustl.edu 37 X 54585066 54585066 + Missense_Mutation SNP G G T rs58782845 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_019067.5 +1 reviewed p.K548N 1.000 54 0% 57 14% 12 0% possibly_damaging(0.898) tolerated(0.11) deleterious(0.626) NULL APEX2 27301 genome.wustl.edu 37 X 55033350 55033350 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014481.2 +1 reviewed p.E347K 0.001 43 0% 47 19.1% 42 0% benign(0) tolerated(0.9) - NULL APEX2 27301 genome.wustl.edu 37 X 55033426 55033426 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014481.2 +1 reviewed p.A372V 0.965 73 0% 76 23.7% 28 89.2% benign(0.178) tolerated(0.21) neutral(0.060) NULL FOXR2 139628 genome.wustl.edu 37 X 55650398 55650398 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_198451.3 +1 validated p.N85S 0.660 118 0% 106 23.6% 0 - probably_damaging(1) tolerated(0.16) deleterious(0.559) NULL KLF8 11279 genome.wustl.edu 37 X 56291623 56291623 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007250.4 +1 reviewed p.S31Y 0.093 79 0% 54 29.6% 1 0% possibly_damaging(0.805) deleterious(0.04) deleterious(0.652) NULL ZXDA 7789 genome.wustl.edu 37 X 57935853 57935853 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007156.4 -1 reviewed p.A334 0.000 83 0% 75 22.7% 2 0% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 ARHGEF9 23229 genome.wustl.edu 37 X 62944490 62944490 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_015185.2 -1 reviewed p.V37 1.000 134 0% 96 12.5% 4 0% - - - HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 LAS1L 81887 genome.wustl.edu 37 X 64734849 64734849 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_031206.4 -1 validated p.D644 0.945 65 0% 54 29.6% 37 0% - - - NULL VSIG4 11326 genome.wustl.edu 37 X 65244971 65244971 + Missense_Mutation SNP C C A rs17315645 byCluster;byFrequency;by1000genomes TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_007268.2 -1 reviewed p.G279V 0.017 273 0% 230 40.9% 18 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LOC100129144 100129144 genome.wustl.edu 37 X 66594426 66594426 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_001721427.1 +1 model p.E153D 1.000 63 0% 69 34.8% 0 - - - - superfamily_C2H2 and C2HC zinc fingers EFNB1 1947 genome.wustl.edu 37 X 68060194 68060194 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004429.4 +1 reviewed p.A246 0.656 102 0% 78 10.3% 24 8.3% - - - NULL NLGN3 54413 genome.wustl.edu 37 X 70389238 70389238 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018977.3 +1 reviewed p.R593Q 1.000 117 0% 100 20% 0 - probably_damaging(0.987) deleterious(0.01) deleterious(0.842) HMMPfam_COesterase,superfamily_SSF53474 TAF1 6872 genome.wustl.edu 37 X 70603870 70603870 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004606.3 +1 reviewed p.P689L 1.000 530 0% 444 25.9% 6 0% benign(0.002) tolerated(0.29) neutral(0.029) NULL MIR545 664614 genome.wustl.edu 37 X 73506998 73506998 + RNA SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000385085 -1 known NULL 1.000 91 0% 97 21.6% 0 - - - - - KIAA2022 340533 genome.wustl.edu 37 X 73962588 73962588 + Missense_Mutation SNP T T C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001008537.2 -1 validated p.I602V 0.187 391 0% 341 27% 0 - benign(0) tolerated(1) - NULL ATRX 546 genome.wustl.edu 37 X 76937748 76937748 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000489.3 -1 reviewed p.K1000N 0.732 131 0% 128 20.3% 0 - benign(0.167) tolerated(0.49) neutral(0.026) NULL ATP7A 538 genome.wustl.edu 37 X 77275827 77275827 + Missense_Mutation SNP A A G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000052.4 +1 reviewed p.T905A 1.000 147 0% 134 34.3% 5 60% possibly_damaging(0.677) deleterious(0) deleterious(0.685) HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M