Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain MRPL20 55052 genome.wustl.edu 37 1 1341189 1341189 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017971.3 -1 reviewed p.K92N 1.000 188 0% 192 37% 150 40.6% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Ribosomal_L20,superfamily_Ribosomal protein L20 KIAA1751 85452 genome.wustl.edu 37 1 1887100 1887100 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080484.1 -1 predicted p.W736R 0.013 34 0% 38 36.8% 0 - unknown(0) - - NULL LOC100287750 100287750 genome.wustl.edu 37 1 2116748 2116748 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002342013.1 -1 model p.P138L 0.905 113 0% 108 42.6% 57 50.8% unknown(0) - - NULL WRAP73 49856 genome.wustl.edu 37 1 3550008 3550008 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017818.3 -1 reviewed p.P292 0.000 17 0% 17 35.3% 5 40% - - - superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase CEP104 9731 genome.wustl.edu 37 1 3754048 3754048 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014704.3 -1 validated p.L309 0.000 188 0% 235 37% 2 0% - - - NULL NPHP4 261734 genome.wustl.edu 37 1 5934651 5934651 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015102.2 -1 reviewed p.E1037D 1.000 24 0% 19 26.3% 18 22.2% probably_damaging(1) tolerated(0.09) deleterious(0.796) NULL RPL22 6146 ucsc.edu 37 1 6257785 6257785 + Frame_Shift_Del DEL T - - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000983.3 -1 reviewed p.K15fs 1 - - - - - - - - - HMMPfam_Ribosomal_L22e DNAJC11 55735 genome.wustl.edu 37 1 6741067 6741067 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018198.3 -1 validated p.R35W 1.000 263 0% 260 11.2% 13 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain PADI4 23569 genome.wustl.edu 37 1 17668535 17668535 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012387.2 +1 reviewed p.Y250 0.930 60 0% 86 24.4% 0 - - - - HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain UBR4 23352 genome.wustl.edu 37 1 19491462 19491462 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020765.2 -1 validated p.H1448Y 1.000 79 0% 74 23% 2 0% benign(0) tolerated(0.55) neutral(0.007) superfamily_ARM repeat AKR7L 246181 genome.wustl.edu 37 1 19593888 19593888 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_201252.3 -1 reviewed p.A301V 0.809 93 0% 103 32% 1 0% probably_damaging(0.981) tolerated(0.51) neutral(0.434) superfamily_NAD(P)-linked oxidoreductase BAI2 576 genome.wustl.edu 37 1 32193808 32193808 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001703.2 -1 reviewed p.R1497H 1.000 73 0% 90 35.6% 5 20% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ZNF362 149076 genome.wustl.edu 37 1 33742029 33742029 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152493.2 +1 validated p.T61 0.913 12 0% 11 45.5% 13 53.8% - - - NULL ZNF362 149076 genome.wustl.edu 37 1 33745788 33745788 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152493.2 +1 validated p.T138M 0.994 24 0% 24 29.2% 17 17.6% unknown(0) tolerated(0.1) - NULL CSMD2 114784 genome.wustl.edu 37 1 34037277 34037277 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_052896.3 -1 validated p.W2606* 1.000 70 0% 85 28.2% 1 0% - - - HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain TEKT2 27285 genome.wustl.edu 37 1 36552585 36552585 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014466.2 +1 reviewed p.A229V 0.987 57 0% 73 32.9% 26 42.3% probably_damaging(0.987) deleterious(0.01) deleterious(0.842) HMMPfam_Tektin MACF1 23499 genome.wustl.edu 37 1 39827293 39827293 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000372925 +1 known p.A1310V 1.000 124 0% 116 25.9% 1 100% - - - HMMSmart_SM00150 EDN2 1907 genome.wustl.edu 37 1 41945142 41945142 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001956.3 -1 reviewed p.K159E 0.000 201 0% 210 25.2% 0 - benign(0.026) deleterious(0.02) neutral(0.384) NULL HIVEP3 59269 genome.wustl.edu 37 1 41978648 41978648 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024503.3 -1 validated p.R2082W 0.945 22 0% 19 21.1% 1 0% possibly_damaging(0.864) deleterious(0) deleterious(0.779) NULL HIVEP3 59269 genome.wustl.edu 37 1 42049300 42049300 + Missense_Mutation SNP T T G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024503.3 -1 validated p.E390A 1.000 151 0% 176 32.4% 1 0% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL DMAP1 55929 genome.wustl.edu 37 1 44685960 44685960 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001034023.1 +1 reviewed p.G441 0.663 28 0% 29 27.6% 92 47.8% - - - NULL HECTD3 79654 genome.wustl.edu 37 1 45472677 45472677 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024602.5 -1 validated p.R523C 1.000 75 0% 74 31.1% 13 30.7% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain TESK2 10420 genome.wustl.edu 37 1 45811096 45811096 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007170.2 -1 reviewed p.R378C 0.923 58 0% 57 35.1% 6 33.3% possibly_damaging(0.783) deleterious(0) deleterious(0.738) NULL GPBP1L1 60313 genome.wustl.edu 37 1 46120912 46120912 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021639.4 -1 validated p.H47R 1.000 198 0% 182 33.5% 25 48% benign(0.005) deleterious(0) neutral(0.445) NULL ORC1 4998 genome.wustl.edu 37 1 52851603 52851603 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004153.2 -1 reviewed p.R468C 0.310 77 0% 67 32.8% 3 66.6% benign(0.006) deleterious(0.03) neutral(0.364) NULL TTC4 7268 genome.wustl.edu 37 1 55197295 55197295 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004623.3 +1 validated p.R273M 0.982 138 0.7% 170 35.9% 25 36% possibly_damaging(0.824) tolerated(0.11) deleterious(0.584) NULL EFCAB7 84455 genome.wustl.edu 37 1 63991310 63991310 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032437.2 +1 validated p.R23* 0.996 133 0% 150 26.7% 2 50% - - - NULL AK4 205 genome.wustl.edu 37 1 65690488 65690488 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001005353.1 +1 reviewed p.P164 0.073 296 0% 319 31% 0 - - - - HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases LRRC7 57554 genome.wustl.edu 37 1 70225911 70225911 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020794.2 +1 validated p.I8 0.992 70 0% 68 29.4% 0 - - - - superfamily_L domain-like LPHN2 23266 genome.wustl.edu 37 1 82408841 82408841 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012302.2 +1 reviewed p.R196C 1.000 274 0% 280 35.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_OLF,HMMSmart_SM00284 LPHN2 23266 genome.wustl.edu 37 1 82456092 82456092 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012302.2 +1 reviewed p.A1159T 1.000 87 0% 122 10.7% 4 0% benign(0.001) tolerated(0.22) neutral(0.042) HMMPfam_Latrophilin RBMXL1 494115 genome.wustl.edu 37 1 89448559 89448559 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000321792 -1 known p.R317 1.000 193 1% 179 35.2% 13 7.6% - - - NULL MTF2 22823 genome.wustl.edu 37 1 93594884 93594884 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007358.3 +1 validated p.R347* 1.000 219 0% 269 27.9% 0 - - - - NULL AMY2B 280 genome.wustl.edu 37 1 104114328 104114328 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020978.3 +1 reviewed p.R35Q 1.000 1126 0% 1156 31.3% 3 33.3% possibly_damaging(0.92) deleterious(0.01) deleterious(0.776) HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases AMPD2 271 genome.wustl.edu 37 1 110169887 110169887 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004037.6 +1 validated p.R324H 1.000 106 0% 131 30.5% 8 0% possibly_damaging(0.509) tolerated(0.1) neutral(0.457) NULL EPS8L3 79574 genome.wustl.edu 37 1 110294355 110294355 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_139053.1 -1 reviewed p.R496Q 0.000 62 0% 54 25.9% 0 - benign(0) tolerated(1) - HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3 AP4B1 10717 genome.wustl.edu 37 1 114445435 114445435 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006594.2 -1 validated p.K55E 1.000 125 0% 156 28.8% 10 50% probably_damaging(0.979) deleterious(0.03) deleterious(0.786) HMMPfam_Adaptin_N,superfamily_ARM-type_fold CD101 9398 genome.wustl.edu 37 1 117576632 117576632 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004258.3 +1 validated p.R992Q 0.000 437 0% 473 30.4% 5 60% benign(0.003) tolerated(0.46) neutral(0.012) NULL PEX11B 8799 genome.wustl.edu 37 1 145522548 145522548 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003846.2 +1 validated p.R137C 1.000 184 0% 191 29.3% 18 38.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PEX11 FMO5 2330 genome.wustl.edu 37 1 146656151 146656151 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001144829.1 -1 reviewed p.D439N 0.002 425 0% 444 30.6% 2 50% benign(0.282) deleterious(0.01) deleterious(0.492) HMMPfam_FMO-like OTUD7B 56957 genome.wustl.edu 37 1 149916336 149916336 + Missense_Mutation SNP T T G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020205.2 -1 validated p.K651T 1.000 94 0% 98 26.5% 9 0% possibly_damaging(0.786) tolerated(0.08) deleterious(0.595) NULL TARS2 80222 genome.wustl.edu 37 1 150479465 150479465 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_025150.3 +1 provisional p.W694C 0.017 159 0% 171 31.6% 34 50% benign(0.024) tolerated(0.18) neutral(0.057) HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd HORMAD1 84072 genome.wustl.edu 37 1 150684044 150684044 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032132.3 -1 provisional p.Y102H 0.991 291 0% 311 28.9% 0 - probably_damaging(0.969) tolerated(0.07) deleterious(0.730) HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2 ZNF687 57592 genome.wustl.edu 37 1 151259295 151259295 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020832.1 +1 provisional p.P176 0.914 49 0% 47 46.8% 15 40% - - - NULL FLG 2312 genome.wustl.edu 37 1 152280133 152280133 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002016.1 -1 reviewed p.R2410H 0.000 225 0% 270 32.2% 0 - unknown(0) tolerated(0.13) - NULL CRTC2 200186 genome.wustl.edu 37 1 153923811 153923811 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_181715.1 -1 provisional p.D443 0.996 43 0% 50 10% 46 13% - - - NULL IQGAP3 128239 genome.wustl.edu 37 1 156498818 156498818 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_178229.4 -1 validated p.L1487 0.008 139 0% 188 30.9% 11 72.7% - - - HMMPfam_RasGAP_C BCAN 63827 genome.wustl.edu 37 1 156627946 156627946 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021948.3 +1 validated p.P774S 1.000 94 0% 111 36% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like INSRR 3645 genome.wustl.edu 37 1 156823662 156823662 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014215.1 -1 validated p.G173 0.000 59 0% 68 38.2% 0 - - - - HMMPfam_Furin-like,superfamily_SSF52058 OR6P1 128366 genome.wustl.edu 37 1 158533282 158533282 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000334632 -1 known p.T38I 0.124 93 0% 101 28.7% 0 - possibly_damaging(0.883) deleterious(0.04) deleterious(0.694) superfamily_SSF81321 SPTA1 6708 genome.wustl.edu 37 1 158641913 158641913 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003126.2 -1 reviewed p.C475Y 1.000 192 0% 209 10.5% 0 - possibly_damaging(0.932) deleterious(0) deleterious(0.823) NULL LY9 4063 genome.wustl.edu 37 1 160769604 160769604 + Silent SNP C C T rs139694843 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002348.2 +1 validated p.S62 0.000 93 0% 85 36.5% 1 0% - - - HMMSmart_SM00409,superfamily_Immunoglobulin NIT1 4817 genome.wustl.edu 37 1 161088991 161088991 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005600.1 +1 provisional p.S56P 1.000 76 0% 83 36.1% 50 28% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase HSPA6 3310 genome.wustl.edu 37 1 161495899 161495899 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002155.3 +1 validated p.A484V 1.000 153 0% 155 32.9% 2 0% possibly_damaging(0.945) deleterious(0) deleterious(0.834) HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain C1orf114 57821 genome.wustl.edu 37 1 169366494 169366494 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021179.1 -1 predicted p.R450W 0.994 344 0% 376 32.2% 0 - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL FMO1 2326 genome.wustl.edu 37 1 171244495 171244495 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002021.1 +1 reviewed p.C111Y 0.999 101 0% 132 31.1% 0 - benign(0.001) tolerated(1) - HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain C1orf49 84066 genome.wustl.edu 37 1 178485770 178485770 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032126.4 +1 validated p.K79N 1.000 218 0% 259 35.9% 0 - - - - NULL ABL2 27 genome.wustl.edu 37 1 179077240 179077240 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007314.3 -1 reviewed p.S1054 0.747 104 0% 105 35.2% 6 0% - - - HMMPfam_F_actin_bind CACNA1E 777 genome.wustl.edu 37 1 181689946 181689946 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000721.2 +1 reviewed p.S637 0.007 198 0% 209 29.2% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels LHX9 56956 genome.wustl.edu 37 1 197889272 197889272 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020204.2 +1 reviewed p.D115 1.000 61 0% 59 49.2% 0 - - - - HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain) PPFIA4 8497 genome.wustl.edu 37 1 203028921 203028921 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015053.1 +1 validated p.R336H 1.000 113 0% 115 25.2% 1 0% probably_damaging(1) tolerated(0.06) deleterious(0.823) superfamily_SAM/Pointed domain PLEKHA6 22874 genome.wustl.edu 37 1 204192622 204192622 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014935.2 -1 validated p.D1041 1.000 51 0% 76 26.3% 4 25% - - - NULL CTSE 1510 genome.wustl.edu 37 1 206317646 206317646 + Splice_Site SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001910.2 +1 reviewed e1+2 1.000 138 0% 140 30.7% 0 - - - - - DYRK3 8444 genome.wustl.edu 37 1 206821585 206821585 + Missense_Mutation SNP C C T rs35968381 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003582.2 +1 reviewed p.R348C 0.947 91 0% 103 37.9% 1 0% possibly_damaging(0.449) deleterious(0) deleterious(0.592) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase PLXNA2 5362 genome.wustl.edu 37 1 208206717 208206717 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_025179.3 -1 reviewed p.R1668W 1.000 91 0% 106 29.2% 17 29.4% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl ANGEL2 90806 genome.wustl.edu 37 1 213168440 213168440 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144567.3 -1 validated p.N526 1.000 282 0% 252 26.2% 1 100% - - - HMMPfam_Exo_endo_phos,superfamily_DNase I-like USH2A 7399 genome.wustl.edu 37 1 215972457 215972457 + Nonsense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_206933.2 -1 reviewed p.C3250* 1.000 79 0% 123 44.7% 0 - - - - HMMSmart_SM00060,superfamily_Fibronectin type III USH2A 7399 genome.wustl.edu 37 1 216052380 216052380 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_206933.2 -1 reviewed p.P2762S 1.000 225 0% 214 36% 0 - probably_damaging(1) tolerated(0.31) deleterious(0.527) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III IARS2 55699 genome.wustl.edu 37 1 220269519 220269519 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018060.3 +1 validated p.G114E 1.000 215 0% 227 26.9% 5 40% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase TP53BP2 7159 genome.wustl.edu 37 1 224008996 224008996 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001031685.2 -1 reviewed p.C34Y 1.000 286 0% 256 37.9% 3 33.3% probably_damaging(0.992) tolerated(0.06) deleterious(0.770) NULL LIN9 286826 genome.wustl.edu 37 1 226453982 226453982 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173083.2 -1 provisional p.R306W 1.000 248 0% 301 33.9% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL IBA57 200205 genome.wustl.edu 37 1 228362552 228362552 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001010867.2 +1 validated p.P167 0.000 12 0% 13 38.5% 9 33.3% - - - superfamily_SSF103025 GALNT2 2590 genome.wustl.edu 37 1 230381873 230381873 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004481.3 +1 reviewed p.G265E 1.000 227 0.4% 264 35.6% 14 42.8% probably_damaging(1) tolerated(0.11) deleterious(0.772) HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases SIPA1L2 57568 genome.wustl.edu 37 1 232650228 232650228 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020808.3 -1 validated p.S286 0.000 111 0% 104 28.8% 1 100% - - - NULL PCNXL2 80003 genome.wustl.edu 37 1 233120059 233120059 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000429988 -1 known p.R936* 0.208 17 0% 13 30.8% 35 22.8% - - - NULL LYST 1130 genome.wustl.edu 37 1 235973575 235973575 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000081.2 -1 reviewed p.K181N 0.969 384 0% 400 29.5% 0 - probably_damaging(0.99) tolerated(0.08) deleterious(0.742) NULL NID1 4811 genome.wustl.edu 37 1 236156997 236156997 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002508.2 -1 reviewed p.R901 0.119 6 0.000 8 0.500 58 0% - - - HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain KIF26B 55083 genome.wustl.edu 37 1 245775128 245775128 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018012.3 +1 provisional p.A650T 0.959 20 0% 36 33.3% 1 100% possibly_damaging(0.807) deleterious(0.02) deleterious(0.687) HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases OR13G1 441933 genome.wustl.edu 37 1 247835957 247835957 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001005487.1 -1 provisional p.Y129 0.017 97 0% 104 28.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 SNTG2 54221 genome.wustl.edu 37 2 1271292 1271292 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018968.3 +1 reviewed p.M411I 0.159 88 0% 84 31% 0 - benign(0) tolerated(0.64) neutral(0.003) NULL HS1BP3 64342 genome.wustl.edu 37 2 20840941 20840941 + Splice_Site SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022460.3 -1 reviewed e3-1 1.000 226 0% 236 31.8% 0 - - - - - ATAD2B 54454 genome.wustl.edu 37 2 24046398 24046398 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017552.1 -1 validated p.A621T 1.000 66 0% 71 15.5% 4 0% benign(0.334) deleterious(0.04) neutral(0.454) HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases ASXL2 55252 genome.wustl.edu 37 2 25982440 25982440 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018263.4 -1 validated p.R284* 0.937 365 0% 387 25.6% 0 - - - - NULL FAM59B 150946 genome.wustl.edu 37 2 26410859 26410859 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000380681 +1 known p.R899 0.997 33 0% 42 45.2% 0 - - - - NULL C2orf18 54978 genome.wustl.edu 37 2 26998371 26998371 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017877.3 +1 validated p.R121Q 1.000 175 0.6% 218 34.4% 37 27% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF6,superfamily_SSF103481 PREB 10113 genome.wustl.edu 37 2 27354338 27354338 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013388.4 -1 reviewed p.G400W 0.952 146 0% 156 38.5% 98 45.9% unknown(0) - - NULL TRIM54 57159 genome.wustl.edu 37 2 27528582 27528582 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032546.2 +1 reviewed p.R289H 0.868 30 0% 31 41.9% 1 0% probably_damaging(0.973) deleterious(0.01) deleterious(0.821) NULL EIF2B4 8890 genome.wustl.edu 37 2 27592366 27592366 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_172195.3 -1 reviewed p.E63 1.000 574 0% 630 31.9% 6 0% - - - NULL CCDC121 79635 genome.wustl.edu 37 2 27850624 27850624 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001142683.2 -1 validated p.R177W 0.000 287 0% 237 32.5% 1 0% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) NULL BRE 9577 genome.wustl.edu 37 2 28248190 28248190 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004899.3 +1 validated p.R133Q 0.998 170 0% 102 32.4% 2 100% benign(0.003) tolerated(0.57) neutral(0.006) HMMPfam_BRE TRMT61B 55006 genome.wustl.edu 37 2 29092940 29092940 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017910.3 -1 validated p.P68 0.000 127 0% 157 31.2% 5 40% - - - NULL CAPN14 440854 genome.wustl.edu 37 2 31428272 31428272 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145122.1 -1 validated p.A14 0.006 71 0% 82 26.8% 0 - - - - superfamily_Cysteine proteinases OTX1 5013 genome.wustl.edu 37 2 63280185 63280185 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014562.2 +1 reviewed p.P20 0.023 43 0% 32 37.5% 3 33.3% - - - superfamily_Homeodomain-like ASPRV1 151516 genome.wustl.edu 37 2 70188397 70188397 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152792.2 -1 validated p.L142I 1.000 82 0% 82 30.5% 1 0% probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL ALMS1 7840 genome.wustl.edu 37 2 73680642 73680642 + Silent SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015120.4 +1 reviewed p.R2329 0.000 126 0% 129 27.1% 0 - - - - NULL PTCD3 55037 genome.wustl.edu 37 2 86359497 86359497 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017952.5 +1 validated p.T441 0.066 284 0.4% 279 31.2% 8 37.5% - - - NULL KCNIP3 30818 genome.wustl.edu 37 2 96048205 96048205 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013434.4 +1 reviewed p.A212 0.042 10 0% 15 46.7% 0 - - - - superfamily_EF-hand AFF3 3899 genome.wustl.edu 37 2 100623774 100623774 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001025108.1 -1 reviewed p.I133T 0.011 279 0% 306 30.4% 0 - benign(0.002) tolerated(1) - HMMPfam_AF-4 NPAS2 4862 genome.wustl.edu 37 2 101580600 101580600 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002518.3 +1 reviewed p.I227V 1.000 175 0% 175 36% 1 0% benign(0) tolerated(1) - NULL MAP4K4 9448 genome.wustl.edu 37 2 102476259 102476259 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_145686.2 +1 reviewed p.R546M 0.995 75 0% 66 28.8% 22 27.2% unknown(0) tolerated(0.14) - NULL IL1RL2 8808 genome.wustl.edu 37 2 102849462 102849462 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003854.2 +1 reviewed p.P392L 0.012 176 0% 255 22.7% 6 33.3% possibly_damaging(0.736) tolerated(0.27) neutral(0.302) HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR LOC100287152 100287152 genome.wustl.edu 37 2 105924231 105924231 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002342237.1 +1 model p.V84I 0.928 47 0% 49 20.4% 5 80% - - - NULL PAX8 7849 genome.wustl.edu 37 2 113984805 113984805 + Missense_Mutation SNP G G A rs189229644 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013952.3 -1 reviewed p.P346L 0.929 51 0% 66 27.3% 204 46.5% unknown(0) tolerated(1) - NULL PAX8 7849 genome.wustl.edu 37 2 114000288 114000288 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003466.3 -1 reviewed p.L153M 1.000 289 0% 306 30.7% 69 63.7% probably_damaging(0.976) tolerated(0.3) neutral(0.447) NULL FOXD4L1 200350 genome.wustl.edu 37 2 114257693 114257693 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012184.4 +1 reviewed p.A287V 0.006 12 0% 11 45.5% 0 - benign(0.308) deleterious(0.01) deleterious(0.502) NULL STEAP3 55240 genome.wustl.edu 37 2 120005392 120005392 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_182915.2 +1 validated p.P220 0.001 26 0% 23 30.4% 17 52.9% - - - superfamily_NAD(P)-binding Rossmann-fold domains ERCC3 2071 genome.wustl.edu 37 2 128044466 128044466 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000122.1 -1 reviewed p.D385 0.949 113 0% 149 38.9% 73 24.6% - - - HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases CFC1 55997 genome.wustl.edu 37 2 131356274 131356274 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032545.2 -1 reviewed p.G63V 0.001 179 0% 235 18.3% 0 - probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL LOC653781 653781 genome.wustl.edu 37 2 131414909 131414909 + Missense_Mutation SNP G G A rs78068205 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_929706.3 +1 model p.R859H 1.000 97 0% 93 9.7% 0 - possibly_damaging(0.623) tolerated(0.14) neutral(0.467) HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain FAP 2191 genome.wustl.edu 37 2 163059614 163059614 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004460.2 -1 reviewed p.S363 1.000 212 0% 182 24.7% 3 33.3% - - - HMMPfam_DPPIV_N,superfamily_SSF82171 LRP2 4036 genome.wustl.edu 37 2 170096120 170096120 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004525.2 -1 reviewed p.C1404Y 1.000 210 0% 262 12.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196 UBR3 130507 genome.wustl.edu 37 2 170783469 170783469 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_172070.3 +1 validated p.R776C 1.000 321 0% 377 34.5% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL TTN 7273 genome.wustl.edu 37 2 179468881 179468881 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000356127 -1 known p.R15610H 0.983 250 0% 298 30.9% 0 - possibly_damaging(0.737) - - HMMPfam_fn3,HMMSmart_SM00060 NUP35 129401 genome.wustl.edu 37 2 184016266 184016266 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_138285.3 +1 reviewed p.G143D 1.000 211 0% 215 31.2% 12 25% benign(0.299) tolerated(0.31) neutral(0.119) NULL MSTN 2660 genome.wustl.edu 37 2 190922077 190922077 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005259.2 -1 reviewed p.M345I 1.000 207 0% 184 31% 0 - possibly_damaging(0.934) deleterious(0.01) deleterious(0.786) HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines STAT1 6772 genome.wustl.edu 37 2 191841736 191841736 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007315.3 -1 reviewed p.A630V 1.000 198 0% 193 30.1% 64 1.5% possibly_damaging(0.496) deleterious(0) deleterious(0.610) HMMPfam_SH2,superfamily_SH2 domain HECW2 57520 genome.wustl.edu 37 2 197184242 197184242 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020760.1 -1 provisional p.N458D 0.997 75 0% 71 33.8% 0 - possibly_damaging(0.653) deleterious(0.01) deleterious(0.635) NULL ANKRD44 91526 genome.wustl.edu 37 2 197878305 197878305 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_153697.1 -1 provisional p.A593 0.841 145 0% 167 48.5% 3 0% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK KCTD18 130535 genome.wustl.edu 37 2 201371712 201371712 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152387.2 -1 validated p.V10M 0.986 156 0% 172 23.8% 1 100% benign(0.005) tolerated(0.51) neutral(0.009) NULL BMPR2 659 genome.wustl.edu 37 2 203379664 203379664 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001204.6 +1 reviewed p.E195K 1.000 239 0% 306 23.5% 5 40% possibly_damaging(0.452) tolerated(0.85) neutral(0.148) superfamily_Kinase_like PARD3B 117583 genome.wustl.edu 37 2 206110532 206110532 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152526.4 +1 validated p.A662V 1.000 393 0% 446 33.4% 0 - benign(0.002) tolerated(0.32) neutral(0.024) NULL MAP2 4133 genome.wustl.edu 37 2 210517948 210517948 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002374.3 +1 reviewed p.P18 0.012 87 0% 69 44.9% 0 - - - - NULL ACADL 33 genome.wustl.edu 37 2 211085514 211085514 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001608.3 -1 reviewed p.S30 0.590 173 0% 171 26.9% 0 - - - - NULL FN1 2335 genome.wustl.edu 37 2 216236721 216236722 + Frame_Shift_Del DEL GA GA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_212482.1 -1 reviewed p.Q2209fs 1.000:0.985 - - - - - - - - - HMMSmart_SM00060,superfamily_Fibronectin type III IGFBP5 3488 genome.wustl.edu 37 2 217542919 217542919 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000599.3 -1 validated p.Q201H 1.000 51 0% 60 41.7% 81 1.2% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin_1 DNAJB2 3300 genome.wustl.edu 37 2 220145304 220145304 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006736.5 +1 validated p.R24W 0.998 104 0% 127 31.5% 19 26.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain SPEG 10290 genome.wustl.edu 37 2 220348809 220348809 + Silent SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005876.4 +1 validated p.P2208 0.999 50 0% 60 31.7% 0 - - - - NULL DOCK10 55619 genome.wustl.edu 37 2 225669924 225669924 + Silent SNP G G A rs139394216 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000409802 -1 known p.R76* 0.999 93 0% 100 34% 0 - - - - NULL SPHKAP 80309 genome.wustl.edu 37 2 228886635 228886635 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001142644.1 -1 validated p.N163 1.000 179 0% 200 31.5% 0 - - - - NULL SP100 6672 genome.wustl.edu 37 2 231307786 231307786 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080391.1 +1 validated p.R81H 0.125 207 0% 220 37.3% 4 25% possibly_damaging(0.702) tolerated(0.3) neutral(0.281) HMMPfam_Sp100 B3GNT7 93010 genome.wustl.edu 37 2 232263506 232263506 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_145236.2 +1 validated p.R359H 1.000 12 0% 28 21.4% 4 25% benign(0.076) tolerated(0.13) neutral(0.258) NULL SH3BP4 23677 genome.wustl.edu 37 2 235950102 235950102 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014521.2 +1 reviewed p.P230L 0.000 49 0% 48 31.2% 17 35.2% benign(0.012) tolerated(0.3) neutral(0.029) NULL ANKMY1 51281 genome.wustl.edu 37 2 241463443 241463444 + Frame_Shift_Del DEL CA CA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 CA CA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016552.2 -1 validated p.C475fs 0.000:0.002 - - - - - - - - - superfamily_Ankyrin repeat RNPEPL1 57140 genome.wustl.edu 37 2 241513717 241513717 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018226.3 +1 provisional p.E145K 1.000 34 0% 36 33.3% 390 29.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Peptidase_M1,superfamily_SSF55486 SEPT2 4735 genome.wustl.edu 37 2 242289526 242289531 + In_Frame_Del DEL GCAGAT GCAGAT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 GCAGAT GCAGAT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001008491.1 +1 validated p.MQ345in_frame_del 0.000:0.999:1.000:1.000:1.000:1.000 - - - - - - - - - NULL BRPF1 7862 genome.wustl.edu 37 3 9784768 9784768 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001003694.1 +1 reviewed p.N714 0.839 124 0% 150 30.7% 18 27.7% - - - HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain CAMK1 8536 genome.wustl.edu 37 3 9802445 9802445 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003656.3 -1 reviewed p.G214S 1.000 122 0% 120 29.2% 21 23.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SATB1 6304 genome.wustl.edu 37 3 18391008 18391008 + Missense_Mutation SNP G G C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001131010.1 -1 validated p.T649R 0.999 98 0% 102 12.7% 3 0% possibly_damaging(0.842) deleterious(0) deleterious(0.766) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like KAT2B 8850 genome.wustl.edu 37 3 20167452 20167452 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003884.4 +1 reviewed p.R490H 1.000 115 0% 112 39.3% 3 33.3% probably_damaging(0.999) tolerated(0.13) deleterious(0.743) NULL UBE2E2 7325 genome.wustl.edu 37 3 23631289 23631289 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152653.3 +1 validated p.M191I 1.000 69 0% 53 28.3% 14 0% benign(0) tolerated(1) - HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like GLB1 2720 genome.wustl.edu 37 3 33055720 33055720 + Missense_Mutation SNP C C T rs186781398 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000404.2 -1 reviewed p.C521Y 0.000 151 0% 168 31.5% 178 41.5% benign(0.001) deleterious(0.04) neutral(0.349) NULL CLASP2 23122 genome.wustl.edu 37 3 33648902 33648902 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015097.1 -1 validated p.D500 1.000 187 0% 218 33.5% 0 - - - - superfamily_ARM repeat XYLB 9942 genome.wustl.edu 37 3 38454433 38454433 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005108.3 +1 reviewed p.E514K 0.556 189 0% 178 32% 2 50% benign(0) tolerated(0.92) - HMMPfam_FGGY_C,superfamily_SSF53067 XIRP1 165904 genome.wustl.edu 37 3 39228103 39228103 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_194293.2 -1 provisional p.R945Q 1.000 16 0% 18 33.3% 0 - benign(0.198) deleterious(0) neutral(0.464) NULL ZNF197 10168 genome.wustl.edu 37 3 44672664 44672664 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006991.3 +1 reviewed p.P167 0.000 142 0% 157 23.6% 5 60% - - - NULL TDGF1 6997 genome.wustl.edu 37 3 46621508 46621508 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003212.3 +1 reviewed p.G136S 0.997 90 0% 133 29.3% 3 33.3% benign(0.385) deleterious(0.03) deleterious(0.487) HMMPfam_CFC SLC26A6 65010 genome.wustl.edu 37 3 48668557 48668557 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000414944 -1 known p.W142* 0.308 60 0% 69 36.2% 19 52.6% benign(0) tolerated(0.42) neutral(0.014) NULL AMIGO3 386724 genome.wustl.edu 37 3 49756614 49756614 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198722.2 -1 validated p.N95 0.322 12 0% 24 25% 15 53.3% - - - superfamily_SSF52058 TKT 7086 genome.wustl.edu 37 3 53263442 53263442 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001064.2 -1 validated p.A373V 1.000 32 0% 37 24.3% 403 4.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding) FLNB 2317 genome.wustl.edu 37 3 58139357 58139357 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001457.3 +1 reviewed p.A2208V 1.000 78 0% 85 27.1% 59 42.3% possibly_damaging(0.948) tolerated(0.5) neutral(0.401) HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin SUCLG2 8801 genome.wustl.edu 37 3 67568757 67568757 + Missense_Mutation SNP G G C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003848.3 -1 reviewed p.Q192E 1.000 152 0% 165 33.9% 3 33.3% benign(0) tolerated(0.07) neutral(0.319) HMMPfam_ATP-grasp_2,superfamily_SSF56059 ROBO2 6092 genome.wustl.edu 37 3 77614212 77614212 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002942.3 +1 reviewed p.A597V 1.000 133 0% 174 29.9% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III EPHA3 2042 genome.wustl.edu 37 3 89391190 89391190 + Missense_Mutation SNP G G C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005233.5 +1 reviewed p.S419T 1.000 61 0% 73 24.7% 0 - benign(0) tolerated(0.05) neutral(0.345) HMMPfam_fn3,superfamily_Fibronectin type III ABI3BP 25890 genome.wustl.edu 37 3 100621501 100621501 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015429.3 -1 validated p.R104* 0.957 185 0% 218 29.8% 2 0% - - - NULL STXBP5L 9515 genome.wustl.edu 37 3 120760595 120760595 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014980.2 +1 validated p.A112 1.000 327 0.3% 293 37.2% 0 - - - - HMMSmart_SM00320,superfamily_WD40 repeat-like POLQ 10721 genome.wustl.edu 37 3 121207647 121207647 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_199420.3 -1 validated p.A1377 0.000 237 0% 291 33.7% 1 100% - - - NULL CASR 846 genome.wustl.edu 37 3 122002836 122002836 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000388.3 +1 reviewed p.L679M 1.000 71 0% 69 20.3% 0 - possibly_damaging(0.929) deleterious(0.01) deleterious(0.782) HMMPfam_7tm_3 KALRN 8997 genome.wustl.edu 37 3 124209631 124209631 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001024660.3 +1 reviewed p.R1494Q 1.000 106 0% 139 28.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like LOC100288624 100288624 genome.wustl.edu 37 3 124281708 124281708 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002342367.1 -1 model p.S59N 1.000 51 0% 52 38.5% 0 - - - - NULL SLC12A8 84561 genome.wustl.edu 37 3 124906155 124906155 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024628.5 -1 validated p.V106I 0.999 49 0% 59 25.4% 19 36.8% unknown(0) deleterious(0) - HMMPfam_AA_permease C3orf56 285311 genome.wustl.edu 37 3 126915772 126915772 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000398112 +1 known p.L82F 0.000 50 0% 47 25.5% 0 - possibly_damaging(0.649) - - NULL COL6A6 131873 genome.wustl.edu 37 3 130286021 130286021 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001102608.1 +1 provisional p.E586D 0.000 30 0% 29 20.7% 0 - benign(0.001) - - HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like DZIP1L 199221 genome.wustl.edu 37 3 137816679 137816679 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173543.2 -1 validated p.C171Y 1.000 84 0% 67 28.4% 3 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1 ATR 545 genome.wustl.edu 37 3 142226864 142226864 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001184.3 -1 reviewed p.R1647H 1.000 146 0% 189 36.5% 1 0% benign(0.422) deleterious(0.03) deleterious(0.502) superfamily_ARM repeat PAQR9 344838 genome.wustl.edu 37 3 142681163 142681163 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198504.2 -1 validated p.A339V 0.951 39 0% 42 11.9% 0 - benign(0) tolerated(0.22) neutral(0.042) NULL SLC9A9 285195 genome.wustl.edu 37 3 143567007 143567007 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173653.3 -1 reviewed p.G53E 1.000 179 0% 244 33.6% 0 - probably_damaging(0.979) deleterious(0) deleterious(0.867) HMMPfam_Na_H_Exchanger P2RY14 9934 genome.wustl.edu 37 3 150931811 150931811 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001081455.1 -1 reviewed p.A98 0.010 106 0% 106 39.6% 7 0% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like IL12A 3592 genome.wustl.edu 37 3 159708016 159708016 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000882.2 +1 reviewed p.V61M 0.000 86 0% 108 13% 0 - possibly_damaging(0.711) deleterious(0.03) deleterious(0.621) HMMPfam_IL12 PIK3CA 5290 genome.wustl.edu 37 3 178916876 178916876 + Missense_Mutation SNP G G A rs121913287 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006218.2 +1 reviewed p.R88Q 1.000 143 0% 141 23.4% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B GNB4 59345 genome.wustl.edu 37 3 179137245 179137245 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021629.3 -1 reviewed p.R49C 1.000 339 0% 357 35.3% 1 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 USP13 8975 genome.wustl.edu 37 3 179472564 179472564 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003940.2 +1 validated p.R615* 1.000 212 0.5% 243 33.3% 0 - - - - HMMPfam_UCH,superfamily_SSF54001 CLCN2 1181 genome.wustl.edu 37 3 184070829 184070830 + Frame_Shift_Del DEL CT CT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004366.4 -1 reviewed p.P713fs 0.995:0.997 - - - - - - - - - HMMPfam_CBS ETV5 2119 genome.wustl.edu 37 3 185769852 185769853 + Frame_Shift_Del DEL GA GA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004454.2 -1 validated p.L426fs 0.985:1.000 - - - - - - - - - HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785 ST6GAL1 6480 genome.wustl.edu 37 3 186760952 186760952 + Missense_Mutation SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003032.2 +1 reviewed p.E154A 0.999 123 0% 119 33.6% 4 0% possibly_damaging(0.892) tolerated(0.48) neutral(0.362) HMMPfam_Glyco_transf_29 RTP1 132112 genome.wustl.edu 37 3 186917489 186917489 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_153708.2 +1 validated p.D141 1.000 28 0% 39 38.5% 0 - - - - NULL MASP1 5648 genome.wustl.edu 37 3 186938837 186938837 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001879.5 -1 reviewed p.A632D 1.000 274 0% 283 32.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases BCL6 604 genome.wustl.edu 37 3 187446312 187446312 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001130845.1 -1 reviewed p.R459H 1.000 60 0% 72 47.2% 21 38% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) NULL BDH1 622 genome.wustl.edu 37 3 197249620 197249620 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004051.4 -1 reviewed p.D100 1.000 99 0% 130 33.8% 6 50% - - - HMMPfam_adh_short,superfamily_NAD(P)-bd LRCH3 84859 genome.wustl.edu 37 3 197553835 197553835 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032773.2 +1 provisional p.L243I 1.000 214 0% 232 28.4% 1 100% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) superfamily_SSF52058 IDUA 3425 genome.wustl.edu 37 4 995819 995819 + Missense_Mutation SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000203.3 +1 reviewed p.Q281P 0.158 34 0% 28 46.4% 97 26.8% benign(0.149) tolerated(0.06) neutral(0.336) HMMPfam_Glyco_hydro_39,superfamily_Glyco_hydro_cat KIAA1239 57495 genome.wustl.edu 37 4 37447416 37447416 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001144990.1 +1 validated p.S1269N 1.000 112 0% 139 18.7% 0 - benign(0.001) tolerated(0.08) neutral(0.300) superfamily_WD40_like UCHL1 7345 genome.wustl.edu 37 4 41266144 41266144 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004181.4 +1 reviewed p.N184S 1.000 196 0% 231 24.7% 3 0% benign(0.005) tolerated(0.31) neutral(0.027) HMMPfam_Peptidase_C12,superfamily_SSF54001 GABRA4 2557 genome.wustl.edu 37 4 46995362 46995362 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000809.2 -1 reviewed p.A27V 1.000 58 0% 65 29.2% 0 - possibly_damaging(0.753) - - NULL FRYL 285527 genome.wustl.edu 37 4 48514624 48514624 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015030.1 -1 validated p.A2673 0.315 153 0% 161 31.7% 8 25% - - - superfamily_ARM repeat LRRC66 339977 genome.wustl.edu 37 4 52862252 52862252 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001024611.1 -1 provisional p.R312 0.000 85 0% 85 25.9% 1 0% - - - NULL LOC100288413 100288413 genome.wustl.edu 37 4 53611521 53611521 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002342451.1 -1 model p.P56L 0.337 175 0% 212 21.2% 2 0% - - - NULL SCFD2 152579 genome.wustl.edu 37 4 54231483 54231483 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152540.3 -1 validated p.T209N 1.000 113 0% 135 34.8% 10 50% possibly_damaging(0.694) tolerated(0.29) neutral(0.278) NULL KIT 3815 genome.wustl.edu 37 4 55599284 55599284 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000222.2 +1 reviewed p.R804W 1.000 194 0% 245 29.