writing sdrf to UCS.merger.sdrf.txt

------------------------------------------------------------------
2016-02-12 18:11:14.163801
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/UCS/22231309/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/UCS/22231309/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4R8-01.wig.txt
('', None)
0
1fa28744fb3e2a156695ed8393a790c0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RA-01.wig.txt
('', None)
0
c30de15b8843c86f464204bff520795c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RD-01.wig.txt
('', None)
0
2dbcaede3f9ffa1c76ea5b03dfbc2971
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RF-01.wig.txt
('', None)
0
1f9a207a2172d7d044f57127ab5356b2
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RJ-01.wig.txt
('', None)
0
daca9633c3a6eba9ffc73b6edc2c2121
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RM-01.wig.txt
('', None)
0
d5c251ac76f8d9805480e70ca15206f5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RN-01.wig.txt
('', None)
0
0226d5896fab4e76a9b2b87056fd75b6
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RO-01.wig.txt
('', None)
0
b6aeff96134d0c15ba2403a700527c59
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RS-01.wig.txt
('', None)
0
b80d0704ae262183b3e8a3c287a3e11c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RT-01.wig.txt
('', None)
0
6611b149b7eba7fc0e96a4d4d93d2612
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RU-01.wig.txt
('', None)
0
712b4485dd16cf0d96b6ff1d2e52b51c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A4RV-01.wig.txt
('', None)
0
0d6591923dd43b250547a2cb2ed4f5b1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A59E-01.wig.txt
('', None)
0
430a1ac8797f9b1cbcb59ad2509790ee
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N5-A59F-01.wig.txt
('', None)
0
4d8310691138f78f46fd7d19870a8021
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N6-A4V9-01.wig.txt
('', None)
0
bfba127ffb6875708d41bee3d5dd58f7
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N6-A4VC-01.wig.txt
('', None)
0
2282d31960b5fe7449b28132c812871a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N6-A4VD-01.wig.txt
('', None)
0
cca63dbb95d107c515cba822d6482d7f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N6-A4VE-01.wig.txt
('', None)
0
bad4822174b371b893871716b658a056
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N6-A4VF-01.wig.txt
('', None)
0
f39ef72044d28ce33999c8f9d951910c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N6-A4VG-01.wig.txt
('', None)
0
2dd2e4750051c7a9accaefddcf7dec9c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N7-A4Y0-01.wig.txt
('', None)
0
7a52e592a7c6b002095f96e7a0513320
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N7-A4Y5-01.wig.txt
('', None)
0
7609242aa02392bcc194dea68aeb60ad
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N7-A4Y8-01.wig.txt
('', None)
0
43d46f954266e0a25282249e0036c5e1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N7-A59B-01.wig.txt
('', None)
0
c159d995475f814072eadb0720ee2903
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PI-01.wig.txt
('', None)
0
9601a187bf8f9ea49857a54d15a16e85
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PL-01.wig.txt
('', None)
0
30a42f8dcb3c2565ff64726e4d044ccc
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PM-01.wig.txt
('', None)
0
dff337774de648af3564654f2a6f2bfc
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PN-01.wig.txt
('', None)
0
fdae1a2affb4e564cab55345910be61d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PO-01.wig.txt
('', None)
0
ada606b8c260152a7745f1f09de381f9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PP-01.wig.txt
('', None)
0
b7d422ee916a324fe874c3627144cfdd
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A4PQ-01.wig.txt
('', None)
0
1e8826fe37d3b73a79afcb85ea035a1b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N8-A56S-01.wig.txt
('', None)
0
d3e58e7f2613d192d7ee2786b5ab9104
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N9-A4PZ-01.wig.txt
('', None)
0
65edd9b0ccc3e7dfb3a0f7dcda63e645
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N9-A4Q1-01.wig.txt
('', None)
0
82f5088d8eb2976ed511b014983680ad
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N9-A4Q3-01.wig.txt
('', None)
0
3a6f8e5b15e838aecdb19142e9633743
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N9-A4Q4-01.wig.txt
('', None)
0
23d5d2120f0bd1af1ec7a427389457cf
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N9-A4Q7-01.wig.txt
('', None)
0
0d781451cfb1658ce62b99095ca468fa
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-N9-A4Q8-01.wig.txt
('', None)
0
c200969139fc843c325775345f259c21
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A4QV-01.wig.txt
('', None)
0
0e22ab9491bdc0bc91ccb81ff691f1bb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A4QW-01.wig.txt
('', None)
0
4a3e49884e57c1e637c89a10e5f711b4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A4QX-01.wig.txt
('', None)
0
f65a9a520972f03c0e1b57f4a91d850b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A4QY-01.wig.txt
('', None)
0
87610ac3f9e0db38799707c9c5c0a9a4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A4R0-01.wig.txt
('', None)
0
06e2a9cff4614bd68c5d9e421c5c5e07
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A4R1-01.wig.txt
('', None)
0
240fc6c67213c013c1b4f0d2174f3d77
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NA-A5I1-01.wig.txt
('', None)
0
2196a5e3426360d78ffc2eff17623ba0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ND-A4W6-01.wig.txt
('', None)
0
1b517a114978eef9ef0e748f0de3b703
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ND-A4WA-01.wig.txt
('', None)
0
745e2d3df5ec4da723b526b516610bea
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ND-A4WC-01.wig.txt
('', None)
0
08c311c2370ef2a0aecff3a2cd8d8a1b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ND-A4WF-01.wig.txt
('', None)
0
f93fac1897064dea1025b94246f0eaaa
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NF-A4WU-01.wig.txt
('', None)
0
e918e08c5ccd4da4d8eed254be003143
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NF-A4WX-01.wig.txt
('', None)
0
078a3c6cd4b9749d6af0392453debd88
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NF-A4X2-01.wig.txt
('', None)
0
75b11756645eec205cd593888c51cf8c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NF-A5CP-01.wig.txt
('', None)
0
0ffe084d9700e9fa4d22354d701d9769
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NG-A4VU-01.wig.txt
('', None)
0
9070304d8d354de010271bc99000b17f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-NG-A4VW-01.wig.txt
('', None)
0
b6ed507cc73c23cfdd37311e98552712
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-QM-A5NM-01.wig.txt
('', None)
0
42c039d68031f404c09a3d0152207f0a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/ucs/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_UCS.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-QN-A5NN-01.wig.txt
('', None)
0
b4ac27e709385291e2a4d12bd24dc7c0
It is not in the dictionary
Make a softlink is done.