CYSLTR1 10800 genome.wustl.edu 37 X 77528769 77528769 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006639.2 -1 reviewed p.L159I 1.000 203 0% 161 27.3% 1 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LPAR4 2846 genome.wustl.edu 37 X 78011060 78011060 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005296.2 +1 reviewed p.R232C 0.997 206 0% 184 27.7% 0 - probably_damaging(0.999) tolerated(0.19) deleterious(0.540) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ITM2A 9452 genome.wustl.edu 37 X 78616937 78616937 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_004867.4 -1 reviewed p.D198Y 1.000 158 0% 116 33.6% 13 15.3% possibly_damaging(0.903) deleterious(0) deleterious(0.802) HMMPfam_BRICHOS TBX22 50945 genome.wustl.edu 37 X 79278694 79278694 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001109878.1 +1 reviewed p.R104I 1.000 147 0% 98 14.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_1 FAM46D 169966 genome.wustl.edu 37 X 79699097 79699097 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152630.4 +1 validated p.P353 0.992 100 0% 102 23.5% 0 - - - - NULL BRWD3 254065 genome.wustl.edu 37 X 79936867 79936867 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153252.4 -1 reviewed p.R1543W 0.947 355 0% 344 20.9% 4 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL BRWD3 254065 genome.wustl.edu 37 X 79991559 79991559 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153252.4 -1 reviewed p.R281I 1.000 142 0% 163 11% 2 0% probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40 CYLC1 1538 genome.wustl.edu 37 X 83129419 83129419 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_021118.1 +1 provisional p.S568* 0.014 130 0% 157 28% 0 - - - - NULL RPS6KA6 27330 genome.wustl.edu 37 X 83352818 83352818 + Silent SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014496.4 -1 reviewed p.I605 0.986 173 0% 190 30.5% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase POF1B 79983 genome.wustl.edu 37 X 84606374 84606374 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024921.3 -1 reviewed p.E174D 1.000 418 0% 397 19.9% 0 - possibly_damaging(0.882) deleterious(0) deleterious(0.789) NULL CPXCR1 53336 genome.wustl.edu 37 X 88009062 88009062 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_033048.5 +1 validated p.K216T 0.000 131 0% 143 33.6% 0 - probably_damaging(0.958) deleterious(0) deleterious(0.846) NULL TRMT2B 79979 genome.wustl.edu 37 X 100297105 100297105 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024917.5 -1 reviewed p.T58 0.186 234 0% 211 30.8% 3 0% - - - NULL CENPI 2491 genome.wustl.edu 37 X 100364525 100364525 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006733.2 +1 reviewed p.S143Y 1.000 414 0% 320 15% 3 0% probably_damaging(0.986) deleterious(0.05) deleterious(0.780) HMMPfam_Mis6 DRP2 1821 genome.wustl.edu 37 X 100510195 100510195 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001939.2 +1 reviewed p.N735H 1.000 348 0% 267 25.8% 0 - probably_damaging(0.981) tolerated(0.16) deleterious(0.485) NULL ARMCX2 9823 genome.wustl.edu 37 X 100911098 100911098 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014782.5 -1 reviewed p.L493I 0.998 144 0% 153 12.4% 7 0% probably_damaging(0.964) tolerated(0.14) deleterious(0.656) HMMPfam_DUF634,superfamily_ARM-type_fold GPRASP1 9737 genome.wustl.edu 37 X 101909008 101909008 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099410.1 +1 reviewed p.S56F 0.007 186 0% 143 15.4% 1 0% benign(0.144) tolerated(0.06) neutral(0.335) NULL GPRASP1 9737 genome.wustl.edu 37 X 101910527 101910527 + Silent SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099410.1 +1 reviewed p.I562 0.000 85 0% 67 25.4% 0 - - - - NULL BEX1 55859 genome.wustl.edu 37 X 102318055 102318055 