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like KIAA1211 57482 genome.wustl.edu 37 4 57180590 57180590 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020722.1 +1 validated p.R308C 0.000 18 0% 21 23.8% 1 0% unknown(0) deleterious(0.02) - NULL RUFY3 22902 genome.wustl.edu 37 4 71659508 71659508 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001037442.2 +1 validated p.R448 1.000 46 0% 51 33.3% 4 50% benign(0.005) tolerated(0.09) neutral(0.296) NULL ANKRD17 26057 genome.wustl.edu 37 4 74008365 74008365 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032217.3 -1 reviewed p.R693C 1.000 116 0% 109 34.9% 2 50% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Ank,superfamily_Ankyrin repeat EREG 2069 genome.wustl.edu 37 4 75246855 75246855 + Splice_Site SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001432.2 +1 validated e3+1 1.000 245 0% 238 28.2% 0 - - - - - CCDC158 339965 genome.wustl.edu 37 4 77247038 77247038 + Frame_Shift_Del DEL T T - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001042784.1 -1 validated p.K1043fs 0.009 - - - - - - - - - NULL SOWAHB 345079 genome.wustl.edu 37 4 77816859 77816859 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001029870.1 -1 provisional p.T715I 0.912 173 0% 183 25.7% 1 0% possibly_damaging(0.903) tolerated(0.21) neutral(0.402) superfamily_ANK TRPC3 7222 genome.wustl.edu 37 4 122853690 122853690 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001130698.1 -1 validated p.A241 0.977 47 0% 59 39% 0 - - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK HSPA4L 22824 genome.wustl.edu 37 4 128726860 128726860 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014278.2 +1 provisional p.A386T 1.000 239 0% 321 29.9% 0 - benign(0.135) tolerated(0.31) neutral(0.038) HMMPfam_HSP70,superfamily_SSF100920 C4orf33 132321 genome.wustl.edu 37 4 130023766 130023766 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001099783.1 +1 validated p.M1V 0.998 152 0% 172 23.8% 0 - benign(0.003) tolerated(0.2) neutral(0.049) NULL MAML3 55534 genome.wustl.edu 37 4 140810641 140810643 + In_Frame_Del DEL TGC TGC - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 TGC TGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018717.4 -1 validated p.Q650in_frame_del 0.000:0.003:0.005 - - - - - - - - - NULL MAB21L2 10586 genome.wustl.edu 37 4 151505013 151505013 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006439.4 +1 reviewed p.L278 1.000 42 0% 52 32.7% 0 - - - - HMMPfam_Mab-21 FAM149A 25854 genome.wustl.edu 37 4 187073162 187073162 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001006655.2 +1 validated p.E17K 0.997 160 0% 153 31.4% 6 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAT1 2195 genome.wustl.edu 37 4 187530956 187530956 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005245.3 -1 reviewed p.T3356M 0.657 153 0% 192 30.2% 30 33.3% benign(0.255) tolerated(0.08) neutral(0.327) HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like UBE2QL1 134111 genome.wustl.edu 37 5 6491376 6491376 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145161.1 +1 provisional p.R134S 1.000 128 0% 138 31.9% 2 0% probably_damaging(0.974) tolerated(0.17) deleterious(0.475) HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like ZFR 51663 genome.wustl.edu 37 5 32380216 32380216 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016107.3 -1 validated p.A902T 1.000 115 0% 169 32% 43 51.1% probably_damaging(0.979) tolerated(0.2) deleterious(0.471) HMMPfam_DZF,HMMSmart_DZF HCN1 348980 genome.wustl.edu 37 5 45262465 45262465 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021072.2 -1 validated p.P744L 0.902 102 0% 136 26.5% 0 - benign(0.223) tolerated(0.23) neutral(0.064) NULL HCN1 348980 genome.wustl.edu 37 5 45262792 45262792 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021072.2 -1 validated p.A635V 0.997 316 0% 324 35.5% 0 - benign(0.007) tolerated(0.17) neutral(0.059) NULL IL6ST 3572 genome.wustl.edu 37 5 55247829 55247830 + Frame_Shift_Ins INS - - A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002184.2 -1 reviewed p.P542fs 1.000:1.000 - - - - - - - - - HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III MARVELD2 153562 genome.wustl.edu 37 5 68728826 68728826 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001038603.2 +1 validated p.K470R 1.000 192 0% 234 36.8% 5 80% probably_damaging(0.999) tolerated(0.15) deleterious(0.732) HMMPfam_Occludin_ELL ZNF366 167465 genome.wustl.edu 37 5 71756437 71756437 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152625.1 -1 provisional p.L296P 1.000 25 0% 56 25% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers TMEM171 134285 genome.wustl.edu 37 5 72419443 72419443 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173490.6 +1 validated p.A81 0.004 115 0% 141 34% 0 - - - - NULL RGNEF 64283 genome.wustl.edu 37 5 72980695 72980695 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080479.2 +1 reviewed p.E7K 0.989 170 0% 224 27.2% 3 0% benign(0) deleterious(0) neutral(0.445) NULL RASGRF2 5924 genome.wustl.edu 37 5 80382766 80382766 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006909.1 +1 validated p.R462C 1.000 93 0% 114 21.9% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like ARRDC3 57561 genome.wustl.edu 37 5 90672440 90672440 + Frame_Shift_Del DEL G G - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020801.2 -1 validated p.L170fs 1.000 - - - - - - - - - NULL ERAP2 64167 genome.wustl.edu 37 5 96244727 96244727 + Missense_Mutation SNP G G C rs112136175 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001130140.1 +1 validated p.S692T 0.033 169 0.6% 178 33.7% 6 16.6% benign(0.167) tolerated(0.26) neutral(0.049) NULL RAPGEF6 51735 genome.wustl.edu 37 5 130797681 130797681 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016340.5 -1 validated p.T861A 1.000 123 0% 119 28.6% 0 - possibly_damaging(0.929) tolerated(0.55) neutral(0.383) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF CDC25C 995 genome.wustl.edu 37 5 137622226 137622226 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001790.3 -1 reviewed p.V374M 1.000 139 0% 143 39.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase CTNNA1 1495 genome.wustl.edu 37 5 138268381 138268381 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001903.2 +1 validated p.G805R 1.000 72 0% 75 22.7% 714 42.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin IK 3550 genome.wustl.edu 37 5 140038610 140038610 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006083.3 +1 reviewed p.R346H 1.000 240 0% 261 30.3% 168 30.3% probably_damaging(0.995) tolerated(0.27) deleterious(0.491) NULL PCDHB1 29930 genome.wustl.edu 37 5 140431583 140431583 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013340.2 +1 reviewed p.G176 0.000 24 0% 31 32.3% 0 - - - - HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHB2 56133 genome.wustl.edu 37 5 140475977 140475977 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018936.2 +1 reviewed p.A535T 0.998 47 0% 44 29.5% 2 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PCDHGA3 56112 genome.wustl.edu 37 5 140723815 140723815 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018916.3 +1 reviewed p.T72M 0.338 43 0% 40 27.5% 0 - benign(0.036) tolerated(0.15) neutral(0.243) HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like ARAP3 64411 genome.wustl.edu 37 5 141051674 141051674 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022481.5 -1 reviewed p.C527Y 1.000 56 0% 60 15% 6 0% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP ARAP3 64411 genome.wustl.edu 37 5 141059549 141059549 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022481.5 -1 reviewed p.A169T 0.011 72 0% 74 25.7% 3 0% benign(0.001) tolerated(0.42) neutral(0.014) NULL SPINK5 11005 genome.wustl.edu 37 5 147480113 147480113 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001127698.1 +1 reviewed p.G397S 0.983 266 0.4% 257 22.6% 0 - probably_damaging(1) tolerated(0.18) deleterious(0.556) HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors G3BP1 10146 genome.wustl.edu 37 5 151175080 151175080 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005754.2 +1 reviewed p.Q161 0.988 225 0% 198 33.3% 8 25% - - - NULL WWC1 23286 genome.wustl.edu 37 5 167891774 167891774 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015238.2 +1 reviewed p.R986H 1.000 43 0% 53 32.1% 52 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLIT3 6586 genome.wustl.edu 37 5 168098456 168098456 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003062.2 -1 validated p.R1292C 1.000 20 0% 13 38.5% 18 11.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2 DOCK2 1794 genome.wustl.edu 37 5 169472845 169472845 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004946.2 +1 validated p.C1301Y 1.000 176 0% 186 14% 6 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL NPM1 4869 genome.wustl.edu 37 5 170833402 170833402 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001037738.2 +1 reviewed p.A258V 0.804 316 0% 392 32.1% 45 77.7% benign(0.001) deleterious(0) neutral(0.445) NULL SH3PXD2B 285590 genome.wustl.edu 37 5 171833330 171833330 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001017995.2 -1 validated p.M61I 1.000 242 0% 263 34.2% 2 0% benign(0.002) tolerated(1) - HMMPfam_PX,HMMSmart_PX,superfamily_PX TSPAN17 26262 genome.wustl.edu 37 5 176078876 176078876 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012171.1 +1 validated p.R87Q 0.997 205 0% 205 30.7% 23 30.4% probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_Tetraspannin,PatternScan_TM4_1 UNC5A 90249 genome.wustl.edu 37 5 176295130 176295130 + Splice_Site SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_133369.2 +1 validated e3-1 1.000 55 0% 70 37.1% 0 - - - - - UIMC1 51720 genome.wustl.edu 37 5 176396247 176396248 + Frame_Shift_Del DEL AT AT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 AT AT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016290.3 -1 provisional p.I170fs 0.911:0.190 - - - - - - - - - NULL NSD1 64324 genome.wustl.edu 37 5 176636892 176636892 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022455.4 +1 reviewed p.R498* 0.956 129 0% 134 38.1% 0 - - - - NULL TBC1D9B 23061 genome.wustl.edu 37 5 179290628 179290628 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198868.2 -1 validated p.T1191 0.018 36 0% 53 26.4% 320 31.8% - - - NULL SERPINB9 5272 genome.wustl.edu 37 6 2890513 2890513 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004155.4 -1 validated p.A339T 0.000 77 0% 77 29.9% 18 5.5% benign(0.001) tolerated(0.79) neutral(0.001) HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin DSP 1832 genome.wustl.edu 37 6 7580324 7580324 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004415.2 +1 reviewed p.Q1301* 1.000 43 0% 64 35.9% 4 25% - - - NULL FAM8A1 51439 genome.wustl.edu 37 6 17608570 17608570 + Nonstop_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016255.2 +1 validated p.*414W 1.000 145 0% 137 24.1% 1 100% - - - NULL SLC17A2 10246 genome.wustl.edu 37 6 25916038 25916040 + In_Frame_Del DEL CCT CCT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 CCT CCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005835.2 -1 validated p.G330in_frame_del 1.000:1.000:0.998 - - - - - - - - - HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter ZNF192 7745 genome.wustl.edu 37 6 28121056 28121056 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006298.2 +1 validated p.Q333R 0.944 184 0% 192 28.6% 2 50% probably_damaging(0.962) tolerated(0.59) neutral(0.410) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers SCAND3 114821 genome.wustl.edu 37 6 28554398 28554398 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_052923.1 -1 provisional p.T33A 0.000 254 0% 239 29.7% 0 - benign(0.001) tolerated(0.52) neutral(0.009) NULL RPP21 79897 genome.wustl.edu 37 6 30314232 30314232 + Missense_Mutation SNP G G A rs148620646 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024839.1 +1 provisional p.V89I 0.986 39 0% 60 40% 208 41.3% probably_damaging(0.996) tolerated(0.16) deleterious(0.521) HMMPfam_Rpr2 BAG6 7917 genome.wustl.edu 37 6 31607320 31607320 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004639.3 -1 reviewed p.R1087Q 1.000 110 0% 132 35.6% 32 18.7% possibly_damaging(0.763) tolerated(0.3) neutral(0.311) NULL C6orf25 80739 genome.wustl.edu 37 6 31691597 31691597 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_138272.1 +1 reviewed p.V81 0.011 26 0% 40 27.5% 0 - - - - NULL RING1 6015 genome.wustl.edu 37 6 33179715 33179715 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002931.3 +1 reviewed p.S352N 1.000 43 0% 32 43.8% 39 17.9% unknown(0) tolerated(0.59) - NULL RGL2 5863 genome.wustl.edu 37 6 33263160 33263160 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004761.3 -1 validated p.V354M 0.771 54 0% 61 41% 18 50% possibly_damaging(0.76) deleterious(0) deleterious(0.726) HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF ITPR3 3710 genome.wustl.edu 37 6 33634929 33634929 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002224.2 +1 validated p.P525 0.006 65 0% 90 37.8% 9 33.3% - - - HMMPfam_RYDR_ITPR,superfamily_SSF100909 MLN 4295 genome.wustl.edu 37 6 33768882 33768882 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002418.2 -1 reviewed p.A20V 0.996 49 0% 76 30.3% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL MDGA1 266727 genome.wustl.edu 37 6 37622621 37622621 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_153487.3 -1 validated p.G223S 0.976 185 0% 200 40.5% 0 - benign(0.018) tolerated(0.1) neutral(0.287) HMMSmart_SM00409,superfamily_Immunoglobulin DAAM2 23500 genome.wustl.edu 37 6 39867872 39867872 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015345.2 +1 validated p.R899H 0.507 67 0% 83 37.3% 3 0% benign(0) tolerated(0.17) neutral(0.059) HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain) LRFN2 57497 genome.wustl.edu 37 6 40359689 40359689 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020737.1 -1 provisional p.T788M 1.000 36 0% 61 18% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RPL7L1 285855 genome.wustl.edu 37 6 42854004 42854004 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198486.2 +1 provisional p.G181 0.998 435 0% 530 25.3% 40 20% unknown(0) deleterious(0) - superfamily_Ribosomal_L30 CUL9 23113 genome.wustl.edu 37 6 43152295 43152295 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015089.2 +1 validated p.R83W 0.912 138 0% 144 31.9% 3 33.3% unknown(0) deleterious(0) - NULL TMEM63B 55362 genome.wustl.edu 37 6 44116062 44116062 + Missense_Mutation SNP T T A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018426.1 +1 validated p.V354E 1.000 72 0% 118 31.4% 108 51.8% possibly_damaging(0.598) deleterious(0.01) deleterious(0.613) NULL EYS 346007 genome.wustl.edu 37 6 65303024 65303024 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001142800.1 -1 reviewed p.Y1288C 0.000 254 0.4% 236 25.4% 0 - probably_damaging(0.956) - - superfamily_Concanavalin A-like lectins/glucanases EEF1A1 1915 genome.wustl.edu 37 6 74229068 74229068 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001402.5 -1 reviewed p.T106A 1.000 237 0% 224 24.1% 7615 31.5% benign(0) deleterious(0.03) neutral(0.364) HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases ARMC2 84071 genome.wustl.edu 37 6 109274397 109274397 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032131.4 +1 validated p.Q586 0.000 54 0% 64 20.3% 1 100% - - - superfamily_ARM-type_fold LOC100287481 100287481 genome.wustl.edu 37 6 109786988 109786988 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002342664.1 +1 model p.R57H 0.000 115 0.9% 138 29% 3 33.3% - - - NULL LOC100287430 100287430 genome.wustl.edu 37 6 116579866 116579866 + RNA SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XR_078343.1 -1 model NULL 1.000 49 0% 57 10.5% 2 0% possibly_damaging(0.873) - - - DSE 29940 genome.wustl.edu 37 6 116757693 116757693 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080976.1 +1 reviewed p.A688T 0.997 83 0% 80 31.2% 16 12.5% benign(0.006) tolerated(0.32) neutral(0.024) NULL KIAA0408 9729 genome.wustl.edu 37 6 127765414 127765414 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014702.4 -1 validated p.V642A 0.999 103 0% 103 35% 2 0% possibly_damaging(0.892) tolerated(0.43) neutral(0.365) NULL L3MBTL3 84456 genome.wustl.edu 37 6 130392134 130392134 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032438.1 +1 validated p.S369L 1.000 288 0% 342 30.1% 1 100% probably_damaging(0.992) tolerated(0.43) neutral(0.461) HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT EPB41L2 2037 genome.wustl.edu 37 6 131191053 131191053 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001431.3 -1 validated p.V753M 0.999 143 0% 149 26.8% 53 39.6% possibly_damaging(0.909) deleterious(0.01) deleterious(0.768) NULL TAAR1 134864 genome.wustl.edu 37 6 132966459 132966459 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_138327.1 -1 provisional p.N228 0.000 208 0% 211 40.8% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 KIAA1244 57221 genome.wustl.edu 37 6 138584571 138584571 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020340.4 +1 validated p.R651W 1.000 47 0% 64 26.6% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMSmart_Sec7 KIAA1244 57221 genome.wustl.edu 37 6 138645227 138645227 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020340.4 +1 validated p.A1646V 1.000 18 0% 20 50% 10 30% probably_damaging(0.998) tolerated(0.4) deleterious(0.490) NULL ADGB 79747 genome.wustl.edu 37 6 147047263 147047263 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024694.3 +1 provisional p.S761Y 0.023 252 0% 276 42% 0 - benign(0.002) tolerated(0.95) - NULL UST 10090 genome.wustl.edu 37 6 149285599 149285599 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005715.2 +1 validated p.R194Q 1.000 161 0% 165 21.2% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMPfam_HS2ST PPP1R14C 81706 genome.wustl.edu 37 6 150535929 150535929 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_030949.2 +1 validated p.A119V 1.000 282 0% 298 25.5% 8 0% benign(0.002) tolerated(0.19) neutral(0.050) HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor IYD 389434 genome.wustl.edu 37 6 150690205 150690205 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_203395.2 +1 reviewed p.C13Y 1.000 116 0% 161 30.4% 0 - probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL SYNE1 23345 genome.wustl.edu 37 6 152765701 152765701 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000367248 -1 known p.A786V 0.470 146 0% 119 32.8% 0 - - - - superfamily_Spectrin repeat RGS17 26575 genome.wustl.edu 37 6 153345472 153345472 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012419.4 -1 reviewed p.E123 1.000 388 0% 429 31.9% 0 - - - - HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam SOD2 6648 genome.wustl.edu 37 6 160106041 160106041 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000636.2 -1 reviewed p.R123H 0.998 181 0% 195 36.4% 95 17.8% probably_damaging(0.997) deleterious(0.03) deleterious(0.831) HMMPfam_Sod_Fe_C,superfamily_SODismutase WTAP 9589 genome.wustl.edu 37 6 160164749 160164749 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004906.3 +1 reviewed p.Q66 1.000 125 0% 144 37.5% 20 10% - - - NULL MAP3K4 4216 genome.wustl.edu 37 6 161530935 161530935 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005922.2 +1 reviewed p.R1462H 0.016 107 0% 136 33.8% 59 40.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase CCR6 1235 genome.wustl.edu 37 6 167550423 167550423 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004367.5 +1 reviewed p.T235 0.055 245 0% 271 33.9% 1 0% - - - HMMPfam_7tm_1,superfamily_SSF81321 WDR27 253769 genome.wustl.edu 37 6 170058393 170058393 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_182552.3 -1 validated p.A461T 0.006 156 0% 164 22% 16 43.7% benign(0.242) tolerated(0.64) neutral(0.028) NULL INTS1 26173 genome.wustl.edu 37 7 1523451 1523451 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080453.2 -1 validated p.S1156 0.592 32 0% 39 28.2% 111 33.3% - - - NULL INTS1 26173 genome.wustl.edu 37 7 1526307 1526307 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080453.2 -1 validated p.R977Q 1.000 24 0% 18 50% 27 29.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ELFN1 392617 genome.wustl.edu 37 7 1786588 1786588 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001128636.2 +1 validated p.R786W 1.000 18 0% 10 60% 5 0% - - - NULL SNX8 29886 genome.wustl.edu 37 7 2314786 2314786 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013321.1 -1 provisional p.R127C 0.998 99 0% 111 44.1% 21 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain FOXK1 221937 genome.wustl.edu 37 7 4800834 4800834 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001037165.1 +1 validated p.L612 0.615 20 0% 27 40.7% 10 10% - - - NULL CYTH3 9265 genome.wustl.edu 37 7 6210230 6210230 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004227.3 -1 reviewed p.D253 0.979 193 0% 216 28.7% 7 0% - - - superfamily_Sec7 domain COL28A1 340267 genome.wustl.edu 37 7 7413150 7413150 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001037763.2 -1 validated p.P796L 0.992 109 0% 131 35.1% 3 66.6% probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMSmart_SM00327,superfamily_vWA-like GLCCI1 113263 genome.wustl.edu 37 7 8095093 8095093 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_138426.2 +1 validated p.R243C 0.996 284 0% 355 33.2% 7 14.2% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PHF14 9678 genome.wustl.edu 37 7 11030443 11030443 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000303905 +1 known p.Q338 1.000 412 0% 442 30.3% 3 33.3% - - - HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD SP8 221833 genome.wustl.edu 37 7 20824186 20824186 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_182700.4 -1 validated p.R417H 1.000 5 0.000 12 0.500 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers AVL9 23080 genome.wustl.edu 37 7 32612990 32612990 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015060.1 +1 provisional p.A510 0.011 101 0% 140 34.3% 19 52.6% - - - HMMPfam_Avl9 KIAA0895 23366 genome.wustl.edu 37 7 36374749 36374749 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001100425.1 -1 validated p.A302 0.407 127 0% 140 28.6% 1 100% - - - NULL TRGV3 6976 genome.wustl.edu 37 7 38398343 38398343 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000390346 -1 known p.D42N 0.006 242 0% 273 32.6% 2 0% probably_damaging(1) tolerated(0.28) deleterious(0.531) HMMPfam_V-set,superfamily_Immunoglobulin GLI3 2737 genome.wustl.edu 37 7 42004970 42004970 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000168.5 -1 reviewed p.S1234N 0.000 46 0% 57 10.5% 1 0% benign(0) deleterious(0.01) neutral(0.406) NULL TBRG4 9238 genome.wustl.edu 37 7 45144233 45144233 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004749.2 -1 validated p.R271W 0.998 41 0% 50 20% 96 34.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SUN3 256979 genome.wustl.edu 37 7 48033954 48033954 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000453071 -1 known p.R197H 0.778 228 0% 307 27% 0 - - - - HMMPfam_Sad1_UNC EGFR 1956 genome.wustl.edu 37 7 55242454 55242454 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005228.3 +1 reviewed p.V742I 1.000 138 0% 151 29.8% 2 50% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP ENSG00000247634 0 genome.wustl.edu 37 7 66416154 66416154 + RNA SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000500273 -1 known NULL 0.000 44 0% 58 37.9% 0 - - - - - WBSCR17 64409 genome.wustl.edu 37 7 70885903 70885903 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022479.1 +1 reviewed p.P258 0.086 88 0% 126 35.7% 2 0% - - - HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases CLIP2 7461 genome.wustl.edu 37 7 73752969 73752969 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003388.4 +1 reviewed p.P105S 1.000 44 0% 61 34.4% 4 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain STYXL1 51657 genome.wustl.edu 37 7 75625777 75625777 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000341238 -1 known p.E280K 0.001 209 0% 225 28.4% 35 51.4% benign(0.012) - - NULL KIAA1324L 222223 genome.wustl.edu 37 7 86541476 86541476 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001142749.2 -1 validated p.S694N 0.981 160 0% 164 34.8% 0 - possibly_damaging(0.5) tolerated(1) neutral(0.167) superfamily_Mannose 6-phosphate receptor domain COL1A2 1278 genome.wustl.edu 37 7 94029548 94029548 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000089.3 +1 reviewed p.P58H 0.010 105 0% 108 12% 403 5.2% unknown(0) tolerated(0.26) - HMMPfam_Collagen PEG10 23089 genome.wustl.edu 37 7 94293686 94293686 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001040152.1 +1 reviewed p.P273L 0.984 20 0% 17 41.2% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL LMTK2 22853 genome.wustl.edu 37 7 97833343 97833343 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014916.3 +1 reviewed p.L1443P 0.233 120 0% 114 36% 2 50% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL PTCD1 26024 genome.wustl.edu 37 7 99022550 99022550 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015545.2 -1 validated p.D535 1.000 64 0% 99 35.4% 11 27.2% - - - HMMPfam_PPR AZGP1 563 genome.wustl.edu 37 7 99564772 99564772 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001185.3 -1 validated p.R251W 0.000 74 0% 118 31.4% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin SRRT 51593 genome.wustl.edu 37 7 100485397 100485397 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015908.5 +1 validated p.A748V 0.914 130 0% 151 28.5% 65 12.3% benign(0) tolerated(0.18) neutral(0.056) HMMPfam_ARS2 MOGAT3 346606 genome.wustl.edu 37 7 100839427 100839427 + Silent SNP C C T rs183966186 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000440203 -1 known p.A304 0.000 33 0% 40 32.5% 0 - - - - NULL CUX1 1523 genome.wustl.edu 37 7 101747648 101747648 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_181552.2 +1 reviewed p.R147* 1.000 169 0% 209 35.4% 1 0% - - - NULL LRRC17 10234 genome.wustl.edu 37 7 102584675 102584675 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001031692.2 +1 validated p.T316I 0.996 74 0% 71 21.1% 0 - benign(0) tolerated(0.22) neutral(0.042) HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like RELN 5649 genome.wustl.edu 37 7 103202103 103202103 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005045.3 -1 reviewed p.S1802L 0.986 227 0.4% 228 29.4% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL RINT1 60561 genome.wustl.edu 37 7 105183047 105183047 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021930.4 +1 validated p.E156K 1.000 182 0% 174 36.8% 2 50% possibly_damaging(0.903) deleterious(0.01) deleterious(0.764) NULL LAMB4 22798 genome.wustl.edu 37 7 107684240 107684242 + In_Frame_Del DEL TTC TTC - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 TTC TTC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007356.2 -1 validated p.E1476in_frame_del 0.081:0.717:0.732 - - - - - - - - - NULL FOXP2 93986 genome.wustl.edu 37 7 114271582 114271582 + Splice_Site SNP G G C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_148898.2 +1 reviewed e6-1 0.135 29 0% 39 30.8% 0 - - - - - CADPS2 93664 genome.wustl.edu 37 7 122033566 122033566 + Silent SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000397721 -1 known p.G582* 0.005 129 0% 189 33.9% 8 62.5% - - - NULL METTL2B 55798 genome.wustl.edu 37 7 128140980 128140981 + Frame_Shift_Del DEL TA TA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 TA TA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018396.2 +1 reviewed p.Y314fs 1.000:1.000 - - - - - - - - - superfamily_S-adenosyl-L-methionine-dependent methyltransferases TSGA13 114960 genome.wustl.edu 37 7 130353969 130353969 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_052933.2 -1 provisional p.L238P 0.203 95 0% 141 27% 0 - benign(0.009) deleterious(0) neutral(0.445) NULL CDK5 1020 genome.wustl.edu 37 7 150753861 150753861 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004935.3 -1 validated p.D73N 1.000 63 0% 98 34.7% 40 22.5% benign(0.001) tolerated(0.05) neutral(0.345) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase CDK5 1020 genome.wustl.edu 37 7 150754041 150754041 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004935.3 -1 validated p.R50W 0.676 130 0% 123 29.3% 32 31.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase RNF32 140545 genome.wustl.edu 37 7 156469275 156469275 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_030936.2 +1 reviewed p.V339M 0.865 95 0% 116 25% 4 25% benign(0.052) tolerated(0.28) neutral(0.035) HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box DLGAP2 9228 genome.wustl.edu 37 8 1645370 1645370 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004745.3 +1 reviewed p.L872 1.000 12 0% 13 53.8% 0 - - - - HMMPfam_GKAP MTMR7 9108 genome.wustl.edu 37 8 17218630 17218630 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004686.4 -1 reviewed p.Y155C 1.000 289 0% 357 32.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II MTUS1 57509 genome.wustl.edu 37 8 17612080 17612080 + Missense_Mutation SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001001924.2 -1 reviewed p.W413G 0.433 188 0% 219 33.3% 2 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ZNF395 55893 genome.wustl.edu 37 8 28207583 28207584 + Frame_Shift_Del DEL GA GA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018660.2 -1 validated p.P442fs 1.000:0.971 - - - - - - - - - NULL NRG1 3084 genome.wustl.edu 37 8 32620786 32620786 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013960.3 +1 reviewed p.C440Y 1.000 243 0% 249 27.7% 2 0% possibly_damaging(0.563) deleterious(0) deleterious(0.637) HMMPfam_Neuregulin WHSC1L1 54904 genome.wustl.edu 37 8 38173512 38173512 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_023034.1 -1 reviewed p.R635H 1.000 327 0% 345 32.2% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL ANK1 286 genome.wustl.edu 37 8 41573293 41573293 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001142446.1 -1 reviewed p.N526 0.000 138 0% 187 35.8% 0 - - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK SLC20A2 6575 genome.wustl.edu 37 8 42275367 42275367 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006749.3 -1 provisional p.A638D 1.000 64 0% 49 26.5% 27 51.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HGSNAT 138050 genome.wustl.edu 37 8 43053074 43053074 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152419.2 +1 reviewed p.G569R 0.999 223 0% 299 33.8% 15 53.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF2261 ENSG00000215179 0 genome.wustl.edu 37 8 47885954 47885954 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000399732 -1 known p.L93 1.000 99 0% 85 27.1% 0 - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ZFHX4 79776 genome.wustl.edu 37 8 77767647 77767647 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024721.4 +1 validated p.S2785 0.000 102 1% 97 25.8% 0 - - - - NULL CPNE3 8895 genome.wustl.edu 37 8 87568393 87568393 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003909.3 +1 reviewed p.A440T 1.000 238 0% 263 30.4% 16 31.2% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300 ZHX2 22882 genome.wustl.edu 37 8 123966184 123966184 + Missense_Mutation SNP A A T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014943.3 +1 reviewed p.S812C 1.000 118 0% 132 25% 29 10.3% probably_damaging(0.989) deleterious(0.04) deleterious(0.788) NULL FER1L6 654463 genome.wustl.edu 37 8 124975572 124975572 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001039112.2 +1 validated p.P44L 0.044 201 0% 225 32% 0 - benign(0) tolerated(0.37) neutral(0.019) NULL MTSS1 9788 genome.wustl.edu 37 8 125565267 125565267 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014751.4 -1 validated p.T745M 0.000 217 0% 277 25.6% 0 - benign(0.02) tolerated(0.08) neutral(0.301) NULL SLA 6503 genome.wustl.edu 37 8 134063091 134063091 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006748.3 -1 validated p.R84H 0.799 114 0% 117 26.5% 2 0% benign(0.181) tolerated(0.3) neutral(0.045) HMMPfam_SH3_1,HMMSmart_SM00326 ZFAT 57623 genome.wustl.edu 37 8 135614147 135614147 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020863.3 -1 reviewed p.S605 0.000 46 0% 70 25.7% 0 - - - - NULL FAM135B 51059 genome.wustl.edu 37 8 139155256 139155256 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015912.3 -1 validated p.S1213G 1.000 208 0% 207 23.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases DENND3 22898 genome.wustl.edu 37 8 142161874 142161874 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014957.2 +1 validated p.V258I 0.039 77 0% 88 45.5% 11 0% benign(0.031) tolerated(0.24) neutral(0.039) HMMPfam_DENN,HMMSmart_SM00799 GPR20 2843 genome.wustl.edu 37 8 142367040 142367040 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005293.2 -1 validated p.M328I 1.000 15 0% 21 28.6% 2 0% benign(0.001) tolerated(0.39) neutral(0.016) superfamily_Family A G protein-coupled receptor-like FLJ43860 389690 genome.wustl.edu 37 8 142500217 142500217 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_207414.2 -1 validated p.E233K 0.491 11 0% 20 20% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) NULL LYPD2 137797 genome.wustl.edu 37 8 143831823 143831823 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_205545.1 -1 provisional p.G86S 0.997 26 0% 29 17.2% 0 - probably_damaging(1) tolerated(0.26) deleterious(0.534) HMMPfam_UPAR_LY6,HMMSmart_LU,superfamily_SSF57302 TONSL 4796 genome.wustl.edu 37 8 145662018 145662018 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013432.4 -1 reviewed p.R646H 0.001 26 0% 41 26.8% 15 53.3% possibly_damaging(0.682) tolerated(0.2) neutral(0.292) NULL ZNF250 58500 genome.wustl.edu 37 8 146107390 146107390 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021061.3 -1 validated p.S398N 0.007 146 0% 182 24.2% 22 36.3% benign(0) tolerated(0.76) neutral(0.001) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers KCNV2 169522 genome.wustl.edu 37 9 2718738 2718738 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000423608 +1 known p.R285C 0.998 22 0% 21 42.9% 0 - unknown(0) deleterious(0) - NULL SH3GL2 6456 genome.wustl.edu 37 9 17795741 17795741 + Nonstop_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003026.2 +1 validated p.*353Y 0.781 115 0% 166 31.3% 0 - - - - NULL ACO1 48 genome.wustl.edu 37 9 32436296 32436296 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002197.2 +1 reviewed p.D716 0.768 191 0% 247 33.6% 46 45.6% - - - HMMPfam_Aconitase_C,superfamily_Aconitase TOPORS 10210 genome.wustl.edu 37 9 32543930 32543930 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005802.3 -1 reviewed p.P198H 0.098 166 0% 178 28.1% 3 0% unknown(0) tolerated(0.12) - NULL NDUFB6 4712 genome.wustl.edu 37 9 32573023 32573023 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002493.3 -1 reviewed p.L12 1.000 21 0% 18 22.2% 135 42.2% - - - HMMPfam_NDUF_B6 SMU1 55234 genome.wustl.edu 37 9 33073753 33073753 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018225.2 -1 validated p.A26 0.000 170 0% 194 27.8% 25 40% - - - HMMSmart_SM00667 STOML2 30968 genome.wustl.edu 37 9 35101482 35101482 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013442.1 -1 provisional p.R174C 1.000 147 0% 167 29.3% 82 40.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Band_7,HMMSmart_PHB RECK 8434 genome.wustl.edu 37 9 36091184 36091184 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021111.2 +1 reviewed p.S310N 1.000 173 0% 177 28.8% 1 0% possibly_damaging(0.837) deleterious(0.02) deleterious(0.703) NULL TJP2 9414 genome.wustl.edu 37 9 71835938 71835938 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004817.3 +1 reviewed p.R160W 1.000 59 0% 85 31.8% 2 50% benign(0.002) tolerated(0.11) neutral(0.272) NULL GNAQ 2776 genome.wustl.edu 37 9 80336317 80336317 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002072.2 -1 provisional p.T334 0.998 258 0% 307 35.5% 14 50% - - - HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases CEP78 84131 genome.wustl.edu 37 9 80851320 80851320 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001098802.1 +1 validated p.H18Q 1.000 9 0.000 13 0.385 3 33.3% benign(0.244) deleterious(0.01) neutral(0.430) NULL ZCCHC6 79670 genome.wustl.edu 37 9 88937965 88937965 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024617.3 -1 validated p.G900 0.000 183 0% 167 24.6% 6 0% - - - NULL SLC35D2 11046 genome.wustl.edu 37 9 99084343 99084343 + Missense_Mutation SNP A A T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007001.2 -1 validated p.I284N 1.000 235 0% 258 31.4% 13 53.8% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_TPT ANKS6 203286 genome.wustl.edu 37 9 101536174 101536174 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000444472 -1 known p.R71W 0.045 24 0% 20 45% 2 100% - - - NULL EPB41L4B 54566 genome.wustl.edu 37 9 112017854 112017854 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_019114.3 -1 validated p.T369M 0.040 122 0% 142 35.2% 19 52.6% probably_damaging(0.995) tolerated(0.08) deleterious(0.758) HMMPfam_FERM_C,superfamily_PH domain-like LPAR1 1902 genome.wustl.edu 37 9 113704159 113704159 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001401.3 -1 reviewed p.N112S 1.000 106 0% 109 22.9% 5 0% benign(0.382) tolerated(0.37) neutral(0.141) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like DBC1 1620 genome.wustl.edu 37 9 121971091 121971091 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014618.2 -1 validated p.A351T 1.000 237 0% 260 25.4% 0 - benign(0.002) tolerated(0.34) neutral(0.023) NULL FBXW2 26190 genome.wustl.edu 37 9 123540779 123540779 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012164.3 -1 reviewed p.Q179* 1.000 65 0% 72 31.9% 15 6.6% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 URM1 81605 genome.wustl.edu 37 9 131151567 131151567 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001135947.1 +1 validated p.N72 0.940 56 0% 67 35.8% 90 33.3% - - - HMMPfam_Urm1 ASB6 140459 genome.wustl.edu 37 9 132400352 132400352 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017873.2 -1 reviewed p.T328I 0.939 86 0% 110 29.1% 31 16.1% benign(0.014) tolerated(0.36) neutral(0.021) NULL NUP214 8021 genome.wustl.edu 37 9 134002928 134002928 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005085.2 +1 reviewed p.A21 0.063 229 0% 240 26.3% 4 25% - - - NULL PRRC2B 84726 genome.wustl.edu 37 9 134340363 134340363 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013318.3 +1 validated p.R540* 0.999 44 0% 54 25.9% 12 25% - - - NULL ABCA2 20 genome.wustl.edu 37 9 139910599 139910599 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000479446 -1 known p.Q394R 0.583 42 0% 31 19.4% 21 9.5% - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases PNPLA7 375775 genome.wustl.edu 37 9 140391722 140391722 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001098537.1 -1 validated p.G644S 0.999 15 0% 30 36.7% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like CACNA1B 774 genome.wustl.edu 37 9 140772631 140772631 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000718.2 +1 validated p.N82 1.000 29 0% 21 33.3% 0 - - - - superfamily_Voltage-gated potassium channels PHYH 5264 genome.wustl.edu 37 10 13330437 13330437 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006214.3 -1 reviewed p.R201W 0.103 37 0% 41 36.6% 16 43.7% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_PhyH PLXDC2 84898 genome.wustl.edu 37 10 20534320 20534320 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032812.7 +1 provisional p.H453 1.000 278 0% 346 28.3% 18 38.8% - - - NULL SVIL 6840 genome.wustl.edu 37 10 29812498 29812498 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021738.2 -1 reviewed p.P1015 0.015 248 0% 229 34.5% 2 0% - - - NULL LOC728064 728064 genome.wustl.edu 37 10 43197473 43197473 + RNA SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XR_015196.2 -1 model NULL 0.000 103 0% 101 24.8% 0 - - - - - GPRIN2 9721 genome.wustl.edu 37 10 46999756 46999756 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014696.3 +1 validated p.C292 1.000 70 0% 72 15.3% 0 - - - - NULL PPYR1 5540 genome.wustl.edu 37 10 47087064 47087064 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005972.4 +1 validated p.C94Y 1.000 248 0% 247 15.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ANK3 288 genome.wustl.edu 37 10 61822901 61822901 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020987.2 -1 reviewed p.D4188G 1.000 226 0.9% 214 33.6% 2 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_DEATH_like MYPN 84665 genome.wustl.edu 37 10 69934251 69934251 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032578.2 +1 validated p.I801T 0.492 321 0% 302 28.8% 0 - benign(0) tolerated(0.21) neutral(0.044) NULL CHST3 9469 genome.wustl.edu 37 10 73767297 73767297 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004273.4 +1 reviewed p.R170C 1.000 11 0% 14 42.9% 12 8.3% probably_damaging(0.998) deleterious(0.04) deleterious(0.823) HMMPfam_Sulfotransfer_1,superfamily_SSF52540 TTC18 118491 genome.wustl.edu 37 10 75104841 75104841 + Missense_Mutation SNP T T A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_145170.3 -1 validated p.Q197H 0.998 79 0% 76 11.8% 0 - probably_damaging(0.986) tolerated(0.27) neutral(0.468) NULL PTEN 5728 genome.wustl.edu 37 10 89712011 89712011 + Frame_Shift_Del DEL C C - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000371953 +1 known p.T210fs 1.000 - - - - - - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 PLCE1 51196 genome.wustl.edu 37 10 96066255 96066255 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016341.3 +1 reviewed p.G1898 0.993 180 0% 217 38.2% 17 35.2% - - - HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) RRP12 23223 genome.wustl.edu 37 10 99126844 99126844 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015179.3 -1 validated p.R1001C 1.000 80 0% 95 23.2% 29 51.7% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat KCNIP2 30819 genome.wustl.edu 37 10 103590857 103590857 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014591.4 -1 reviewed p.G47 0.995 45 0% 60 26.7% 0 - - - - NULL PDCD11 22984 genome.wustl.edu 37 10 105182764 105182764 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014976.1 +1 validated p.T839 0.005 135 0% 167 29.3% 12 33.3% - - - NULL SHOC2 8036 genome.wustl.edu 37 10 112767399 112767399 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007373.3 +1 reviewed p.L424 0.475 230 0.4% 261 33.7% 1 100% - - - HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like NRAP 4892 genome.wustl.edu 37 10 115381869 115381869 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198060.2 -1 validated p.S843L 0.958 178 0% 183 30.1% 0 - possibly_damaging(0.8) tolerated(0.14) deleterious(0.550) HMMPfam_Nebulin,HMMSmart_SM00227 GRK5 2869 genome.wustl.edu 37 10 121196346 121196346 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005308.2 +1 reviewed p.V308I 1.000 48 0% 91 28.6% 3 0% benign(0.007) tolerated(0.16) neutral(0.059) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PLEKHA1 59338 genome.wustl.edu 37 10 124189205 124189205 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000368988 +1 known p.P336H 1.000 203 0% 186 33.3% 18 22.2% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL C10orf137 26098 genome.wustl.edu 37 10 127422028 127422028 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015608.2 +1 validated p.S361Y 1.000 78 0% 82 28% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) NULL DHX32 55760 genome.wustl.edu 37 10 127527584 127527584 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018180.2 -1 reviewed p.G623S 0.999 146 0% 202 32.7% 18 44.