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018476.3 -1 validated p.R50S 0.018 289 0% 194 19.1% 4 0% probably_damaging(0.983) tolerated(0.33) neutral(0.453) HMMPfam_BEX CXorf57 55086 genome.wustl.edu 37 X 105868404 105868404 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018015.5 +1 validated p.R291W 0.002 499 0% 418 11.5% 0 - probably_damaging(0.992) deleterious(0.01) deleterious(0.853) superfamily_Nucleic acid-binding proteins CXorf57 55086 genome.wustl.edu 37 X 105905390 105905390 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018015.5 +1 validated p.R708 0.988 209 0% 168 18.5% 0 - - - - NULL MORC4 79710 genome.wustl.edu 37 X 106224708 106224708 + Splice_Site SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_024657.4 -1 reviewed e6-1 1.000 174 0% 179 22.3% 1 0% - - - - VSIG1 340547 genome.wustl.edu 37 X 107301375 107301375 + Nonsense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_182607.4 +1 reviewed p.E53* 0.000 353 0% 336 25.9% 0 - - - - HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726 GUCY2F 2986 genome.wustl.edu 37 X 108647605 108647605 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001522.2 -1 reviewed p.D693N 1.000 279 0.7% 218 21.1% 0 - benign(0) tolerated(0.19) neutral(0.050) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) GUCY2F 2986 genome.wustl.edu 37 X 108708671 108708671 + Silent SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001522.2 -1 reviewed p.I244 1.000 100 0% 87 24.1% 0 - - - - HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I ACSL4 2182 genome.wustl.edu 37 X 108924310 108924310 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_022977.2 -1 reviewed p.A232V 0.069 392 0% 363 22.6% 14 0% benign(0.001) tolerated(0.15) neutral(0.241) HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like CHRDL1 91851 genome.wustl.edu 37 X 109924716 109924716 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143981.1 -1 reviewed p.R384* 0.995 223 0% 198 19.2% 0 - - - - NULL CHRDL1 91851 genome.wustl.edu 37 X 109963074 109963074 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001143981.1 -1 reviewed p.R177Q 0.998 114 0% 101 12.9% 0 - benign(0.332) tolerated(0.37) neutral(0.123) HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1 AMOT 154796 genome.wustl.edu 37 X 112054591 112054591 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001113490.1 -1 reviewed p.A475T 1.000 313 0% 266 20.3% 6 0% possibly_damaging(0.792) deleterious(0.01) deleterious(0.703) NULL LRCH2 57631 genome.wustl.edu 37 X 114357737 114357737 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_020871.3 -1 validated p.R623H 1.000 426 0% 422 10.9% 2 0% benign(0.304) deleterious(0.01) deleterious(0.500) NULL UPF3B 65109 genome.wustl.edu 37 X 118975093 118975093 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_080632.1 -1 reviewed p.K251N 1.000 915 0.1% 864 20.8% 1 0% unknown(0) deleterious(0.03) - NULL CUL4B 8450 genome.wustl.edu 37 X 119677988 119677988 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003588.3 -1 reviewed p.K403T 1.000 257 0% 274 31.4% 2 100% benign(0) tolerated(0.16) neutral(0.059) HMMPfam_Cullin,superfamily_Cullin repeat C1GALT1C1 29071 genome.wustl.edu 37 X 119760607 119760607 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001011551.2 -1 reviewed p.W139G 1.000 64 0% 65 23.1% 8 12.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GRIA3 2892 genome.wustl.edu 37 X 122536945 122536945 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000264357 +1 known p.R394Q 1.000 211 0.5% 186 10.8% 0 - probably_damaging(0.986) tolerated(0.41) neutral(0.450) superfamily_Periplasmic binding protein-like I STAG2 10735 genome.wustl.edu 37 X 123189994 123189994 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042749.1 +1 validated p.L405I 1.000 200 0% 188 22.9% 4 100% probably_damaging(0.989) deleterious(0) deleterious(0.884) superfamily_ARM-type_fold STAG2 10735 genome.wustl.edu 37 X 123210230 123210230 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001042749.1 +1 validated p.R861K 1.000 166 0% 197 23.9% 9 0% benign(0.255) tolerated(0.13) neutral(0.279) superfamily_ARM-type_fold SMARCA1 6594 genome.wustl.edu 37 X 128652422 128652422 + Missense_Mutation SNP T T G novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_003069.3 -1 reviewed p.K59N 1.000 204 0% 233 21.5% 8 100% unknown(0) tolerated(0.13) - superfamily_P-loop containing nucleoside triphosphate hydrolases UTP14A 10813 genome.wustl.edu 37 X 129059969 129059969 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_006649.3 +1 reviewed p.F608L 1.000 346 0% 335 10.7% 10 20% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Utp14 TFDP3 51270 genome.wustl.edu 37 X 132351105 132351105 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_016521.2 -1 reviewed p.D395N 0.994 72 1.4% 43 37.2% 0 - unknown(0) deleterious(0) - NULL CCDC160 347475 genome.wustl.edu 37 X 133379094 133379094 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001101357.1 +1 provisional p.K88N 0.018 64 0% 57 35.1% 0 - benign(0.052) tolerated(0.31) neutral(0.030) NULL LOC728470 728470 genome.wustl.edu 37 X 134326970 134326970 + Silent SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 XM_002343844.1 -1 model p.F46 0.018 197 0% 123 25.2% 0 - - - - NULL ZNF449 203523 genome.wustl.edu 37 X 134494166 134494166 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_152695.5 +1 reviewed p.K241T 0.053 19 0% 24 25% 0 - probably_damaging(0.98) tolerated(0.66) neutral(0.426) NULL SAGE1 55511 genome.wustl.edu 37 X 134991806 134991806 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018666.2 +1 reviewed p.V531I 0.000 197 0% 198 17.2% 0 - benign(0.23) tolerated(0.77) neutral(0.024) NULL SAGE1 55511 genome.wustl.edu 37 X 134992290 134992290 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_018666.2 +1 reviewed p.A609S 0.005 231 0% 202 27.7% 0 - benign(0.183) tolerated(0.73) neutral(0.019) NULL GPR112 139378 genome.wustl.edu 37 X 135487991 135487991 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_153834.3 +1 reviewed p.R2932Q 0.000 336 0% 284 34.9% 0 - possibly_damaging(0.949) deleterious(0.03) deleterious(0.758) HMMPfam_7tm_2 HTATSF1 27336 genome.wustl.edu 37 X 135593666 135593666 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_014500.4 +1 reviewed p.L588I 0.000 68 0% 72 23.6% 2 0% possibly_damaging(0.832) tolerated(0.38) neutral(0.335) NULL FGF13 2258 genome.wustl.edu 37 X 137717639 137717639 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001139500.1 -1 reviewed p.F204V 1.000 401 0% 339 23.6% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like F9 2158 genome.wustl.edu 37 X 138643011 138643011 + Missense_Mutation SNP G G A rs137852247 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000133.3 +1 reviewed p.A279T 0.988 507 0% 390 33.6% 0 - probably_damaging(0.974) deleterious(0.02) deleterious(0.799) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases MCF2 4168 genome.wustl.edu 37 X 138698524 138698524 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001099855.1 -1 reviewed p.L430I 1.000 54 0% 60 46.7% 0 - probably_damaging(0.992) tolerated(0.11) deleterious(0.719) NULL ATP11C 286410 genome.wustl.edu 37 X 138869378 138869378 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173694.4 -1 validated p.R519* 0.023 290 0% 257 27.2% 0 - - - - superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N ATP11C 286410 genome.wustl.edu 37 X 138882267 138882267 + Missense_Mutation SNP A A C novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173694.4 -1 validated p.F224C 1.000 213 0% 227 31.7% 4 0% probably_damaging(0.986) deleterious(0) deleterious(0.879) superfamily_Calcium ATPase transduction domain A ATP11C 286410 genome.wustl.edu 37 X 138901537 138901537 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_173694.4 -1 validated p.R69I 1.000 68 0% 92 23.