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1605 FAM196A 642938 genome.wustl.edu 37 10 128973602 128973602 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001039762.2 -1 validated p.T353M 0.312 104 0% 114 23.7% 1 100% probably_damaging(1) deleterious(0.03) deleterious(0.865) NULL FAM196A 642938 genome.wustl.edu 37 10 128973720 128973720 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001039762.2 -1 validated p.L314M 1.000 37 0% 38 26.3% 0 - possibly_damaging(0.852) tolerated(0.26) neutral(0.362) NULL DOCK1 1793 genome.wustl.edu 37 10 129207592 129207592 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000398025 +1 known p.T1472I 1.000 215 0% 216 36.6% 1 0% benign(0.053) tolerated(0.07) neutral(0.323) NULL MKI67 4288 genome.wustl.edu 37 10 129921155 129921155 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002417.4 -1 reviewed p.R93C 1.000 209 0% 212 25.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SMAD/FHA domain LRRC27 80313 genome.wustl.edu 37 10 134169377 134169377 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001143757.1 +1 validated p.P386L 0.000 67 0% 89 29.2% 1 100% benign(0.001) tolerated(0.52) neutral(0.009) NULL NKX6-2 84504 genome.wustl.edu 37 10 134598588 134598588 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_177400.2 -1 validated p.A222 1.000 62 0% 79 40.5% 0 - - - - NULL GPR123 84435 genome.wustl.edu 37 10 134902411 134902411 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000392609 +1 known p.L365F 1.000 6 0.000 14 0.357 0 - unknown(0) - - NULL PHRF1 57661 genome.wustl.edu 37 11 609696 609696 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020901.2 +1 validated p.A1413T 0.000 12 0% 11 36.4% 15 33.3% benign(0.087) tolerated(0.81) neutral(0.007) NULL PIDD 55367 genome.wustl.edu 37 11 800881 800881 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_145886.2 -1 reviewed p.V600M 0.538 10 0% 10 50% 30 23.3% probably_damaging(0.976) deleterious(0) deleterious(0.863) NULL PNPLA2 57104 genome.wustl.edu 37 11 822398 822398 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020376.2 +1 provisional p.R163H 1.000 75 0% 70 24.3% 270 25.1% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like MUC5B 727897 genome.wustl.edu 37 11 1268392 1268392 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002458.1 +1 validated p.A3431T 0.000 669 0% 767 19.6% 44 29.5% unknown(0) - - NULL TSSC4 10078 genome.wustl.edu 37 11 2424406 2424406 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005706.2 +1 reviewed p.T181 0.012 29 0% 23 47.8% 92 31.5% - - - NULL NAP1L4 4676 genome.wustl.edu 37 11 2972531 2972531 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005969.3 -1 reviewed p.D360 0.935 395 0.3% 402 23.4% 82 28% - - - NULL CARS 833 genome.wustl.edu 37 11 3039695 3039695 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001014437.1 -1 reviewed p.T524 0.048 134 0% 131 38.9% 24 29.1% - - - HMMPfam_tRNA-synt_1e,superfamily_SSF52374 OR52D1 390066 genome.wustl.edu 37 11 5510726 5510726 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001005163.2 +1 validated p.T264A 0.099 279 0% 381 32.5% 0 - probably_damaging(0.991) tolerated(0.22) deleterious(0.486) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR56A1 120796 genome.wustl.edu 37 11 6048011 6048012 + Frame_Shift_Del DEL CT CT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001001917.2 -1 validated p.Q308fs 0.189:0.306 - - - - - - - - - superfamily_SSF81321 DNHD1 144132 genome.wustl.edu 37 11 6592508 6592508 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144666.2 +1 provisional p.P4589L 0.973 38 0% 42 31% 14 28.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Dynein_heavy C11orf16 56673 genome.wustl.edu 37 11 8947357 8947357 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020643.2 -1 validated p.P286L 0.000 49 0% 42 28.6% 3 33.3% probably_damaging(0.981) deleterious(0.01) deleterious(0.831) NULL SWAP70 23075 genome.wustl.edu 37 11 9771475 9771476 + Frame_Shift_Del DEL AG AG - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015055.2 +1 validated p.K576fs 0.738:0.782 - - - - - - - - - NULL GALNTL4 374378 genome.wustl.edu 37 11 11362546 11362546 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198516.2 -1 validated p.W366* 1.000 76 0% 95 30.5% 11 0% - - - superfamily_Nucleotide-diphospho-sugar transferases SLC6A5 9152 genome.wustl.edu 37 11 20636346 20636346 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004211.3 +1 reviewed p.S369 0.989 233 0.4% 206 37.9% 0 - - - - HMMPfam_SNF CSTF3 1479 genome.wustl.edu 37 11 33127159 33127159 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001326.2 -1 reviewed p.M180T 1.000 245 0% 291 36.1% 1 100% possibly_damaging(0.944) tolerated(0.5) neutral(0.399) HMMSmart_SM00386,superfamily_TPR-like CAT 847 genome.wustl.edu 37 11 34478311 34478311 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001752.3 +1 reviewed p.D335N 1.000 140 0% 129 41.9% 55 29% probably_damaging(0.997) tolerated(0.31) deleterious(0.493) superfamily_Catalase_N,HMMPfam_Catalase TTC17 55761 genome.wustl.edu 37 11 43469634 43469634 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018259.5 +1 validated p.I916 0.995 88 0% 89 32.6% 13 38.4% - - - superfamily_SSF48452 PRDM11 56981 genome.wustl.edu 37 11 45246271 45246271 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020229.2 +1 validated p.R450C 0.974 72 0% 80 38.8% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CHRM4 1132 genome.wustl.edu 37 11 46407117 46407117 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000741.2 -1 reviewed p.R331W 0.012 140 0% 135 31.1% 1 100% probably_damaging(0.991) deleterious(0.01) deleterious(0.850) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like CELF1 10658 genome.wustl.edu 37 11 47498872 47498872 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001025596.2 -1 reviewed p.P290L 1.000 172 0% 192 31.8% 22 31.8% unknown(0) tolerated(0.13) - NULL OR5W2 390148 genome.wustl.edu 37 11 55681162 55681162 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001001960.1 -1 provisional p.E299D 0.001 79 0% 82 37.8% 0 - benign(0.001) tolerated(0.58) neutral(0.005) superfamily_SSF81321 MPEG1 219972 genome.wustl.edu 37 11 58978238 58978238 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001039396.1 -1 validated p.A701T 0.000 280 0.4% 304 34.2% 8 0% benign(0) deleterious(0) neutral(0.445) NULL MS4A1 931 genome.wustl.edu 37 11 60229914 60229914 + Missense_Mutation SNP A A T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021950.3 +1 reviewed p.M23L 0.000 128 0% 156 30.1% 2 0% benign(0.011) tolerated(0.17) neutral(0.059) NULL DAK 26007 genome.wustl.edu 37 11 61110107 61110107 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015533.3 +1 reviewed p.A251V 0.000 66 0% 85 42.4% 107 39.2% benign(0) tolerated(0.4) neutral(0.016) HMMPfam_Dak1,superfamily_DAK1/DegV-like INCENP 3619 genome.wustl.edu 37 11 61897513 61897513 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001040694.1 +1 validated p.G172S 0.000 28 0% 26 50% 25 44% benign(0.078) tolerated(1) neutral(0.005) NULL EEF1G 1937 genome.wustl.edu 37 11 62339366 62339366 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001404.4 -1 reviewed p.A60V 1.000 141 0% 165 30.9% 2697 34.7% probably_damaging(1) tolerated(0.16) deleterious(0.559) HMMPfam_GST_N,superfamily_Thioredoxin-like PLCB3 5331 genome.wustl.edu 37 11 64026008 64026008 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000932.2 +1 reviewed p.R359H 1.000 43 0% 58 27.6% 26 3.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases ACTN3 89 genome.wustl.edu 37 11 66325338 66325338 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001104.1 +1 reviewed p.Q356* 1.000 96 0% 97 23.7% 0 - - - - HMMPfam_Spectrin,superfamily_Spectrin repeat SHANK2 22941 genome.wustl.edu 37 11 70332333 70332333 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012309.3 -1 reviewed p.T760 0.952 83 0% 93 26.9% 11 0% - - - NULL SHANK2 22941 genome.wustl.edu 37 11 70507860 70507860 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012309.3 -1 reviewed p.V5I 1.000 60 0% 81 34.6% 0 - possibly_damaging(0.444) tolerated(0.1) neutral(0.431) NULL SHANK2 22941 genome.wustl.edu 37 11 70858349 70858349 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000338508 -1 known p.S8 0.993 71 0% 95 32.6% 1 0% - - - NULL IL18BP 10068 genome.wustl.edu 37 11 71712523 71712523 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001039659.1 +1 reviewed p.H144 0.010 39 0% 54 40.7% 110 3.6% - - - superfamily_Immunoglobulin ARHGEF17 9828 genome.wustl.edu 37 11 73021677 73021677 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014786.3 +1 validated p.T665I 0.000 60 0% 71 31% 14 7.1% benign(0) deleterious(0.01) neutral(0.406) NULL ODZ4 26011 genome.wustl.edu 37 11 78423680 78423680 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001098816.2 -1 validated p.R1301W 1.000 106 0% 119 31.1% 0 - probably_damaging(0.961) deleterious(0) deleterious(0.849) superfamily_SSF101898,superfamily_TolB_C PRCP 5547 genome.wustl.edu 37 11 82560123 82560123 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_199418.2 -1 reviewed p.F318L 1.000 137 0% 139 35.3% 31 54.8% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Peptidase_S28 FAT3 120114 genome.wustl.edu 37 11 92616191 92616191 + Missense_Mutation SNP C C T rs186899262 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001008781.2 +1 validated p.T4190M 1.000 63 0% 59 32.2% 0 - probably_damaging(0.989) deleterious(0.03) deleterious(0.804) NULL KDM4D 55693 genome.wustl.edu 37 11 94730903 94730903 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018039.2 +1 validated p.R123* 0.496 99 0% 115 31.3% 0 - - - - NULL SESN3 143686 genome.wustl.edu 37 11 94924618 94924618 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144665.2 -1 provisional p.R98C 1.000 144 0% 148 37.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PA26 MAML2 84441 genome.wustl.edu 37 11 95825683 95825683 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032427.1 -1 validated p.S504 0.018 36 0% 59 39% 3 0% - - - NULL ZBTB16 7704 genome.wustl.edu 37 11 113934474 113934474 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001018011.1 +1 reviewed p.R151Q 0.990 41 0% 40 35% 0 - possibly_damaging(0.938) deleterious(0.04) deleterious(0.732) NULL HYOU1 10525 genome.wustl.edu 37 11 118919064 118919064 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001130991.1 -1 reviewed p.E758K 1.000 57 0% 67 20.9% 80 25% probably_damaging(0.998) tolerated(0.31) deleterious(0.501) superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain HINFP 25988 genome.wustl.edu 37 11 119002692 119002692 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015517.3 +1 validated p.Q226* 1.000 83 0% 81 37% 16 18.7% - - - superfamily_SSF57667 OR8G5 219865 genome.wustl.edu 37 11 124120682 124120682 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000341493 +1 known p.T87I 0.000 384 0% 463 30.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SNX19 399979 genome.wustl.edu 37 11 130749537 130749537 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014758.2 -1 validated p.Q943R 1.000 348 0% 307 30.3% 17 35.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Nexin_C FKBP4 2288 genome.wustl.edu 37 12 2908295 2908295 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002014.3 +1 reviewed p.R186W 1.000 85 0% 77 32.5% 61 49.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FKBP_C,superfamily_SSF54534 CD4 920 genome.wustl.edu 37 12 6924064 6924064 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000616.3 +1 validated p.V171 0.012 108 0% 107 21.5% 10 0% - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set,superfamily_Immunoglobulin PTPN6 5777 genome.wustl.edu 37 12 7069996 7069996 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_080549.3 +1 reviewed p.C615Y 0.981 111 0% 97 33% 240 25% unknown(0) - - NULL ETNK1 55500 genome.wustl.edu 37 12 22812025 22812025 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018638.4 +1 reviewed p.L254P 1.000 241 0% 297 33% 0 - benign(0.037) tolerated(0.27) neutral(0.036) HMMPfam_Choline_kinase,superfamily_Kinase_like KIF21A 55605 genome.wustl.edu 37 12 39756911 39756911 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017641.3 -1 validated p.L336 0.900 310 0% 303 17.8% 0 - - - - HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases LRRK2 120892 genome.wustl.edu 37 12 40687426 40687426 + Missense_Mutation SNP G G T rs58559150 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198578.3 +1 reviewed p.Q923H 0.717 195 0% 196 27.6% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_SSF52058 TMEM106C 79022 genome.wustl.edu 37 12 48358192 48358192 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001143842.1 +1 validated p.G58D 1.000 69 0% 85 18.8% 194 24.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF1356 MLL2 8085 genome.wustl.edu 37 12 49427679 49427679 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003482.3 -1 validated p.Q3603 1.000 39 0% 29 17.2% 8 0% - - - NULL FAM186A 121006 genome.wustl.edu 37 12 50745160 50745160 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145475.1 -1 provisional p.P1819S 0.001 38 0% 38 39.5% 0 - benign(0.001) tolerated(0.36) neutral(0.020) NULL OR10P1 121130 genome.wustl.edu 37 12 56031110 56031110 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_206899.1 +1 provisional p.M145I 0.957 52 0% 71 38% 0 - possibly_damaging(0.442) deleterious(0) deleterious(0.589) HMMPfam_7tm_1,superfamily_SSF81321 DGKA 1606 genome.wustl.edu 37 12 56346873 56346873 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001345.4 +1 reviewed p.E664 1.000 194 0% 235 21.7% 45 2.2% - - - HMMPfam_DAGK_acc,HMMSmart_SM00045 ERBB3 2065 genome.wustl.edu 37 12 56478854 56478854 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001982.2 +1 reviewed p.V104M 0.994 96 0% 114 28.9% 48 41.6% possibly_damaging(0.547) deleterious(0) deleterious(0.630) HMMPfam_Recep_L_domain,superfamily_L domain-like COQ10A 93058 genome.wustl.edu 37 12 56661712 56661712 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144576.3 +1 validated p.R90H 1.000 105 0% 131 23.7% 13 7.6% possibly_damaging(0.885) deleterious(0.01) deleterious(0.752) NULL C12orf56 115749 genome.wustl.edu 37 12 64679739 64679739 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001099676.2 -1 validated p.E245 1.000 256 0% 221 26.2% 1 100% - - - NULL CCT2 10576 genome.wustl.edu 37 12 69981367 69981367 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006431.2 +1 reviewed p.V76A 1.000 237 0% 237 24.1% 37 35.1% benign(0.107) deleterious(0.04) neutral(0.357) PatternScan_TCP1_2,HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like ENSG00000246966 0 genome.wustl.edu 37 12 70932537 70932537 + RNA SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000501222 +1 known NULL 0.002 31 0% 24 50% 0 - - - - - PPP1R12A 4659 genome.wustl.edu 37 12 80226140 80226140 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001143885.1 -1 reviewed p.A207S 1.000 136 0.7% 187 35.3% 4 25% possibly_damaging(0.853) deleterious(0) deleterious(0.773) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat OTOGL 283310 genome.wustl.edu 37 12 80613571 80613573 + In_Frame_Del DEL TTT TTT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 TTT TTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002343203.1 +1 model p.F16in_frame_del 0.783:0.235:0.100 - - - - - - - - - NULL CEP290 80184 genome.wustl.edu 37 12 88508280 88508280 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_025114.3 -1 reviewed p.A657T 1.000 507 0% 549 12.9% 0 - benign(0.195) tolerated(0.08) neutral(0.319) NULL TMTC3 160418 genome.wustl.edu 37 12 88570093 88570093 + Missense_Mutation SNP C C G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_181783.3 +1 reviewed p.P477A 1.000 160 0% 183 41% 1 0% possibly_damaging(0.929) deleterious(0.03) deleterious(0.740) HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans SOCS2 8835 genome.wustl.edu 37 12 93968756 93968756 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003877.3 +1 reviewed p.C133Y 1.000 157 0% 165 32.7% 3 0% benign(0.272) deleterious(0.05) neutral(0.374) HMMSmart_SM00252,superfamily_SH2 domain CRADD 8738 genome.wustl.edu 37 12 94243917 94243917 + Missense_Mutation SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003805.3 +1 reviewed p.Q157P 1.000 49 0% 36 36.1% 24 37.5% possibly_damaging(0.564) tolerated(0.12) neutral(0.453) HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain HAL 3034 genome.wustl.edu 37 12 96370474 96370474 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002108.2 -1 reviewed p.I555 0.918 113 0% 143 33.6% 0 - - - - HMMPfam_PAL,superfamily_L-Aspartase-like NUP37 79023 genome.wustl.edu 37 12 102492925 102492925 + Missense_Mutation SNP T T G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024057.2 -1 provisional p.E136D 0.984 186 0% 213 35.2% 10 50% benign(0.013) tolerated(0.26) neutral(0.035) HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 CHST11 50515 genome.wustl.edu 37 12 105151183 105151183 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018413.5 +1 validated p.R221W 1.000 145 0% 161 39.1% 22 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Sulfotransfer_2 USP30 84749 genome.wustl.edu 37 12 109519795 109519795 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032663.3 +1 validated p.R280W 1.000 175 0% 244 13.5% 3 0% probably_damaging(0.991) deleterious(0.02) deleterious(0.827) HMMPfam_UCH,superfamily_SSF54001 BRAP 8315 genome.wustl.edu 37 12 112121021 112121021 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006768.3 -1 reviewed p.A58V 1.000 245 0% 260 24.6% 1 0% benign(0.221) tolerated(0.07) neutral(0.341) NULL ACAD10 80724 genome.wustl.edu 37 12 112184917 112184917 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001136538.1 +1 reviewed p.A805V 0.224 103 0% 107 31.8% 15 20% benign(0.051) deleterious(0) neutral(0.448) HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like TPCN1 53373 genome.wustl.edu 37 12 113722564 113722564 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001143819.1 +1 validated p.V553I 1.000 378 0.3% 439 21.6% 8 12.5% benign(0.002) tolerated(0.78) neutral(0.001) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CIT 11113 genome.wustl.edu 37 12 120150106 120150106 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007174.1 -1 validated p.C1535 1.000 321 0% 352 12.8% 4 0% - - - HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like MLXIP 22877 genome.wustl.edu 37 12 122623409 122623409 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000319080 +1 known p.R811H 1.000 133 0% 124 40.3% 5 40% benign(0.046) tolerated(0.49) neutral(0.013) NULL KNTC1 9735 genome.wustl.edu 37 12 123082350 123082350 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014708.4 +1 reviewed p.G1476 0.718 110 0% 147 34.7% 0 - - - - NULL GLT1D1 144423 genome.wustl.edu 37 12 129373250 129373250 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144669.1 +1 provisional p.E95G 0.944 203 0% 220 31.8% 0 - benign(0.235) deleterious(0.03) neutral(0.388) NULL NOC4L 79050 genome.wustl.edu 37 12 132632258 132632258 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024078.1 +1 provisional p.D178 0.029 26 0% 33 33.3% 38 34.2% - - - NULL SLC7A1 6541 genome.wustl.edu 37 13 30097541 30097541 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003045.4 -1 validated p.V304A 1.000 45 0% 28 35.7% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_AA_permease SOHLH2 54937 genome.wustl.edu 37 13 36748898 36748898 + Missense_Mutation SNP T T A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017826.2 -1 validated p.K250N 0.824 171 0% 165 31.5% 1 0% possibly_damaging(0.819) deleterious(0.01) deleterious(0.715) HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain FREM2 341640 genome.wustl.edu 37 13 39265724 39265724 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_207361.4 +1 reviewed p.G1415R 0.997 149 0% 177 37.3% 0 - possibly_damaging(0.734) tolerated(0.51) neutral(0.278) NULL FOXO1 2308 genome.wustl.edu 37 13 41134076 41134078 + In_Frame_Del DEL TCA TCA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 TCA TCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002015.3 -1 reviewed p.M517in_frame_del 0.902:1.000:1.000 - - - - - - - - - NULL ATP7B 540 genome.wustl.edu 37 13 52509771 52509771 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000053.2 -1 reviewed p.A1361V 0.999 37 0% 31 45.2% 4 75% possibly_damaging(0.86) tolerated(0.25) neutral(0.369) NULL RNF219 79596 genome.wustl.edu 37 13 79190943 79190943 + Missense_Mutation SNP C C G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024546.3 -1 validated p.S318T 0.525 253 0% 253 18.6% 6 0% benign(0.034) tolerated(0.12) neutral(0.263) NULL SLITRK5 26050 genome.wustl.edu 37 13 88329698 88329698 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015567.1 +1 validated p.F685 0.998 157 0% 159 35.2% 1 0% - - - NULL NALCN 259232 genome.wustl.edu 37 13 101795543 101795543 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_052867.2 -1 validated p.R669H 1.000 409 0% 453 32.9% 0 - probably_damaging(0.979) tolerated(0.16) deleterious(0.481) NULL GAS6 2621 genome.wustl.edu 37 13 114538569 114538569 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000820.2 -1 reviewed p.A210V 0.686 27 0% 18 33.3% 96 13.5% benign(0.083) deleterious(0.01) neutral(0.412) HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196 TMEM55B 90809 genome.wustl.edu 37 14 20927803 20927803 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001100814.1 -1 validated p.C184Y 1.000 157 0% 135 20% 35 20% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Tmemb_55A PNP 4860 genome.wustl.edu 37 14 20943404 20943404 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000270.3 +1 reviewed p.D215 0.997 132 0% 159 36.5% 89 41.5% - - - HMMPfam_PNP_UDP_1,superfamily_SSF53167 HAUS4 54930 genome.wustl.edu 37 14 23416865 23416865 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017815.2 -1 reviewed p.R262C 0.729 88 0% 124 32.3% 77 42.8% benign(0.005) deleterious(0.02) neutral(0.383) NULL CDH24 64403 genome.wustl.edu 37 14 23524530 23524530 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022478.3 -1 validated p.R78 1.000 96 0% 114 29.8% 4 50% - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like ACIN1 22985 genome.wustl.edu 37 14 23528502 23528503 + Frame_Shift_Del DEL TC TC - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014977.3 -1 validated p.E1294fs 0.413:0.452 - - - - - - - - - NULL MYH6 4624 genome.wustl.edu 37 14 23852435 23852435 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002471.3 -1 validated p.A1887V 1.000 78 0% 88 35.2% 0 - benign(0.362) tolerated(0.06) neutral(0.438) HMMPfam_Myosin_tail_1 PRKD1 5587 genome.wustl.edu 37 14 30135304 30135304 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002742.2 -1 validated p.R172C 0.995 183 0% 202 30.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889 MDGA2 161357 genome.wustl.edu 37 14 47770653 47770653 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001113498.1 -1 validated p.L58 0.913 167 0% 175 29.1% 0 - - - - HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726 KTN1 3895 genome.wustl.edu 37 14 56134037 56134037 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001079521.1 +1 validated p.P1086T 0.997 248 0% 249 32.9% 7 57.1% probably_damaging(0.981) tolerated(0.06) deleterious(0.748) NULL C14orf38 729665 genome.wustl.edu 37 14 60030474 60030474 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000281581 -1 known p.T275I 0.155 300 0% 343 30.6% 0 - benign(0.356) tolerated(0.26) neutral(0.147) NULL SPTB 6710 genome.wustl.edu 37 14 65266574 65266574 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001024858.2 -1 reviewed p.E319K 1.000 129 0% 136 35.3% 0 - probably_damaging(0.999) tolerated(0.17) deleterious(0.549) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin ZFYVE26 23503 genome.wustl.edu 37 14 68241778 68241778 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015346.3 -1 reviewed p.L1759F 0.712 225 0% 245 41.6% 4 0% possibly_damaging(0.918) deleterious(0) deleterious(0.813) NULL ENSG00000235812 0 genome.wustl.edu 37 14 70713518 70713518 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000433248 -1 known p.R117H 0.031 68 0% 103 34% 0 - - - - "HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain" ANGEL1 23357 genome.wustl.edu 37 14 77272984 77272984 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015305.3 -1 validated p.P385 0.001 59 0% 57 47.4% 6 16.6% - - - HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos TTC7B 145567 genome.wustl.edu 37 14 91059966 91059966 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001010854.1 -1 provisional p.S657 0.002 49 0% 75 34.7% 11 18.1% - - - superfamily_TPR-like SERPINA1 5265 genome.wustl.edu 37 14 94849219 94849219 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000295.4 -1 reviewed p.G119D 0.971 100 0% 104 35.6% 230 44.3% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins KIAA0284 283638 genome.wustl.edu 37 14 105349540 105349540 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001112726.1 +1 validated p.T249M 1.000 28 0% 29 44.8% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL HERC2 8924 genome.wustl.edu 37 15 28370293 28370293 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004667.4 -1 reviewed p.D4283 1.000 165 0% 205 33.7% 41 31.7% - - - HMMPfam_RCC1,superfamily_RCC1/BLIP-II ARHGAP11B 89839 genome.wustl.edu 37 15 30926497 30926497 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001039841.1 +1 provisional p.L141P 1.000 414 0% 432 26.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP FAN1 22909 genome.wustl.edu 37 15 31206105 31206105 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014967.4 +1 reviewed p.P541H 0.999 253 0% 254 32.7% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL CHRNA7 1139 genome.wustl.edu 37 15 32460294 32460294 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000746.3 +1 reviewed p.G382R 0.998 37 0% 51 11.8% 1 0% probably_damaging(1) tolerated(0.23) deleterious(0.541) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM AQR 9716 genome.wustl.edu 37 15 35166887 35166887 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014691.2 -1 validated p.A1139V 1.000 195 0% 201 30.8% 12 16.6% probably_damaging(0.994) deleterious(0) deleterious(0.897) superfamily_SSF52540 DISP2 85455 genome.wustl.edu 37 15 40661057 40661057 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_033510.1 +1 reviewed p.P915Q 0.991 26 0% 40 25% 0 - benign(0.175) tolerated(0.28) neutral(0.048) NULL DLL4 54567 genome.wustl.edu 37 15 41228833 41228833 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_019074.2 +1 reviewed p.V550M 0.831 39 0% 36 38.9% 11 0% benign(0.042) deleterious(0.01) neutral(0.408) NULL INO80 54617 genome.wustl.edu 37 15 41272614 41272614 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017553.1 -1 reviewed p.Q1493R 1.000 82 0% 122 41.8% 8 37.5% benign(0.068) tolerated(0.62) neutral(0.009) NULL TP53BP1 7158 genome.wustl.edu 37 15 43712845 43712845 + Nonsense_Mutation SNP G G A rs67086944 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001141980.1 -1 validated p.R1447* 0.999 62 0% 53 39.6% 25 12% - - - NULL DUOXA1 90527 genome.wustl.edu 37 15 45411449 45411449 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144565.2 -1 provisional p.S296N 0.001 48 0% 58 32.8% 1 0% benign(0.002) tolerated(0.49) neutral(0.011) NULL DUOX1 53905 genome.wustl.edu 37 15 45444531 45444531 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017434.3 +1 reviewed p.V1081M 1.000 108 0% 148 37.2% 5 40% possibly_damaging(0.903) tolerated(0.06) deleterious(0.680) NULL SLTM 79811 genome.wustl.edu 37 15 59185115 59185115 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024755.2 -1 validated p.R627* 0.980 393 0% 440 28.9% 2 0% - - - NULL VPS13C 54832 genome.wustl.edu 37 15 62147125 62147125 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020821.1 -1 validated p.S3702N 0.923 180 0% 182 28.6% 8 37.5% benign(0.052) deleterious(0.03) neutral(0.367) NULL SMAD3 4088 genome.wustl.edu 37 15 67477184 67477184 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005902.3 +1 reviewed p.V331I 1.000 77 0% 87 28.7% 8 12.5% possibly_damaging(0.904) deleterious(0) deleterious(0.803) HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain TLE3 7090 genome.wustl.edu 37 15 70344792 70344792 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005078.2 -1 validated p.V685 0.999 29 0% 31 12.9% 129 44.1% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like NEIL1 79661 genome.wustl.edu 37 15 75641440 75641440 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024608.2 +1 validated p.G65V 0.984 11 0% 28 28.6% 16 68.7% possibly_damaging(0.645) tolerated(0.06) deleterious(0.548) HMMPfam_Fapy_DNA_glyco,superfamily_N-terminal domain of MutM-like DNA repair proteins UBE2Q2 92912 genome.wustl.edu 37 15 76183289 76183289 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173469.2 +1 validated p.S321 0.261 268 0.4% 279 32.3% 20 15% - - - HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like MTHFS 10588 genome.wustl.edu 37 15 80137573 80137573 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006441.2 -1 validated p.Y197 0.000 160 0% 230 30.9% 49 48.9% - - - HMMPfam_5-FTHF_cyc-lig,superfamily_SSF100950 MESDC2 23184 genome.wustl.edu 37 15 81282061 81282062 + In_Frame_Ins INS - - AGC novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015154.1 -1 validated p.27in_frame_insL 1.000:1.000 - - - - - - - - - NULL C15orf42 90381 genome.wustl.edu 37 15 90127735 90127735 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152259.3 +1 validated p.L385 0.700 54 0% 83 26.5% 0 - - - - NULL ANPEP 290 genome.wustl.edu 37 15 90342540 90342540 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001150.2 -1 reviewed p.P654T 1.000 221 0% 214 33.2% 161 48.4% probably_damaging(0.994) tolerated(0.17) deleterious(0.511) NULL CRTC3 64784 genome.wustl.edu 37 15 91185367 91185367 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022769.3 +1 validated p.L619 1.000 47 0% 76 32.9% 7 42.8% - - - NULL FES 2242 genome.wustl.edu 37 15 91434851 91434851 + Frame_Shift_Del DEL C C - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002005.3 +1 reviewed p.Q534fs 1.000 - - - - - - - - - HMMSmart_SM00252,superfamily_SH2 domain RAB11FIP3 9727 genome.wustl.edu 37 16 570528 570528 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014700.3 +1 validated p.A696T 1.000 76 0% 120 37.5% 139 37.4% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL RAB40C 57799 genome.wustl.edu 37 16 675935 675935 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021168.4 +1 validated p.R127W 1.000 37 0% 39 33.3% 47 46.8% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases RHOT2 89941 genome.wustl.edu 37 16 722747 722747 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_138769.1 +1 provisional p.D483 0.049 90 0% 91 41.8% 446 40.1% - - - HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases NTHL1 4913 genome.wustl.edu 37 16 2096259 2096259 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002528.5 -1 reviewed p.K83R 0.000 60 0% 63 44.4% 32 40.6% benign(0) tolerated(0.22) neutral(0.042) NULL CASKIN1 57524 genome.wustl.edu 37 16 2237257 2237257 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020764.3 -1 validated p.V249M 0.993 145 0% 168 32.7% 4 25% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK RNPS1 10921 genome.wustl.edu 37 16 2314313 2314313 + Missense_Mutation SNP G G A rs140623716 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006711.2 -1 reviewed p.R31C 1.000 300 0% 348 23.9% 31 22.5% unknown(0) tolerated(0.13) - NULL IL32 9235 genome.wustl.edu 37 16 3117467 3117467 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000416912 +1 known p.A35 0.000 99 0% 139 28.8% 27 7.4% - - - NULL SLX4 84464 genome.wustl.edu 37 16 3652147 3652147 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032444.2 -1 provisional p.V308M 0.002 97 0% 97 26.8% 0 - probably_damaging(0.981) tolerated(0.09) deleterious(0.722) NULL LOC342346 342346 genome.wustl.edu 37 16 4650103 4650103 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145011.1 +1 predicted p.L1071M 0.417 46 0% 44 38.6% 0 - probably_damaging(0.981) deleterious(0) deleterious(0.870) NULL ZNF500 26048 genome.wustl.edu 37 16 4812715 4812715 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021646.1 -1 validated p.G153W 0.006 94 0% 112 33.9% 1 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL RBFOX1 54715 genome.wustl.edu 37 16 7383059 7383059 + Silent SNP G G A rs147261087 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_145891.2 +1 reviewed p.P19 0.001 196 0.5% 214 30.4% 0 - - - - NULL TMEM186 25880 genome.wustl.edu 37 16 8890134 8890134 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015421.3 -1 validated p.M106T 0.000 139 0% 155 34.2% 19 36.8% benign(0) tolerated(0.71) neutral(0.002) NULL GRIN2A 2903 genome.wustl.edu 37 16 9862766 9862766 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000833.3 -1 reviewed p.R846H 1.000 67 0% 72 29.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NMDAR2_C GRIN2A 2903 genome.wustl.edu 37 16 10274088 10274088 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000833.3 -1 reviewed p.A61T 0.000 29 0% 29 24.1% 0 - benign(0.042) tolerated(0.76) neutral(0.004) superfamily_Periplasmic binding protein-like I PRM2 5620 genome.wustl.edu 37 16 11370141 11370141 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002762.2 -1 validated p.H29 0.001 56 0% 96 35.4% 0 - - - - HMMPfam_Protamine_P2 LITAF 9516 genome.wustl.edu 37 16 11643479 11643479 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000381810 -1 known p.T167 0.000 30 0% 32 25% 31 19.3% - - - NULL EEF2K 29904 genome.wustl.edu 37 16 22237179 22237179 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013302.3 +1 reviewed p.T43 0.002 85 0% 81 29.6% 9 66.6% - - - NULL ATXN2L 11273 genome.wustl.edu 37 16 28846626 28846626 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_148414.1 +1 reviewed p.H864R 1.000 146 0% 138 23.2% 378 38% benign(0.074) tolerated(0.41) neutral(0.020) NULL QPRT 23475 genome.wustl.edu 37 16 29706326 29706326 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014298.3 +1 reviewed p.A119T 0.007 21 0% 22 54.5% 16 6.2% benign(0.062) tolerated(0.36) neutral(0.024) HMMPfam_QRPTase_C,superfamily_Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase NadC) C-terminal domain YPEL3 83719 genome.wustl.edu 37 16 30106212 30106212 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_031477.4 -1 validated p.N94 0.998 37 0% 42 38.1% 174 29.8% - - - HMMPfam_Yippee CD2BP2 10421 genome.wustl.edu 37 16 30364277 30364277 + RNA SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NR_024465.1 -1 reviewed NULL 0.061 26 0% 15 53.3% 42 30.9% - - - - ITGAL 3683 genome.wustl.edu 37 16 30485612 30485612 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002209.2 +1 reviewed p.G53R 0.998 13 0% 22 27.3% 3 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain PHKG2 5261 genome.wustl.edu 37 16 30768183 30768183 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000294.2 +1 reviewed p.R329Q 1.000 45 0% 47 40.4% 99 21.2% possibly_damaging(0.477) tolerated(0.19) neutral(0.207) NULL ITGAM 3684 genome.wustl.edu 37 16 31332891 31332891 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000632.3 +1 reviewed p.G649R 0.975 317 0% 363 33.6% 0 - probably_damaging(0.998) deleterious(0.03) deleterious(0.839) HMMPfam_Integrin_alpha2,superfamily_SSF69179 SHCBP1 79801 genome.wustl.edu 37 16 46615957 46615957 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024745.4 -1 validated p.A568V 0.001 189 0% 208 34.1% 0 - benign(0.05) tolerated(0.2) neutral(0.052) NULL ABCC11 85320 genome.wustl.edu 37 16 48265751 48265751 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032583.3 -1 reviewed p.V28F 1.000 221 0% 220 30% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL IRX6 79190 genome.wustl.edu 37 16 55363166 55363166 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024335.2 +1 validated p.P426S 0.691 11 0% 27 22.2% 0 - benign(0.011) deleterious(0) neutral(0.445) NULL CES1 1066 genome.wustl.edu 37 16 55854338 55854338 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001025195.1 -1 reviewed p.G249 0.008 132 0% 121 23.1% 2 50% - - - HMMPfam_COesterase,superfamily_SSF53474 CIAPIN1 57019 genome.wustl.edu 37 16 57474720 57474720 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020313.2 -1 validated p.R41C 0.830 120 0% 116 37.9% 7 28.5% possibly_damaging(0.807) deleterious(0.02) deleterious(0.687) HMMPfam_DUF689 SLC9A5 6553 genome.wustl.edu 37 16 67292286 67292286 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004594.2 +1 validated p.R521Q 1.000 72 0% 83 30.1% 0 - benign(0.315) tolerated(0.2) neutral(0.148) NULL ZDHHC1 29800 genome.wustl.edu 37 16 67432530 67432530 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013304.2 -1 validated p.G254C 1.000 48 0% 47 40.4% 86 51.1% probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL RLTPR 146206 genome.wustl.edu 37 16 67681613 67681613 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001013838.1 +1 provisional p.R301H 0.000 31 0% 37 35.1% 5 0% benign(0) tolerated(0.08) neutral(0.300) HMMSmart_SM00368,superfamily_RNI-like AARS 16 genome.wustl.edu 37 16 70296392 70296392 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001605.2 -1 reviewed p.R510C 1.000 146 0% 162 33.3% 67 28.3% probably_damaging(0.999) tolerated(0.13) deleterious(0.743) HMMPfam_tRNA-synt_2c DDX19B 11269 genome.wustl.edu 37 16 70363362 70363362 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007242.4 +1 reviewed p.R259C 1.000 148 0% 161 32.9% 24 20.8% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases AP1G1 164 genome.wustl.edu 37 16 71790016 71790016 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001030007.1 -1 reviewed p.R382* 1.000 169 0% 176 31.2% 2 0% - - - HMMPfam_Adaptin_N,superfamily_ARM repeat MLKL 197259 genome.wustl.edu 37 16 74726293 74726293 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152649.2 -1 validated p.S161L 0.000 312 0% 327 32.4% 3 0% benign(0.005) tolerated(1) - NULL ADAMTS18 170692 genome.wustl.edu 37 16 77359872 77359872 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000378632 -1 known p.T19I 0.952 189 0% 230 30.4% 0 - - - - NULL USP10 9100 genome.wustl.edu 37 16 84778335 84778335 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005153.2 +1 reviewed p.L83P 1.000 201 0% 226 27.9% 3 66.6% - - - HMMPfam_PAM2 SLC7A5 8140 genome.wustl.edu 37 16 87868104 87868104 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003486.5 -1 validated p.F462L 1.000 59 0% 71 28.2% 13 15.3% possibly_damaging(0.452) tolerated(0.55) neutral(0.155) HMMPfam_AA_permease ZC3H18 124245 genome.wustl.edu 37 16 88643849 88643849 + Missense_Mutation SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_144604.3 +1 validated p.E106D 0.973 62 0% 74 35.1% 21 33.3% unknown(0) tolerated(0.14) - NULL GAS8 2622 genome.wustl.edu 37 16 90097747 90097747 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001481.2 +1 reviewed p.R44H 1.000 86 0% 132 28.8% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) NULL WDR81 124997 genome.wustl.edu 37 17 1630974 1630974 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000409644 +1 known p.Q907 1.000 28 0% 51 45.1% 8 12.5% - - - superfamily_WD40 repeat-like RPA1 6117 genome.wustl.edu 37 17 1783946 1783946 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002945.3 +1 validated p.A401V 0.990 158 0% 181 24.3% 30 46.6% benign(0) tolerated(1) - superfamily_Nucleic acid-binding proteins OR1E1 8387 genome.wustl.edu 37 17 3301076 3301076 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003553.2 -1 validated p.P210Q 0.147 130 0% 162 27.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_SSF81321 TRPV1 7442 genome.wustl.edu 37 17 3494357 3494357 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018727.5 -1 reviewed p.G169R 1.000 189 0% 228 34.6% 7 14.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00248,superfamily_Ankyrin repeat SMTNL2 342527 genome.wustl.edu 37 17 4496467 4496467 + Splice_Site SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001114974.1 +1 validated e3+1 0.999 26 0% 24 20.8% 0 - - - - - LOC100288822 100288822 genome.wustl.edu 37 17 4692590 4692590 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002343474.1 -1 model p.A328V 0.010 12 0% 14 50% 0 - - - - NULL PFN1 5216 genome.wustl.edu 37 17 4849935 4849935 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005022.2 -1 reviewed p.K105E 1.000 52 0% 58 34.5% 3667 34.7% benign(0.125) deleterious(0.03) neutral(0.375) HMMPfam_Profilin,HMMSmart_SM00392,superfamily_Profilin (actin-binding protein) TEKT1 83659 genome.wustl.edu 37 17 6716191 6716191 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_053285.1 -1 reviewed p.T271A 1.000 128 0% 166 30.7% 18 77.7% possibly_damaging(0.697) tolerated(0.29) neutral(0.279) HMMPfam_Tektin BCL6B 255877 genome.wustl.edu 37 17 6927466 6927466 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_181844.3 +1 validated p.G82R 0.561 34 0% 45 44.4% 0 - benign(0.035) tolerated(0.6) neutral(0.006) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB NLGN2 57555 genome.wustl.edu 37 17 7315515 7315515 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020795.2 +1 reviewed p.P166L 1.000 73 0% 95 31.6% 3 0% benign(0) tolerated(0.39) neutral(0.016) HMMPfam_COesterase,superfamily_SSF53474 MYH10 4628 genome.wustl.edu 37 17 8416962 8416962 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005964.1 -1 validated p.R849H 1.000 232 0% 232 34.1% 2 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL CDRT15P2 644694 genome.wustl.edu 37 17 15668122 15668122 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_932309.3 +1 model p.T11M 0.000 50 0% 52 21.2% 0 - - - - NULL KSR1 8844 genome.wustl.edu 37 17 25909717 25909717 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014238.1 +1 validated p.R52Q 1.000 39 0% 48 22.9% 1 0% probably_damaging(1) tolerated(0.54) deleterious(0.507) NULL CCT6B 10693 genome.wustl.edu 37 17 33257984 33257984 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006584.2 -1 reviewed p.G478 1.000 297 0% 332 28.6% 2 50% - - - HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like DUSP14 11072 genome.wustl.edu 37 17 35872619 35872619 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007026.2 +1 validated p.P82L 1.000 87 0% 105 30.5% 117 44.4% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II MED24 9862 genome.wustl.edu 37 17 38178230 38178230 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000422942 -1 known p.C122R 0.132 62 0% 86 41.9% 1033 48.8% - - - NULL KRT16 3868 genome.wustl.edu 37 17 39768884 39768884 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005557.3 -1 reviewed p.G19 0.008 38 0% 30 26.7% 2 0% - - - NULL KCNH4 23415 genome.wustl.edu 37 17 40328112 40328112 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012285.2 -1 reviewed p.T263 0.955 44 0% 41 24.4% 1 100% - - - superfamily_SSF81324 CNTNAP1 8506 genome.wustl.edu 37 17 40837315 40837315 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003632.2 +1 reviewed p.V198M 0.916 48 0% 64 34.4% 6 16.6% benign(0.256) tolerated(0.06) neutral(0.349) HMMSmart_LamG,superfamily_ConA_like_lec_gl IFI35 3430 genome.wustl.edu 37 17 41158986 41158986 + Splice_Site SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005533.3 +1 validated e1+1 0.928 281 0% 313 31.3% 0 - - - - - ADAM11 4185 genome.wustl.edu 37 17 42849672 42849672 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002390.4 +1 reviewed p.L194P 1.000 119 0% 123 31.7% 0 - benign(0.01) tolerated(0.09) neutral(0.297) NULL GFAP 2670 genome.wustl.edu 37 17 42988020 42988020 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002055.3 -1 reviewed p.T378 1.000 96 0% 130 28.5% 0 - - - - NULL CDK5RAP3 80279 genome.wustl.edu 37 17 46052656 46052656 + Nonsense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_176096.1 +1 reviewed p.E156* 0.997 54 0% 58 25.9% 112 19.6% - - - HMMPfam_DUF773 CDK5RAP3 80279 genome.wustl.edu 37 17 46058836 46058836 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_176096.1 +1 reviewed p.R497C 1.000 145 0% 120 34.2% 103 25.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF773 ABI3 51225 genome.wustl.edu 37 17 47295191 47295191 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016428.2 +1 reviewed p.A126T 0.994 144 0% 149 22.8% 31 0% benign(0.073) deleterious(0.02) neutral(0.388) HMMPfam_Abi_HHR CACNA1G 8913 genome.wustl.edu 37 17 48684268 48684268 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018896.3 +1 validated p.M1477T 1.000 278 0% 323 34.4% 1 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels UTP18 51096 genome.wustl.edu 37 17 49362606 49362606 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016001.2 +1 validated p.G402E 0.512 432 0% 461 25.6% 11 54.5% benign(0) tolerated(0.48) neutral(0.011) HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1 LOC100288781 100288781 genome.wustl.edu 37 17 55027331 55027331 + Splice_Site SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002343572.1 +1 model e2-1 0.000 158 0% 143 35.7% 12 75% - - - - RPS6KB1 6198 genome.wustl.edu 37 17 58024038 58024038 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003161.2 +1 reviewed p.S489 0.996 90 1.1% 99 30.3% 11 36.3% - - - NULL MED13 9969 genome.wustl.edu 37 17 60024339 60024339 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005121.2 -1 reviewed p.E2111K 1.000 323 0% 308 33.4% 22 18.1% benign(0.076) deleterious(0.02) neutral(0.389) NULL MED13 9969 genome.wustl.edu 37 17 60060273 60060273 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005121.2 -1 reviewed p.Q1031* 1.000 126 0.8% 149 28.2% 6 16.6% - - - NULL KCNH6 81033 genome.wustl.edu 37 17 61607463 61607463 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_030779.2 +1 reviewed p.R107C 1.000 59 0% 85 25.9% 0 - probably_damaging(0.999) tolerated(0.19) deleterious(0.540) HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain) KCNH6 81033 genome.wustl.edu 37 17 61613163 61613163 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_030779.2 +1 reviewed p.A412V 1.000 83 0% 70 38.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels DCAF7 10238 genome.wustl.edu 37 17 61662638 61662638 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000310827 +1 known p.C268 1.000 116 0% 188 32.4% 129 44.9% - - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 BPTF 2186 genome.wustl.edu 37 17 65971951 65971951 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_182641.3 +1 reviewed p.A2868V 1.000 225 0% 246 31.7% 9 22.2% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1 GPR142 350383 genome.wustl.edu 37 17 72368332 72368332 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_181790.1 +1 provisional p.V328M 0.980 134 0% 163 30.1% 0 - probably_damaging(0.996) deleterious(0.02) deleterious(0.845) HMMPfam_7tm_1,superfamily_SSF81321 MGAT5B 146664 genome.wustl.edu 37 17 74944044 74944044 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198955.1 +1 validated p.A695T 0.000 23 0% 17 35.3% 0 - benign(0) tolerated(0.37) neutral(0.019) NULL TNRC6C 57690 genome.wustl.edu 37 17 76083092 76083092 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001142640.1 +1 validated p.S1237 0.008 109 0% 101 35.6% 13 0% - - - NULL CYTH1 9267 genome.wustl.edu 37 17 76698247 76698247 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004762.2 -1 reviewed p.E105K 1.000 251 0% 285 31.9% 1 100% probably_damaging(0.974) deleterious(0.01) deleterious(0.822) HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain RNF213 57674 genome.wustl.edu 37 17 78291023 78291023 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020954.2 +1 validated p.A949 0.000 234 0% 243 34.6% 3 33.3% - - - NULL DUS1L 64118 genome.wustl.edu 37 17 80019146 80019146 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022156.3 -1 validated p.R261W 0.402 19 0% 19 26.3% 418 38.7% probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Dus,superfamily_SSF51395 TEX19 400629 genome.wustl.edu 37 17 80320320 80320320 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_207459.2 +1 provisional p.W98C 0.042 31 0% 45 42.2% 0 - probably_damaging(0.998) tolerated(0.14) deleterious(0.724) NULL NARF 26502 genome.wustl.edu 37 17 80439066 80439066 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012336.3 +1 reviewed p.A250T 0.835 69 0% 82 34.1% 51 33.3% benign(0) deleterious(0.05) neutral(0.345) HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase LAMA1 284217 genome.wustl.edu 37 18 7026084 7026084 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005559.2 -1 validated p.G766S 0.999 31 0% 52 36.5% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin ENSG00000153081 0 genome.wustl.edu 37 18 11619876 11619876 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000283050 -1 known p.P229S 0.004 23 0% 19 31.6% 13 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_NPIP ANKRD30B 374860 genome.wustl.edu 37 18 14779995 14779995 + Missense_Mutation SNP A A T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145029.1 +1 validated p.D486V 0.000 462 0% 413 22.8% 0 - probably_damaging(0.974) deleterious(0) deleterious(0.861) NULL FAM59A 64762 genome.wustl.edu 37 18 29867752 29867752 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022751.1 -1 provisional p.R270C 1.000 282 0% 321 11.2% 3 0% possibly_damaging(0.913) tolerated(0.13) deleterious(0.617) NULL GALNT1 2589 genome.wustl.edu 37 18 33283506 33283506 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020474.3 +1 reviewed p.T478A 1.000 273 0% 274 22.6% 11 9% benign(0.008) tolerated(0.54) neutral(0.007) HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins MYO5B 4645 genome.wustl.edu 37 18 47500789 47500789 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080467.2 -1 reviewed p.E418G 1.000 180 0% 215 14.9% 10 0% benign(0.001) tolerated(0.24) neutral(0.037) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases NEDD4L 23327 genome.wustl.edu 37 18 56063419 56063419 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001144967.1 +1 validated p.P949H 1.000 408 0% 441 35.8% 13 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain POLRMT 5442 genome.wustl.edu 37 19 618504 618504 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005035.3 -1 reviewed p.A1136T 0.988 189 0% 189 31.7% 357 32.4% probably_damaging(0.987) deleterious(0.02) deleterious(0.820) HMMPfam_RNA_pol,superfamily_SSF56672 CIRBP 1153 genome.wustl.edu 37 19 1272297 1272297 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000413636 +1 known p.R216K 0.000 108 0% 114 31.6% 39 35.8% unknown(0) deleterious(0) - NULL AP3D1 8943 genome.wustl.edu 37 19 2114139 2114141 + In_Frame_Del DEL CTT CTT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003938.5 -1 validated p.K862in_frame_del 0.995:0.997:0.987 - - - - - - - - - HMMPfam_BLVR AP3D1 8943 genome.wustl.edu 37 19 2132541 2132541 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003938.5 -1 validated p.A131T 1.000 90 0% 118 30.5% 97 37.1% possibly_damaging(0.873) tolerated(1) neutral(0.339) HMMPfam_Adaptin_N,superfamily_ARM repeat EEF2 1938 genome.wustl.edu 37 19 3982933 3982933 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001961.3 -1 reviewed p.R162C 1.000 25 0% 32 21.9% 2624 37.1% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases UHRF1 29128 genome.wustl.edu 37 19 4960752 4960752 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000398240 +1 known p.V786M 1.000 68 0% 96 22.9% 87 48.2% possibly_damaging(0.908) deleterious(0.01) deleterious(0.767) superfamily_RING/U-box KDM4B 23030 genome.wustl.edu 37 19 5144088 5144088 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015015.2 +1 validated p.G887 0.468 25 0% 29 31% 91 42.8% - - - HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger LONP1 9361 genome.wustl.edu 37 19 5700908 5700908 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004793.2 -1 reviewed p.T466 0.264 94 0% 119 29.4% 237 23.6% - - - NULL GTF2F1 2962 genome.wustl.edu 37 19 6381574 6381576 + In_Frame_Del DEL CCT CCT - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 CCT CCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002096.2 -1 validated p.E296in_frame_del 0.998:0.982:1.000 - - - - - - - - - HMMPfam_TFIIF_alpha CAMSAP3 57662 genome.wustl.edu 37 19 7673107 7673107 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080429.2 +1 validated p.A266 0.336 22 0% 39 38.5% 50 54% - - - superfamily_Calponin-homology domain CH-domain CAMSAP3 57662 genome.wustl.edu 37 19 7677810 7677810 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080429.2 +1 validated p.R838C 1.000 12 0% 27 22.2% 20 35% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL STXBP2 6813 genome.wustl.edu 37 19 7703904 7703904 + Splice_Site SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006949.2 +1 reviewed e3-1 1.000 82 0% 85 34.1% 15 100% - - - - LRRC8E 80131 genome.wustl.edu 37 19 7963733 7963733 + Missense_Mutation SNP C C T rs147444920 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_025061.3 +1 validated p.T109M 0.901 145 0% 160 32.5% 4 75% probably_damaging(0.98) tolerated(0.08) deleterious(0.724) NULL TIMM44 10469 genome.wustl.edu 37 19 7998859 7998859 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006351.3 -1 validated p.D191 0.154 83 0% 109 22% 14 14.2% - - - NULL MUC16 94025 genome.wustl.edu 37 19 8987333 8987333 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024690.2 -1 validated p.T13918 0.001 158 0% 173 31.2% 14 21.4% - - - superfamily_SEA domain EIF3G 8666 genome.wustl.edu 37 19 10229297 10229297 + Missense_Mutation SNP C C T rs11667630 byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000453552 -1 known p.R116H 0.007 47 0% 46 26.1% 0 - - - - NULL DNM2 1785 genome.wustl.edu 37 19 10908170 10908170 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001005361.1 +1 reviewed p.T437 0.262 128 0% 146 30.8% 4 25% - - - HMMPfam_Dynamin_M CNN1 1264 genome.wustl.edu 37 19 11658639 11658639 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001299.4 +1 validated p.V140L 0.921 189 0.5% 247 30.4% 12 0% benign(0) tolerated(0.46) neutral(0.012) superfamily_Calponin-homology domain CH-domain ZNF443 10224 genome.wustl.edu 37 19 12540989 12540989 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005815.4 -1 validated p.R666K 0.000 333 0% 359 28.4% 1 0% benign(0.025) tolerated(0.85) neutral(0.002) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF709 163051 genome.wustl.edu 37 19 12576282 12576282 + Nonsense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152601.3 -1 validated p.R152* 0.000 159 0% 162 38.3% 3 66.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers WDR83 84292 genome.wustl.edu 37 19 12781594 12781594 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001099737.2 +1 reviewed p.G155 0.007 70 0% 87 35.6% 80 38.7% unknown(0) - - HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40 HOOK2 29911 genome.wustl.edu 37 19 12883472 12883472 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_013312.2 -1 validated p.T137 0.274 184 0% 212 32.5% 25 20% - - - HMMPfam_HOOK STX10 8677 genome.wustl.edu 37 19 13255589 13255589 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003765.1 -1 provisional p.D189 0.902 48 0% 59 32.2% 312 33.6% - - - HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN LPHN1 22859 genome.wustl.edu 37 19 14266187 14266187 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001008701.2 -1 reviewed p.C1098Y 1.000 93 0% 92 25% 28 35.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2 PGLYRP2 114770 genome.wustl.edu 37 19 15586620 15586620 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_052890.3 -1 validated p.S287 0.032 26 0% 23 30.4% 0 - - - - NULL SLC35E1 79939 genome.wustl.edu 37 19 16666010 16666010 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024881.4 -1 validated p.V319I 1.000 107 0% 85 31.8% 30 23.3% benign(0.056) tolerated(0.36) neutral(0.024) HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE MYO9B 4650 genome.wustl.edu 37 19 17321648 17321650 + In_Frame_Del DEL AGG AGG - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 AGG AGG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004145.3 +1 reviewed p.E1976in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL KIAA1683 80726 genome.wustl.edu 37 19 18367961 18367961 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000358422 -1 known p.S546 0.000 55 0% 71 29.6% 2 0% - - - NULL TMEM59L 25789 genome.wustl.edu 37 19 18724781 18724781 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012109.2 +1 reviewed p.A91T 1.000 23 0% 30 26.7% 1 0% probably_damaging(0.99) tolerated(0.17) deleterious(0.500) NULL SUGP1 57794 genome.wustl.edu 37 19 19407961 19407961 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_172231.2 -1 validated p.A360 0.002 83 0% 91 29.7% 54 29.6% - - - NULL TSSK6 83983 genome.wustl.edu 37 19 19625770 19625770 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032037.2 -1 validated p.G156D 1.000 16 0% 12 33.3% 6 33.3% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase ENSG00000213985 0 genome.wustl.edu 37 19 20370070 20370070 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000397155 +1 known p.C344Y 1.000 179 0.6% 169 21.9% 0 - - - - HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067 ANKRD27 84079 genome.wustl.edu 37 19 33089123 33089123 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032139.2 -1 validated p.A1027 0.000 47 0% 47 17% 39 10.2% - - - NULL ANKRD27 84079 genome.wustl.edu 37 19 33090883 33090883 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032139.2 -1 validated p.Q947 0.087 262 0% 249 32.1% 7 14.2% - - - NULL RHPN2 85415 genome.wustl.edu 37 19 33502680 33502680 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_033103.4 -1 reviewed p.A166 0.717 44 0% 39 30.8% 19 73.6% - - - HMMPfam_BRO1 PEPD 5184 genome.wustl.edu 37 19 34003550 34003550 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000285.3 -1 reviewed p.G50 0.351 21 0% 26 50% 53 33.9% - - - HMMPfam_AMP_N,superfamily_SSF53092 GPI 2821 genome.wustl.edu 37 19 34884861 34884861 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000175.3 +1 reviewed p.V318I 0.575 93 0% 118 33.9% 435 39.7% benign(0.186) tolerated(0.12) neutral(0.278) HMMPfam_PGI,superfamily_SSF53697 MLL4 9757 genome.wustl.edu 37 19 36211495 36211495 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014727.1 +1 reviewed p.P416T 0.377 34 0% 31 29% 3 66.6% unknown(0) deleterious(0.04) - NULL MLL4 9757 genome.wustl.edu 37 19 36224533 36224533 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014727.1 +1 reviewed p.R2332H 1.000 68 0% 64 23.4% 7 42.8% probably_damaging(0.997) - - NULL WDR62 284403 genome.wustl.edu 37 19 36564262 36564262 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001083961.1 +1 validated p.K354N 0.948 76 0% 92 22.8% 9 55.5% benign(0.156) tolerated(0.49) neutral(0.025) HMMSmart_SM00320,superfamily_WD40 repeat-like ZNF585A 199704 genome.wustl.edu 37 19 37644343 37644343 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152655.2 -1 validated p.A98V 0.998 309 0% 334 28.4% 0 - benign(0.005) tolerated(0.08) neutral(0.300) superfamily_C2H2 and C2HC zinc fingers DPF1 8193 genome.wustl.edu 37 19 38713195 38713195 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000418517 -1 known p.R61W 0.971 33 0% 19 26.3% 2 0% unknown(0) - - NULL RYR1 6261 genome.wustl.edu 37 19 39038896 39038896 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000540.2 +1 reviewed p.A4040T 1.000 81 0% 99 26.3% 0 - probably_damaging(0.972) - - NULL DLL3 10683 genome.wustl.edu 37 19 39994719 39994719 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_016941.3 +1 reviewed p.R221* 0.456 80 0% 95 33.7% 0 - - - - HMMSmart_EGF,HMMPfam_EGF_2 LGALS14 56891 genome.wustl.edu 37 19 40199934 40199934 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_203471.1 +1 reviewed p.R163K 0.000 116 0% 156 42.9% 0 - benign(0.001) tolerated(0.42) neutral(0.014) HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl ENSG00000198251 0 genome.wustl.edu 37 19 41415186 41415186 + Frame_Shift_Del DEL C C - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000412510 -1 known p.G141fs 1.000 - - - - - - - - - HMMPfam_p450,superfamily_Cytochrome P450 AXL 558 genome.wustl.edu 37 19 41765473 41765473 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021913.3 +1 reviewed p.S783 0.998 92 0% 110 30% 14 0% - - - HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) MEGF8 1954 genome.wustl.edu 37 19 42860267 42860267 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001410.2 +1 validated p.F1408 0.993 49 0% 48 10.4% 3 0% - - - PatternScan_EGF_1,PatternScan_EGF_2 ENSG00000204933 0 genome.wustl.edu 37 19 43883230 43883230 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000378007 -1 known p.C16Y 0.023 86 0% 98 33.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_UPAR_LY6 DMWD 1762 genome.wustl.edu 37 19 46289902 46289902 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004943.1 -1 validated p.E284D 1.000 32 0% 27 22.2% 22 36.3% possibly_damaging(0.945) tolerated(0.14) deleterious(0.639) HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40 FAM83E 54854 genome.wustl.edu 37 19 49104603 49104603 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017708.3 -1 validated p.K400N 0.999 27 0% 46 34.8% 7 42.8% benign(0.076) deleterious(0) neutral(0.450) NULL SPHK2 56848 genome.wustl.edu 37 19 49131491 49131491 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020126.3 +1 provisional p.G277S 1.000 26 0% 21 47.6% 19 52.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DAGK_cat,HMMSmart_SM00046 ALDH16A1 126133 genome.wustl.edu 37 19 49965857 49965857 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_153329.3 +1 reviewed p.V315M 0.920 58 0% 69 27.5% 27 18.5% probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Aldedh,superfamily_ALDH-like AP2A1 160 genome.wustl.edu 37 19 50295285 50295285 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014203.2 +1 reviewed p.T189 0.841 52 0% 63 23.8% 192 23.9% - - - HMMPfam_Adaptin_N,superfamily_ARM repeat MYH14 79784 genome.wustl.edu 37 19 50735192 50735192 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001077186.1 +1 reviewed p.L327I 1.000 35 0% 49 36.7% 21 47.6% probably_damaging(1) tolerated(0.06) deleterious(0.823) HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases SPIB 6689 genome.wustl.edu 37 19 50922242 50922245 + Frame_Shift_Del DEL AGTA AGTA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 AGTA AGTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003121.3 +1 validated p.Q8fs 1.000 - - - - - - - - - NULL KLK10 5655 genome.wustl.edu 37 19 51518066 51518066 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001077500.1 -1 reviewed p.R274H 0.000 155 0% 167 29.3% 74 51.3% probably_damaging(0.994) tolerated(0.1) deleterious(0.738) superfamily_Trypsin-like serine proteases CEACAM18 729767 genome.wustl.edu 37 19 51983669 51983669 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001080405.1 +1 provisional p.T106 0.000 171 0% 193 34.2% 0 - - - - HMMSmart_SM00409,superfamily_Immunoglobulin SIGLEC12 89858 genome.wustl.edu 37 19 52002913 52002913 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_053003.2 -1 reviewed p.R289M 0.000 65 0% 74 35.1% 2 0% possibly_damaging(0.81) tolerated(0.11) deleterious(0.577) HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin ZNF534 147658 genome.wustl.edu 37 19 52941929 52941929 + Missense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001143939.1 +1 validated p.G419W 0.996 189 0% 191 29.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF57667 LOC388559 388559 genome.wustl.edu 37 19 53409477 53409477 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_496322.5 -1 model p.R682C 0.000 121 0% 124 32.3% 15 26.6% - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers NDUFA3 4696 genome.wustl.edu 37 19 54609272 54609272 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000391763 +1 known p.Q43* 0.971 216 0% 206 31.6% 526 22.2% - - - NULL LILRA1 11024 genome.wustl.edu 37 19 55106133 55106133 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006863.1 +1 provisional p.T25I 0.715 91 0% 105 40% 0 - benign(0.009) tolerated(0.16) neutral(0.060) superfamily_Immunoglobulin TNNI3 7137 genome.wustl.edu 37 19 55663279 55663279 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000363.4 -1 reviewed p.R186W 0.989 262 0% 330 32.1% 8 75% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL BRSK1 84446 genome.wustl.edu 37 19 55798615 55798615 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032430.1 +1 validated p.E89K 1.000 116 0% 116 29.3% 2 0% possibly_damaging(0.76) deleterious(0.03) deleterious(0.645) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase C20orf194 25943 genome.wustl.edu 37 20 3268422 3268422 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001009984.1 -1 validated p.R781H 1.000 92 2.2% 96 32.3% 3 66.6% probably_damaging(1) tolerated(0.07) deleterious(0.819) NULL SMOX 54498 genome.wustl.edu 37 20 4164147 4164147 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_175839.1 +1 reviewed p.P459H 1.000 99 0% 100 29% 22 18.1% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain BMP2 650 genome.wustl.edu 37 20 6750887 6750887 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001200.2 +1 reviewed p.S38 0.974 18 0% 24 37.5% 2 0% - - - HMMPfam_TGFb_propeptide PLCB4 5332 genome.wustl.edu 37 20 9351882 9351882 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000933.3 +1 reviewed p.S175 0.996 264 0% 262 28.6% 2 100% - - - superfamily_SSF47473 DZANK1 55184 genome.wustl.edu 37 20 18424088 18424088 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001099407.1 -1 validated p.P217L 0.433 57 0% 70 28.6% 2 50% possibly_damaging(0.7) tolerated(0.49) neutral(0.262) NULL SOGA1 140710 genome.wustl.edu 37 20 35467693 35467693 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_199181.2 -1 validated p.R42H 1.000 23 0% 36 36.1% 1 0% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL TTI1 9675 genome.wustl.edu 37 20 36641525 36641525 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014657.1 -1 predicted p.V232I 0.087 201 0% 254 31.5% 3 0% benign(0) tolerated(0.51) neutral(0.009) superfamily_ARM-type_fold PLCG1 5335 genome.wustl.edu 37 20 39800903 39800903 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002660.2 +1 reviewed p.C960Y 1.000 94 0% 123 32.5% 51 29.4% probably_damaging(1) tolerated(0.05) deleterious(0.845) HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl PTPRT 11122 genome.wustl.edu 37 20 40735540 40735540 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000454126 -1 known p.A730D 1.000 120 0% 170 33.5% 0 - - - - HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II SRSF6 6431 genome.wustl.edu 37 20 42088473 42088473 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006275.5 +1 reviewed p.R107C 1.000 297 0% 314 26.1% 109 36.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_RNA-binding domain RBD R3HDML 140902 genome.wustl.edu 37 20 42966035 42966035 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_178491.2 +1 provisional p.P80S 1.000 33 0% 40 12.5% 1 0% probably_damaging(1) tolerated(0.21) deleterious(0.544) HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular NCOA5 57727 genome.wustl.edu 37 20 44698944 44698945 + Frame_Shift_Del DEL AA AA - novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 AA AA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020967.2 -1 reviewed p.F90fs 0.925:0.993 - - - - - - - - - NULL BMP7 655 genome.wustl.edu 37 20 55758829 55758829 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001719.2 -1 reviewed p.R303C 0.998 70 0% 77 35.1% 4 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CDH26 60437 genome.wustl.edu 37 20 58562536 58562536 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_177980.2 +1 reviewed p.A289V 0.000 120 0% 147 39.5% 0 - benign(0) tolerated(1) - HMMPfam_Cadherin,superfamily_Cadherin SLCO4A1 28231 genome.wustl.edu 37 20 61299214 61299214 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000451793 +1 known p.A17V 1.000 81 0% 95 46.3% 5 0% benign(0.004) deleterious(0.02) neutral(0.383) NULL EEF1A2 1917 genome.wustl.edu 37 20 62121913 62121913 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001958.2 -1 reviewed p.S316 0.002 29 0% 19 42.1% 1 0% - - - HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins UCKL1 54963 genome.wustl.edu 37 20 62575013 62575013 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_017859.2 -1 validated p.S306G 1.000 41 0% 54 25.9% 149 29.5% benign(0.001) tolerated(0.19) neutral(0.050) NULL TPTE 7179 genome.wustl.edu 37 21 10934106 10934106 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_199261.2 -1 validated p.D291Y 1.000 554 0% 547 13.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) superfamily_(Phosphotyrosine protein) phosphatases II NCAM2 4685 genome.wustl.edu 37 21 22664538 22664538 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004540.2 +1 reviewed p.R199H 1.000 502 0.2% 497 12.7% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_SSF48726 APP 351 genome.wustl.edu 37 21 27347435 27347435 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000484.3 -1 reviewed p.R469H 1.000 126 0% 140 22.9% 648 22.3% unknown(0) deleterious(0) - superfamily_CAPPD an extracellular domain of amyloid beta A4 protein HUNK 30811 genome.wustl.edu 37 21 33297020 33297020 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014586.1 +1 validated p.R168* 0.750 41 0% 40 20% 0 - - - - HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase GART 2618 genome.wustl.edu 37 21 34876442 34876442 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000819.4 -1 reviewed p.K1008E 0.025 149 0% 193 28% 9 33.3% benign(0) tolerated(0.15) neutral(0.241) NULL SON 6651 genome.wustl.edu 37 21 34932306 34932306 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_032195.1 +1 reviewed p.A2261T 1.000 155 0% 174 33.3% 8 25% unknown(0) deleterious(0) - NULL KCNE2 9992 genome.wustl.edu 37 21 35742905 35742905 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_172201.1 +1 reviewed p.A43V 0.519 237 0% 231 30.3% 1 0% benign(0.008) deleterious(0) neutral(0.445) NULL CLDN14 23562 genome.wustl.edu 37 21 37833544 37833544 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012130.2 -1 reviewed p.P150 0.061 82 0% 77 36.4% 4 25% - - - HMMPfam_PMP22_Claudin DSCAM 1826 genome.wustl.edu 37 21 41423939 41423939 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001389.3 -1 validated p.V1711M 0.998 119 0% 174 31.6% 0 - benign(0.372) tolerated(0.11) neutral(0.390) NULL DSCAM 1826 genome.wustl.edu 37 21 41719670 41719670 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001389.3 -1 validated p.D379 0.999 242 0% 319 32% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin TMPRSS2 7113 genome.wustl.edu 37 21 42845268 42845268 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005656.3 -1 reviewed p.A295T 0.991 12 0% 16 31.2% 11 54.5% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS PRDM15 63977 genome.wustl.edu 37 21 43259892 43259892 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022115.3 -1 validated p.P603 0.001 154 0% 163 35% 0 - - - - NULL LOC100288232 100288232 genome.wustl.edu 37 21 43274676 43274676 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 XM_002343752.1 +1 model p.V128M 0.011 20 0% 26 23.1% 0 - - - - NULL ABCG1 9619 genome.wustl.edu 37 21 43704759 43704759 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004915.3 +1 reviewed p.Q275R 1.000 46 0% 49 24.5% 31 51.6% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases PCBP3 54039 genome.wustl.edu 37 21 47330865 47330865 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020528.2 +1 reviewed p.T174M 1.000 63 0% 64 12.5% 11 0% probably_damaging(0.978) deleterious(0) deleterious(0.865) HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I) ENSG00000093100 0 genome.wustl.edu 37 22 18310510 18310510 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000252134 -1 known p.R13Q 0.090 47 0% 53 30.2% 0 - - - - NULL TRMT2A 27037 genome.wustl.edu 37 22 20102109 20102109 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_022727.4 -1 validated p.H407 0.999 97 0% 86 41.9% 69 34.7% - - - superfamily_S-adenosyl-L-methionine-dependent methyltransferases PRR14L 253143 genome.wustl.edu 37 22 32108235 32108235 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173566.2 -1 validated p.R1864W 0.068 95 0% 134 29.1% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL IFT27 11020 genome.wustl.edu 37 22 37163864 37163864 + Missense_Mutation SNP C C T rs185871181 by1000genomes TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006860.3 -1 reviewed p.R25H 1.000 119 0% 158 28.5% 57 10.5% benign(0.005) tolerated(0.32) neutral(0.024) superfamily_SSF52540 TAB1 10454 genome.wustl.edu 37 22 39817833 39817833 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_006116.2 +1 reviewed p.A260T 0.134 140 0.7% 159 27.7% 36 33.3% benign(0.005) tolerated(0.61) neutral(0.004) HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C ATP5L2 267020 genome.wustl.edu 37 22 43036055 43036055 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000505920 -1 known p.N76D 1.000 308 0% 334 14.1% 0 - probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_ATP-synt_G PACSIN2 11252 genome.wustl.edu 37 22 43280514 43280514 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_007229.3 -1 reviewed p.Q221 1.000 293 0.3% 313 26.8% 19 36.8% - - - NULL CELSR1 9620 genome.wustl.edu 37 22 46930762 46930762 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_014246.1 -1 reviewed p.R769Q 0.208 40 0% 36 33.3% 46 47.8% probably_damaging(0.993) tolerated(0.13) deleterious(0.703) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like TUBGCP6 85378 genome.wustl.edu 37 22 50665268 50665268 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020461.3 -1 reviewed p.V499M 0.999 33 0% 39 33.3% 11 72.7% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) HMMPfam_Spc97_Spc98 ENSG00000238643 0 genome.wustl.edu 37 GL000229.1 17347 17347 + RNA SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000459109 +1 novel NULL NULL 11 0% 16 31.2% 0 - - - - - PLCXD1 55344 genome.wustl.edu 37 X 215988 215988 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018390.3 +1 reviewed p.L320M 0.993 69 0% 91 30.8% 11 63.6% probably_damaging(1) deleterious(0.01) deleterious(0.905) superfamily_PLC-like_Pdiesterase_TIM-brl CD99 4267 genome.wustl.edu 37 X 2656144 2656144 + Missense_Mutation SNP C C T rs56342225 TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 ENST00000381177 +1 known p.A25V 0.004 349 0% 407 36.4% 0 - unknown(0) - - NULL NLGN4X 57502 genome.wustl.edu 37 X 6069211 6069211 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020742.2 -1 reviewed p.G99 0.010 144 0% 127 40.9% 1 0% - - - HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases SHROOM2 357 genome.wustl.edu 37 X 9914789 9914789 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001649.2 +1 reviewed p.R1555C 0.886 79 0% 71 31% 6 83.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_ASD2 SCML1 6322 genome.wustl.edu 37 X 17768306 17768306 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001037540.1 +1 validated p.D199G 0.000 145 0% 177 40.7% 5 0% probably_damaging(0.995) tolerated(0.07) deleterious(0.776) NULL EIF2S3 1968 genome.wustl.edu 37 X 24075780 24075780 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001415.3 +1 reviewed p.R98W 1.000 158 0% 158 34.8% 66 4.5% probably_damaging(0.975) deleterious(0) deleterious(0.861) HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases GK 2710 genome.wustl.edu 37 X 30726198 30726198 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001128127.1 +1 reviewed p.T302A 0.998 261 0% 333 29.4% 2 0% possibly_damaging(0.922) tolerated(0.07) deleterious(0.691) HMMPfam_FGGY_C,superfamily_SSF53067 TAB3 257397 genome.wustl.edu 37 X 30849575 30849575 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_152787.3 -1 reviewed p.C703Y 1.000 257 0% 284 31% 1 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_NZF domain MAOB 4129 genome.wustl.edu 37 X 43628560 43628560 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000898.4 -1 reviewed p.A447 1.000 140 0% 203 30% 8 0% unknown(0) - - HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain USP11 8237 genome.wustl.edu 37 X 47092478 47092478 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004651.3 +1 reviewed p.A55 0.003 35 0% 18 27.8% 1 0% - - - NULL WAS 7454 genome.wustl.edu 37 X 48542775 48542775 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000377.2 +1 reviewed p.P79L 1.000 127 0.8% 147 31.3% 28 0% probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729 MAGIX 79917 genome.wustl.edu 37 X 49021099 49021099 + Missense_Mutation SNP A A C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_024859.2 +1 validated p.H84P 0.031 128 0% 129 25.6% 24 0% possibly_damaging(0.718) deleterious(0) deleterious(0.705) NULL USP27X 389856 genome.wustl.edu 37 X 49645166 49645166 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145073.1 +1 provisional p.T86A 1.000 290 0% 302 31.5% 1 0% - - - HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_SSF54001 WNK3 65267 genome.wustl.edu 37 X 54282287 54282287 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_020922.4 -1 reviewed p.N712 0.094 350 0% 382 25.1% 0 - - - - superfamily_Kinase_like ITIH6 347365 genome.wustl.edu 37 X 54776371 54776371 + Missense_Mutation SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_198510.2 -1 reviewed p.V1300A 1.000 33 0% 42 40.5% 0 - possibly_damaging(0.753) tolerated(0.35) neutral(0.297) NULL FAM155B 27112 genome.wustl.edu 37 X 68725820 68725820 + Missense_Mutation SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_015686.2 +1 validated p.V232A 0.939 27 0% 28 32.1% 1 100% benign(0.052) tolerated(0.58) neutral(0.008) NULL OTUD6A 139562 genome.wustl.edu 37 X 69283055 69283055 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_207320.1 +1 provisional p.H227 0.138 29 0% 29 41.4% 0 - - - - HMMPfam_OTU,superfamily_SSF54001 KIF4A 24137 genome.wustl.edu 37 X 69607053 69607053 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_012310.4 +1 reviewed p.R713H 1.000 187 0% 200 35% 5 100% probably_damaging(1) deleterious(0) deleterious(0.945) NULL DLG3 1741 genome.wustl.edu 37 X 69670611 69670611 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_021120.3 +1 reviewed p.Y321 0.937 102 0% 85 25.9% 0 - - - - superfamily_PDZ domain-like,HMMPfam_PDZ_assoc TEX11 56159 genome.wustl.edu 37 X 70099952 70099952 + Silent SNP A A G novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001003811.1 -1 reviewed p.V30 0.002 352 0% 446 24.2% 0 - - - - NULL TAF1 6872 genome.wustl.edu 37 X 70612490 70612490 + Silent SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_004606.3 +1 reviewed p.V971 1.000 204 0% 237 28.3% 3 0% - - - NULL ACRC 93953 genome.wustl.edu 37 X 70823556 70823556 + Silent SNP T T C novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_052957.4 +1 validated p.S143 0.000 205 0% 219 34.2% 0 - - - - NULL RPS4X 6191 genome.wustl.edu 37 X 71493124 71493124 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001007.4 -1 reviewed p.N216 1.000 163 0% 168 36.3% 7022 47.1% - - - NULL UPRT 139596 genome.wustl.edu 37 X 74519569 74519569 + Splice_Site SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_145052.3 +1 reviewed e5-1 1.000 208 0% 194 34% 0 - - - - - POU3F4 5456 genome.wustl.edu 37 X 82763390 82763390 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000307.3 +1 reviewed p.A20T 1.000 53 0% 50 44% 0 - benign(0.001) tolerated(0.52) neutral(0.009) NULL DRP2 1821 genome.wustl.edu 37 X 100496667 100496667 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001939.2 +1 reviewed p.P190 0.053 74 0% 64 39.1% 0 - - - - HMMSmart_SPEC,superfamily_Spectrin CXorf57 55086 genome.wustl.edu 37 X 105905403 105905403 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018015.5 +1 validated p.E713K 0.003 223 0% 216 33.3% 0 - possibly_damaging(0.571) tolerated(0.13) neutral(0.448) NULL RBMXL3 139804 genome.wustl.edu 37 X 114425237 114425237 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145346.1 +1 validated p.Y411 0.017 16 0% 20 30% 0 - - - - NULL CT47B1 643311 genome.wustl.edu 37 X 120009076 120009076 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001145718.1 -1 validated p.R150H 0.001 164 0% 188 32.4% 0 - probably_damaging(0.999) tolerated(0.18) deleterious(0.546) NULL FHL1 2273 genome.wustl.edu 37 X 135289980 135289980 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001449.4 +1 reviewed p.V121I 0.282 112 0% 118 29.7% 48 0% benign(0.001) tolerated(0.39) neutral(0.016) HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) FGF13 2258 genome.wustl.edu 37 X 137939732 137939732 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_001139500.1 -1 reviewed p.H53 1.000 417 0% 505 30.5% 0 - - - - superfamily_Cytok_IL1_like ATP11C 286410 genome.wustl.edu 37 X 138820076 138820076 + Missense_Mutation SNP C C A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_173694.4 -1 validated p.R1099M 1.000 153 0% 145 30.3% 0 - possibly_damaging(0.46) deleterious(0.02) deleterious(0.534) NULL FMR1 2332 genome.wustl.edu 37 X 147026502 147026502 + Nonsense_Mutation SNP G G T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_002024.5 +1 reviewed p.G529* 1.000 269 0% 324 23.5% 17 0% - - - NULL MTM1 4534 genome.wustl.edu 37 X 149814323 149814323 + Silent SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_000252.2 +1 reviewed p.S282 0.947 125 0% 150 38.7% 2 50% - - - HMMPfam_Myotub-related,superfamily_SSF52799 FATE1 89885 genome.wustl.edu 37 X 150889907 150889907 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_033085.2 +1 reviewed p.G92D 0.000 99 0% 120 30% 0 - possibly_damaging(0.815) tolerated(0.18) neutral(0.363) NULL CNGA2 1260 genome.wustl.edu 37 X 150908083 150908083 + Nonsense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005140.1 +1 reviewed p.R85* 0.657 192 0% 204 33.3% 0 - - - - NULL MAGEA6 4105 genome.wustl.edu 37 X 151869728 151869728 + Missense_Mutation SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_005363.2 +1 reviewed p.V140I 0.000 278 0.4% 333 33.3% 2 0% benign(0) tolerated(1) - HMMPfam_MAGE VBP1 7411 genome.wustl.edu 37 X 154444803 154444803 + Missense_Mutation SNP C C T novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_003372.5 +1 reviewed p.T15I 0.000 74 0% 74 36.5% 5 0% benign(0) tolerated(0.19) neutral(0.050) NULL TMLHE 55217 genome.wustl.edu 37 X 154741390 154741390 + Silent SNP G G A novel TCGA-D1-A174-01A-11D-A12J-09 TCGA-D1-A174-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 96b511df-3a69-4168-908c-662060b4f976 e9563a06-0b86-4986-976e-43d4040f1d61 NM_018196.3 -1 reviewed p.Y234 1.000 208 0% 277 13.7% 13 7.6% - - - HMMPfam_TauD,superfamily_Clavaminate synthase-like