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MAGEC3 139081 genome.wustl.edu 37 X 140983095 140983095 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138702.1 +1 reviewed p.R317Q 0.003 96 0% 90 17.8% 0 - unknown(0) - - NULL MAGEC3 139081 genome.wustl.edu 37 X 140985099 140985099 + Missense_Mutation SNP G G A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_138702.1 +1 reviewed p.D519N 0.000 174 0% 144 21.5% 0 - possibly_damaging(0.495) tolerated(0.55) neutral(0.172) HMMPfam_MAGE MAGEC1 9947 genome.wustl.edu 37 X 140994515 140994515 + Missense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005462.4 +1 reviewed p.P442H 0.290 292 0% 333 17.7% 0 - unknown(0) deleterious(0) - NULL SLITRK2 84631 genome.wustl.edu 37 X 144904043 144904043 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001144003.2 +1 reviewed p.L34 0.993 141 0% 140 20% 0 - - - - HMMSmart_SM00013,superfamily_L domain-like MAGEA11 4110 genome.wustl.edu 37 X 148797493 148797493 + Missense_Mutation SNP G G T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005366.4 +1 reviewed p.R116I 0.001 69 0% 63 33.3% 0 - probably_damaging(0.997) deleterious(0) deleterious(0.911) NULL MTM1 4534 genome.wustl.edu 37 X 149828909 149828909 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000252.2 +1 reviewed p.C473 1.000 474 0% 444 19.4% 0 - - - - superfamily_SSF52799 MAGEA10 4109 genome.wustl.edu 37 X 151303631 151303631 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001011543.1 -1 reviewed p.P154 0.000 137 0% 134 31.3% 0 - - - - HMMPfam_MAGE ABCD1 215 genome.wustl.edu 37 X 153001625 153001625 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000033.3 +1 reviewed p.R381C 0.999 117 0% 79 45.6% 16 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PLXNB3 5365 genome.wustl.edu 37 X 153043105 153043105 + Silent SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000448847 +1 known p.S45L 0.816 117 0% 73 31.5% 21 90.4% - - - superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl IDH3G 3421 genome.wustl.edu 37 X 153051378 153051378 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 ENST00000454076 -1 known p.G195* 1.000 56 0% 41 22% 446 0% benign(0.003) tolerated(0.09) neutral(0.296) HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like HCFC1 3054 genome.wustl.edu 37 X 153230037 153230037 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_005334.2 -1 reviewed p.E112K 1.000 236 0% 193 26.4% 18 0% probably_damaging(0.99) deleterious(0.02) deleterious(0.825) superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2 FLNA 2316 genome.wustl.edu 37 X 153581420 153581420 + Missense_Mutation SNP C C T novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_001110556.1 -1 reviewed p.E2059K 0.999 70 0% 58 41.4% 254 0% probably_damaging(0.959) tolerated(0.05) deleterious(0.748) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin F8 2157 genome.wustl.edu 37 X 154158413 154158413 + Nonsense_Mutation SNP C C A novel TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000132.3 -1 reviewed p.E1218* 0.022 55 0% 67 17.9% 0 - - - - NULL F8 2157 genome.wustl.edu 37 X 154194801 154194801 + Missense_Mutation SNP G G A rs137852364 TCGA-D1-A16X-01A-11D-A12J-09 TCGA-D1-A16X-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6af81d4a-62fd-4106-8065-633e7c82e878 9fc02cd7-699e-41cd-9d83-448799463333 NM_000132.3 -1 reviewed p.R391C 0.995 264 0% 215 14% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL